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Showing 31-40 of 309 paper
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Zhao,2010Experimentsflagellar biosynthesis E. coli K-12 MG1655 Affymetrix GeneChipR E. coli Antisense Genome Arrays The DNA microarray results showed that a change of the intracellular level of a given sigma factor will cause a change of the transcriptional level of genes dependent on the sigma factor.Richard R. Burgess
Pasquer,2010ExperimentsBroad spectrum microarray E. coli K-12 ACW-universal-95000-v2 Jürg E Frey
Neusser,2010ExperimentsRole of 6SRNA in stationary phase transitionE. coli K-12 MC4100Genome AROS v 2.0. Note the probes are from 4 strains of E. coli and 3 plasmidsAuthors report 1.5 fold change as significant and use qRT-PCR for validated; however no genes over 2 fold were validated.Rolf Wagner
Nahku,2010ExperimentsGrowth rate dependent gene expressionE. coli K-12 MG1655KTH_E.Coli_6k_Oligo_Microarray (KTH Microarray Center (Stockholm, Sweden))For microarray analysis, steady state chemostat cultures of E. coli K12MG1655 were used as a reference (= 0.3 h?1). Quasi-steady state points at specific growth rate 0.47�0.02 h?1 were compared to the reference samples in triplicate biological parallels. Compared samples were obtained from experiments carried out with 10 g l?1 of glucose in medium.Ranno Nahku
Kim,2010Experimentspersister cell formation E. coli K-12 BW25113 Affymetrix E. coli GeneChip Genome 2.0 array The microarray analysis was performed using planktonic cells of E. coli K-12 BW25113 hfq (deletion mutant) vs. BW25113 wild-type cells. The whole-transcriptome study showed that Hfq, a small RNA chaperone, induces transport-related genes, outer membrane protein-related genes, and proteases. Thomas K. Wood
Moon,2009Experimentssmall RNA MgrR Escherichia coli K-12 [E_coli_2] Affymetrix E. coli Genome 2.0 Array Kyung Moon
Bailey,2009ExperimentsTriclosan; Drug resistanceE. coli K-12 (MG1655); Salmonella typhimurium SL1344Slides; Operon Array Ready E. coli 1.0 microarray oligonucleotide set (Qiagen-Operon)Differences in gene expression regarding the core response to triclosan were observed between E. coli K-12 and Salmonella typhimurium when grown in MOPS minimal medial. The cells from each species were exposed to the MIC of triclosan - 0.12 mg/L.Laura J. V. Piddock
Phadtare,2009ExperimentsTranscription, Initiation factor 1 (IF1)E. coli K-12 JM83 IntelliGene E.coli chip Version 2 A transcriptome analysis was completed to analyze the over-expression of IF1 (initiation factor 1) in E. coli.Sangita Phadtare
Cho,2009Experimentstranscription unit architecture E. coli K-12 MG1655 UCSD, NimbleGen_E_coli_MG1655_371K Tiling_Array_2005 Bernhard Ø Palsson
Stoebel,2009ExperimentsGene regulationE. coli K-12 DMS1684 DMS1688 DMS1692 DMS1711 DMS1717 DMS1725 DMS1726 DMS1727 DMS1735 DMS1737 DMS1739 DMS1741 DMS1743 DMS1745 DMS1747 DMS1749 DMS1751 DMS1753 DMS1766 DMS1782 DMS1784 DMS1786 DMS1788 DMS1790 DMS1792 DMS1794 DMS1796 SlidesCells for RNA preparation were grown in MOPS minimal medium (0.2% glucose) + 0.3M NaCl. Charles J. Dorman

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