GenePage for the arpB' pseudogene of Escherichia coli K-12

Primary Gene Name: arpB'
EcoGene Accession Number: EG13983
K-12 Gene Accession Number: ECK1718
MG1655 Gene Identifier: b4494, b1721, b1720
Gene Name Mnemonic: Ankyrin-like regulatory protein
Alternate Gene Symbols: ydiW; ydiX
Description: Pseudogene reconstruction, ankyrin repeats
  # bp Upstream # bp Downstream
MW: 70538.61 ---------632 aa Pre-Run BlastP UniProt
Pre-Run BlastP NR+Env
Left End: 1803094
Left Intergenic Region

Name: thrS_arpB

Length: 523 bp gap

Orientation: Divergent

Left_end: 1802571

Right_end: 1803093

Centisome: 38.83

Genomic Address join

The following join statement uses GenBank syntax to describe how the reconstructed frameshifted arpB pseudogene protein sequence was translated from the DNA:

join(1803094..1803519,1803518..1804993)


Clockwise
Minute or Centisome (%) = 38.85
Right End: 1804993
Right Intergenic Region

Name: arpB_yniD

Length: 171 bp gap

Orientation: Codirectional+

Left_end: 1804994

Right_end: 1805164

Centisome: 38.89

A frameshift at codon 142 is translated as an X in the reconstructed protein sequence. An intact allele is present in O157:H7 EDL933 as Z2749, which has K142.

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BamHI EcoRI HindIII