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Showing 41-50 of 309 paper
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Ma,2009Experimentsbiofilm formation E. coli K-12 BW25113 Affymetrix E. coli Antisense Genome Array Partial whole-transcriptome profiles were completed to determine the impact of OmpA on biofilm formation.Thomas K. Wood
Wang,2009ExperimentsCP4-57 prophage excision E. coli K-12 BW25113 Affymetrix E. coli Genome 2.0 Array A whole-transcriptome study was completed to understand how hosts control the gene expression of captured prophage using the CP4-57 cryptic phage as an example.Thomas K. Wood
Peters,2009Experimentsintragenic and stable RNA transcription E. coli K-12 MG1655 Escherichia coli K-12 MG1655 tiling array (Nimblegen Design) This is a chip-chip dataset. We are in the process of applying our algorithms to it. Robert Landick
Ito,2009Experimentsantibiotic resistance; Mature Biofilms E. coli K-12 MG1655 (pOX38Km) Affymetrix E. coli Antisense Genome Array A global gene expression analysis was performed to investigate physiological differences between the outside and the inside of biofilms.Satoshi Okabe
Sinha,2009ExperimentsCRP-S regulon; competence regulation E. coli K-12 BW25113 University of Alberta E. coli 3x6K microarray slides Sxy is required for the induction of competence genes in H. influenza. To identify its activity in E. coli, Sxy gene expression in cells carrying pEcsxy and empty control cells was completed. Induction of Sxy caused 81 genes to be up-regulated at least fourfold and 41 genes to be repressed at least fourfold.Sunita Sinha
Graham,2009ExperimentsZinc Depletion E. coli K-12 MG1655 MWG E. coli K12 Array The data represents a genome-wide analysis of Zn2+ depletion of cells grown in continuous culture. A total of 21 genes displayed a greater than 2-fold increase in mRNA levels, 13 displayed a decrease. Robert K. Poole
Thomassen,2009ExperimentsHigh-Density Oligonucleotide Bacterial Tiling Microarrays E. coli K-12 MG1655 Custom made Escherichia coli K12 MG1655 tiling array Torbjørn Rognes
Hong,2009ExperimentsDNA damage responsesE. coli RFM443Oligo 6K microarray chips (Genomictree, Korea)Their microarray data was combined with other microarray studies on DNA damage response. Man Bock Gu
Aberg,2009ExperimentsppGpp and DksA deficiencies on transcription E. coli K-12 MG1655slidesGrown in LB medium at 37 degrees C to the beginning of stationary phase (OD600 of 1.5). Carlos Balsalobre
Asakura,2009Experimentscell death; restriction–modification gene complex E. coli K-12 BW25113; MG1655 Affymetrix E. coli Antisense Genome Array A transcriptome analysis was completed on r+ and r- cells; r = restriction–modification gene complex.Yoko Asakura