Blast performed on February-13-2007
BLASTP 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: nr_env 
           5,549,519 sequences; 1,762,256,069 total letters

Query= EG13883 sfmD 
         (867 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_415065.1|  predicted outer membrane export usher prot...  1779   0.0   
ref|NP_308621.1|  putative outer membrane protein [Escherich...  1763   0.0   
gb|EAY47423.1|  fimbrial biogenesis outer membrane usher pro...  1762   0.0   
ref|NP_286281.1|  putative outer membrane protein, export fu...  1760   0.0   
ref|ZP_00925647.1|  COG3188: P pilus assembly protein, porin...  1624   0.0   
ref|ZP_00715310.1|  COG3188: P pilus assembly protein, porin...  1621   0.0   
ref|ZP_00722959.1|  COG3188: P pilus assembly protein, porin...  1619   0.0   
ref|ZP_00921688.1|  COG3188: P pilus assembly protein, porin...  1617   0.0   
ref|ZP_00709415.1|  COG3188: P pilus assembly protein, porin...  1506   0.0   
ref|ZP_00702862.1|  COG3188: P pilus assembly protein, porin...  1498   0.0   
ref|ZP_00704815.1|  COG3188: P pilus assembly protein, porin...  1454   0.0   
ref|ZP_00736906.1|  COG3188: P pilus assembly protein, porin...  1453   0.0   
emb|CAD56973.1|  outer membrane usher protein [Citrobacter f...  1318   0.0   
ref|NP_459541.1|  outer membrane usher protein precursor [Sa...  1289   0.0   
ref|YP_215572.1|  outer membrane usher protein [Salmonella e...  1286   0.0   
gb|AAA75419.1|  FimD [Salmonella typhimurium]                    1285   0.0   
ref|YP_151380.1|  outer membrane usher protein FimD precurso...  1283   0.0   
ref|NP_455135.1|  outer membrane usher protein FimD precurso...  1275   0.0   
ref|ZP_01588347.1|  fimbrial biogenesis outer membrane usher...  1147   0.0   
ref|ZP_01588405.1|  fimbrial biogenesis outer membrane usher...   810   0.0   
ref|YP_672489.1|  outer membrane usher protein FimD precurso...   808   0.0   
ref|ZP_00726010.1|  COG3188: P pilus assembly protein, porin...   808   0.0   
ref|ZP_00729829.1|  COG3188: P pilus assembly protein, porin...   808   0.0   
ref|NP_757244.1|  Outer membrane usher protein fimD precurso...   808   0.0   
ref|YP_543948.1|  outer membrane usher protein FimD precurso...   807   0.0   
emb|CAH55781.1|  export and assembly outer membrane protein ...   807   0.0   
ref|NP_313303.1|  FimD [Escherichia coli O157:H7 str. Sakai]...   806   0.0   
ref|ZP_00708202.1|  COG3188: P pilus assembly protein, porin...   806   0.0   
ref|ZP_00712161.1|  COG3188: P pilus assembly protein, porin...   805   0.0   
ref|NP_290933.1|  outer membrane protein; export and assembl...   804   0.0   
ref|NP_418737.1|  outer membrane usher protein, type 1 fimbr...   804   0.0   
ref|ZP_00716248.1|  COG3188: P pilus assembly protein, porin...   803   0.0   
ref|ZP_00719365.1|  COG3188: P pilus assembly protein, porin...   802   0.0   
ref|YP_691498.1|  Outer membrane usher protein fimD precurso...   798   0.0   
ref|YP_668230.1|  F1C fimbrial usher [Escherichia coli 536] ...   776   0.0   
emb|CAE55713.1|  FocD protein [Escherichia coli Nissle 1917]      774   0.0   
ref|NP_753156.1|  F1C fimbrial usher [Escherichia coli CFT07...   774   0.0   
ref|YP_540127.1|  S fimbriae outer membrane usher [Escherich...   773   0.0   
gb|AAV31768.1|  putative outer membrane usher [Escherichia c...   772   0.0   
gb|ABC16648.1|  FocD [Escherichia coli]                           771   0.0   
ref|NP_459028.1|  fimbrial usher [Salmonella typhimurium LT2...   768   0.0   
ref|YP_149372.1|  fimbrial usher [Salmonella enterica subsp....   765   0.0   
sp|P46009|FOCD_ECOLI  Outer membrane usher protein focD prec...   756   0.0   
prf||1713397E  S fimbrial adhesin                                 754   0.0   
emb|CAB01714.1|  outer membrane usher protein [Proteus mirab...   751   0.0   
ref|ZP_00710525.1|  COG3188: P pilus assembly protein, porin...   749   0.0   
ref|NP_415460.1|  predicted outer membrane usher protein [Es...   749   0.0   
ref|ZP_00703276.1|  COG3188: P pilus assembly protein, porin...   748   0.0   
ref|ZP_00716377.1|  COG3188: P pilus assembly protein, porin...   748   0.0   
ref|YP_688476.1|  putative outer membrane protein [Shigella ...   748   0.0   
ref|ZP_00924523.1|  COG3188: P pilus assembly protein, porin...   747   0.0   
ref|ZP_00698300.1|  COG3188: P pilus assembly protein, porin...   747   0.0   
ref|NP_836648.1|  putative outer membrane protein [Shigella ...   747   0.0   
ref|ZP_00920626.1|  COG3188: P pilus assembly protein, porin...   744   0.0   
gb|AAR28486.1|  unknown [Escherichia coli]                        743   0.0   
ref|ZP_00725324.1|  COG3188: P pilus assembly protein, porin...   743   0.0   
ref|NP_756076.1|  Hypothetical outer membrane usher protein ...   743   0.0   
ref|NP_286815.1|  PapC-like porin protein involved in fimbri...   742   0.0   
ref|ZP_00705200.1|  COG3188: P pilus assembly protein, porin...   742   0.0   
ref|ZP_00827368.1|  COG3188: P pilus assembly protein, porin...   741   0.0   
ref|YP_542894.1|  outer membrane usher protein precursor Auf...   741   0.0   
gb|AAD34372.1|AF130422_3  fimbrial usher [Salmonella typhimu...   716   0.0   
ref|ZP_00713225.1|  COG3188: P pilus assembly protein, porin...   713   0.0   
ref|NP_287650.1|  putative fimbrial usher protein [Escherich...   701   0.0   
ref|NP_753830.1|  Outer membrane usher protein fimD precurso...   695   0.0   
ref|YP_852646.1|  outer membrane usher protein FimD precurso...   692   0.0   
ref|ZP_00725712.1|  COG3188: P pilus assembly protein, porin...   692   0.0   
emb|CAA35968.1|  fimD [Escherichia coli]                          676   0.0   
ref|ZP_00731434.1|  COG3188: P pilus assembly protein, porin...   665   0.0   
gb|AAO22845.1|  putative fimbrial usher protein [Escherichia...   664   0.0   
ref|NP_290129.1|  PapC-like porin protein involved in fimbri...   657   0.0   
ref|YP_001005441.1|  outer membrane usher protein [Yersinia ...   644   0.0   
ref|NP_462539.1|  long polar fimbrial outer membrane usher p...   641   0.0   
ref|ZP_01534420.1|  fimbrial biogenesis outer membrane usher...   639   0.0   
ref|ZP_01536501.1|  fimbrial biogenesis outer membrane usher...   636   e-180 
ref|ZP_00823997.1|  COG3188: P pilus assembly protein, porin...   632   e-179 
gb|AAA73968.1|  lpfC gene product                                 629   e-178 
ref|ZP_00723839.1|  COG3188: P pilus assembly protein, porin...   624   e-176 
ref|ZP_00724111.1|  COG3188: P pilus assembly protein, porin...   619   e-175 
ref|NP_929417.1|  hypothetical protein plu2157 [Photorhabdus...   601   e-170 
gb|AAG55426.1|AE005284_4  partial fimbrial usher protein [Es...   590   e-166 
ref|ZP_00832976.1|  COG3188: P pilus assembly protein, porin...   578   e-163 
ref|NP_459180.1|  putativie fimbrial usher [Salmonella typhi...   578   e-163 
ref|NP_290363.1|  putative fimbrial usher [Escherichia coli ...   577   e-163 
ref|ZP_00720554.1|  COG3188: P pilus assembly protein, porin...   576   e-162 
ref|ZP_00717436.1|  COG3188: P pilus assembly protein, porin...   576   e-162 
ref|ZP_00701751.1|  COG3188: P pilus assembly protein, porin...   575   e-162 
ref|YP_691095.1|  putative long polar fimbriae [Shigella fle...   572   e-161 
ref|NP_709462.1|  putative long polar fimbriae [Shigella fle...   572   e-161 
ref|YP_215162.1|  putativie fimbrial usher [Salmonella enter...   571   e-161 
ref|ZP_00701219.1|  COG3188: P pilus assembly protein, porin...   566   e-159 
ref|NP_289717.1|  putative outer membrane protein [Escherich...   566   e-159 
gb|EAY49512.1|  fimbrial biogenesis outer membrane usher pro...   565   e-159 
gb|AAA57947.1|  ORF_o863; overlaps o231, other starts possib...   564   e-159 
ref|NP_417613.1|  predicted outer membrane protein [Escheric...   564   e-159 
ref|ZP_00707165.1|  COG3188: P pilus assembly protein, porin...   564   e-159 
ref|ZP_00735781.1|  COG3188: P pilus assembly protein, porin...   564   e-158 
ref|YP_312099.1|  putative outer membrane protein [Shigella ...   563   e-158 
ref|ZP_00924426.1|  COG3188: P pilus assembly protein, porin...   561   e-158 
ref|ZP_00711208.1|  COG3188: P pilus assembly protein, porin...   560   e-157 
ref|YP_219425.1|  putative fimbrial usher protein [Salmonell...   558   e-157 
ref|YP_153438.1|  putative fimbrial usher protein [Salmonell...   558   e-157 
ref|NP_463449.1|  putative fimbrial usher protein [Salmonell...   557   e-157 
gb|EAY46890.1|  fimbrial biogenesis outer membrane usher pro...   553   e-155 
ref|ZP_01535937.1|  fimbrial biogenesis outer membrane usher...   548   e-154 
ref|NP_928129.1|  hypothetical protein plu0784 [Photorhabdus...   539   e-151 
ref|YP_409564.1|  putative outer membrane protein [Shigella ...   531   e-149 
ref|ZP_01319261.1|  hypothetical protein Bpse1_03001266 [Bur...   525   e-147 
ref|ZP_01335733.1|  hypothetical protein Bpse4_03001700 [Bur...   523   e-146 
ref|YP_102731.1|  outer membrane usher protein [Burkholderia...   523   e-146 
ref|ZP_00439767.1|  COG3188: P pilus assembly protein, porin...   523   e-146 
ref|ZP_01341175.1|  hypothetical protein Bmal2_03000950 [Bur...   523   e-146 
ref|ZP_01331193.1|  hypothetical protein BpseS_03000683 [Bur...   522   e-146 
ref|ZP_00488133.1|  COG3188: P pilus assembly protein, porin...   522   e-146 
ref|YP_108242.1|  putative fimbrial usher protein [Burkholde...   521   e-146 
ref|ZP_00894931.2|  hypothetical protein Bpse110_02002805 [B...   520   e-145 
ref|ZP_01488354.1|  hypothetical protein Bpse11_03001008 [Bu...   520   e-145 
ref|YP_333626.1|  outer membrane usher protein [Burkholderia...   520   e-145 
ref|NP_928136.1|  hypothetical protein plu0791 [Photorhabdus...   520   e-145 
ref|NP_927631.1|  hypothetical protein plu0268 [Photorhabdus...   518   e-145 
ref|ZP_00827700.1|  COG3188: P pilus assembly protein, porin...   518   e-145 
ref|ZP_00826834.1|  COG3188: P pilus assembly protein, porin...   517   e-144 
ref|ZP_00729257.1|  COG3188: P pilus assembly protein, porin...   516   e-144 
ref|ZP_00712872.1|  COG3188: P pilus assembly protein, porin...   515   e-144 
ref|ZP_00718078.1|  COG3188: P pilus assembly protein, porin...   515   e-144 
ref|ZP_01590172.1|  fimbrial biogenesis outer membrane usher...   509   e-142 
ref|ZP_00699380.1|  COG3188: P pilus assembly protein, porin...   501   e-140 
gb|AAO17172.1|  PhfD [Photorhabdus luminescens]                   501   e-139 
ref|ZP_01293809.1|  hypothetical protein PaerP_01004324 [Pse...   498   e-139 
ref|YP_739430.1|  fimbrial biogenesis outer membrane usher p...   498   e-139 
gb|AAK16068.1|AF288077_1  PhfD [Photorhabdus luminescens]         490   e-136 
ref|NP_928329.1|  hypothetical protein plu0995 [Photorhabdus...   488   e-136 
gb|AAT41673.1|  putative fimbrial usher protein [Edwardsiell...   488   e-136 
dbj|BAD00163.1|  fimbrial usher protein [Edwardsiella tarda]      486   e-135 
gb|AAD44022.2|AF072900_1  AfaC [Escherichia coli]                 482   e-134 
ref|ZP_00823597.1|  COG3188: P pilus assembly protein, porin...   481   e-133 
sp|P53517|AFAC_ECOLI  Outer membrane usher protein afaC prec...   479   e-133 
ref|ZP_00652225.1|  Fimbrial biogenesis outer membrane usher...   478   e-133 
gb|AAD27810.1|AF114828_2  aggregative adherence fimbria II u...   477   e-132 
gb|AAK16477.1|  DraC [Escherichia coli]                           476   e-132 
ref|NP_778311.1|  outer membrane usher protein precursor [Xy...   476   e-132 
ref|NP_297374.1|  outer membrane usher protein precursor [Xy...   476   e-132 
gb|AAK17181.1|AF325672_3  DafaC [Escherichia coli]                476   e-132 
ref|NP_404900.1|  outer membrane usher protein PsaC precurso...   470   e-130 
ref|YP_069868.1|  outer membrane usher protein PsaC precurso...   469   e-130 
gb|AAB40285.1|  similar to S. typhimurium fimD [Escherichia ...   467   e-129 
gb|AAC37058.1|  usher                                             466   e-129 
gb|AAD44025.2|AF072901_1  AfaC [Escherichia coli]                 464   e-128 
sp|P46005|AGGC_ECOLI  Outer membrane usher protein aggC prec...   461   e-128 
ref|YP_587090.1|  fimbrial biogenesis outer membrane usher p...   461   e-127 
ref|NP_459299.1|  putative fimbrial usher [Salmonella typhim...   460   e-127 
gb|AAM88296.1|AF411067_2  putative usher protein; Agg3C [Esc...   459   e-127 
ref|YP_215281.1|  putative fimbriae usher [Salmonella enteri...   459   e-127 
ref|YP_792277.1|  usher CupC3 [Pseudomonas aeruginosa UCBPP-...   458   e-127 
ref|YP_775911.1|  fimbrial biogenesis outer membrane usher p...   458   e-127 
sp|P33408|MYFC_YEREN  Outer membrane usher protein myfC prec...   458   e-127 
ref|YP_787986.1|  HdaC, HUS-associated diffuse adherence [Es...   457   e-126 
ref|ZP_00984579.1|  COG3188: P pilus assembly protein, porin...   457   e-126 
emb|CAC44270.1|  salmonella atypical fimbria outer membrane ...   456   e-126 
ref|NP_249685.1|  usher CupC3 [Pseudomonas aeruginosa PAO1] ...   456   e-126 
ref|ZP_01557305.1|  fimbrial biogenesis outer membrane usher...   456   e-126 
ref|ZP_01644914.1|  fimbrial biogenesis outer membrane usher...   455   e-126 
ref|YP_586387.1|  fimbrial biogenesis outer membrane usher p...   455   e-126 
ref|ZP_01324141.1|  hypothetical protein BpseP_03002050 [Bur...   455   e-126 
emb|CAA66357.1|  psaC [Yersinia pestis]                           453   e-125 
ref|YP_234225.1|  Fimbrial biogenesis outer membrane usher p...   453   e-125 
ref|ZP_00697773.1|  COG3188: P pilus assembly protein, porin...   453   e-125 
ref|ZP_00964945.1|  COG3188: P pilus assembly protein, porin...   452   e-125 
ref|YP_841602.1|  outer membrane fimbrial usher porin, FUP f...   451   e-125 
ref|NP_454907.1|  outer-membrane fimbrial usher protein [Sal...   451   e-125 
ref|YP_438319.1|  outer membrane usher protein [Burkholderia...   450   e-124 
ref|YP_348773.1|  Fimbrial biogenesis outer membrane usher p...   450   e-124 
ref|YP_552375.1|  Putative fimbrial biogenesis outer membran...   449   e-124 
ref|YP_151652.1|  outer-membrane fimbrial usher protein [Sal...   449   e-124 
ref|ZP_01555847.1|  fimbrial biogenesis outer membrane usher...   448   e-124 
ref|YP_295905.1|  Fimbrial biogenesis outer membrane usher p...   446   e-123 
ref|ZP_01508019.1|  fimbrial biogenesis outer membrane usher...   445   e-123 
ref|YP_336757.1|  outer membrane usher protein [Burkholderia...   444   e-122 
ref|YP_110116.1|  outer membrane usher protein [Burkholderia...   443   e-122 
ref|ZP_00829946.1|  COG3188: P pilus assembly protein, porin...   442   e-122 
ref|YP_070887.1|  putative outer membrane fimbrial usher por...   442   e-122 
ref|NP_405282.1|  putative outer membrane usher protein [Yer...   442   e-122 
ref|ZP_01580362.1|  fimbrial biogenesis outer membrane usher...   441   e-122 
ref|YP_647850.1|  outer membrane usher protein [Yersinia pes...   441   e-121 
ref|ZP_01496392.1|  hypothetical protein YpseI_02001529 [Yer...   441   e-121 
ref|ZP_01175666.1|  COG3188: P pilus assembly protein, porin...   440   e-121 
ref|ZP_01662807.1|  fimbrial biogenesis outer membrane usher...   437   e-120 
ref|ZP_00824244.1|  COG3188: P pilus assembly protein, porin...   436   e-120 
ref|YP_273468.1|  Outer membrane usher protein fimD precurso...   434   e-119 
ref|YP_001005762.1|  outer membrane usher protein [Yersinia ...   432   e-119 
ref|ZP_00899863.1|  probable fimbrial biogenesis usher prote...   432   e-119 
ref|ZP_01558756.1|  fimbrial biogenesis outer membrane usher...   432   e-119 
ref|ZP_00834055.1|  COG3188: P pilus assembly protein, porin...   432   e-119 
ref|YP_272180.1|  outer-membrane fimbrial usher protein [Pse...   431   e-119 
ref|ZP_01663100.1|  fimbrial biogenesis outer membrane usher...   431   e-118 
ref|YP_261024.1|  fimbrial biogenesis usher protein, interru...   431   e-118 
ref|YP_295061.1|  Fimbrial biogenesis outer membrane usher p...   428   e-118 
ref|ZP_00987813.1|  COG3188: P pilus assembly protein, porin...   428   e-118 
ref|NP_900966.1|  outer membrane usher protein precursor [Ch...   428   e-118 
ref|ZP_01272836.1|  Fimbrial biogenesis outer membrane usher...   427   e-117 
ref|ZP_01580360.1|  fimbrial biogenesis outer membrane usher...   422   e-116 
ref|ZP_01296409.1|  hypothetical protein PaerP_01001665 [Pse...   422   e-116 
ref|NP_395429.1|  putative F1 capsule anchoring protein [Yer...   422   e-116 
ref|ZP_00696410.1|  COG3188: P pilus assembly protein, porin...   421   e-115 
emb|CAA43968.1|  caf1A [Yersinia pestis]                          421   e-115 
prf||1805225A  capsule protein F1                                 421   e-115 
ref|ZP_00831473.1|  COG3188: P pilus assembly protein, porin...   419   e-115 
ref|YP_582729.1|  fimbrial biogenesis outer membrane usher p...   419   e-115 
ref|ZP_01557123.1|  fimbrial biogenesis outer membrane usher...   418   e-115 
ref|YP_540726.1|  putative outer membrane usher FmlC protein...   418   e-115 
ref|ZP_00831779.1|  COG3188: P pilus assembly protein, porin...   418   e-115 
gb|AAP84169.1|  putative fimbrial biogenesis usher protein [...   416   e-114 
ref|ZP_01334440.1|  hypothetical protein Bpse4_03003053 [Bur...   414   e-114 
ref|ZP_01321344.1|  hypothetical protein BpseP_03004889 [Bur...   414   e-114 
ref|ZP_01211007.1|  hypothetical protein Bpse17_02003954 [Bu...   414   e-114 
ref|ZP_01316347.1|  hypothetical protein Bpse1_03004280 [Bur...   414   e-113 
gb|EAY46623.1|  fimbrial biogenesis outer membrane usher pro...   412   e-113 
ref|ZP_00485790.1|  COG3188: P pilus assembly protein, porin...   412   e-113 
ref|ZP_01589656.1|  fimbrial biogenesis outer membrane usher...   410   e-112 
ref|ZP_00896932.1|  hypothetical protein Bpse110_02000821 [B...   409   e-112 
ref|NP_414681.1|  predicted outer membrane usher protein [Es...   408   e-112 
gb|AAA23721.1|  htrE                                              406   e-111 
ref|NP_804071.1|  outer membrane usher protein HtrE precurso...   405   e-111 
ref|ZP_00824451.1|  COG3188: P pilus assembly protein, porin...   404   e-110 
ref|YP_149528.1|  outer membrane usher protein [Salmonella e...   404   e-110 
ref|NP_454796.1|  outer membrane usher protein HtrE precurso...   404   e-110 
ref|YP_235118.1|  Fimbrial biogenesis outer membrane usher p...   403   e-110 
ref|ZP_00719286.1|  COG3188: P pilus assembly protein, porin...   403   e-110 
ref|YP_668088.1|  outer membrane usher protein HtrE precurso...   402   e-110 
ref|NP_752120.1|  Outer membrane usher protein htrE precurso...   401   e-110 
gb|AAO49831.1|  probable porin/fimbrial assembly protein Htr...   401   e-109 
ref|YP_274232.1|  outer membrane usher protein fimD [Pseudom...   401   e-109 
ref|ZP_00828191.1|  COG3188: P pilus assembly protein, porin...   401   e-109 
ref|YP_851339.1|  outer membrane usher protein HtrE precurso...   400   e-109 
ref|YP_539194.1|  outer membrane usher protein HtrE precurso...   400   e-109 
ref|ZP_00832548.1|  COG3188: P pilus assembly protein, porin...   400   e-109 
ref|NP_792049.1|  outer membrane usher protein fimD [Pseudom...   399   e-109 
ref|YP_001004550.1|  putative outer membrane usher protein [...   397   e-108 
ref|YP_153347.1|  outer membrane fimbrial usher protein [Sal...   397   e-108 
gb|AAG58692.1|AE005581_4  putative fimbrial usher [Escherich...   397   e-108 
ref|NP_285835.1|  putative fimbrial usher protein [Escherich...   396   e-108 
ref|NP_308170.1|  putative outer membrane porin protein [Esc...   396   e-108 
ref|ZP_00821891.1|  COG3188: P pilus assembly protein, porin...   396   e-108 
ref|ZP_00714286.1|  COG3188: P pilus assembly protein, porin...   396   e-108 
sp|P33388|SEFC_SALEN  Outer membrane usher protein sefC prec...   395   e-108 
ref|NP_927858.1|  hypothetical protein plu0505 [Photorhabdus...   395   e-108 
ref|NP_744044.1|  type 1 pili subunit FimD [Pseudomonas puti...   394   e-107 
ref|ZP_00734685.1|  COG3188: P pilus assembly protein, porin...   391   e-107 
ref|ZP_01296802.1|  hypothetical protein PaerP_01001176 [Pse...   390   e-106 
ref|ZP_01640124.1|  fimbrial biogenesis outer membrane usher...   389   e-106 
ref|ZP_00899525.1|  type 1 pili subunit FimD [Pseudomonas pu...   389   e-106 
emb|CAJ49382.1|  putative fimbrial usher [Bordetella avium 1...   387   e-105 
ref|NP_458914.1|  outer membrane fimbrial usher protein [Sal...   386   e-105 
ref|ZP_01234073.1|  putative fimbrial usher protein [Vibrio ...   385   e-105 
ref|YP_068705.1|  putative outer membrane fimbrial usher por...   385   e-105 
ref|YP_789036.1|  usher CupB3 [Pseudomonas aeruginosa UCBPP-...   385   e-105 
ref|ZP_00967566.1|  COG3188: P pilus assembly protein, porin...   385   e-105 
ref|ZP_01495055.1|  hypothetical protein YpseI_02000155 [Yer...   385   e-105 
ref|ZP_01367516.1|  hypothetical protein PaerPA_01004668 [Ps...   385   e-105 
ref|NP_252773.1|  usher CupB3 [Pseudomonas aeruginosa PAO1] ...   385   e-105 
ref|ZP_00973257.1|  COG3188: P pilus assembly protein, porin...   385   e-105 
ref|YP_965265.1|  fimbrial biogenesis outer membrane usher p...   384   e-104 
gb|AAA92620.1|  transmembrane protein                             384   e-104 
ref|ZP_00975446.1|  COG3188: P pilus assembly protein, porin...   383   e-104 
ref|NP_250820.1|  usher CupA3 [Pseudomonas aeruginosa PAO1] ...   382   e-104 
ref|ZP_01365471.1|  hypothetical protein PaerPA_01002596 [Ps...   381   e-104 
ref|NP_808117.1|  outer membrane fimbrial usher protein [Sal...   381   e-104 
gb|EAG80159.1|  unknown [environmental sequence]                  381   e-103 
ref|ZP_00834599.1|  COG3188: P pilus assembly protein, porin...   380   e-103 
ref|YP_556366.1|  Putative fimbrial biogenesis outer membran...   380   e-103 
ref|YP_791116.1|  usher [Pseudomonas aeruginosa UCBPP-PA14] ...   379   e-103 
ref|NP_407325.1|  putative outer membrane usher protein [Yer...   378   e-103 
gb|EAY51855.1|  fimbrial biogenesis outer membrane usher pro...   377   e-102 
ref|ZP_00969543.1|  COG3188: P pilus assembly protein, porin...   377   e-102 
ref|ZP_00814192.1|  Fimbrial biogenesis outer membrane usher...   377   e-102 
ref|ZP_00797609.1|  COG3188: P pilus assembly protein, porin...   376   e-102 
ref|ZP_00724217.1|  COG3188: P pilus assembly protein, porin...   375   e-102 
ref|NP_309305.1|  putative outer membrane usher protein [Esc...   375   e-102 
ref|YP_258591.1|  outer membrane usher protein [Pseudomonas ...   373   e-101 
ref|NP_287040.1|  putative usher protein [Escherichia coli O...   372   e-101 
ref|YP_151574.1|  outer membrane fimbrial usher protein [Sal...   372   e-101 
ref|NP_454938.1|  outer membrane fimbrial usher protein [Sal...   372   e-101 
ref|YP_215368.1|  putative fimbriae; usher [Salmonella enter...   371   e-101 
ref|NP_459333.1|  putative fimbrial usher [Salmonella typhim...   371   e-100 
ref|YP_774721.1|  fimbrial biogenesis outer membrane usher p...   369   e-100 
gb|EAH95022.1|  unknown [environmental sequence]                  367   2e-99 
ref|YP_671655.1|  putative F17-like fimbrial usher [Escheric...   366   3e-99 
emb|CAD33726.1|  putative F17-like fimbrial usher [Escherich...   366   3e-99 
ref|ZP_01535186.1|  fimbrial biogenesis outer membrane usher...   366   4e-99 
ref|YP_543839.1|  putative F17-like fimbrial usher [Escheric...   365   7e-99 
gb|AAC45721.1|  F17a-C [Escherichia coli]                         364   1e-98 
ref|ZP_00820479.1|  COG3188: P pilus assembly protein, porin...   360   2e-97 
ref|ZP_01559246.1|  fimbrial biogenesis outer membrane usher...   360   2e-97 
ref|YP_001006884.1|  outer membrane usher protein [Yersinia ...   358   1e-96 
ref|YP_001006857.1|  probable fimbrial usher protein [Yersin...   357   2e-96 
gb|AAO73849.1|AF335469_6  FotD [Escherichia coli]                 356   4e-96 
ref|ZP_00157092.2|  COG3188: P pilus assembly protein, porin...   356   4e-96 
sp|P33397|HFC1_HAEIN  Outer membrane usher protein hifC prec...   354   1e-95 
gb|AAB70873.1|  usher protein [Haemophilus influenzae biotyp...   353   3e-95 
gb|AAK09050.1|  CS12 fimbria outer membrane usher protein pr...   352   6e-95 
emb|CAC93702.1|  fimbrial usher protein [Haemophilus sp. 26E...   352   6e-95 
emb|CAJ27313.1|  hypothetical protein [Enterobacter sakazakii]    352   7e-95 
ref|ZP_00823990.1|  COG3188: P pilus assembly protein, porin...   352   7e-95 
emb|CAC93701.1|  fimbrial usher protein [Haemophilus sp. 15N]     351   1e-94 
ref|YP_583815.1|  fimbrial biogenesis outer membrane usher p...   351   1e-94 
ref|YP_070436.1|  putative outer membrane fimbrial usher por...   351   1e-94 
ref|ZP_01496830.1|  hypothetical protein YpseI_02001981 [Yer...   351   1e-94 
sp|P45997|HFC2_HAEIN  Outer membrane usher protein hifC prec...   350   3e-94 
ref|NP_405481.1|  probable fimbrial usher protein [Yersinia ...   348   6e-94 
ref|ZP_00796394.1|  COG3188: P pilus assembly protein, porin...   348   6e-94 
sp|P45998|HFC3_HAEIN  Outer membrane usher protein hifC prec...   348   8e-94 
ref|ZP_00831813.1|  COG3188: P pilus assembly protein, porin...   348   8e-94 
ref|YP_044920.1|  putative outer membrane usher protein (pro...   348   1e-93 
ref|NP_285713.1|  putative usher protein [Escherichia coli O...   347   2e-93 
ref|NP_288615.1|  putative outer membrane protein [Escherich...   345   7e-93 
ref|ZP_00710079.1|  COG3188: P pilus assembly protein, porin...   345   7e-93 
ref|NP_837716.1|  putative outer membrane protein [Shigella ...   344   2e-92 
ref|NP_461094.1|  putative outer membrane protein [Salmonell...   344   2e-92 
ref|ZP_00700167.1|  COG3188: P pilus assembly protein, porin...   343   3e-92 
ref|NP_456709.1|  putative outer membrane usher protein [Sal...   343   3e-92 
ref|YP_150012.1|  putative outer membrane usher protein [Sal...   342   5e-92 
sp|P21647|MRKC_KLEPN  Outer membrane usher protein mrkC prec...   342   6e-92 
ref|ZP_00720406.1|  COG3188: P pilus assembly protein, porin...   342   6e-92 
gb|EAY49206.1|  fimbrial biogenesis outer membrane usher pro...   342   8e-92 
ref|YP_217152.1|  paral putative outer membrane protein [Sal...   342   8e-92 
ref|NP_416612.1|  predicted outer membrane protein [Escheric...   342   8e-92 
ref|ZP_00926718.1|  COG3188: P pilus assembly protein, porin...   342   8e-92 
ref|ZP_00706226.1|  COG3188: P pilus assembly protein, porin...   342   8e-92 
ref|YP_853228.1|  putative outer membrane usher protein YehB...   340   2e-91 
ref|YP_670047.1|  hypothetical outer membrane usher protein ...   340   2e-91 
ref|YP_541382.1|  putative outer membrane usher protein YehB...   340   2e-91 
ref|ZP_00726633.1|  COG3188: P pilus assembly protein, porin...   340   2e-91 
ref|ZP_00717918.1|  COG3188: P pilus assembly protein, porin...   340   2e-91 
ref|YP_734364.1|  fimbrial biogenesis outer membrane usher p...   339   4e-91 
ref|YP_671686.1|  CS12 fimbria outer membrane usher protein ...   339   5e-91 
ref|NP_754524.1|  Hypothetical outer membrane usher protein ...   339   5e-91 
ref|NP_706410.1|  hypothetical protein SF0463 [Shigella flex...   338   7e-91 
emb|CAJ49572.1|  outer membrane fimbrial usher protein [Bord...   338   1e-90 
ref|ZP_01496114.1|  hypothetical protein YpseI_02001247 [Yer...   337   1e-90 
ref|YP_071178.1|  putative outer membrane fimbrial usher por...   336   4e-90 
ref|YP_405925.1|  hypothetical protein SDY_4570 [Shigella dy...   334   1e-89 
ref|ZP_00924101.1|  COG3188: P pilus assembly protein, porin...   333   4e-89 
ref|YP_691845.1|  type 1 pili subunit FimD [Alcanivorax bork...   332   6e-89 
ref|ZP_00722826.1|  COG3188: P pilus assembly protein, porin...   331   1e-88 
ref|ZP_00710615.1|  COG3188: P pilus assembly protein, porin...   331   1e-88 
gb|AAL78360.1|  fimbrial usher protein [Escherichia coli]         330   2e-88 
ref|ZP_00921170.1|  COG3188: P pilus assembly protein, porin...   330   2e-88 
gb|AAA61816.1|  membrane anchor                                   328   7e-88 
ref|ZP_00702503.1|  COG3188: P pilus assembly protein, porin...   328   1e-87 
sp|P15484|CS32_ECOLI  Outer membrane usher protein CS3-2 (CS...   327   3e-87 
ref|ZP_00827259.1|  COG3188: P pilus assembly protein, porin...   322   5e-86 
ref|ZP_00832957.1|  COG3188: P pilus assembly protein, porin...   316   3e-84 
gb|AAN75567.1|  outer membrane protein FimC [Bordetella avium]    311   1e-82 
ref|NP_880573.1|  outer membrane usher protein precursor [Bo...   311   1e-82 
ref|NP_885210.1|  outer membrane usher protein precursor [Bo...   310   3e-82 
emb|CAA47266.1|  filamentous hemagglutinin [Bordetella pertu...   308   7e-82 
ref|YP_369011.1|  Fimbrial biogenesis outer membrane usher p...   307   2e-81 
ref|NP_889526.1|  outer membrane usher protein precursor [Bo...   307   2e-81 
sp|P46000|FASD_ECOLI  Outer membrane usher protein fasD prec...   306   3e-81 
ref|ZP_01559259.1|  fimbrial biogenesis outer membrane usher...   303   2e-80 
ref|ZP_01571122.1|  fimbrial biogenesis outer membrane usher...   303   4e-80 
ref|NP_459201.1|  putative fimbrial outer membrane usher [Sa...   303   4e-80 
ref|ZP_01562870.1|  fimbrial biogenesis outer membrane usher...   302   7e-80 
ref|YP_621027.1|  fimbrial biogenesis outer membrane usher p...   302   7e-80 
ref|YP_215183.1|  putative fimbrial outer membrane usher [Sa...   301   9e-80 
ref|YP_773416.1|  fimbrial biogenesis outer membrane usher p...   300   2e-79 
ref|ZP_01536667.1|  fimbrial biogenesis outer membrane usher...   300   3e-79 
ref|ZP_00425945.1|  Fimbrial biogenesis outer membrane usher...   299   6e-79 
ref|ZP_00713684.1|  COG3188: P pilus assembly protein, porin...   298   1e-78 
emb|CAA83635.1|  mrpC [Proteus mirabilis]                         296   3e-78 
ref|NP_928116.1|  Outer membrane usher protein MrfC [Photorh...   296   4e-78 
ref|NP_310137.1|  putative outer membrane protein [Escherich...   296   4e-78 
ref|ZP_01536714.1|  fimbrial biogenesis outer membrane usher...   294   2e-77 
sp|Q7DBJ9|YDET_ECO57  Putative uncharacterized protein ydet ...   293   2e-77 
ref|YP_152051.1|  probable outer membrane fimbrial usher pro...   292   7e-77 
ref|NP_416022.1|  hypothetical protein b1505 [Escherichia co...   291   9e-77 
ref|ZP_00835279.1|  COG3188: P pilus assembly protein, porin...   291   1e-76 
ref|ZP_00831717.1|  COG3188: P pilus assembly protein, porin...   291   2e-76 
ref|NP_457423.1|  probable outer membrane fimbrial usher pro...   290   2e-76 
gb|AAK82425.1|AF396083_4  MrfC [Photorhabdus luminescens]         290   3e-76 
gb|EAJ28665.1|  unknown [environmental sequence]                  288   8e-76 
gb|EAY49845.1|  fimbrial biogenesis outer membrane usher pro...   288   1e-75 
ref|ZP_01588606.1|  fimbrial biogenesis outer membrane usher...   287   2e-75 
ref|YP_992980.1|  fimbrial biogenesis outer membrane usher p...   287   2e-75 
ref|ZP_01326424.1|  hypothetical protein BpseS_03005535 [Bur...   287   2e-75 
ref|ZP_00485607.1|  COG3188: P pilus assembly protein, porin...   287   2e-75 
ref|YP_333456.1|  MrfC [Burkholderia pseudomallei 1710b] >gi...   286   3e-75 
ref|NP_938127.1|  SefC [Serratia entomophila] >gi|38176583|g...   286   3e-75 
ref|YP_108399.1|  putative outer membrane usher protein prec...   286   3e-75 
ref|ZP_01209656.1|  hypothetical protein Bpse17_02005328 [Bu...   286   3e-75 
ref|ZP_01346702.1|  hypothetical protein Bmal10_03000006 [Bu...   286   4e-75 
ref|ZP_01318953.1|  hypothetical protein Bpse1_03001559 [Bur...   286   4e-75 
ref|ZP_00734610.1|  COG3188: P pilus assembly protein, porin...   286   5e-75 
ref|ZP_00895901.1|  hypothetical protein Bpse110_02001905 [B...   286   5e-75 
ref|NP_872873.1|  probable fimbrial outer membrane usher pro...   285   7e-75 
ref|ZP_00826670.1|  COG3188: P pilus assembly protein, porin...   285   7e-75 
ref|NP_461945.1|  putative outer membrane usher protein [Sal...   285   9e-75 
ref|YP_217955.1|  putative outer membrane usher protein [Sal...   285   1e-74 
ref|YP_001005122.1|  fimbrial outer membrane usher protein [...   284   1e-74 
ref|YP_855054.1|  outer membrane usher protein [Aeromonas hy...   284   1e-74 
ref|YP_072371.1|  outer membrane fimbrial usher porin [Yersi...   284   1e-74 
ref|ZP_01535193.1|  fimbrial biogenesis outer membrane usher...   284   2e-74 
ref|ZP_00736735.1|  COG3188: P pilus assembly protein, porin...   283   2e-74 
ref|ZP_01498564.1|  hypothetical protein YpseI_02003742 [Yer...   283   3e-74 
ref|ZP_00831531.1|  COG3188: P pilus assembly protein, porin...   283   3e-74 
ref|ZP_00716186.1|  COG3188: P pilus assembly protein, porin...   282   6e-74 
ref|ZP_00696104.1|  COG3188: P pilus assembly protein, porin...   282   6e-74 
gb|EAY48983.1|  fimbrial biogenesis outer membrane usher pro...   281   9e-74 
ref|ZP_00704947.1|  COG3188: P pilus assembly protein, porin...   281   9e-74 
ref|ZP_00923997.1|  COG3188: P pilus assembly protein, porin...   281   2e-73 
ref|ZP_00835072.1|  COG3188: P pilus assembly protein, porin...   280   2e-73 
ref|NP_927769.1|  hypothetical protein plu0416 [Photorhabdus...   280   3e-73 
ref|ZP_00822767.1|  COG3188: P pilus assembly protein, porin...   280   3e-73 
ref|ZP_00703007.1|  COG3188: P pilus assembly protein, porin...   280   3e-73 
gb|AAR00403.1|AF401292_4  w0008 [Escherichia coli] >gi|14475...   279   5e-73 
sp|P53512|CSD1_ECOLI  Outer membrane usher protein cssD prec...   278   8e-73 
ref|NP_836290.1|  putative outer membrane protein [Shigella ...   278   1e-72 
gb|EAI69879.1|  unknown [environmental sequence]                  278   1e-72 
ref|AP_001356.1|  predicted outer membrane protein [Escheric...   277   2e-72 
pir||E64807  outer membrane usher protein ybgQ precursor - E...   277   2e-72 
ref|ZP_00699381.1|  COG3188: P pilus assembly protein, porin...   277   2e-72 
sp|P53513|CSD2_ECOLI  Outer membrane usher protein cssD prec...   276   3e-72 
ref|ZP_00702304.1|  COG3188: P pilus assembly protein, porin...   276   3e-72 
ref|YP_688174.1|  putative outer membrane protein [Shigella ...   275   9e-72 
gb|AAY82874.1|  PapC [Escherichia coli]                           275   9e-72 
ref|NP_311248.1|  putative outer membrane protein [Escherich...   275   1e-71 
ref|NP_755663.1|  Hypothetical outer membrane usher protein ...   274   2e-71 
ref|YP_542458.1|  putative outer membrane usher protein YqiG...   274   2e-71 
ref|YP_670854.1|  fimbrial usher protein PixC [Escherichia c...   274   2e-71 
ref|ZP_00922594.1|  COG3188: P pilus assembly protein, porin...   273   3e-71 
ref|YP_672376.1|  outer membrane usher protein PapC precurso...   273   3e-71 
emb|CAD42029.1|  PrfC protein [Escherichia coli]                  273   3e-71 
ref|NP_288911.1|  putative fimbrial usher [Escherichia coli ...   273   4e-71 
sp|P53514|PMFC_PROMI  Outer membrane usher protein pmfC prec...   273   4e-71 
emb|CAJ87547.1|  Pix fimbrial usher protein PixC [Escherichi...   272   6e-71 
ref|ZP_00823076.1|  COG3188: P pilus assembly protein, porin...   272   7e-71 
ref|ZP_00725097.1|  COG3188: P pilus assembly protein, porin...   271   1e-70 
ref|YP_543827.1|  outer membrane usher protein PapC precurso...   271   1e-70 
ref|NP_757034.1|  PapC protein [Escherichia coli CFT073] >gi...   271   2e-70 
ref|NP_755465.1|  PapC protein [Escherichia coli CFT073] >gi...   271   2e-70 
sp|P07110|PAPC_ECOLI  Outer membrane usher protein papC prec...   271   2e-70 
gb|EAY49607.1|  fimbrial biogenesis outer membrane usher pro...   270   2e-70 
gb|AAM91932.1|AF525420_3  usher protein [Xenorhabdus nematop...   270   2e-70 
ref|YP_670271.1|  hypothetical outer membrane usher protein ...   270   3e-70 
ref|YP_541620.1|  putative outer membrane usher YfcU precurs...   270   3e-70 
ref|YP_403855.1|  putative outer membrane protein [Shigella ...   270   3e-70 
ref|NP_754765.1|  Putative outer membrane protein [Escherich...   270   3e-70 
ref|ZP_00726094.1|  COG3188: P pilus assembly protein, porin...   270   3e-70 
ref|YP_854254.1|  outer membrane usher protein PapC [Escheri...   270   4e-70 
ref|YP_311272.1|  PapC-like porin protein [Shigella sonnei S...   268   1e-69 
ref|ZP_01495455.1|  hypothetical protein YpseI_02000563 [Yer...   268   1e-69 
ref|ZP_00719781.1|  COG3188: P pilus assembly protein, porin...   268   1e-69 
ref|ZP_01519491.1|  fimbrial biogenesis outer membrane usher...   268   1e-69 
gb|EAY49433.1|  fimbrial biogenesis outer membrane usher pro...   267   2e-69 
sp|P77196|YFCU_ECOLI  Hypothetical outer membrane usher prot...   266   4e-69 
ref|YP_408767.1|  PapC-like porin protein [Shigella boydii S...   266   4e-69 
ref|ZP_00719733.1|  COG3188: P pilus assembly protein, porin...   264   2e-68 
ref|ZP_00710316.1|  COG3188: P pilus assembly protein, porin...   264   2e-68 
ref|ZP_00717785.1|  COG3188: P pilus assembly protein, porin...   264   2e-68 
ref|ZP_00706450.1|  COG3188: P pilus assembly protein, porin...   264   2e-68 
ref|NP_404332.1|  outer membrane usher protein [Yersinia pes...   263   3e-68 
ref|YP_653002.1|  outer membrane usher protein [Yersinia pes...   263   3e-68 
ref|YP_071853.1|  outer membrane fimbrial usher porin [Yersi...   263   3e-68 
ref|ZP_01176541.1|  COG3188: P pilus assembly protein, porin...   263   3e-68 
ref|ZP_00737837.1|  COG3188: P pilus assembly protein, porin...   263   3e-68 
ref|ZP_00733969.1|  COG3188: P pilus assembly protein, porin...   263   3e-68 
ref|ZP_00697932.1|  COG3188: P pilus assembly protein, porin...   263   3e-68 
ref|ZP_00798187.1|  COG3188: P pilus assembly protein, porin...   263   5e-68 
ref|ZP_00714660.1|  COG3188: P pilus assembly protein, porin...   263   5e-68 
emb|CAA43564.1|  papC protein [Escherichia coli] >gi|42304|e...   262   6e-68 
ref|ZP_00712342.1|  COG3188: P pilus assembly protein, porin...   262   6e-68 
ref|ZP_00700386.1|  COG3188: P pilus assembly protein, porin...   262   8e-68 
ref|YP_026198.1|  predicted outer membrane usher protein [Es...   261   1e-67 
ref|ZP_00926984.1|  COG3188: P pilus assembly protein, porin...   261   2e-67 
ref|YP_049051.1|  putative outer membrane usher protein [Erw...   259   4e-67 
gb|AAG58693.1|AE005581_5  putative fimbrial usher [Escherich...   259   7e-67 
emb|CAA34816.1|  unnamed protein product [Escherichia coli]       256   4e-66 
ref|ZP_01158764.1|  putative outer membrane protein [Photoba...   256   6e-66 
gb|EAG56279.1|  unknown [environmental sequence]                  254   2e-65 
ref|ZP_00982535.1|  COG3188: P pilus assembly protein, porin...   252   6e-65 
ref|ZP_00703820.1|  COG3188: P pilus assembly protein, porin...   251   1e-64 
emb|CAC85335.1|  PixC protein [Escherichia coli]                  251   2e-64 
ref|YP_652044.1|  hypothetical protein YPA_2134 [Yersinia pe...   248   2e-63 
ref|ZP_01178198.1|  COG3188: P pilus assembly protein, porin...   248   2e-63 
ref|ZP_00711399.1|  COG3188: P pilus assembly protein, porin...   246   3e-63 
gb|AAC28316.1|  usher protein precursor [Escherichia coli]        243   3e-62 
ref|NP_286434.1|  putative outer membrane usher protein [Esc...   241   1e-61 
ref|NP_308770.1|  truncated outer membrane protein [Escheric...   241   1e-61 
gb|EAD76431.1|  unknown [environmental sequence]                  240   2e-61 
ref|YP_045158.1|  putative fimbrial usher protein [Acinetoba...   240   3e-61 
ref|ZP_01219198.1|  Fimbrial biogenesis outer membrane usher...   237   2e-60 
ref|YP_669407.1|  putative truncated fimbrial usher protein ...   236   5e-60 
ref|ZP_00734681.1|  COG3188: P pilus assembly protein, porin...   234   2e-59 
ref|YP_217877.1|  outer membrane usher protein [Salmonella e...   233   3e-59 
ref|YP_151975.1|  outer membrane usher protein [Salmonella e...   233   4e-59 
ref|NP_457344.1|  outer membrane usher protein [Salmonella e...   233   4e-59 
ref|ZP_00728085.1|  COG3188: P pilus assembly protein, porin...   232   9e-59 
ref|NP_806553.1|  outer membrane usher protein [Salmonella e...   231   1e-58 
ref|ZP_00709922.1|  COG3188: P pilus assembly protein, porin...   231   1e-58 
ref|ZP_00734257.1|  COG3188: P pilus assembly protein, porin...   231   2e-58 
ref|NP_671355.1|  hypothetical protein y4062 [Yersinia pesti...   229   7e-58 
ref|NP_073245.1|  PefC [Salmonella enterica subsp. enterica ...   229   7e-58 
ref|ZP_01174501.1|  COG3188: P pilus assembly protein, porin...   229   7e-58 
gb|EAG57694.1|  unknown [environmental sequence]                  226   6e-57 
emb|CAC69395.1|  FedC protein [Escherichia coli]                  224   2e-56 
gb|AAA63534.1|  outer membrane protein >gi|154243|gb|AAC3696...   224   2e-56 
ref|NP_490509.1|  usher protein [Salmonella typhimurium LT2]...   223   5e-56 
gb|AAL67415.1|AF447814_83  truncated PapC [Escherichia coli]      221   1e-55 
ref|YP_554576.1|  putative outer membrane fimbrial usher por...   221   2e-55 
dbj|BAB20567.1|  PefC [Salmonella enteritidis]                    221   2e-55 
gb|AAL32288.1|AF222806_2  FedB [Escherichia coli]                 218   1e-54 
sp|P12050|FAND_ECOLI  Outer membrane usher protein fanD prec...   215   8e-54 
gb|EAG97614.1|  unknown [environmental sequence]                  214   1e-53 
ref|YP_026167.1|  predicted export usher protein [Escherichi...   214   2e-53 
ref|ZP_00827623.1|  COG3188: P pilus assembly protein, porin...   208   1e-51 
ref|YP_402579.1|  hypothetical protein SDY_0912 [Shigella dy...   203   3e-50 
gb|EAJ21253.1|  unknown [environmental sequence]                  203   4e-50 
gb|EAY46889.1|  fimbrial biogenesis outer membrane usher pro...   200   3e-49 
ref|YP_404097.1|  putative fimbrial usher [Shigella dysenter...   196   4e-48 
ref|ZP_00926470.1|  COG3188: P pilus assembly protein, porin...   196   7e-48 
sp|P06970|FAED_ECOLI  Outer membrane usher protein faeD prec...   195   9e-48 
ref|ZP_00731260.1|  COG3188: P pilus assembly protein, porin...   195   9e-48 
ref|ZP_00723351.1|  COG3188: P pilus assembly protein, porin...   195   1e-47 
ref|ZP_00707071.1|  COG3188: P pilus assembly protein, porin...   194   2e-47 
ref|ZP_00926142.1|  COG3188: P pilus assembly protein, porin...   194   2e-47 
ref|ZP_00701126.1|  COG3188: P pilus assembly protein, porin...   192   1e-46 
emb|CAA50786.1|  cshB porin (usher) [Escherichia coli]            190   3e-46 
ref|ZP_00733684.1|  COG3188: P pilus assembly protein, porin...   188   1e-45 
gb|EAJ02926.1|  unknown [environmental sequence]                  188   1e-45 
gb|AAB97611.1|  putative fimbrial chaperone [Escherichia coli]    182   6e-44 
gb|EAG11915.1|  unknown [environmental sequence]                  180   3e-43 
gb|EAG42197.1|  unknown [environmental sequence]                  179   9e-43 
gb|AAX78186.1|  LdaD [Escherichia coli]                           178   1e-42 
ref|ZP_00921500.1|  COG3188: P pilus assembly protein, porin...   177   2e-42 
ref|NP_839401.1|  probable fimbrial protein remnant [Shigell...   176   6e-42 
ref|ZP_01498261.1|  hypothetical protein YpseI_02003437 [Yer...   174   2e-41 
ref|YP_068905.1|  putative outer membrane fimbrial usher pro...   174   2e-41 
ref|ZP_00795606.1|  COG3188: P pilus assembly protein, porin...   174   2e-41 
ref|NP_403954.1|  putative outer membrane fimbrial usher pro...   174   2e-41 
ref|YP_690842.1|  probable fimbrial protein remnant [Shigell...   173   5e-41 
ref|ZP_00795885.1|  COG3188: P pilus assembly protein, porin...   173   5e-41 
gb|EAE76043.1|  unknown [environmental sequence]                  172   1e-40 
ref|NP_991852.1|  putative outer membrane fimbrial usher pro...   171   2e-40 
emb|CAA34817.1|  unnamed protein product [Escherichia coli]       171   2e-40 
ref|ZP_00796678.1|  COG3188: P pilus assembly protein, porin...   165   1e-38 
ref|ZP_01161555.1|  usher protein [Photobacterium sp. SKA34]...   164   3e-38 
gb|EAG11914.1|  unknown [environmental sequence]                  162   1e-37 
ref|NP_417683.1|  predicted outer membrane protein [Escheric...   161   2e-37 
ref|ZP_01534787.1|  fimbrial biogenesis outer membrane usher...   157   4e-36 
gb|EAG44476.1|  unknown [environmental sequence]                  155   1e-35 
ref|YP_690839.1|  putative fimbriae usher [Shigella flexneri...   152   9e-35 
ref|NP_709262.1|  hypothetical protein SF3511 [Shigella flex...   152   1e-34 
ref|ZP_00829940.1|  COG3188: P pilus assembly protein, porin...   151   1e-34 
ref|ZP_00831712.1|  COG3188: P pilus assembly protein, porin...   150   3e-34 
gb|EAJ13315.1|  unknown [environmental sequence]                  149   7e-34 
ref|ZP_00827622.1|  COG3188: P pilus assembly protein, porin...   147   4e-33 
gb|EAJ21252.1|  unknown [environmental sequence]                  145   1e-32 
ref|ZP_00821162.1|  COG3188: P pilus assembly protein, porin...   143   4e-32 
emb|CAA34818.1|  unnamed protein product [Escherichia coli]       141   2e-31 
ref|ZP_00983419.1|  COG3188: P pilus assembly protein, porin...   139   1e-30 
ref|NP_463428.1|  putative fimbrial usher protein [Salmonell...   137   2e-30 
ref|ZP_00827360.1|  COG3188: P pilus assembly protein, porin...   136   5e-30 
gb|ABM92905.1|  fimbrial usher protein subunit [Serratia mar...   135   1e-29 
dbj|BAE19841.1|  fimbrial usher protein [Edwardsiella tarda]      129   1e-27 
ref|ZP_00827914.1|  COG3188: P pilus assembly protein, porin...   128   1e-27 
gb|EAH32951.1|  unknown [environmental sequence]                  127   3e-27 
gb|EAG09429.1|  unknown [environmental sequence]                  124   2e-26 
ref|ZP_00734682.1|  COG3188: P pilus assembly protein, porin...   124   2e-26 
gb|EAG68489.1|  unknown [environmental sequence]                  123   4e-26 
ref|ZP_00696411.1|  COG3188: P pilus assembly protein, porin...   119   6e-25 
ref|ZP_00719919.1|  COG3188: P pilus assembly protein, porin...   118   1e-24 
ref|ZP_01567376.1|  fimbrial biogenesis outer membrane usher...   116   7e-24 
gb|EAH82824.1|  unknown [environmental sequence]                  114   3e-23 
ref|ZP_00984805.1|  COG3188: P pilus assembly protein, porin...   114   3e-23 
ref|YP_652042.1|  putative outer membrane fimbrial usher por...   113   6e-23 
ref|YP_110141.1|  fimbrial usher protein [Burkholderia pseud...   113   6e-23 
ref|YP_336788.1|  putative fimbrial usher protein [Burkholde...   113   6e-23 
ref|ZP_00797973.1|  COG3188: P pilus assembly protein, porin...   113   6e-23 
gb|AAY89700.1|  FimD [Escherichia coli]                           112   8e-23 
gb|EAG83365.1|  unknown [environmental sequence]                  108   1e-21 
ref|ZP_00734609.1|  COG3188: P pilus assembly protein, porin...   108   1e-21 
gb|EAY45575.1|  fimbrial biogenesis outer membrane usher pro...   107   3e-21 
ref|ZP_00719920.1|  COG3188: P pilus assembly protein, porin...   106   5e-21 
ref|YP_051166.1|  putative fimbrial usher protein [Erwinia c...   105   9e-21 
gb|AAG55425.1|AE005284_3  partial fimbrial usher protein [Es...   105   9e-21 
ref|YP_261050.1|  type I pili usher protein CsuD [Pseudomona...   104   2e-20 
ref|ZP_01213895.1|  hypothetical protein Bpse17_02001091 [Bu...   103   5e-20 
ref|ZP_01324893.1|  hypothetical protein BpseP_03001343 [Bur...   103   5e-20 
ref|YP_333194.1|  putative fimbriae-related protein [Burkhol...   103   5e-20 
ref|YP_108624.1|  putative fimbriae-related protein [Burkhol...   103   5e-20 
ref|ZP_01319053.1|  hypothetical protein Bpse1_03001465 [Bur...   103   5e-20 
ref|ZP_00488038.1|  COG3188: P pilus assembly protein, porin...   102   8e-20 
pdb|1ZE3|D  Chain D, Crystal Structure Of The Ternary Comple...   102   1e-19 
ref|YP_001026475.1|  fimbrial usher family protein [Burkhold...   101   2e-19 
ref|ZP_01335873.1|  hypothetical protein Bpse4_03001527 [Bur...   101   2e-19 
ref|ZP_00895405.1|  hypothetical protein Bpse110_02002263 [B...   101   2e-19 
ref|ZP_01329914.1|  hypothetical protein BpseS_03002042 [Bur...   101   2e-19 
ref|YP_992731.1|  fimbrial usher protein [Burkholderia malle...   101   2e-19 
emb|CAA34819.1|  unnamed protein product [Escherichia coli]       100   3e-19 
ref|ZP_01629908.1|  P pilus assembly protein porin PapC-like...   100   5e-19 
ref|YP_626160.1|  fimbrial biogenesis outer membrane usher p...   100   5e-19 
gb|AAM36296.1|  outer membrane usher protein FasD [Xanthomon...    98   3e-18 
ref|NP_641760.2|  outer membrane usher protein FasD [Xanthom...    98   3e-18 
pdb|1ZDV|A  Chain A, Solution Structure Of The Type 1 Pilus ...    98   3e-18 
gb|AAM40677.1|  outer membrane usher protein FasD [Xanthomon...    97   3e-18 
ref|YP_200619.1|  outer membrane usher protein FasD [Xanthom...    97   3e-18 
ref|NP_636753.2|  outer membrane usher protein FasD [Xanthom...    97   3e-18 
gb|AAT40855.1|  HifC [Haemophilus influenzae]                      97   3e-18 
ref|YP_450900.1|  outer membrane usher protein FasD [Xanthom...    97   3e-18 
ref|ZP_00697769.1|  COG3188: P pilus assembly protein, porin...    97   6e-18 
gb|EAJ20340.1|  unknown [environmental sequence]                   96   1e-17 
ref|ZP_00440740.1|  COG3188: P pilus assembly protein, porin...    96   1e-17 
pir||S32928  hypothetical protein psaB 3'-region - Yersinia ...    96   1e-17 
ref|ZP_00737768.1|  COG3188: P pilus assembly protein, porin...    95   2e-17 
emb|CAA12420.1|  FimD protein [Escherichia coli]                   94   3e-17 
ref|ZP_00718923.1|  COG3188: P pilus assembly protein, porin...    93   6e-17 
ref|ZP_01537036.1|  fimbrial biogenesis outer membrane usher...    93   8e-17 
ref|YP_608936.1|  type 1 pili usher protein CsuD [Pseudomona...    92   1e-16 
gb|AAT36310.1|  putative outer membrane fimbrial usher [Edwa...    92   1e-16 
ref|YP_443192.1|  fimbrial usher protein [Burkholderia thail...    92   2e-16 
gb|AAP43039.1|  CsuD [Acinetobacter baumannii]                     91   3e-16 
ref|NP_801014.1|  CsuD [Vibrio parahaemolyticus RIMD 2210633...    91   3e-16 
ref|YP_363213.1|  PapC family outer membrane usher protein [...    90   5e-16 
ref|ZP_01476085.1|  hypothetical protein VEx2w_02001284 [Vib...    90   5e-16 
gb|AAK37523.1|AF339087_4  CsuD [Vibrio parahaemolyticus]           90   7e-16 
gb|EAH75300.1|  unknown [environmental sequence]                   89   9e-16 
ref|NP_744511.1|  type 1 pili usher protein CsuD [Pseudomona...    88   3e-15 
ref|ZP_00897780.1|  type 1 pili usher protein CsuD [Pseudomo...    87   3e-15 
ref|ZP_01641611.1|  fimbrial biogenesis outer membrane usher...    87   4e-15 
gb|EAG44137.1|  unknown [environmental sequence]                   85   2e-14 
ref|YP_349398.1|  Fimbrial biogenesis outer membrane usher p...    85   2e-14 
ref|ZP_00825425.1|  COG3188: P pilus assembly protein, porin...    84   3e-14 
ref|YP_692421.1|  type 1 pili usher protein CsuD [Alcanivora...    84   4e-14 
ref|ZP_01295469.1|  hypothetical protein PaerP_01002599 [Pse...    84   4e-14 
ref|ZP_01363599.1|  hypothetical protein PaerPA_01000699 [Ps...    83   6e-14 
ref|ZP_00971385.1|  COG3188: P pilus assembly protein, porin...    83   6e-14 
ref|NP_253341.1|  hypothetical protein PA4652 [Pseudomonas a...    83   6e-14 
ref|ZP_01258507.1|  CsuD [Vibrio alginolyticus 12G01] >gi|91...    83   8e-14 
ref|YP_112838.1|  fimbrial biogenesis protein [Methylococcus...    82   1e-13 
ref|YP_793114.1|  putative type 1 pili usher protein CsuD [P...    82   1e-13 
ref|YP_745150.1|  outer membrane usher protein sefC [Granuli...    81   2e-13 
gb|EAI59341.1|  unknown [environmental sequence]                   81   3e-13 
ref|YP_972913.1|  fimbrial biogenesis outer membrane usher p...    81   3e-13 
ref|YP_001006119.1|  probable outer membrane usher protein [...    80   4e-13 
ref|YP_581092.1|  fimbrial biogenesis outer membrane usher p...    80   7e-13 
gb|AAO52824.1|  type 1 fimbrial protein [Edwardsiella tarda]       80   7e-13 
gb|ABL01705.1|  unknown [Salmonella enterica subsp. enterica...    79   1e-12 
ref|YP_547468.1|  fimbrial biogenesis outer membrane usher p...    79   1e-12 
dbj|BAE19843.1|  outer membrane usher protein [Edwardsiella ...    79   1e-12 
ref|YP_773570.1|  fimbrial biogenesis outer membrane usher p...    79   2e-12 
ref|ZP_00830739.1|  COG3188: P pilus assembly protein, porin...    79   2e-12 
ref|ZP_01590181.1|  fimbrial biogenesis outer membrane usher...    77   4e-12 
ref|ZP_00922592.1|  COG3188: P pilus assembly protein, porin...    75   1e-11 
ref|YP_368635.1|  Fimbrial biogenesis outer membrane usher p...    75   2e-11 
pdb|1ZDX|A  Chain A, Solution Structure Of The Type 1 Pilus ...    74   3e-11 
ref|YP_047825.1|  conserved hypothetical protein; putative p...    74   5e-11 
gb|ABM65808.1|  SefC [Salmonella paratyphi]                        73   7e-11 
gb|ABM65806.1|  SefC [Salmonella typhi] >gi|122005001|gb|ABM...    73   9e-11 
ref|ZP_00823135.1|  COG3188: P pilus assembly protein, porin...    72   1e-10 
ref|NP_520814.1|  PUTATIVE OUTER MEMBRANE USHER TRANSMEMBRAN...    72   2e-10 
ref|ZP_00725711.1|  COG3188: P pilus assembly protein, porin...    71   3e-10 
ref|YP_538147.1|  P pilus assembly, fimbrial Usher protein [...    71   3e-10 
ref|YP_404096.1|  hypothetical protein SDY_2536 [Shigella dy...    71   3e-10 
ref|YP_980390.1|  fimbrial biogenesis outer membrane usher p...    70   4e-10 
ref|ZP_00736736.1|  COG3188: P pilus assembly protein, porin...    70   6e-10 
ref|YP_026166.1|  predicted outer membrane export usher prot...    70   7e-10 
gb|EAH70392.1|  unknown [environmental sequence]                   69   1e-09 
ref|ZP_01379949.1|  hypothetical protein RbelO_01000740 [Ric...    69   1e-09 
ref|YP_246722.1|  P pilus assembly protein FimD [Rickettsia ...    69   1e-09 
ref|ZP_00922344.1|  COG3188: P pilus assembly protein, porin...    69   2e-09 
ref|ZP_00921499.1|  COG3188: P pilus assembly protein, porin...    69   2e-09 
ref|NP_708218.1|  hypothetical protein SF2413 [Shigella flex...    68   2e-09 
ref|ZP_00733603.1|  COG3188: P pilus assembly protein, porin...    68   3e-09 
ref|YP_309056.1|  hypothetical protein SSON_0024 [Shigella s...    67   4e-09 
ref|ZP_00982534.1|  COG3188: P pilus assembly protein, porin...    67   5e-09 
ref|ZP_01300499.1|  hypothetical protein Rgryl_01001128 [Ric...    66   1e-08 
ref|ZP_01065000.1|  hypothetical protein MED222_07220 [Vibri...    65   2e-08 
ref|ZP_00797597.1|  COG3188: P pilus assembly protein, porin...    64   3e-08 
ref|YP_070899.1|  probable outer membrane usher protein [Yer...    64   4e-08 
ref|NP_405269.1|  probable outer membrane usher protein [Yer...    64   4e-08 
ref|ZP_01175495.1|  COG3188: P pilus assembly protein, porin...    64   4e-08 
ref|ZP_01496378.1|  hypothetical protein YpseI_02001514 [Yer...    64   4e-08 
ref|ZP_01446803.1|  putative outer membrane usher transmembr...    64   5e-08 
ref|NP_671354.1|  outer membrane usher protein [Yersinia pes...    62   1e-07 
ref|ZP_01643820.1|  fimbrial biogenesis outer membrane usher...    62   2e-07 
emb|CAH04683.1|  hypothetical protein [Photobacterium damsel...    62   2e-07 
ref|YP_332631.1|  fimbrial usher protein [Burkholderia pseud...    61   3e-07 
ref|YP_107635.1|  putative fimbriae usher protein [Burkholde...    61   3e-07 
ref|ZP_00895551.1|  hypothetical protein Bpse110_02002208 [B...    61   3e-07 
ref|ZP_01487595.1|  hypothetical protein Bpse11_03000237 [Bu...    61   3e-07 
ref|ZP_00795886.1|  COG3188: P pilus assembly protein, porin...    61   3e-07 
ref|ZP_01328792.1|  hypothetical protein BpseS_03003157 [Bur...    61   3e-07 
ref|ZP_01213555.1|  hypothetical protein Bpse17_02001259 [Bu...    61   3e-07 
ref|ZP_01317348.1|  hypothetical protein Bpse1_03003268 [Bur...    61   3e-07 
ref|YP_001028936.1|  fimbrial usher protein [Burkholderia ma...    61   3e-07 
ref|YP_441421.1|  fimbrial usher protein [Burkholderia thail...    61   3e-07 
emb|CAA85730.1|  FimD protein [Escherichia coli]                   61   3e-07 
ref|ZP_00487056.1|  COG3188: P pilus assembly protein, porin...    61   3e-07 
ref|ZP_00444328.1|  COG3188: P pilus assembly protein, porin...    61   3e-07 
ref|YP_102489.1|  fimbrial usher protein [Burkholderia malle...    61   3e-07 
gb|EAK11951.1|  unknown [environmental sequence]                   60   4e-07 
ref|ZP_00713885.1|  COG3188: P pilus assembly protein, porin...    60   4e-07 
ref|NP_355933.1|  hypothetical protein AGR_L_299 [Agrobacter...    60   6e-07 
ref|ZP_00958680.1|  hypothetical protein ISM_02595 [Roseovar...    60   6e-07 
gb|AAL67414.1|AF447814_82  truncated PapC [Escherichia coli]       60   8e-07 
ref|ZP_00990424.1|  hypothetical protein V12B01_14691 [Vibri...    59   1e-06 
ref|ZP_00796680.1|  COG3188: P pilus assembly protein, porin...    59   1e-06 
ref|YP_309058.1|  hypothetical protein SSON_0026 [Shigella s...    56   8e-06 
ref|NP_085347.1|  adhesion protein, fragment [Shigella flexn...    56   8e-06 
ref|YP_774365.1|  fimbrial biogenesis outer membrane usher p...    55   1e-05 
gb|EAG47967.1|  unknown [environmental sequence]                   55   2e-05 
ref|YP_741622.1|  fimbrial biogenesis outer membrane usher p...    54   3e-05 
ref|YP_357468.1|  fimbrial biogenesis protein [Pelobacter ca...    54   4e-05 
ref|YP_369997.1|  Fimbrial biogenesis outer membrane usher p...    54   5e-05 
ref|ZP_00734256.1|  COG3188: P pilus assembly protein, porin...    54   5e-05 
ref|ZP_00713771.1|  COG3188: P pilus assembly protein, porin...    54   5e-05 
ref|ZP_01513327.1|  fimbrial biogenesis outer membrane usher...    52   1e-04 
ref|ZP_01554855.1|  fimbrial biogenesis outer membrane usher...    52   2e-04 
ref|ZP_01669387.1|  fimbrial biogenesis outer membrane usher...    50   6e-04 
ref|YP_758822.1|  fimbrial usher protein [Hyphomonas neptuni...    50   6e-04 
ref|YP_554954.1|  putative outer membrane usher protein fimD...    50   8e-04 
gb|EAG68708.1|  unknown [environmental sequence]                   49   0.001 
ref|NP_523057.1|  PROBABLE SIGNAL PEPTIDE PROTEIN [Ralstonia...    47   0.004 
ref|ZP_00942640.1|  SefC [Ralstonia solanacearum UW551] >gi|...    47   0.007 
ref|YP_401874.1|  hypothetical protein SDY_0151 [Shigella dy...    45   0.019 
gb|EAH21963.1|  unknown [environmental sequence]                   44   0.043 
ref|ZP_01043549.1|  P pilus assembly protein, porin PapC [Id...    43   0.097 

>ref|NP_415065.1| predicted outer membrane export usher protein [Escherichia coli
           K12]
 ref|AP_001179.1| predicted outer membrane export usher protein [Escherichia coli
           W3110]
 sp|P77468|SFMD_ECOLI Outer membrane usher protein sfmD precursor
 gb|AAB40730.1| FimD homolog [Escherichia coli]
 gb|AAC73634.1| predicted outer membrane export usher protein [Escherichia coli
           K12]
 dbj|BAE76309.1| predicted outer membrane export usher protein [Escherichia coli
           W3110]
          Length = 867

 Score = 1779 bits (4607), Expect = 0.0
 Identities = 867/867 (100%), Positives = 867/867 (100%)

Query: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60
           MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
Sbjct: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60

Query: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120
           NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
Sbjct: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120

Query: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180
           ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
Sbjct: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180

Query: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240
           LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
Sbjct: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240

Query: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300
           AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
Sbjct: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300

Query: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360
           IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
Sbjct: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360

Query: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420
           RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
Sbjct: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420

Query: 421 NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480
           NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
Sbjct: 421 NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480

Query: 481 AYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYW 540
           AYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYW
Sbjct: 481 AYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYW 540

Query: 541 NTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRE 600
           NTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRE
Sbjct: 541 NTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRE 600

Query: 601 NALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQA 660
           NALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQA
Sbjct: 601 NALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQA 660

Query: 661 AYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQT 720
           AYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQT
Sbjct: 661 AYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQT 720

Query: 721 GILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIG 780
           GILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIG
Sbjct: 721 GILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIG 780

Query: 781 VRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRC 840
           VRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRC
Sbjct: 781 VRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRC 840

Query: 841 IAHYVLPKQSLQQAVTVISAVCTHPGS 867
           IAHYVLPKQSLQQAVTVISAVCTHPGS
Sbjct: 841 IAHYVLPKQSLQQAVTVISAVCTHPGS 867



>ref|NP_308621.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 dbj|BAB34017.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 869

 Score = 1763 bits (4565), Expect = 0.0
 Identities = 862/869 (99%), Positives = 863/869 (99%), Gaps = 2/869 (0%)

Query: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60
           MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGT VADLSRFERG
Sbjct: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTFVADLSRFERG 60

Query: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120
           NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
Sbjct: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120

Query: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180
           ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
Sbjct: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180

Query: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240
           LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
Sbjct: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240

Query: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300
           AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
Sbjct: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300

Query: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360
           IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
Sbjct: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360

Query: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420
           RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
Sbjct: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420

Query: 421 NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480
           NWGAVSLDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
Sbjct: 421 NWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480

Query: 481 AYRRMEGYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQK 538
           AYRRMEGYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQK
Sbjct: 481 AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK 540

Query: 539 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 598
           YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
Sbjct: 541 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 600

Query: 599 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 658
           RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW
Sbjct: 601 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 660

Query: 659 QAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 718
           QAAYGTLG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
Sbjct: 661 QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 720

Query: 719 QTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 778
           QTGILTDWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
Sbjct: 721 QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 780

Query: 779 IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 838
           IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
Sbjct: 781 IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 840

Query: 839 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 867
           RCIAHYVLPKQSLQQAVTVISAVCTHPGS
Sbjct: 841 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 869



>gb|EAY47423.1| fimbrial biogenesis outer membrane usher protein [Escherichia coli
           B]
          Length = 869

 Score = 1762 bits (4563), Expect = 0.0
 Identities = 862/869 (99%), Positives = 863/869 (99%), Gaps = 2/869 (0%)

Query: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60
           MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG
Sbjct: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60

Query: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120
           NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
Sbjct: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120

Query: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180
           ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
Sbjct: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180

Query: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240
           LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
Sbjct: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240

Query: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300
           AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
Sbjct: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300

Query: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360
           IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
Sbjct: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360

Query: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420
           RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
Sbjct: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420

Query: 421 NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480
           NWGAVSLDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
Sbjct: 421 NWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480

Query: 481 AYRRMEGYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQK 538
           AYRRMEGYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQK
Sbjct: 481 AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK 540

Query: 539 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 598
           YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
Sbjct: 541 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 600

Query: 599 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 658
           RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW
Sbjct: 601 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 660

Query: 659 QAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 718
           QAAYGTLG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
Sbjct: 661 QAAYGTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 720

Query: 719 QTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 778
           QTGILTDWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
Sbjct: 721 QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 780

Query: 779 IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 838
           IGVRALITVTQG KPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
Sbjct: 781 IGVRALITVTQGRKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 840

Query: 839 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 867
           RCIAHYVLPKQSLQQAVTVISAVCTHPGS
Sbjct: 841 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 869



>ref|NP_286281.1| putative outer membrane protein, export function [Escherichia coli
           O157:H7 EDL933]
 gb|AAG54889.1|AE005234_5 putative outer membrane protein, export function [Escherichia coli
           O157:H7 EDL933]
          Length = 869

 Score = 1760 bits (4558), Expect = 0.0
 Identities = 861/869 (99%), Positives = 862/869 (99%), Gaps = 2/869 (0%)

Query: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERG 60
           MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGT VADLSRFERG
Sbjct: 1   MKIPTTTDIPQRYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTFVADLSRFERG 60

Query: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120
           NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP
Sbjct: 61  NHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFP 120

Query: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180
           ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL
Sbjct: 121 ELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPAL 180

Query: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240
           LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR
Sbjct: 181 LLNYNFTGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQR 240

Query: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300
           AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT
Sbjct: 241 AIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLT 300

Query: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360
           IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG
Sbjct: 301 IRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREG 360

Query: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420
           RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG
Sbjct: 361 RFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLG 420

Query: 421 NWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480
           NWGAVSLDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV
Sbjct: 421 NWGAVSLDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDV 480

Query: 481 AYRRMEGYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQK 538
           AYRRMEGYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQK
Sbjct: 481 AYRRMEGYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQK 540

Query: 539 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 598
           YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT
Sbjct: 541 YWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT 600

Query: 599 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 658
           RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW
Sbjct: 601 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANW 660

Query: 659 QAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 718
           QAAYGTLG GYNYDRDQHDV WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN
Sbjct: 661 QAAYGTLGVGYNYDRDQHDVXWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIEN 720

Query: 719 QTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 778
           QTGILTDWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR
Sbjct: 721 QTGILTDWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTR 780

Query: 779 IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 838
           IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS
Sbjct: 781 IGVRALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANS 840

Query: 839 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 867
           RCIAHYVLPKQSLQQAVTVISAVCTHPGS
Sbjct: 841 RCIAHYVLPKQSLQQAVTVISAVCTHPGS 869



>ref|ZP_00925647.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           101-1]
          Length = 803

 Score = 1624 bits (4206), Expect = 0.0
 Identities = 794/803 (98%), Positives = 796/803 (99%), Gaps = 2/803 (0%)

Query: 67  VYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 126
           +YRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ
Sbjct: 1   MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 60

Query: 127 NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 186
           NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF
Sbjct: 61  NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 120

Query: 187 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 246
           TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK
Sbjct: 121 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 180

Query: 247 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 306
           SELVMGDGNTGSDIFDGVGFRGVR YSSDNMYPDSQQGFAPTV GIARTAAQLTIRQNGF
Sbjct: 181 SELVMGDGNTGSDIFDGVGFRGVRFYSSDNMYPDSQQGFAPTVHGIARTAAQLTIRQNGF 240

Query: 307 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 366
           IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL
Sbjct: 241 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 300

Query: 367 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 426
           TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS
Sbjct: 301 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 360

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME
Sbjct: 361 LDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 420

Query: 487 GYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSD 544
           GYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSD
Sbjct: 421 GYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSD 480

Query: 545 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 604
           SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD
Sbjct: 481 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 540

Query: 605 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 664
           RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT
Sbjct: 541 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 600

Query: 665 LGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 724
           LG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT
Sbjct: 601 LGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 660

Query: 725 DWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 784
           DWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL
Sbjct: 661 DWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 720

Query: 785 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
           ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY
Sbjct: 721 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 780

Query: 845 VLPKQSLQQAVTVISAVCTHPGS 867
           VLPKQSLQQAVTVISAVCTHPGS
Sbjct: 781 VLPKQSLQQAVTVISAVCTHPGS 803



>ref|ZP_00715310.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B7A]
          Length = 803

 Score = 1621 bits (4197), Expect = 0.0
 Identities = 793/803 (98%), Positives = 796/803 (99%), Gaps = 2/803 (0%)

Query: 67  VYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 126
           +YRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ
Sbjct: 1   MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 60

Query: 127 NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 186
           NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF
Sbjct: 61  NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 120

Query: 187 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 246
           TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK
Sbjct: 121 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 180

Query: 247 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 306
           SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF
Sbjct: 181 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 240

Query: 307 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 366
           IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDE DGNQQNYTIPYSTVPILQREGRFKFDL
Sbjct: 241 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDEHDGNQQNYTIPYSTVPILQREGRFKFDL 300

Query: 367 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 426
           TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS
Sbjct: 301 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 360

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME
Sbjct: 361 LDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 420

Query: 487 GYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSD 544
           GYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSD
Sbjct: 421 GYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSD 480

Query: 545 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 604
           SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYT ENALD
Sbjct: 481 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTWENALD 540

Query: 605 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 664
           RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT
Sbjct: 541 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 600

Query: 665 LGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 724
           LG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT
Sbjct: 601 LGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 660

Query: 725 DWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 784
           DWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL
Sbjct: 661 DWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 720

Query: 785 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
           ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWG+GANSRCIAHY
Sbjct: 721 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGNGANSRCIAHY 780

Query: 845 VLPKQSLQQAVTVISAVCTHPGS 867
           VLPKQSLQQAVTVISAVCTHPGS
Sbjct: 781 VLPKQSLQQAVTVISAVCTHPGS 803



>ref|ZP_00722959.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 803

 Score = 1619 bits (4193), Expect = 0.0
 Identities = 793/803 (98%), Positives = 795/803 (99%), Gaps = 2/803 (0%)

Query: 67  VYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 126
           +YRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLM CFNQVLLERIGLNSSAFPELAQQQ
Sbjct: 1   MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMSCFNQVLLERIGLNSSAFPELAQQQ 60

Query: 127 NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 186
           NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF
Sbjct: 61  NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 120

Query: 187 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 246
           TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK
Sbjct: 121 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 180

Query: 247 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 306
           SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF
Sbjct: 181 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 240

Query: 307 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 366
           IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL
Sbjct: 241 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 300

Query: 367 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 426
           TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS
Sbjct: 301 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 360

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME
Sbjct: 361 LDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 420

Query: 487 GYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSD 544
           GYE  YDYDGEHRDE IIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSD
Sbjct: 421 GYEYDYDYDGEHRDELIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSD 480

Query: 545 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 604
           SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD
Sbjct: 481 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 540

Query: 605 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 664
           RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQA YGT
Sbjct: 541 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQATYGT 600

Query: 665 LGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 724
           LG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT
Sbjct: 601 LGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 660

Query: 725 DWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 784
           DWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL
Sbjct: 661 DWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 720

Query: 785 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
           ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY
Sbjct: 721 ITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 780

Query: 845 VLPKQSLQQAVTVISAVCTHPGS 867
           VLPKQSLQQAVTVISAVCTHPGS
Sbjct: 781 VLPKQSLQQAVTVISAVCTHPGS 803



>ref|ZP_00921688.1| COG3188: P pilus assembly protein, porin PapC [Shigella dysenteriae
           1012]
          Length = 805

 Score = 1617 bits (4187), Expect = 0.0
 Identities = 791/805 (98%), Positives = 795/805 (98%), Gaps = 4/805 (0%)

Query: 67  VYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 126
           +YRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ
Sbjct: 1   MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 60

Query: 127 NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 186
           NNKCINLLKAVPDATINFDFAAMRLNITIPQI+LLSSAHGYIPPEEWDEGIPALLLNYNF
Sbjct: 61  NNKCINLLKAVPDATINFDFAAMRLNITIPQISLLSSAHGYIPPEEWDEGIPALLLNYNF 120

Query: 187 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 246
           TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK
Sbjct: 121 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 180

Query: 247 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 306
           SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQG APTVRGIARTAAQLTIRQNGF
Sbjct: 181 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGVAPTVRGIARTAAQLTIRQNGF 240

Query: 307 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 366
           IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL
Sbjct: 241 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 300

Query: 367 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 426
           TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS
Sbjct: 301 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 360

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LDVTHARSQLAD SRHEGDSIRFLYAKSMNT GTNFQLMGYRYSTQGFYTLDDVAYRRME
Sbjct: 361 LDVTHARSQLADDSRHEGDSIRFLYAKSMNTLGTNFQLMGYRYSTQGFYTLDDVAYRRME 420

Query: 487 GYE----YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNT 542
           GYE    YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNT
Sbjct: 421 GYEYDYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNT 480

Query: 543 SDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENA 602
           SDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNV TKRRYTRENA
Sbjct: 481 SDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVQTKRRYTRENA 540

Query: 603 LDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAY 662
           LDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAY
Sbjct: 541 LDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAY 600

Query: 663 GTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGI 722
           GTLG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGI
Sbjct: 601 GTLGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGI 660

Query: 723 LTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVR 782
           LTDWRGYAVM YA+VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVR
Sbjct: 661 LTDWRGYAVMPYASVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVR 720

Query: 783 ALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIA 842
           ALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIA
Sbjct: 721 ALITVTQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIA 780

Query: 843 HYVLPKQSLQQAVTVISAVCTHPGS 867
           HYVLPKQSLQQAVTVISAVCTHPGS
Sbjct: 781 HYVLPKQSLQQAVTVISAVCTHPGS 805



>ref|ZP_00709415.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B171]
 ref|ZP_00729306.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E22]
          Length = 754

 Score = 1506 bits (3899), Expect = 0.0
 Identities = 736/746 (98%), Positives = 738/746 (98%), Gaps = 2/746 (0%)

Query: 67  VYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 126
           +YRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ
Sbjct: 1   MYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ 60

Query: 127 NNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNF 186
           NNKCINLLKAVPDATINFDFAAMRLNITIPQI LLSSAHGYIPPEEWDEGIPALLLNYNF
Sbjct: 61  NNKCINLLKAVPDATINFDFAAMRLNITIPQITLLSSAHGYIPPEEWDEGIPALLLNYNF 120

Query: 187 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 246
           TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK
Sbjct: 121 TGNRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLK 180

Query: 247 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 306
           SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF
Sbjct: 181 SELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGF 240

Query: 307 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 366
           IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL
Sbjct: 241 IIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDL 300

Query: 367 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 426
           TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS
Sbjct: 301 TAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVS 360

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LDVTHARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME
Sbjct: 361 LDVTHARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 420

Query: 487 GYE--YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSD 544
           GYE  YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSD
Sbjct: 421 GYEYDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSD 480

Query: 545 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 604
           SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD
Sbjct: 481 SDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALD 540

Query: 605 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGT 664
           RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAY T
Sbjct: 541 RAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYAT 600

Query: 665 LGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 724
           LG GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT
Sbjct: 601 LGVGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILT 660

Query: 725 DWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 784
           DWRGYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL
Sbjct: 661 DWRGYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRAL 720

Query: 785 ITVTQGGKPVPFGSLVRENSTGITSM 810
           ITVTQGGKPVPFGSLVRENS GITSM
Sbjct: 721 ITVTQGGKPVPFGSLVRENSIGITSM 746



>ref|ZP_00702862.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E24377A]
          Length = 751

 Score = 1498 bits (3878), Expect = 0.0
 Identities = 731/743 (98%), Positives = 734/743 (98%), Gaps = 2/743 (0%)

Query: 70  VDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNK 129
           +DLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNK
Sbjct: 1   MDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNK 60

Query: 130 CINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN 189
           CINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN
Sbjct: 61  CINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN 120

Query: 190 RGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSEL 249
           RGNGNDSYFFSE SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSEL
Sbjct: 121 RGNGNDSYFFSEFSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSEL 180

Query: 250 VMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIY 309
           VMGDGNTGSDIFDGVGFRG+RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIY
Sbjct: 181 VMGDGNTGSDIFDGVGFRGIRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIY 240

Query: 310 QSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAG 369
           QSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAG
Sbjct: 241 QSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAG 300

Query: 370 DFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDV 429
           DFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWG VSLDV
Sbjct: 301 DFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGTVSLDV 360

Query: 430 THARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE 489
           THARSQLAD SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE
Sbjct: 361 THARSQLADDSRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE 420

Query: 490 --YDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDT 547
             YDYDGEHRDEPIIVNYHNLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSDSDT
Sbjct: 421 YDYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDT 480

Query: 548 WYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAY 607
           WYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAY
Sbjct: 481 WYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAY 540

Query: 608 ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGG 667
           ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAY TLG 
Sbjct: 541 ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYATLGV 600

Query: 668 GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR
Sbjct: 601 GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 660

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           GYAVM YATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV
Sbjct: 661 GYAVMPYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 720

Query: 788 TQGGKPVPFGSLVRENSTGITSM 810
           TQGGKPVPFGSLVRENS GITSM
Sbjct: 721 TQGGKPVPFGSLVRENSIGITSM 743



>ref|ZP_00704815.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli HS]
          Length = 721

 Score = 1454 bits (3764), Expect = 0.0
 Identities = 711/721 (98%), Positives = 713/721 (98%), Gaps = 2/721 (0%)

Query: 149 MRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG 208
           MRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG
Sbjct: 1   MRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG 60

Query: 209 PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG 268
           PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG
Sbjct: 61  PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG 120

Query: 269 VRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS 328
           +RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS
Sbjct: 121 IRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS 180

Query: 329 NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA 388
           NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA
Sbjct: 181 NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA 240

Query: 389 LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIR 448
           LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWG VSLDVTHARSQLAD SRHEGDSIR
Sbjct: 241 LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGTVSLDVTHARSQLADDSRHEGDSIR 300

Query: 449 FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYD--GEHRDEPIIVNYH 506
           FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYD  GEHRDEPIIVNYH
Sbjct: 301 FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDYDGEHRDEPIIVNYH 360

Query: 507 NLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF 566
           NLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF
Sbjct: 361 NLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF 420

Query: 567 SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV 626
           SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV
Sbjct: 421 SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV 480

Query: 627 GGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGV 686
           GGTLLEGHNLSYHVSQGDTSNNGYTGSATAN QAAYGTLG GYNYDRDQHDVNWQLSGGV
Sbjct: 481 GGTLLEGHNLSYHVSQGDTSNNGYTGSATANLQAAYGTLGVGYNYDRDQHDVNWQLSGGV 540

Query: 687 VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALD 746
           VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVM YATVYRYNRIALD
Sbjct: 541 VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMPYATVYRYNRIALD 600

Query: 747 TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTG 806
           TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG KPVPFGSLVRENSTG
Sbjct: 601 TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGRKPVPFGSLVRENSTG 660

Query: 807 ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG 866
           ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG
Sbjct: 661 ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG 720

Query: 867 S 867
           S
Sbjct: 721 S 721



>ref|ZP_00736906.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           53638]
          Length = 721

 Score = 1453 bits (3762), Expect = 0.0
 Identities = 710/721 (98%), Positives = 712/721 (98%), Gaps = 2/721 (0%)

Query: 149 MRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG 208
           MRLNITI QIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG
Sbjct: 1   MRLNITISQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDSYFFSELSGINIG 60

Query: 209 PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG 268
           PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG
Sbjct: 61  PWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRG 120

Query: 269 VRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS 328
           +RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS
Sbjct: 121 IRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSS 180

Query: 329 NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA 388
           NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA
Sbjct: 181 NGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTA 240

Query: 389 LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIR 448
           LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWG VSLDVTHARSQLAD SRHEGDSIR
Sbjct: 241 LGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGTVSLDVTHARSQLADDSRHEGDSIR 300

Query: 449 FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYD--GEHRDEPIIVNYH 506
           FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYD  GEHRDEPIIVNYH
Sbjct: 301 FLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDYDGEHRDEPIIVNYH 360

Query: 507 NLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF 566
           NLRFSRKDRLQLN+SQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF
Sbjct: 361 NLRFSRKDRLQLNISQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF 420

Query: 567 SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV 626
           SWNESVG PDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV
Sbjct: 421 SWNESVGNPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV 480

Query: 627 GGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGV 686
           GGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLG GYNYDRDQHDVNWQLSGGV
Sbjct: 481 GGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGVGYNYDRDQHDVNWQLSGGV 540

Query: 687 VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALD 746
           VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVM YATVYRYNRIALD
Sbjct: 541 VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMPYATVYRYNRIALD 600

Query: 747 TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTG 806
           TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG KPVPFGSLVRENSTG
Sbjct: 601 TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGRKPVPFGSLVRENSTG 660

Query: 807 ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG 866
           ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG
Sbjct: 661 ITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVCTHPG 720

Query: 867 S 867
           S
Sbjct: 721 S 721



>emb|CAD56973.1| outer membrane usher protein [Citrobacter freundii]
          Length = 873

 Score = 1318 bits (3411), Expect = 0.0
 Identities = 609/851 (71%), Positives = 736/851 (86%), Gaps = 2/851 (0%)

Query: 17  LAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRND 76
           LAG+  S+LA L   LS+ ESYFNPAFL  +  +VADLSRFE+GNHQP GVYRVD+WRND
Sbjct: 18  LAGVALSTLAALFPSLSHGESYFNPAFLSADTATVADLSRFEKGNHQPEGVYRVDIWRND 77

Query: 77  EFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKA 136
           EF+ +QDI F ++    G+KSGGLMPCF    ++R+G+N +AFP L++  N+ CINL +A
Sbjct: 78  EFVATQDIRFTTSAGKAGEKSGGLMPCFGLDWVKRLGVNIAAFPALSKDANDTCINLPEA 137

Query: 137 VPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGNDS 196
           +P + I FDF+ +RLN+++PQ ++L+SA GYIPPEEWDEGIPA L+NY+FTG+RG+  DS
Sbjct: 138 IPGSEIAFDFSTLRLNVSLPQASMLNSARGYIPPEEWDEGIPAALVNYSFTGSRGSDTDS 197

Query: 197 YFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNT 256
           YF S LSG+N GPWRLRNNG+W+Y +G+GYHS+ W NIGTW+QRAIIPLK ELVMGD NT
Sbjct: 198 YFLSMLSGLNYGPWRLRNNGAWSYSKGDGYHSQSWKNIGTWLQRAIIPLKGELVMGDSNT 257

Query: 257 GSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPG 316
           G+D+FD VGFRG RLYSSD+MYPDS QG+APTVRGIARTAA+LTIRQNG++IYQSYVSPG
Sbjct: 258 GNDVFDSVGFRGARLYSSDSMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSYVSPG 317

Query: 317 AFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNS 376
           AF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQREGRFK+D+ AGDFRSGNS
Sbjct: 318 AFSITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRFKYDVVAGDFRSGNS 377

Query: 377 QQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQL 436
           QQSSPFFFQGT + GLP+ +TAYGGTQL++ YTA +LG GRNLG+WGAVS+D+THARSQL
Sbjct: 378 QQSSPFFFQGTLIAGLPEGYTAYGGTQLASRYTAVVLGTGRNLGDWGAVSVDLTHARSQL 437

Query: 437 ADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYD--G 494
           AD S H+G S+RFLYAKS+N FGTNFQL+GYRYST+GFYTLDDVAYR MEGYEY+YD  G
Sbjct: 438 ADDSTHQGQSLRFLYAKSLNNFGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYEYEYDSEG 497

Query: 495 EHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYT 554
              D P + +YHNL +S+K R Q+N+SQ+L D+GSLY+SG+ Q YWNTSD++TWYQ+GY 
Sbjct: 498 NRHDVPDVKSYHNLSYSKKGRFQINISQNLGDYGSLYVSGSQQTYWNTSDTNTWYQLGYA 557

Query: 555 SSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANR 614
           S W GISYSLS+SWNESVGI D +RIV  N+S+PF++L+ RRY+R++A DR YA+FNANR
Sbjct: 558 SGWQGISYSLSWSWNESVGISDTDRIVAFNMSIPFSLLSGRRYSRDSAFDRTYATFNANR 617

Query: 615 NSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRD 674
           NSNGQNSW +G+GGTLL+G NLSY V+QG +S NGY+G+A+ANWQAAYGTLG GYNYDRD
Sbjct: 618 NSNGQNSWQSGIGGTLLDGRNLSYSVNQGHSSTNGYSGNASANWQAAYGTLGVGYNYDRD 677

Query: 675 QHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLY 734
           QHD NWQLSGGVVGH +GITLSQPLGDTNVLIKAPGA GVRIENQTG+ TDWRGYAVM Y
Sbjct: 678 QHDYNWQLSGGVVGHADGITLSQPLGDTNVLIKAPGAQGVRIENQTGVQTDWRGYAVMPY 737

Query: 735 ATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPV 794
           ATVYRYNR+ALDTN+M N+ DVE N+SSVVPTQGALVRA FDTRIGVRALIT    GKPV
Sbjct: 738 ATVYRYNRVALDTNSMNNNTDVENNVSSVVPTQGALVRAAFDTRIGVRALITAKHAGKPV 797

Query: 795 PFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQA 854
           PFGS+VREN++G+TSMVG+DGQ+YLSG PL GELL+QWG+GAN+RC+A Y LP++SL+QA
Sbjct: 798 PFGSIVRENTSGVTSMVGEDGQIYLSGLPLKGELLIQWGEGANARCVARYALPEESLKQA 857

Query: 855 VTVISAVCTHP 865
           VT+ +  C  P
Sbjct: 858 VTLTNVTCESP 868



>ref|NP_459541.1| outer membrane usher protein precursor [Salmonella typhimurium LT2]
 sp|P37924|FIMD_SALTY Outer membrane usher protein fimD precursor
 gb|AAL19500.1| outer membrane usher protein [Salmonella typhimurium LT2]
          Length = 870

 Score = 1289 bits (3336), Expect = 0.0
 Identities = 605/857 (70%), Positives = 719/857 (83%), Gaps = 2/857 (0%)

Query: 13  YTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDL 72
           Y   L+ +  S LA L    S  ESYFNPAFL  +  SVADLSRFE+GNHQP G+YRVD+
Sbjct: 14  YVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDI 73

Query: 73  WRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCIN 132
           WRNDEF+ +QDI FE+    TGDKSGGLMPCF    ++R+G+N++AFP   +  +  CI+
Sbjct: 74  WRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIH 133

Query: 133 LLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN 192
           L + +P A + FDFA+MRLNI++PQ +LL+SA GYIPPEEWDEGIPA L+NY+FTG+RG 
Sbjct: 134 LPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGT 193

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMG 252
            +DSYF S LSG+N GPWRLRNNG+WNY +G+GYHS++WNNIGTWVQRAIIPLKSELVMG
Sbjct: 194 DSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMG 253

Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
           D NTG+D+FD VGFRG RLYSSDNMYPDS QG+APTVRGIARTAA+LTIRQNG++IYQSY
Sbjct: 254 DSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSY 313

Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
           VSPGAF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQREGR K+DL AGDFR
Sbjct: 314 VSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFR 373

Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
           SGNSQQSSPFFFQGT + GLP   TAYGGTQL+  Y A ++G GRNLG+WGAVS+DVTHA
Sbjct: 374 SGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHA 433

Query: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
           RSQLAD S H+G S+RFLYAKS+N +GTNFQL+GYRYST+GFYTLDDVAYR MEGY+Y+Y
Sbjct: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493

Query: 493 --DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
             DG     P+  +YHNLR+S+K R Q+N+SQ+L D+GSLY+SG+ Q YWNT+D++TWYQ
Sbjct: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQ 553

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY S W GISYSLS+SW+ESVG    +RI+  N+SVPF+VLT RRY R+  LDR YA+F
Sbjct: 554 LGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATF 613

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYN 670
           NANRN +G NSW  GVGGTLLEG NLSY V+QG +S+NGY+GSA+A+WQA YGTLG GYN
Sbjct: 614 NANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASASWQATYGTLGVGYN 673

Query: 671 YDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYA 730
           YDRDQHD NWQLSGGVVGH +GIT SQPLGDTNVLIKAPGA GVRIENQTG+ TDWRGYA
Sbjct: 674 YDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYA 733

Query: 731 VMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG 790
           VM YATVYRYNR+ALDTNTM N  DVE N+SSVVPT+GALVRA FDTRIGVRA+IT   G
Sbjct: 734 VMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLG 793

Query: 791 GKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           G+P+PFG++VRE ++GITSMVGDDGQ+YLSG PL GEL +QWG+G N+RCIA Y L + S
Sbjct: 794 GRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDS 853

Query: 851 LQQAVTVISAVCTHPGS 867
           L+QA+T+ SA C  P S
Sbjct: 854 LKQAITIASATCIRPAS 870



>ref|YP_215572.1| outer membrane usher protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gb|AAX64491.1| outer membrane usher protein [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 872

 Score = 1286 bits (3328), Expect = 0.0
 Identities = 606/859 (70%), Positives = 717/859 (83%), Gaps = 4/859 (0%)

Query: 13  YTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDL 72
           Y   L+ +  S L  L    S  ESYFNPAFL  +  SVADLSRFE+GNHQP G+YRVD+
Sbjct: 14  YVSPLSSVALSVLVALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDI 73

Query: 73  WRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCIN 132
           WRNDEF+ +QDI FE+    TGDKSGGLMPCF    ++R+G+N++AFP   +  +  CI+
Sbjct: 74  WRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIH 133

Query: 133 LLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN 192
           L + +P A + FDFA+MRLNI++PQ +LL+SA GYIPPEEWDEGIPA L+NY+FTG+RG 
Sbjct: 134 LPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGT 193

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMG 252
            +DSYF S LSG+N GPWRLRNNG+WNY +G+GYHS++WNNIGTWVQRAIIPLKSELVMG
Sbjct: 194 DSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMG 253

Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
           D NTG+D+FD VGFRG RLYSSDNMYPDS QG+APTVRGIARTAA+LTIRQNG++IYQSY
Sbjct: 254 DSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSY 313

Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
           VSPGAF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQREGR K+DL AGDFR
Sbjct: 314 VSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFR 373

Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
           SGNSQQSSPFFFQGT + GLP   TAYGGTQL+  Y A ++G GRNLG+WGAVS+DVTHA
Sbjct: 374 SGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHA 433

Query: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
           RSQLAD S H+G S+RFLYAKS+N +GTNFQL+GYRYST+GFYTLDDVAYR MEGY+Y+Y
Sbjct: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493

Query: 493 --DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
             DG     P+  +YHNLR+S+K R Q+N+SQ+L D+GSLY+SG+ Q YWNT+D++TWYQ
Sbjct: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQ 553

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY S W GISYSLS+SWNESVGI   +RI+  N+SVPF+VLT RRY R+  LDR YA+F
Sbjct: 554 LGYASGWQGISYSLSWSWNESVGISGADRILAFNMSVPFSVLTGRRYARDTLLDRTYATF 613

Query: 611 NANRNSN--GQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGG 668
           NANRN N  G NSW  GVGGTLLEG NLSY V+QG +S N Y+GSA+A+WQA YGTLG G
Sbjct: 614 NANRNRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSTNSYSGSASASWQATYGTLGVG 673

Query: 669 YNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRG 728
           YNYDRDQHD NWQLSGGVVGH +GIT SQPLGDTNVLIKAPGA GVRIENQTG+ TDWRG
Sbjct: 674 YNYDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRG 733

Query: 729 YAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVT 788
           YAVM YATVYRYNR+ALDTNTM N  DVE N+SSVVPT+GALVRA FDTRIGVRA+IT  
Sbjct: 734 YAVMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITAR 793

Query: 789 QGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPK 848
            GG+P+PFG++VRE ++GITSMVGDDGQ+YLSG PL GEL +QWG+G N+RCIA Y L +
Sbjct: 794 LGGRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAE 853

Query: 849 QSLQQAVTVISAVCTHPGS 867
            SL+QA+T+ SA C  P S
Sbjct: 854 DSLKQAITIASATCIRPSS 872



>gb|AAA75419.1| FimD [Salmonella typhimurium]
          Length = 870

 Score = 1285 bits (3325), Expect = 0.0
 Identities = 603/857 (70%), Positives = 717/857 (83%), Gaps = 2/857 (0%)

Query: 13  YTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDL 72
           Y   L+ +  S LA L    S  ESYFNPAFL  +  SVADLSRFE+GNHQP G+YRVD+
Sbjct: 14  YVSPLSSVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDI 73

Query: 73  WRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCIN 132
           WRNDEF+ +QDI FE+    TGDKSGGLMPCF    ++R+G+N++AFP   +  +  CI+
Sbjct: 74  WRNDEFVATQDIRFEAGAVGTGDKSGGLMPCFTPEWIKRLGVNTAAFPVSDKGVDTTCIH 133

Query: 133 LLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN 192
           L + +P A + FDFA+MRLNI++PQ +LL+SA GYIPPEEWDEGIPA L+NY+FTG+RG 
Sbjct: 134 LPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGT 193

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMG 252
            +DSYF S LSG+N GPWRLRNNG+WNY +G+GYHS++WNNIGTWVQRAIIPLKSELVMG
Sbjct: 194 DSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMG 253

Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
           D NTG+D+FD  GFRG RLYSSDNMYPDS QG+APTVRGIARTAA+LTIRQNG++IYQSY
Sbjct: 254 DSNTGNDVFDSFGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSY 313

Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
           VSPGAF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQRE R K+DL AGDFR
Sbjct: 314 VSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREARVKYDLVAGDFR 373

Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
           SGNSQQSSPFFFQGT + GLP   TAYGGTQL+  Y A ++G GRNLG+WGAVS+DVTHA
Sbjct: 374 SGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGRNLGDWGAVSVDVTHA 433

Query: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
           RSQLAD S H+G S+RFLYAKS+N +GTNFQL+GYRYST+GFYTLDDVAYR MEGY+Y+Y
Sbjct: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493

Query: 493 --DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
             DG     P+  +YHNLR+S+K R Q+N+SQ+L D+GSLY+SG+ Q YWNT+D++TWYQ
Sbjct: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQ 553

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY S W GISYSLS+SW+ESVG    +RI+  N+SVPF+VLT RRY R+  LDR YA+F
Sbjct: 554 LGYASGWQGISYSLSWSWSESVGSSGADRILAFNMSVPFSVLTGRRYARDTILDRTYATF 613

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYN 670
           NANRN +G NSW  GVGGTLLEG NLSY V+QG +S+NGY+GSA+A+WQA YGTLG GYN
Sbjct: 614 NANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSSNGYSGSASASWQATYGTLGVGYN 673

Query: 671 YDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYA 730
           YDRDQHD NWQLSGGVVGH +GIT SQPLGDTNVLIKAPGA GVRIENQTG+ TDWRGYA
Sbjct: 674 YDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYA 733

Query: 731 VMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG 790
           VM YATVYRYNR+ALDTNTM N  DVE N+SSVVPT+GALVRA FDTRIGVRA+IT   G
Sbjct: 734 VMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLG 793

Query: 791 GKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           G+P+PFG++VRE ++GITSMVGDDGQ+YLSG PL GEL +QWG+G N+RCIA Y L + S
Sbjct: 794 GRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDS 853

Query: 851 LQQAVTVISAVCTHPGS 867
           L+QA+T+ SA C  P S
Sbjct: 854 LKQAITIASATCIRPAS 870



>ref|YP_151380.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gb|AAV78068.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
          Length = 870

 Score = 1283 bits (3320), Expect = 0.0
 Identities = 601/857 (70%), Positives = 716/857 (83%), Gaps = 2/857 (0%)

Query: 13  YTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDL 72
           Y   L G+  S LA L    S  ESYFNPAFL  +  SVADLSRFE+G HQP G+YRVD+
Sbjct: 14  YVSPLNGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGYHQPPGIYRVDI 73

Query: 73  WRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCIN 132
           WRNDEF+ +QDI FE+     GDKSGGLMPCF    ++R+G+N++ FP   +  +  CI+
Sbjct: 74  WRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPEWIKRLGVNTAVFPVSDKGVDTSCIH 133

Query: 133 LLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN 192
           L + +P A + FDFA+MRLNI++PQ +LL+SA GYIPPEEWDEGIPA L+NY+FTG+RG 
Sbjct: 134 LPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGT 193

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMG 252
            +DSYF S LSG+N GPWRLRNNG+WNY +G+GYHS++WNNIGTWVQRAIIPLKSELVMG
Sbjct: 194 DSDSYFLSLLSGLNYGPWRLRNNGAWNYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMG 253

Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
           D NTG+D+FD VGFRG RLYSSDNMYPDS QG+APTVRGIARTAA+LTIRQNG++IYQ+Y
Sbjct: 254 DSNTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQNY 313

Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
           VSPGAF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQREGR K+DL AGDFR
Sbjct: 314 VSPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFR 373

Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
           SGNSQQSSPFFFQGT + GLP   TAYGGTQL+  Y A ++G G+NLG+WGAVS+DVTHA
Sbjct: 374 SGNSQQSSPFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHA 433

Query: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
           RSQLAD S H+G S+RFLYAKS+N +GTNFQL+GYRYST+GFYTLDDVAYR MEGY+Y+Y
Sbjct: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493

Query: 493 --DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
             DG     P+  +YHNLR+S+K R Q+N+SQ+L D+GSLY+SG+ Q YWNT+D++TWYQ
Sbjct: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGDYGSLYLSGSQQNYWNTADTNTWYQ 553

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY S W  ISYSLS+SWNESVGI   +RI+  N+S PF+VLT RRY R+  LDR YA+F
Sbjct: 554 LGYASGWQDISYSLSWSWNESVGISGADRILAFNMSAPFSVLTGRRYARDTILDRTYATF 613

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYN 670
           NANRN +G NSW +GVGGTLLEG NLSY V+QG +S NGY+GSA+A+WQA YGTLG GYN
Sbjct: 614 NANRNRDGDNSWQSGVGGTLLEGRNLSYSVTQGRSSTNGYSGSASASWQATYGTLGVGYN 673

Query: 671 YDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYA 730
           YDRDQHD NWQLSGGVVGH +GIT SQPLGDTNVLIKAPGA GVRIENQTG+ TDWRGYA
Sbjct: 674 YDRDQHDYNWQLSGGVVGHADGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYA 733

Query: 731 VMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG 790
           VM YATVYRYNR+ALDTNTM N  DVE N+SSVVPT+GALVRA FDTRIGVRA+IT   G
Sbjct: 734 VMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLG 793

Query: 791 GKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           G+P+PFG++VRE ++GITSMVGDDGQ+YLSG PL GEL +QWG+G N+RCIA Y L + S
Sbjct: 794 GRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAENS 853

Query: 851 LQQAVTVISAVCTHPGS 867
           L+QA+T++SA C  P S
Sbjct: 854 LKQAITIVSATCIRPAS 870



>ref|NP_455135.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 ref|NP_806051.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
 pir||AB0570 outer membrane usher protein FimD precursor fimD [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 emb|CAD05028.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Typhi]
 gb|AAO69911.1| outer membrane usher protein FimD precursor [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
          Length = 870

 Score = 1275 bits (3299), Expect = 0.0
 Identities = 598/857 (69%), Positives = 716/857 (83%), Gaps = 2/857 (0%)

Query: 13  YTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDL 72
           Y   L+G+  S LA L    S  ESYFNPAFL  +  SVADLSRFE+GNHQP G+YRVD+
Sbjct: 14  YVSPLSGVALSVLAALCPLTSRGESYFNPAFLSADTASVADLSRFEKGNHQPPGIYRVDI 73

Query: 73  WRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCIN 132
           WRNDEF+ +QDI FE+     GDKSGGLMPCF    ++R+G+N++ FP   +  +  CI+
Sbjct: 74  WRNDEFVATQDIRFEAGAVGAGDKSGGLMPCFTPERIKRLGVNTAVFPVSDKGVDTTCIH 133

Query: 133 LLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN 192
           L + +P A + FDFA+MRLNI++PQ +LL+SA GYIPPEEWDEGIPA L+NY+FTG+RG 
Sbjct: 134 LPEKIPGAEVAFDFASMRLNISLPQASLLNSARGYIPPEEWDEGIPAALINYSFTGSRGT 193

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMG 252
            +DSYF S LSG+N GPWRLRNNG+W+Y +G+GYHS++WNNIGTWVQRAIIPLKSELVMG
Sbjct: 194 DSDSYFLSLLSGLNYGPWRLRNNGAWSYSKGDGYHSQRWNNIGTWVQRAIIPLKSELVMG 253

Query: 253 DGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSY 312
           D +TG+D+FD VGFRG RLYSSDNMYPDS QG+APTVRGIARTAA+LTIRQNG++IYQSY
Sbjct: 254 DSHTGNDVFDSVGFRGARLYSSDNMYPDSLQGYAPTVRGIARTAAKLTIRQNGYVIYQSY 313

Query: 313 VSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFR 372
           V PGAF ITDL+PTSS+GDL+VT+DE+DG+QQ YT+PYSTVP+LQREGR K+DL AGDFR
Sbjct: 314 VPPGAFAITDLNPTSSSGDLEVTVDEKDGSQQRYTVPYSTVPLLQREGRVKYDLVAGDFR 373

Query: 373 SGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHA 432
           SGNSQQSS FFFQGT + GLP   TAYGGTQL+  Y A ++G G+NLG+WGAVS+DVTHA
Sbjct: 374 SGNSQQSSLFFFQGTVIAGLPAGLTAYGGTQLADRYRAVVVGAGQNLGDWGAVSVDVTHA 433

Query: 433 RSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY 492
           RSQLAD S H+G S+RFLYAKS+N +GTNFQL+GYRYST+GFYTLDDVAYR MEGY+Y+Y
Sbjct: 434 RSQLADDSTHQGQSLRFLYAKSLNNYGTNFQLLGYRYSTRGFYTLDDVAYRSMEGYDYEY 493

Query: 493 --DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
             DG     P+  +YHNLR+S+K R Q+N+SQ+L ++GSLY+SG+ Q YWNT+D++TWYQ
Sbjct: 494 DSDGRRHKVPVAQSYHNLRYSKKGRFQVNISQNLGNYGSLYLSGSQQNYWNTADTNTWYQ 553

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY S W GISYSLS+SW+ESVGI   +RI+  N+SVPF+VLT RRY R+  LDR YA+F
Sbjct: 554 LGYASGWQGISYSLSWSWSESVGISGADRILAFNMSVPFSVLTGRRYARDTILDRTYATF 613

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYN 670
           NANRN +G NSW  GVGGTLLEG NLSY V+QG +S NG++GSA+A+WQA YGTLG GYN
Sbjct: 614 NANRNRDGDNSWQTGVGGTLLEGRNLSYSVTQGRSSTNGHSGSASASWQATYGTLGVGYN 673

Query: 671 YDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYA 730
           YDRDQHD NWQLSGGVVGH +GIT SQPLGDTNVLIKAPGA GVRIENQTG+ TDWRGYA
Sbjct: 674 YDRDQHDYNWQLSGGVVGHTDGITFSQPLGDTNVLIKAPGAKGVRIENQTGVKTDWRGYA 733

Query: 731 VMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG 790
           VM YATVYRYNR+ALDTNTM N  DVE N+SSVVPT+GALVRA FDTRIGVRA+IT   G
Sbjct: 734 VMPYATVYRYNRVALDTNTMDNHTDVENNVSSVVPTEGALVRAAFDTRIGVRAIITARLG 793

Query: 791 GKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           G+P+PFG++VRE ++GITSMVGDDGQ+YLSG PL GEL +QWG+G N+RCIA Y L + S
Sbjct: 794 GRPLPFGAIVRETASGITSMVGDDGQIYLSGLPLKGELFIQWGEGKNARCIAPYALAEDS 853

Query: 851 LQQAVTVISAVCTHPGS 867
           L+QA+T+ SA C  P S
Sbjct: 854 LKQAITIASATCIRPSS 870



>ref|ZP_01588347.1| fimbrial biogenesis outer membrane usher protein [Enterobacter sp.
           638]
 gb|EAV85464.1| fimbrial biogenesis outer membrane usher protein [Enterobacter sp.
           638]
          Length = 855

 Score = 1147 bits (2968), Expect = 0.0
 Identities = 526/852 (61%), Positives = 686/852 (80%), Gaps = 3/852 (0%)

Query: 12  RYTWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVD 71
           R+ +C   +  +  AIL   + ++ESYFNP FL ++   VADLSRFE+G+ Q  G+YRVD
Sbjct: 5   RWRYCPCALALA--AILFPQVGWSESYFNPGFLSDDTAGVADLSRFEQGHQQAPGIYRVD 62

Query: 72  LWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCI 131
           +WRN+EFIG+QD+ FE+  ++T   +GGL PC  + +L+R+G+N SAFPEL Q  ++ CI
Sbjct: 63  IWRNEEFIGTQDVRFETDEKSTAPVAGGLSPCITRAMLDRLGVNISAFPELTQVADDACI 122

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG 191
            L  A+P + I F+FA++RLNI++PQ+A+ +SA GYIPPE+WDEGIPA+LLNY+F+GN+G
Sbjct: 123 PLATAIPGSEIGFNFASLRLNISLPQVAMHNSARGYIPPEQWDEGIPAILLNYSFSGNKG 182

Query: 192 NGND-SYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELV 250
           N +D SY+ +  +G+N G WR+RN G+W   + NG    +W NI T  +R +IPLKSELV
Sbjct: 183 NDDDNSYYLNLQTGLNYGAWRVRNTGAWRATQSNGNSHREWQNISTSAERTVIPLKSELV 242

Query: 251 MGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQ 310
           +GD N+G+D+FD +GFRG+RL+SSD+MYPDS QG+APTVRGIART A++ IRQNG++IYQ
Sbjct: 243 LGDSNSGNDVFDSMGFRGLRLFSSDSMYPDSMQGYAPTVRGIARTPAKVVIRQNGYVIYQ 302

Query: 311 SYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGD 370
           SYV PGAF I+DL+PTSS+GDLDVT++E+DGN Q YT+PYSTVP+LQREGR K+DL AGD
Sbjct: 303 SYVQPGAFAISDLNPTSSSGDLDVTVEEKDGNPQRYTVPYSTVPLLQREGRVKYDLVAGD 362

Query: 371 FRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVT 430
           +RSGN  Q +PFF QGT + GL   +T YGGTQL++ YTA  +G G+NLG+WGA+S+D+T
Sbjct: 363 YRSGNRDQETPFFTQGTLITGLANGYTLYGGTQLASRYTALAIGAGKNLGDWGAMSVDLT 422

Query: 431 HARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY 490
           HARSQLAD SRHEG S+RFLYAKS+N FGTNFQL+GYRYST+GFYTLDDVA++ MEGY+Y
Sbjct: 423 HARSQLADDSRHEGQSLRFLYAKSLNDFGTNFQLLGYRYSTKGFYTLDDVAWKSMEGYQY 482

Query: 491 DYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQ 550
               +      + +YHNL +++K R QLN+SQSL D+GS+Y+SG+ Q YW TSDS  WYQ
Sbjct: 483 SDTKDDNGVADVQSYHNLTWNKKGRFQLNISQSLGDYGSVYVSGSEQTYWGTSDSSVWYQ 542

Query: 551 VGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASF 610
           +GY     G+SYS+S+SWN++VG+   ++I   NVSVPF++ T+  Y R++A DRAYA+ 
Sbjct: 543 LGYAGGVQGVSYSVSWSWNQAVGMGGTDKIASFNVSVPFSLFTRHGYRRDSAFDRAYATA 602

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYN 670
           +A+RNS G +SW  G+ GTLLE  NL+Y V+QG TSNNG +GSA+ANWQAAYGT G GYN
Sbjct: 603 SASRNSEGDSSWQTGISGTLLEDRNLTYSVTQGHTSNNGGSGSASANWQAAYGTFGAGYN 662

Query: 671 YDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYA 730
           Y R+QHD+NWQ+SGGVVGH +G+T SQPLGDTNVLIKAPGA GV +ENQTG+ TDWRGYA
Sbjct: 663 YSREQHDLNWQMSGGVVGHSDGVTFSQPLGDTNVLIKAPGASGVNVENQTGVKTDWRGYA 722

Query: 731 VMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQG 790
           VM YATVYRYNR+ALDTN+M N+ D+E N+SSVVPT+GALVRA+FD RIGVRAL+TV +G
Sbjct: 723 VMPYATVYRYNRVALDTNSMNNNTDIENNVSSVVPTKGALVRASFDARIGVRALLTVMRG 782

Query: 791 GKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
            +PVPFG++VRE  +G+TSMVGDDGQ+YLSG PL+G LL+QWG+G+N++C A Y LP++S
Sbjct: 783 NQPVPFGAVVRETQSGVTSMVGDDGQIYLSGLPLAGTLLIQWGNGSNAQCRAPYTLPEES 842

Query: 851 LQQAVTVISAVC 862
           LQQA+T+    C
Sbjct: 843 LQQAITLKEIRC 854



>ref|ZP_01588405.1| fimbrial biogenesis outer membrane usher protein [Enterobacter sp.
           638]
 gb|EAV85522.1| fimbrial biogenesis outer membrane usher protein [Enterobacter sp.
           638]
          Length = 877

 Score =  810 bits (2092), Expect = 0.0
 Identities = 405/845 (47%), Positives = 568/845 (67%), Gaps = 20/845 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE--- 91
           AE YFNPAFL E    VAD+SRFE    Q AG YRVD++ N++FI S D+ F++  +   
Sbjct: 35  AEEYFNPAFLSEGKGQVADISRFENDAGQAAGTYRVDIFLNNDFIASHDVEFKNRKDVES 94

Query: 92  -NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMR 150
             T     GL+ C +   +  +GL+ S   +       +CIN+   +  A  +FDF   R
Sbjct: 95  PGTAPDDTGLIACLSTKTMSDLGLDLSIPADKKSAATGECINIASLIEGAKASFDFGHQR 154

Query: 151 LNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG----NGNDSYFFSELSGIN 206
           L++++PQ+AL SSA GYIPPE+WD+GI ALLLNY+F G++     N + S F    SGIN
Sbjct: 155 LDLSVPQVALKSSARGYIPPEKWDQGINALLLNYSFNGSKSKASNNKSSSNFLGLNSGIN 214

Query: 207 IGPWRLRNNGSWNYFRG-NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVG 265
           +GPWR R   ++N     NG  S +W +I  +V+R IIPLK EL  GD  T  ++FD V 
Sbjct: 215 VGPWRYREYSTFNRSTSSNGETSNKWQHISGYVERTIIPLKGELTAGDSYTSGEVFDSVS 274

Query: 266 FRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHP 325
           FRGV+L S DNM PDS +GFAPTVRGIA++ AQ+TI+QNG+++YQ+YV+PGAF I DL P
Sbjct: 275 FRGVQLASDDNMLPDSLKGFAPTVRGIAKSNAQVTIKQNGYVVYQTYVAPGAFSIEDLFP 334

Query: 326 TSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQ 385
           TSS+GDL V + E+DG+  +Y++PYS VP+LQREGR K+ +TA ++R+ N +Q    F Q
Sbjct: 335 TSSSGDLMVEVKEQDGSIFSYSVPYSAVPMLQREGRVKYSVTAANYRTSNEEQDEVAFGQ 394

Query: 386 GTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGD 445
           GT   GLP  FT YGGTQLS NY A   G+G N+GNWGA S D+THA S L D S+H G+
Sbjct: 395 GTLTWGLPHGFTLYGGTQLSNNYHALAAGVGLNMGNWGAFSTDITHANSTLIDGSQHTGN 454

Query: 446 SIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGE----HRDEPI 501
           S+R LYAKS+N  GTNFQL GYRYST G+Y+  D  Y+ M+GY  D + E    + D P 
Sbjct: 455 SVRLLYAKSLNELGTNFQLTGYRYSTSGYYSFADTTYKHMDGYNSDPENEDDDRNNDHPD 514

Query: 502 IVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGIS 561
             +Y+NL ++++ ++Q+N+SQ L   GS+Y+SG+ Q YW+T D DT  Q GY ++W  I+
Sbjct: 515 WYDYYNLFYTKRGKMQVNISQQLGQLGSIYLSGSEQTYWHTEDKDTLVQFGYNTAWHDIN 574

Query: 562 YSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTR-ENALDRAYASFNANRNSNGQN 620
             +S+++++S G    ++++ LNVS+P   L K   T   NA   AYA+++++R++ G  
Sbjct: 575 MGVSYNYSKSTGQSLPDQMIALNVSLP---LGKWLTTEGSNASHNAYATWSSSRDNKGSV 631

Query: 621 SWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGGGYNYDRD--QHD 677
           S  AGV GTLLEG+NLSY V QG+ +   G +G+A+   Q  YG+   GYNY  +     
Sbjct: 632 SQNAGVSGTLLEGNNLSYTVQQGNGNQGAGNSGNASLAHQGGYGSSNVGYNYSDNGKSQQ 691

Query: 678 VNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATV 737
           + + ++GG+V H  G+T SQPLG+TNVLI+APGA  V+++N TG+ TDWRGYAV+ +AT 
Sbjct: 692 LTYGVAGGIVAHRQGVTFSQPLGETNVLIEAPGADRVKVDNVTGVKTDWRGYAVVPFATN 751

Query: 738 YRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFG 797
           YR NRIALDT T+G+ +D+E  +  V+PT+GALVRA+FD  +G+RAL+T+    + +PFG
Sbjct: 752 YRKNRIALDTTTLGDKVDLENAVVDVIPTKGALVRASFDAHVGIRALLTLMHNNQLIPFG 811

Query: 798 SLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTV 857
           + V  +    + +VGD+GQVYLSG    G+L VQWG+GA+  C+A Y LP+ +  +A+T 
Sbjct: 812 ATVTRDDELTSGIVGDEGQVYLSGLTPQGKLKVQWGEGADQTCVAEYKLPQAAENKALTQ 871

Query: 858 ISAVC 862
            + +C
Sbjct: 872 ANVLC 876



>ref|YP_672489.1| outer membrane usher protein FimD precursor [Escherichia coli 536]
 gb|ABG72588.1| outer membrane usher protein FimD precursor [Escherichia coli 536]
          Length = 878

 Score =  808 bits (2088), Expect = 0.0
 Identities = 402/843 (47%), Positives = 569/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT   D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N SW+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 217 IGAWRLRDNTSWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 276

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 277 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 336

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 337 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 396

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 456

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 457 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 516

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 517 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 754

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 815 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 860 AVC 862
           A C
Sbjct: 875 AEC 877



>ref|ZP_00726010.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           F11]
          Length = 863

 Score =  808 bits (2088), Expect = 0.0
 Identities = 402/843 (47%), Positives = 569/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT   D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N SW+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 202 IGAWRLRDNTSWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 261

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 262 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 321

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 322 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 381

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 382 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 441

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 442 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 501

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 502 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 561

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 562 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 619

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 620 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 679

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 680 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 739

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 740 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 799

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 800 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 859

Query: 860 AVC 862
           A C
Sbjct: 860 AEC 862



>ref|ZP_00729829.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E22]
          Length = 863

 Score =  808 bits (2087), Expect = 0.0
 Identities = 403/844 (47%), Positives = 572/844 (67%), Gaps = 21/844 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTTMIQDATAHLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYF---RGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           IG WRLR+N +W+Y    R +G    +W +I TW++R IIPL+S L +GDG T  DIFDG
Sbjct: 202 IGAWRLRDNTTWSYNSSDRSSG-SKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDG 260

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           + FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D+
Sbjct: 261 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 320

Query: 324 HPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFF 383
           +   ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P F
Sbjct: 321 YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRF 380

Query: 384 FQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHE 443
           FQ T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+
Sbjct: 381 FQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHD 440

Query: 444 GDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPII 502
           G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P  
Sbjct: 441 GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKF 500

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
            +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I++
Sbjct: 501 TDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW 560

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSW 622
           +LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + 
Sbjct: 561 TLSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTN 618

Query: 623 LAGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
           LAGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   +
Sbjct: 619 LAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQL 678

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
            + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT Y
Sbjct: 679 YYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY 738

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG+
Sbjct: 739 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGA 798

Query: 799 LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVI 858
           +V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +
Sbjct: 799 MVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQL 858

Query: 859 SAVC 862
           SA C
Sbjct: 859 SAEC 862



>ref|NP_757244.1| Outer membrane usher protein fimD precursor [Escherichia coli
           CFT073]
 gb|AAN83818.1|AE016771_329 Outer membrane usher protein fimD precursor [Escherichia coli
           CFT073]
          Length = 878

 Score =  808 bits (2086), Expect = 0.0
 Identities = 401/843 (47%), Positives = 570/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 217 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 276

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 277 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 336

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 337 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 396

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 456

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 457 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 516

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 517 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 754

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 815 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 860 AVC 862
           A C
Sbjct: 875 AEC 877



>ref|YP_543948.1| outer membrane usher protein FimD precursor [Escherichia coli
           UTI89]
 ref|YP_859948.1| outer membrane usher protein FimD precursor [Escherichia coli APEC
           O1]
 gb|ABE10417.1| outer membrane usher protein FimD precursor [Escherichia coli
           UTI89]
 gb|ABJ03824.1| outer membrane usher protein FimD precursor [Escherichia coli APEC
           O1]
          Length = 878

 Score =  807 bits (2085), Expect = 0.0
 Identities = 401/843 (47%), Positives = 569/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT   D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 217 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 276

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 277 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 336

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 337 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 396

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 456

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 457 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 516

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 517 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 754

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 815 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 860 AVC 862
           A C
Sbjct: 875 AEC 877



>emb|CAH55781.1| export and assembly outer membrane protein of type 1 fimbriae
           [Escherichia coli]
          Length = 878

 Score =  807 bits (2085), Expect = 0.0
 Identities = 401/843 (47%), Positives = 569/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT   D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAQLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N SW+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 217 IGAWRLRDNTSWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 276

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 277 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 336

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 337 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 396

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 456

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 457 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 516

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 517 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYA++ YAT YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYALLPYATEYR 754

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 815 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 860 AVC 862
           A C
Sbjct: 875 AEC 877



>ref|NP_313303.1| FimD [Escherichia coli O157:H7 str. Sakai]
 dbj|BAB38699.1| export and assembly outer membrane protein of type 1 fimbriae
           [Escherichia coli O157:H7 str. Sakai]
          Length = 878

 Score =  806 bits (2082), Expect = 0.0
 Identities = 403/844 (47%), Positives = 571/844 (67%), Gaps = 21/844 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   V DAT + D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYF---RGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           IG WRLR+N +W+Y    R +G    +W +I TW++R IIPL+S L +GDG T  DIFDG
Sbjct: 217 IGAWRLRDNTTWSYNSSDRSSG-SKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDG 275

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           + FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D+
Sbjct: 276 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 335

Query: 324 HPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFF 383
           +   ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P F
Sbjct: 336 YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRF 395

Query: 384 FQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHE 443
           FQ T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+
Sbjct: 396 FQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHD 455

Query: 444 GDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPII 502
           G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P  
Sbjct: 456 GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKF 515

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
            +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I++
Sbjct: 516 TDYYNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW 575

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSW 622
           +LS+S  ++      ++++  NV++PF+     R   ++    A AS++ + + NG+ + 
Sbjct: 576 TLSYSLTKNAWQKGRDQMLARNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTN 633

Query: 623 LAGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
           LAGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   +
Sbjct: 634 LAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQL 693

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
            + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT Y
Sbjct: 694 YYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY 753

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG+
Sbjct: 754 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGA 813

Query: 799 LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVI 858
           +V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +
Sbjct: 814 MVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQL 873

Query: 859 SAVC 862
           SA C
Sbjct: 874 SAEC 877



>ref|ZP_00708202.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli HS]
          Length = 863

 Score =  806 bits (2082), Expect = 0.0
 Identities = 400/843 (47%), Positives = 570/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYFRGN--GYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y R +       +W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 202 IGAWRLRDNTTWSYNRSDRSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 261

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 262 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 321

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 322 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 381

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 382 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 441

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 442 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 501

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 502 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 561

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 562 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 619

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 620 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 679

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL +T VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 680 YGVSGGVLAHANGVTLGQPLNETVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 739

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 740 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 799

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +  QQ +T +S
Sbjct: 800 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPERQQQLLTQLS 859

Query: 860 AVC 862
           A C
Sbjct: 860 AEC 862



>ref|ZP_00712161.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B171]
          Length = 863

 Score =  805 bits (2078), Expect = 0.0
 Identities = 400/843 (47%), Positives = 569/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 202 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 261

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 262 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 321

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 322 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 381

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 382 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 441

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 442 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 501

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 502 DYYNLAYNKRGKLQLTVTQQLGRTLTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 561

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 562 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 619

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
            GV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 620 VGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 679

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 680 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 739

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 740 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 799

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 800 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 859

Query: 860 AVC 862
           A C
Sbjct: 860 AEC 862



>ref|NP_290933.1| outer membrane protein; export and assembly of type 1 fimbriae,
           interrupted [Escherichia coli O157:H7 EDL933]
 gb|AAG59499.1|AE005662_11 outer membrane protein; export and assembly of type 1 fimbriae,
           interrupted [Escherichia coli O157:H7 EDL933]
          Length = 878

 Score =  804 bits (2077), Expect = 0.0
 Identities = 402/844 (47%), Positives = 570/844 (67%), Gaps = 21/844 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   V DAT + D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYF---RGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           IG WRLR+N +W+Y    R +G    +W +I TW++R IIPL+S L +GDG T  DIFDG
Sbjct: 217 IGAWRLRDNTTWSYNSSDRSSG-SKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDG 275

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           + FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D+
Sbjct: 276 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 335

Query: 324 HPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFF 383
           +   ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P F
Sbjct: 336 YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRF 395

Query: 384 FQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHE 443
           FQ T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+
Sbjct: 396 FQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHD 455

Query: 444 GDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPII 502
           G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P  
Sbjct: 456 GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKF 515

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
            +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I++
Sbjct: 516 TDYYNLAYNKRGKLQLTVTQQLGRSSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW 575

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSW 622
           +LS+S  ++      ++++  NV++PF+     R   ++    A AS++ + + NG+ + 
Sbjct: 576 TLSYSLTKNAWQKGRDQMLARNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTN 633

Query: 623 LAGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
           LAGV GTLLE +N SY V    + G   N+G TG AT N++  YG    GY++  D   +
Sbjct: 634 LAGVYGTLLEDNNXSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQL 693

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
            + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT Y
Sbjct: 694 YYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY 753

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG+
Sbjct: 754 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGA 813

Query: 799 LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVI 858
           +V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +
Sbjct: 814 MVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQL 873

Query: 859 SAVC 862
           SA C
Sbjct: 874 SAEC 877



>ref|NP_418737.1| outer membrane usher protein, type 1 fimbrial synthesis
           [Escherichia coli K12]
 ref|AP_004809.1| outer membrane usher protein, type 1 fimbrial synthesis
           [Escherichia coli W3110]
 sp|P30130|FIMD_ECOLI Outer membrane usher protein fimD precursor
 gb|AAA97213.1| CG Site No. 18349 [Escherichia coli]
 gb|AAC77273.1| outer membrane usher protein, type 1 fimbrial synthesis
           [Escherichia coli K12]
 dbj|BAE78310.1| outer membrane usher protein, type 1 fimbrial synthesis
           [Escherichia coli W3110]
          Length = 878

 Score =  804 bits (2077), Expect = 0.0
 Identities = 402/844 (47%), Positives = 571/844 (67%), Gaps = 21/844 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS A+ YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSADLYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   V DAT + D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYF---RGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           IG WRLR+N +W+Y    R +G    +W +I TW++R IIPL+S L +GDG T  DIFDG
Sbjct: 217 IGAWRLRDNTTWSYNSSDRSSG-SKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDG 275

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           + FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D+
Sbjct: 276 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 335

Query: 324 HPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFF 383
           +   ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ    F
Sbjct: 336 YAAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKTRF 395

Query: 384 FQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHE 443
           FQ T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+
Sbjct: 396 FQSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHD 455

Query: 444 GDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPII 502
           G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P  
Sbjct: 456 GQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKF 515

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
            +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I++
Sbjct: 516 TDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINW 575

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSW 622
           +LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + 
Sbjct: 576 TLSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTN 633

Query: 623 LAGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
           LAGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   +
Sbjct: 634 LAGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQL 693

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
            + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT Y
Sbjct: 694 YYGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEY 753

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG+
Sbjct: 754 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGA 813

Query: 799 LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVI 858
           +V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +
Sbjct: 814 MVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQL 873

Query: 859 SAVC 862
           SA C
Sbjct: 874 SAEC 877



>ref|ZP_00716248.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B7A]
          Length = 863

 Score =  803 bits (2074), Expect = 0.0
 Identities = 399/843 (47%), Positives = 568/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  + LN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMELNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 202 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 261

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 262 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 321

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 322 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 381

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 382 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 441

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 442 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 501

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 502 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 561

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 562 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 619

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
            GV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 620 VGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 679

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 680 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 739

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 740 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 799

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 800 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 859

Query: 860 AVC 862
           A C
Sbjct: 860 AEC 862



>ref|ZP_00719365.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 863

 Score =  802 bits (2071), Expect = 0.0
 Identities = 397/843 (47%), Positives = 568/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS AE YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 27  LSSAELYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 81

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   + DAT + D    RL
Sbjct: 82  NTGDSEQGIVPCLTRAQLASMGLNTASVSGMNLLADDACVPLTSMIHDATAHLDVGQQRL 141

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 142 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 201

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 202 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDGI 261

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 262 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIY 321

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 322 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 381

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H+G
Sbjct: 382 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDG 441

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 442 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 501

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++   +++
Sbjct: 502 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDSNWT 561

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 562 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 619

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
            GV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 620 VGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 679

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGG++ H NG+TL QPL +T VL+KAPGA   ++ENQTG+ TDWRGYAV+ YAT YR
Sbjct: 680 YGVSGGILAHANGVTLGQPLNETVVLVKAPGAKDAKVENQTGVRTDWRGYAVLPYATEYR 739

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 740 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 799

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 800 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 859

Query: 860 AVC 862
           A C
Sbjct: 860 AEC 862



>ref|YP_691498.1| Outer membrane usher protein fimD precursor [Shigella flexneri 5
           str. 8401]
 gb|ABF06193.1| Outer membrane usher protein fimD precursor [Shigella flexneri 5
           str. 8401]
          Length = 878

 Score =  798 bits (2060), Expect = 0.0
 Identities = 398/843 (47%), Positives = 568/843 (67%), Gaps = 19/843 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS A+ YFN  FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSADLYFNLRFLADDPQAVADLSRFENGQELPLGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   V DAT + D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVQDATAHLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYFRGNGYHSEQ--WNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGV 264
           IG WRLR+N +W+Y   +     +  W +I TW++R IIPL+S L +GDG T  DIFDG+
Sbjct: 217 IGAWRLRDNTTWSYNSSDSSSGSKNKWQHIITWIERDIIPLRSRLTLGDGYTQGDIFDGI 276

Query: 265 GFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLH 324
            FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D++
Sbjct: 277 NFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYGIYNSTVPPGPFTINDIY 336

Query: 325 PTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFF 384
              ++GDL VTI E DG+ Q +T+PYS+VP+LQREG  ++ +TAG++RSGN+QQ  P FF
Sbjct: 337 AAGNSGDLQVTIKEADGSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFF 396

Query: 385 QGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEG 444
           Q T L GLP  +T YGGTQL+  Y AF  G+G+N+   GA+S+D+T A S L D S+H+G
Sbjct: 397 QSTLLHGLPAGWTIYGGTQLADRYRAFNFGIGKNMEALGALSVDMTQANSTLPDDSQHDG 456

Query: 445 DSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPIIV 503
            S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P   
Sbjct: 457 QSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPKFT 516

Query: 504 NYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYS 563
           +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+++
Sbjct: 517 DYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDINWT 576

Query: 564 LSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWL 623
           LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ + L
Sbjct: 577 LSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMTNL 634

Query: 624 AGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           AGV GTLLE +NLSY V    + G   N+G TG AT N++  YG    GY++  D   + 
Sbjct: 635 AGVYGTLLEDNNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHSDDIKQLY 694

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + +SGGV+ H NG+TL QPL DT VL+KAPGA   ++ENQTG+ TDWRGYA++ YAT YR
Sbjct: 695 YGVSGGVLAHANGVTLGQPLNDTVVLVKAPGAKDAKVENQTGVRTDWRGYAMLPYATEYR 754

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG++
Sbjct: 755 ENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGAM 814

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
           V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +S
Sbjct: 815 VTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQLS 874

Query: 860 AVC 862
           A C
Sbjct: 875 AEC 877



>ref|YP_668230.1| F1C fimbrial usher [Escherichia coli 536]
 emb|CAC16953.2| SfaF protein [Escherichia coli]
 gb|ABG68331.1| F1C fimbrial usher [Escherichia coli 536]
          Length = 876

 Score =  776 bits (2005), Expect = 0.0
 Identities = 385/839 (45%), Positives = 554/839 (66%), Gaps = 20/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQI + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQIYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+PL+S L MGD  T  DIFDGV FRG+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVPLRSRLTMGDSYTRGDIFDGVNFRGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 341 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SR++G S RF
Sbjct: 401 YGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRYDGQSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 580

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 581 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 638

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLLE +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 639 TLLEDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 697

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 698 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 757

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 758 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 817

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++  C
Sbjct: 818 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTVSC 875



>emb|CAE55713.1| FocD protein [Escherichia coli Nissle 1917]
          Length = 876

 Score =  774 bits (1998), Expect = 0.0
 Identities = 384/839 (45%), Positives = 553/839 (65%), Gaps = 20/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+ L+S L MGD  T  DIFDGV FRG+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVSLRSRLTMGDSYTRGDIFDGVNFRGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 341 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 401 YGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRHDGQSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 580

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 581 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 638

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLL  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 639 TLLGDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 697

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 698 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 757

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 758 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 817

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++A C
Sbjct: 818 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTASC 875



>ref|NP_753156.1| F1C fimbrial usher [Escherichia coli CFT073]
 gb|AAN79699.1|AE016758_303 F1C fimbrial usher [Escherichia coli CFT073]
          Length = 892

 Score =  774 bits (1998), Expect = 0.0
 Identities = 384/839 (45%), Positives = 553/839 (65%), Gaps = 20/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 62  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 121

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 122 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 176

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 177 VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 236

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+ L+S L MGD  T  DIFDGV FRG+
Sbjct: 237 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVSLRSRLTMGDSYTRGDIFDGVNFRGI 296

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 297 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 356

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 357 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 416

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 417 YGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRHDGQSYRF 476

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 477 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 536

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 537 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 596

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 597 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 654

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLL  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 655 TLLGDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 713

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 714 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 773

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 774 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 833

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++A C
Sbjct: 834 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTASC 891



>ref|YP_540127.1| S fimbriae outer membrane usher [Escherichia coli UTI89]
 gb|ABE06596.1| S fimbriae outer membrane usher [Escherichia coli UTI89]
          Length = 892

 Score =  773 bits (1997), Expect = 0.0
 Identities = 383/839 (45%), Positives = 552/839 (65%), Gaps = 20/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 62  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 121

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 122 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 176

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 177 VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 236

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+PL+S L MGD  T  DIFDGV FRG+
Sbjct: 237 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVPLRSRLTMGDSYTRGDIFDGVNFRGI 296

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 297 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 356

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 357 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 416

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 417 YGLPAGWTVYGGAWIAERYRAFNLGMGKNMGWLGAVSLDATRANARLPDESRHDGQSYRF 476

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 477 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 536

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 537 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 596

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 597 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 654

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           T L  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 655 TSLGDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 713

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 714 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 773

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 774 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 833

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++  C
Sbjct: 834 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTVSC 891



>gb|AAV31768.1| putative outer membrane usher [Escherichia coli]
          Length = 863

 Score =  772 bits (1994), Expect = 0.0
 Identities = 397/858 (46%), Positives = 559/858 (65%), Gaps = 25/858 (2%)

Query: 15  WCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWR 74
           WC+  +    L +LP+  S A   FNPAFL  +  +VADLSRFE+G     G Y V++W 
Sbjct: 20  WCMLLL----LTLLPA-CSVAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEIWV 74

Query: 75  NDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLL 134
           ND  + S+ + F++  +N       L+PCF+   L  +G+N SA PE AQ + N C++L 
Sbjct: 75  NDSPLTSRKVTFKADEQNQ------LIPCFSLDELVTLGINKSALPEQAQAEGNNCLDLR 128

Query: 135 KAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN 194
               +     +  A RL +T PQ  L   A GYIPPEEWD GIPA+L+NY+F+GN   G+
Sbjct: 129 IWFAEVQYTPELDAQRLKLTFPQAILKHEARGYIPPEEWDNGIPAILINYDFSGNSDRGD 188

Query: 195 ---DSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVM 251
              DSY+ +  SG+N+G WR R+  +W+    +G    +  ++ + +QR IIP KSEL +
Sbjct: 189 YASDSYYLNLRSGLNLGAWRFRDYSTWSR---SGNSPGKIAHVSSTLQRVIIPFKSELTL 245

Query: 252 GDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQS 311
           GD  + SD+FD V  RG +L S +NM PDSQ GFAPTVRGIA++ AQ+TI+QNG++IYQ+
Sbjct: 246 GDTWSSSDVFDSVSIRGAKLESDENMLPDSQSGFAPTVRGIAKSNAQVTIKQNGYVIYQT 305

Query: 312 YVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDF 371
           Y  PG FEI DL+PTSS GDL+VTI E D ++  YTIPY+ VPILQREG  K+  TAG +
Sbjct: 306 YTPPGPFEINDLNPTSSAGDLEVTIKESDNSETIYTIPYAAVPILQREGHIKYSATAGKY 365

Query: 372 RSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTH 431
           RS +  Q+SP  FQG  +GGLP E TAYGG Q S NY A  LGLG NLG +GA S D+T 
Sbjct: 366 RSNSYNQNSPNVFQGDLIGGLPWEITAYGGMQYSKNYRAIALGLGFNLGMFGATSFDLTQ 425

Query: 432 ARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD 491
           A S LAD S+H+G S RFLY+KS+   GT FQ++GYRYST+GFY+L D  Y++M G   D
Sbjct: 426 ANSTLADGSKHQGQSYRFLYSKSLVQTGTAFQIIGYRYSTEGFYSLSDTTYKQMSGTVID 485

Query: 492 YDGEHRDEPII--VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWY 549
            D  +  + +    +++NLR++++ + Q N+SQ L ++GS+Y++ + Q YWNT++ DT Y
Sbjct: 486 PDTLNEKDYVYNWNDFYNLRYNKRGKFQANISQPLGEYGSMYLAASQQTYWNTNNKDTLY 545

Query: 550 QVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYAS 609
           QVGY +S  GI  ++++++++S G  D +RI+ +NVS+P +           A +   A+
Sbjct: 546 QVGYNTSVHGIYLNIAYNYSKSPG-SDADRILSVNVSLPISNWLSLAVDGRTATNSMTAT 604

Query: 610 FNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGG 668
           +  +++++G  +  AGV G+L+E HNL+Y++ Q     NNG  GS   N++  YG+L  G
Sbjct: 605 YGYSQDNSGHVNQYAGVSGSLMEQHNLNYNIQQNFANQNNGENGSVGINYRGTYGSLNSG 664

Query: 669 YNYDRD-QHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           Y+YD +     N+ LSG +V HENG+TLSQPLG+TN+LIKAPGA  V +E  TG+ TDWR
Sbjct: 665 YSYDNNGNQQFNYGLSGALVIHENGLTLSQPLGETNILIKAPGANNVNVERGTGVKTDWR 724

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           GYAV+ YAT YR N I+LD  +M    +++     V+P++GALVRA F+  +G+R L  V
Sbjct: 725 GYAVVPYATEYRRNNISLDPMSMSMHTELDATTMEVIPSKGALVRAEFNAHVGIRGLFNV 784

Query: 788 TQGGKPVPFGSLV---RENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
               KPVPFG+ V    E +T IT +VGD GQVYLSG PL G + +QWG+ +  +C A+Y
Sbjct: 785 HYRNKPVPFGATVSVPTEGTTQITGIVGDSGQVYLSGLPLQGIINIQWGESSYQQCRANY 844

Query: 845 VLPKQSLQQAVTVISAVC 862
            LP+  L  A++  +  C
Sbjct: 845 QLPESELDNAISYANLEC 862



>gb|ABC16648.1| FocD [Escherichia coli]
          Length = 876

 Score =  771 bits (1990), Expect = 0.0
 Identities = 383/839 (45%), Positives = 552/839 (65%), Gaps = 20/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+ L+S L MGD  T  DIFDGV FRG+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVSLRSRLTMGDSYTRGDIFDGVNFRGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 341 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 401 YGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRHDGLSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 580

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 581 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 638

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLL  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 639 TLLGDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 697

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 698 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 757

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 758 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 817

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++  C
Sbjct: 818 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTVSC 875



>ref|NP_459028.1| fimbrial usher [Salmonella typhimurium LT2]
 gb|AAL18987.1| fimbrial usher [Salmonella typhimurium LT2]
          Length = 873

 Score =  768 bits (1984), Expect = 0.0
 Identities = 396/839 (47%), Positives = 558/839 (66%), Gaps = 21/839 (2%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQD 83
           ++A+ P+   +AE+YFNPAFL ++ ++VADLS F R N Q AG+YRVD++ N+ F+ ++D
Sbjct: 25  AIALAPA-PGWAENYFNPAFLSDDPSAVADLSTFSR-NAQAAGMYRVDVYLNNTFLATRD 82

Query: 84  IVFES---TTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDA 140
           I F++   T ++      GL  C    +L+ +G+N+ AFP LA+     C +L  A+P A
Sbjct: 83  IAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAA 142

Query: 141 TINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-------GNG 193
              FDFA  RL+I+IPQ A+++SA GYIPP+ WDEGI ALLLNY FTG         G+ 
Sbjct: 143 RTRFDFAQQRLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSA 202

Query: 194 NDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGD 253
            +SYF    SG+N+G WRLR+  +WN   G+      W +I T+++R ++ L+ EL  GD
Sbjct: 203 ENSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGD 262

Query: 254 GNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYV 313
             T S +FD + FRG++L S DNM PDS +GFAPT+ GIAR+ AQ+TIRQNG+II Q YV
Sbjct: 263 SYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYV 322

Query: 314 SPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRS 373
            PGAF I DL+PT+++GDL V + E DG+   Y +PYS VPILQREGR K+  T  ++RS
Sbjct: 323 PPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRS 382

Query: 374 GNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHAR 433
            +SQ+    F Q T + GLP  FT YGGTQLS++Y A  +G G NLG+WGAVSLDVT A 
Sbjct: 383 DSSQKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQAT 442

Query: 434 SQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-Y 492
           S LAD + ++G S+RFLYAKS+   GTN QLMGYRYST GFYTLDD  ++RM GY+ D  
Sbjct: 443 STLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSR 502

Query: 493 DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVG 552
               +  P   +Y+NL ++R+ ++QL+++Q L   GSL+I+G+ Q YW+T + D+  QVG
Sbjct: 503 TDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVG 562

Query: 553 YTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR--RYTRENALDRAYASF 610
           Y+ +  GI++S+S++ N+S G  + ++I  LN+SVP +   +     TR +     YA+F
Sbjct: 563 YSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHGDEVTRHH---NVYATF 619

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGGGY 669
           + + +     +  AG+ GTLL+ +NLSY++ QG  ++  G +G+A+  +  A G    GY
Sbjct: 620 STSTDKQHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGY 679

Query: 670 NY--DRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           N   + D   VN+ LSGG+V H +G+TLSQPLG+TN+LI APGA  V + +Q GI TD R
Sbjct: 680 NVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDAR 739

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           GYAV+ YAT YR NR+ALD N M + +D++  ++ VVPT+GALV A F  R+G RAL+T+
Sbjct: 740 GYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTL 799

Query: 788 TQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVL 846
              GKPVPFG+ V  N     ++V + G+VYLSG    G L V+WG+  + +C+A Y L
Sbjct: 800 NHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHL 858



>ref|YP_149372.1| fimbrial usher [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gb|AAV76060.1| fimbrial usher [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
          Length = 873

 Score =  765 bits (1976), Expect = 0.0
 Identities = 395/839 (47%), Positives = 556/839 (66%), Gaps = 21/839 (2%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQD 83
           ++A+ P+   +AE+YFNPAFL ++ ++VADLS F R N Q AG+YRVD++ N+ F+ ++D
Sbjct: 25  AIALAPA-PGWAENYFNPAFLSDDPSAVADLSTFSR-NAQAAGMYRVDVYLNNTFLATRD 82

Query: 84  IVFES---TTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDA 140
           I F++   T ++      GL  C    +L+ +G+N+ AFP LA+     C +L  A+P A
Sbjct: 83  IAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAA 142

Query: 141 TINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-------GNG 193
              FDFA  RL+I+IPQ A+++SA GYIPP+ WDEGI ALL NY FTG         G+ 
Sbjct: 143 RTRFDFAQQRLDISIPQAAMVASARGYIPPQYWDEGINALLFNYTFTGANSQDRSPGGSA 202

Query: 194 NDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGD 253
            +SYF    SG+N+G WRLR+  +WN   G+      W +I T ++R ++ L+ EL  GD
Sbjct: 203 ENSYFLGLNSGLNLGAWRLRDYSTWNANSGDQNSDSDWQHISTHLERDVVFLQGELTAGD 262

Query: 254 GNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYV 313
             T S +FD + FRG++L S DNM PDS +GFAPT+ GIAR+ AQ+TIRQNG+II Q YV
Sbjct: 263 SYTPSALFDSLPFRGLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYV 322

Query: 314 SPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRS 373
            PGAF I DL+PT+++GDL V + E DG+   Y +PYS VPILQREGR K+  T  ++RS
Sbjct: 323 PPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRS 382

Query: 374 GNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHAR 433
            +SQ+    F Q T + GLP  FT YGGTQLS++Y A  +G G NLG+WGAVSLDVT A 
Sbjct: 383 DSSQKEKVKFSQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQAT 442

Query: 434 SQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-Y 492
           S LAD + ++G S+RFLYAKS+   GTN QLMGYRYST GFYTLDD  ++RM GY+ D  
Sbjct: 443 STLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDNR 502

Query: 493 DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVG 552
               +  P   +Y+NL ++R+ ++QL+++Q L   GSL+I+G+ Q YW+T + D+  QVG
Sbjct: 503 TDSDKSRPEWADYYNLYYTRRGKVQLDINQQLGGLGSLFITGSQQSYWHTDEKDSLLQVG 562

Query: 553 YTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR--RYTRENALDRAYASF 610
           Y+ +  GI++S+S++ N+S G  + ++I  LN+SVP +   +     T  +     YA+F
Sbjct: 563 YSDTLAGIAWSVSYNNNKSAGDAERDQIFALNISVPLSQWLQHDDEVTHHH---NVYATF 619

Query: 611 NANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGGGY 669
           + + +     +  AG+ GTLL+ +NLSY++ QG  ++  G +G+A+  +  A G    GY
Sbjct: 620 STSTDKQHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGY 679

Query: 670 NY--DRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           N   + D   VN+ LSGG+V H +G+TLSQPLG+TN+LI APGA  V + +Q GI TD R
Sbjct: 680 NVSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDAR 739

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           GYAV+ YAT YR NR+ALD N M + +D++  ++ VVPT+GALV A F  R+GVRAL+T+
Sbjct: 740 GYAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGVRALVTL 799

Query: 788 TQGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVL 846
              GKPVPFG+ V  N     ++V + G+VYLSG    G L V+WG+  + +C+A Y L
Sbjct: 800 NHNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHL 858



>sp|P46009|FOCD_ECOLI Outer membrane usher protein focD precursor
 emb|CAA86605.1| focD [Escherichia coli]
          Length = 875

 Score =  756 bits (1951), Expect = 0.0
 Identities = 380/839 (45%), Positives = 546/839 (65%), Gaps = 21/839 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFN  FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNRRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQLYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDTYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+ L+S L MGD  T  DIFDGV FRG+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVSLRSRLTMGDSYTRGDIFDGVNFRGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 341 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 401 YGLPDGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRHDGQSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G++T  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIQLIGYRYSTRGYFTFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            +++++        +  +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKREGAG-EYQPADGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 579

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 580 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 637

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLL  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 638 TLLGDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 696

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 697 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 756

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 757 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 816

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++A C
Sbjct: 817 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTASC 874



>prf||1713397E S fimbrial adhesin
          Length = 867

 Score =  754 bits (1946), Expect = 0.0
 Identities = 376/827 (45%), Positives = 542/827 (65%), Gaps = 20/827 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQI + + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQIYMSNQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+PL+S L MGD  T    F    F+G+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVPLRSRLTMGDSYTRGGYFCRCKFQGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           GDL VT+ E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT  
Sbjct: 341 GDLQVTLQEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLK 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SR++G S RF
Sbjct: 401 YGLPAGWTVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRYDGQSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKRGRVQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 580

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ G
Sbjct: 581 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYG 638

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           TLLE +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 639 TLLEDNNLGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 697

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 698 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 757

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR GV+ L+T+ + GK VPFGS+V   
Sbjct: 758 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRAGVKVLMTLMRNGKAVPFGSVVTAR 817

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK++
Sbjct: 818 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKKA 863



>emb|CAB01714.1| outer membrane usher protein [Proteus mirabilis]
          Length = 843

 Score =  751 bits (1940), Expect = 0.0
 Identities = 371/843 (44%), Positives = 547/843 (64%), Gaps = 24/843 (2%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQD 83
           +L++  SF SY+ + FNPAFL ++  +V DLS FE GN    G Y +D+  N E++ S++
Sbjct: 20  ALSLTLSFSSYSANRFNPAFLADSPDAVTDLSYFEAGNRIKPGDYLLDIVFNHEYLRSEN 79

Query: 84  IVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATIN 143
           I F S   +       ++PC N+   + +G+N   F +  +   N+CI++ K +PD+ +N
Sbjct: 80  IHFISQDNH-------VIPCLNRDYYQSLGINIKLFADFEKFSANECIDIEKIIPDSVVN 132

Query: 144 FDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN---DSYFFS 200
           +D     LNI +PQ AL   A GYIPPE+WD GI A +LNY F+G    GN   +SY+ +
Sbjct: 133 YDIEKQALNIQVPQAALDLKARGYIPPEKWDNGITAGILNYTFSGANSWGNSHNNSYYLN 192

Query: 201 ELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDI 260
             SGINIG WRLR+  +WN   G      QWN+I T++QR I+ L+S+L +GD  T S +
Sbjct: 193 LRSGINIGAWRLRDYSTWNSSNGKN----QWNHINTYLQRNIVSLRSQLQIGDSYTSSTL 248

Query: 261 FDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI 320
           FD V FRG+ L S D M PDSQ+GFAP VRGIA+  A++ IRQNG++IYQ++VSPGAFEI
Sbjct: 249 FDSVNFRGISLESDDTMLPDSQRGFAPVVRGIAKGNAKVVIRQNGYVIYQTFVSPGAFEI 308

Query: 321 TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSS 380
            DL+PTS++GDL VTI+E DG++ +Y +PYS VPILQREG+ +F + AG+ R  N+Q   
Sbjct: 309 RDLYPTSNSGDLYVTIEENDGSKHSYVVPYSAVPILQREGQKQFVIQAGEIRQ-NNQHKK 367

Query: 381 PFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADAS 440
           P F QG  + GLP + T YGG   + +Y ++ LG G+N+G  GA S D+T A SQL + S
Sbjct: 368 PRFIQGHLIYGLPYDTTVYGGALATKDYQSYALGAGKNMGTLGAFSTDITFAHSQLPNNS 427

Query: 441 RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEP 500
             +G S+RFLYAKS+N FGTNFQL+GYRYST GFYTLD+    RM GY Y+   +++ +P
Sbjct: 428 TSDGYSLRFLYAKSLNQFGTNFQLLGYRYSTSGFYTLDETLNTRMSGYLYE---DNQKKP 484

Query: 501 IIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGI 560
           +  +Y NL   +K  LQ+N+SQ L D+GS+++    Q YW T++ +   Q GY  +  G+
Sbjct: 485 L--SYFNLHNRKKGSLQINLSQQLGDYGSIFMMTNWQNYWGTNEKNVLVQTGYNGNIKGL 542

Query: 561 SYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQN 620
           SY++ +S+N  +     ++ + + +S+P  +L    Y    +++  Y ++N + N+NG +
Sbjct: 543 SYNVIYSYNRMMNSGQRDQTLSVGLSIPLQLLMPTSY---QSINSTYLTYNYSHNNNGYS 599

Query: 621 SWLAGVGGTLLEGHNLSYHVSQGDTSNNG-YTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           +  AG+ GTLLE + L+Y V QG ++  G YTGSA   +Q+ YG L   YNY +D   +N
Sbjct: 600 THNAGIAGTLLEDNTLNYSVQQGYSNQGGNYTGSAALGYQSRYGNLNASYNYHQDAQQIN 659

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + L+GG++ H  G+TLSQPL    +L+ A     V I+N TG+ TDWRG+AV+ YAT YR
Sbjct: 660 YSLAGGMLLHSGGLTLSQPLSANAILVDARNTADVPIDNATGVYTDWRGFAVIPYATAYR 719

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NR+ALDT  + +++++E+NI  V+PTQGA+++  FD + G R L+T+   G+P+PFG++
Sbjct: 720 QNRVALDTTALPDNVEIEQNIKQVIPTQGAVIKVQFDAKKGYRLLLTLQHQGRPLPFGAI 779

Query: 800 VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVIS 859
             +    ++ +VGDDG +YLSG P SG+L ++WG  A+  C  +Y LP   L +    ++
Sbjct: 780 ATDKQNHLSGIVGDDGLLYLSGVPDSGKLEIRWGHNASQYCQVNYQLPASQLDEPFVKMT 839

Query: 860 AVC 862
             C
Sbjct: 840 QEC 842



>ref|ZP_00710525.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B171]
 ref|ZP_00728859.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E22]
          Length = 851

 Score =  749 bits (1935), Expect = 0.0
 Identities = 384/847 (45%), Positives = 554/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S DVT A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDVTQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 784 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|NP_415460.1| predicted outer membrane usher protein [Escherichia coli K12]
 ref|AP_001570.1| predicted outer membrane usher protein [Escherichia coli W3110]
 sp|P75857|YCBS_ECOLI Hypothetical outer membrane usher protein ycbS precursor
 gb|AAC74026.1| predicted outer membrane usher protein [Escherichia coli K12]
 dbj|BAA35695.1| predicted outer membrane usher protein [Escherichia coli W3110]
          Length = 866

 Score =  749 bits (1933), Expect = 0.0
 Identities = 382/847 (45%), Positives = 554/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 30  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 86

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 87  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 144

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 145 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 204

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 205 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 261

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 262 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 321

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 322 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 381

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 382 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 441

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 442 KGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 500

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 501 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 560

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 561 GISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 618

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 619 TTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 678

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 679 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 738

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 739 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 798

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y++G P  G + V+WG+  +  C  +Y L +Q +  A+
Sbjct: 799 GAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAI 858

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 859 TRMDAIC 865



>ref|ZP_00703276.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E24377A]
          Length = 851

 Score =  748 bits (1932), Expect = 0.0
 Identities = 383/847 (45%), Positives = 553/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVNTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 784 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|ZP_00716377.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B7A]
          Length = 851

 Score =  748 bits (1931), Expect = 0.0
 Identities = 383/847 (45%), Positives = 553/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 784 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|YP_688476.1| putative outer membrane protein [Shigella flexneri 5 str. 8401]
 gb|ABF03171.1| putative outer membrane protein [Shigella flexneri 5 str. 8401]
          Length = 866

 Score =  748 bits (1930), Expect = 0.0
 Identities = 383/847 (45%), Positives = 553/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 30  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 86

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 87  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKL 144

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 145 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 204

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 205 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 261

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 262 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 321

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 322 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 381

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 382 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 441

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 442 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 500

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 501 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 560

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 561 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 618

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 619 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 678

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 679 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 738

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 739 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 798

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 799 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 858

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 859 TRMDAIC 865



>ref|ZP_00924523.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           101-1]
          Length = 851

 Score =  747 bits (1929), Expect = 0.0
 Identities = 381/847 (44%), Positives = 553/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG N G++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNFGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNHLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GISWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 TTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y++G P  G + V+WG+  +  C  +Y L +Q +  A+
Sbjct: 784 GAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|ZP_00698300.1| COG3188: P pilus assembly protein, porin PapC [Shigella boydii
           BS512]
          Length = 851

 Score =  747 bits (1929), Expect = 0.0
 Identities = 383/847 (45%), Positives = 552/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L D+GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGDYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI AP A   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPSAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 784 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|NP_836648.1| putative outer membrane protein [Shigella flexneri 2a str. 2457T]
 ref|NP_706863.2| putative outer membrane protein [Shigella flexneri 2a str. 301]
 gb|AAP16454.1| putative outer membrane protein [Shigella flexneri 2a str. 2457T]
 gb|AAN42570.2| putative outer membrane protein [Shigella flexneri 2a str. 301]
          Length = 866

 Score =  747 bits (1928), Expect = 0.0
 Identities = 383/847 (45%), Positives = 553/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 30  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 86

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 87  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQVCVPLAEIIPDASVTFNVNKL 144

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 145 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 204

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 205 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 261

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 262 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 321

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 322 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 381

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 382 FAQTTLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 441

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 442 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 500

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 501 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 560

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 561 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 618

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 619 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 678

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 679 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 738

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 739 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 798

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 799 GAIATLDGIQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 858

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 859 TRMDAIC 865



>ref|ZP_00920626.1| COG3188: P pilus assembly protein, porin PapC [Shigella dysenteriae
           1012]
          Length = 851

 Score =  744 bits (1921), Expect = 0.0
 Identities = 382/847 (45%), Positives = 551/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TS +GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSLSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
             S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y+SG P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 784 GAIATLDGVQTNSGIIDDDGSLYMSGLPAQGAITVRWGEAPDQICHISYQLTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>gb|AAR28486.1| unknown [Escherichia coli]
          Length = 867

 Score =  743 bits (1919), Expect = 0.0
 Identities = 370/827 (44%), Positives = 538/827 (65%), Gaps = 20/827 (2%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL ++  +VADLS F +G   P GVYRVD++ ND +I ++D+ F+ + +   
Sbjct: 46  AELYFNPRFLSDDPDAVADLSAFTQGQELPPGVYRVDIYLNDTYISTRDVQFQMSQDGKQ 105

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNIT 154
                L PC +   +  +G+N  A P + +   + C +L   +  AT  FD    RL +T
Sbjct: 106 -----LAPCLSPEHMSAMGVNRYAVPGMERLPADTCTSLNSMIQGATFRFDVGQQRLYLT 160

Query: 155 IPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGP 209
           +PQ+ +++ A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG 
Sbjct: 161 VPQLYMINQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGS 220

Query: 210 WRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGV 269
           WRLR+N SW+Y  G GY    W +I TW++R I+PL+S L MGD  T    F    F+G+
Sbjct: 221 WRLRDNTSWSYSAGKGYSQNNWQHINTWLERDIVPLRSRLTMGDSYTRGGYFCRCKFQGI 280

Query: 270 RLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSN 329
           +L S DNM PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS V PG FEI D++P  S 
Sbjct: 281 QLASDDNMVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTVPPGPFEINDIYPAGSG 340

Query: 330 GDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTAL 389
           G+L VT+ E DG+ Q + +P+ +VP+LQREG  K+  +AG+FRSG  QQ +P F +GT  
Sbjct: 341 GELQVTLQEADGSVQRFNVPWFSVPVLQREGHLKYAFSAGEFRSGGHQQDNPRFAEGTLN 400

Query: 390 GGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRF 449
            GLP  +T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SRH+G S RF
Sbjct: 401 YGLPAGWTVYGGPWIAERYRAFNLGMGKNMGWLGAVSLDATRANARLPDESRHDGHSYRF 460

Query: 450 LYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNL 508
           LY KS+   GTN  L+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL
Sbjct: 461 LYNKSLTETGTNIHLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNL 520

Query: 509 RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSW 568
            ++++ R+Q++++Q   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S 
Sbjct: 521 AYNKRGRVQVSITQQKGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSL 580

Query: 569 NESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
           + +    + +RI+  +VS+PF+   +   T  +A   A A ++    + GQ +  AG+ G
Sbjct: 581 SRNAWQHETDRILSFDVSIPFSHWMRSDST--SAWRNASAPYSQTLEAYGQAASTAGLYG 638

Query: 629 TLLEGHNLSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           T L  +NL Y +  G T   GY     TG A+ N++  YG    GY++      + + LS
Sbjct: 639 TSLGDNNLGYTIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLS 697

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GG++ H NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+
Sbjct: 698 GGILAHANGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRV 757

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   
Sbjct: 758 ALDTNTLADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTAR 817

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQS 850
           + G +S+ G++GQVYLSG PLSG++ V+WG     +C A Y LPK++
Sbjct: 818 NGG-SSIAGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKKA 863



>ref|ZP_00725324.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           F11]
          Length = 853

 Score =  743 bits (1918), Expect = 0.0
 Identities = 390/850 (45%), Positives = 549/850 (64%), Gaps = 24/850 (2%)

Query: 25  LAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDI 84
           L I+P+  S A   FNPAFL  +  +VADLSRFE+G     G Y V++W ND  + S+ +
Sbjct: 15  LVIMPA-CSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLLSRTV 73

Query: 85  VFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELA-QQQNNKCINLLKAVPDATIN 143
            F++  EN       L+PC +   L  +G+N +A PE A     N C++L    PD    
Sbjct: 74  TFKADDENQ------LIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYM 127

Query: 144 FDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN---DSYFFS 200
            +  A RL +T PQ  +   A GYIPPE+WD GI A LLNY+F+GN   G+   ++Y+ +
Sbjct: 128 PELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLN 187

Query: 201 ELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDI 260
             +GINIG WR R+  +W+  RG+   + +  +I + +QR IIP +SEL +GD  + SD+
Sbjct: 188 LRAGINIGAWRFRDYSTWS--RGSN-SAGKLEHISSTLQRVIIPFRSELTLGDTWSSSDV 244

Query: 261 FDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI 320
           FD V  RG++L S +NM PDSQ GFAPTVRGIA++ AQ+TI+QNG++IYQ+Y+ PG FEI
Sbjct: 245 FDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEI 304

Query: 321 TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSS 380
           +DL+PTSS GDL+VTI E D ++  YT+PY+ VPILQREG  K+  T G +RS +  Q S
Sbjct: 305 SDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKS 364

Query: 381 PFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADAS 440
           P+ FQG  + GLP + TAYGG Q S +Y A  LGLG NLG +GA S DVT A S L D S
Sbjct: 365 PYVFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGATSFDVTQANSSLVDGS 424

Query: 441 RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEP 500
           +H+G S RFLY+KS+   GT F ++GYRYSTQGFYTL D  Y++M G   D      D+ 
Sbjct: 425 KHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQMSGIVVD-PKTLDDKD 483

Query: 501 IIVN---YHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSW 557
            + N   ++NLR+S++ + Q +VSQ   ++GS+Y+S + Q YWNT   D+ YQVGY +S 
Sbjct: 484 YVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSI 543

Query: 558 VGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSN 617
            GI  ++++++++S G  + ++IV LNVS+P +          ++ +   A++  +++++
Sbjct: 544 KGIYLNVAWNYSKSPG-TNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNH 602

Query: 618 GQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNYDRD-Q 675
           GQ +   GV G+LLE HNLSY++  G    +N  +GS   N++ AYG+L   Y+YD +  
Sbjct: 603 GQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGN 662

Query: 676 HDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYA 735
             +N+ +SG +V HENG+TLSQPLG+TNVLIKAPGA  V ++  TGI TDWRGYAV+ YA
Sbjct: 663 QQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGISTDWRGYAVVPYA 722

Query: 736 TVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVP 795
           T YR N I+LD  +M    +++   + V+P +GALVRA F   IG+R L TV    K VP
Sbjct: 723 TEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVP 782

Query: 796 FGSLVR---ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
           FG+      +NS+ IT +VGD+GQ+YLSG PL G + +QWGDG   +C A+Y LP+  L 
Sbjct: 783 FGATASAQIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELD 842

Query: 853 QAVTVISAVC 862
             V+  +  C
Sbjct: 843 NPVSYATLEC 852



>ref|NP_756076.1| Hypothetical outer membrane usher protein ycbS precursor
           [Escherichia coli CFT073]
 ref|YP_671396.1| hypothetical outer membrane usher protein [Escherichia coli 536]
 gb|AAN82650.1|AE016768_68 Hypothetical outer membrane usher protein ycbS precursor
           [Escherichia coli CFT073]
 gb|ABG71495.1| hypothetical outer membrane usher protein [Escherichia coli 536]
          Length = 864

 Score =  743 bits (1917), Expect = 0.0
 Identities = 390/850 (45%), Positives = 549/850 (64%), Gaps = 24/850 (2%)

Query: 25  LAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDI 84
           L I+P+  S A   FNPAFL  +  +VADLSRFE+G     G Y V++W ND  + S+ +
Sbjct: 26  LVIMPA-CSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLLSRTV 84

Query: 85  VFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELA-QQQNNKCINLLKAVPDATIN 143
            F++  EN       L+PC +   L  +G+N +A PE A     N C++L    PD    
Sbjct: 85  TFKADDENQ------LIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYM 138

Query: 144 FDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN---DSYFFS 200
            +  A RL +T PQ  +   A GYIPPE+WD GI A LLNY+F+GN   G+   ++Y+ +
Sbjct: 139 PELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLN 198

Query: 201 ELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDI 260
             +GINIG WR R+  +W+  RG+   + +  +I + +QR IIP +SEL +GD  + SD+
Sbjct: 199 LRAGINIGAWRFRDYSTWS--RGSN-SAGKLEHISSTLQRVIIPFRSELTLGDTWSSSDV 255

Query: 261 FDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI 320
           FD V  RG++L S +NM PDSQ GFAPTVRGIA++ AQ+TI+QNG++IYQ+Y+ PG FEI
Sbjct: 256 FDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEI 315

Query: 321 TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSS 380
           +DL+PTSS GDL+VTI E D ++  YT+PY+ VPILQREG  K+  T G +RS +  Q S
Sbjct: 316 SDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHLKYSTTVGQYRSNSYNQKS 375

Query: 381 PFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADAS 440
           P+ FQG  + GLP + TAYGG Q S +Y A  LGLG NLG +GA S DVT A S L D S
Sbjct: 376 PYVFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGATSFDVTQANSSLVDGS 435

Query: 441 RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEP 500
           +H+G S RFLY+KS+   GT F ++GYRYSTQGFYTL D  Y++M G   D      D+ 
Sbjct: 436 KHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQMSGTVVD-PKTLDDKD 494

Query: 501 IIVN---YHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSW 557
            + N   ++NLR+S++ + Q +VSQ   ++GS+Y+S + Q YWNT   D+ YQVGY +S 
Sbjct: 495 YVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSI 554

Query: 558 VGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSN 617
            GI  ++++++++S G  + ++IV LNVS+P +          ++ +   A++  +++++
Sbjct: 555 KGIYLNVAWNYSKSPG-TNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNH 613

Query: 618 GQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNYDRD-Q 675
           GQ +   GV G+LLE HNLSY++  G    +N  +GS   N++ AYG+L   Y+YD +  
Sbjct: 614 GQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGN 673

Query: 676 HDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYA 735
             +N+ +SG +V HENG+TLSQPLG+TNVLIKAPGA  V ++  TGI TDWRGYAV+ YA
Sbjct: 674 QQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGISTDWRGYAVVPYA 733

Query: 736 TVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVP 795
           T YR N I+LD  +M    +++   + V+P +GALVRA F   IG+R L TV    K VP
Sbjct: 734 TEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVP 793

Query: 796 FGSLVR---ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
           FG+      +NS+ IT +VGD+GQ+YLSG PL G + +QWGDG   +C A+Y LP+  L 
Sbjct: 794 FGATASAQIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELD 853

Query: 853 QAVTVISAVC 862
             V+  +  C
Sbjct: 854 NPVSYATLEC 863



>ref|NP_286815.1| PapC-like porin protein involved in fimbrial biogenesis
           [Escherichia coli O157:H7 EDL933]
          Length = 866

 Score =  742 bits (1915), Expect = 0.0
 Identities = 379/847 (44%), Positives = 551/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 30  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 86

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C  L + +PDA++ F+   +
Sbjct: 87  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACAPLAEIIPDASVTFNVNKL 144

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 145 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 204

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 205 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 261

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 262 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 321

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           ++ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 322 IYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 381

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S DVT A+S LAD S H
Sbjct: 382 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDVTQAKSTLADQSEH 441

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 442 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 500

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L+++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 501 SRYYNLFYTKRGKLQVNISQQLSEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 560

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YT +   + A+ + N + ++ G 
Sbjct: 561 GISWNYSKSRGQPDADQVFALNFSLPLNLLLSRSNDSYTSKK--NYAWMTSNTSIDNEGH 618

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++  +     GYNY  +  Q 
Sbjct: 619 TTQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGVFADARVGYNYSDNGSQQ 678

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 679 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 738

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G  + F
Sbjct: 739 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGISLRF 798

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y++G P  G + V+WG+  +  C   Y L +Q +  A+
Sbjct: 799 GAIATLDGVQTNSGIIDDDGSLYMAGLPAKGTITVRWGEAPDQICHISYELTEQQINSAI 858

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 859 TRMDAIC 865



>ref|ZP_00705200.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli HS]
          Length = 851

 Score =  742 bits (1915), Expect = 0.0
 Identities = 382/847 (45%), Positives = 551/847 (65%), Gaps = 25/847 (2%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFEPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C  L + +PDA++ F+   +
Sbjct: 72  VELTPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACALLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLISYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
             S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GGSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAV 855
           G++   +     S ++ DDG +Y++G P  G + V+WG+  +  C  +Y L +Q +  A+
Sbjct: 784 GAIATLDGVQANSGIIDDDGSLYMAGLPAKGTISVRWGEAPDQICHINYELTEQQINSAI 843

Query: 856 TVISAVC 862
           T + A+C
Sbjct: 844 TRMDAIC 850



>ref|ZP_00827368.1| COG3188: P pilus assembly protein, porin PapC [Yersinia mollaretii
           ATCC 43969]
          Length = 850

 Score =  741 bits (1914), Expect = 0.0
 Identities = 390/839 (46%), Positives = 539/839 (64%), Gaps = 20/839 (2%)

Query: 38  YFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFE----STTENT 93
           YF+PAFL ++ + VADLS FERG+    G+YRVD++ ND+ IG+ DI F+    +TT+ T
Sbjct: 17  YFDPAFLADDPSKVADLSHFERGDTSLPGIYRVDIFVNDKSIGTDDIDFQPRNAATTKTT 76

Query: 94  GDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNI 153
              S  L  C     + ++ +N +A P LA     +C+ L   +PDA  N +   +RL+I
Sbjct: 77  N--SASLSACIPVEKISQLNINLAAVPALANLDAGRCVQLENYIPDAISNLNLEKLRLDI 134

Query: 154 TIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN---DSYFFSELSGINIGPW 210
           +IPQ  L  SA G +P E WD GI A L+NYNF G+   G+   D+YF +  SGIN+  W
Sbjct: 135 SIPQAMLNKSARGEVPIESWDNGITAALINYNFVGSNSRGDFNQDNYFLNLDSGINLDAW 194

Query: 211 RLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVR 270
           RLRN  +WN    N      W NI ++ QR I+ LKS L +G  N+ SD+FD VG++G +
Sbjct: 195 RLRNFSTWNKSGKNA--KGNWQNINSYAQRNIVSLKSNLTIGQANSSSDVFDSVGYQGGQ 252

Query: 271 LYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNG 330
           L S D+M  DSQ+GFAP VRGIAR+ AQ+TIRQNG++IY+++V  GAF I DL PT S+G
Sbjct: 253 LNSDDSMLADSQRGFAPIVRGIARSNAQVTIRQNGYVIYETFVPSGAFVIDDLFPTGSSG 312

Query: 331 DLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALG 390
           +L V++ E DG+  +YT+PY+TVP LQREGR K+ LT G  RS   Q++ PF  QG+ L 
Sbjct: 313 NLQVSVTEADGSINSYTVPYATVPKLQREGRMKYSLTGGKIRSNRDQETPPFA-QGSLLW 371

Query: 391 GLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFL 450
           GLP   T Y GTQ S NYTAFLLG+G+N+G+WGAVSLD T A S L D S+H G S+R L
Sbjct: 372 GLPHNTTVYTGTQWSNNYTAFLLGVGKNMGDWGAVSLDATTANSTLVDDSKHSGQSVRLL 431

Query: 451 YAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDY---DGEHRDEPIIVNYHN 507
           Y KS+++ GTN QL GYRYSTQGFYTL D   R M G  +D    DG    +P +  Y+N
Sbjct: 432 YGKSLSSLGTNLQLAGYRYSTQGFYTLADTTNRMMVG-NHDVAMQDGVVSVKPSLAGYYN 490

Query: 508 LRFSRKDRLQLNVSQSLNDFGS---LYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSL 564
           L ++ +  LQL V+Q +   G+    ++S   + YWNT+ ++  +QVGY ++   I+YSL
Sbjct: 491 LYYTPRGNLQLTVNQRVEAAGTNGTAFLSANQKSYWNTNKTNELFQVGYNTNINNINYSL 550

Query: 565 SFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLA 624
           ++++N++  + + ++   L VS P N       T     +  YA++    +++G+    A
Sbjct: 551 AYNYNKNPWLSNADQAFSLGVSFPLNRWLSSGGTPRRNTNNMYANYRNTMDNHGKMQQSA 610

Query: 625 GVGGTLLEGHNLSYHVSQGDTSNNGYTGS-ATANWQAAYGTLGGGYNYDRDQHDVNWQLS 683
           GV G+LL+ +NLSY + Q   +  G T S A+ N++  YGT   GYNY      +N+ L 
Sbjct: 611 GVSGSLLDKNNLSYSLQQSYANRGGDTSSNASMNYRGTYGTANAGYNYSGGDTRINYGLR 670

Query: 684 GGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRI 743
           GGVV H  G+TLSQPL D NVLIKA GA GV + N TG+ TD  GYAV+  A+ YR NR+
Sbjct: 671 GGVVVHSEGVTLSQPLSDANVLIKAQGAKGVSVANGTGVKTDLWGYAVLPSASAYRNNRV 730

Query: 744 ALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVREN 803
           ALDTNT+ N+I+++    +VVPT+GALV+A+F+ RIGVR+L+++T  GK VPFG+LV + 
Sbjct: 731 ALDTNTLANNIELDNAALNVVPTRGALVKADFNARIGVRSLMSLTYQGKAVPFGALVTQP 790

Query: 804 STGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
                S+V DDG VYLSG PLSG+L V+W DG   +C A Y LP+ S    ++  +A C
Sbjct: 791 GVDNPSIVSDDGVVYLSGLPLSGQLQVRWADGPQGQCSAQYQLPENSEHNEISYATAEC 849



>ref|YP_542894.1| outer membrane usher protein precursor AufC [Escherichia coli
           UTI89]
 ref|YP_859022.1| outer membrane usher protein precursor AufC [Escherichia coli APEC
           O1]
 gb|ABE09363.1| outer membrane usher protein precursor AufC [Escherichia coli
           UTI89]
 gb|ABJ02898.1| outer membrane usher protein precursor AufC [Escherichia coli APEC
           O1]
          Length = 864

 Score =  741 bits (1912), Expect = 0.0
 Identities = 389/850 (45%), Positives = 549/850 (64%), Gaps = 24/850 (2%)

Query: 25  LAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDI 84
           L I+P+  S A   FNPAFL  +  +VADLSRFE+G     G Y V++W ND  + S+ +
Sbjct: 26  LVIMPA-CSIAGMRFNPAFLSGDTEAVADLSRFEKGMTYLPGSYEVEVWVNDSPLLSRTV 84

Query: 85  VFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELA-QQQNNKCINLLKAVPDATIN 143
            F++      D +  L+PC +   L  +G+N +A PE A     N C++L    PD    
Sbjct: 85  TFKA------DDANQLIPCLSLADLLSLGINKNALPEQALASSENSCLDLRIWFPDVHYM 138

Query: 144 FDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN---DSYFFS 200
            +  A RL +T PQ  +   A GYIPPE+WD GI A LLNY+F+GN   G+   ++Y+ +
Sbjct: 139 PELDAQRLKLTFPQAIIKRDARGYIPPEQWDNGITAFLLNYDFSGNNDRGDYSSNNYYLN 198

Query: 201 ELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDI 260
             +GINIG WR R+  +W+  RG+   + +  +I + +QR IIP +SEL +GD  + SD+
Sbjct: 199 LRAGINIGAWRFRDYSTWS--RGSN-SAGKLEHISSTLQRVIIPFRSELTLGDTWSSSDV 255

Query: 261 FDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI 320
           FD V  RG++L S +NM PDSQ GFAPTVRGIA++ AQ+TI+QNG++IYQ+Y+ PG FEI
Sbjct: 256 FDSVSIRGIKLESDENMLPDSQSGFAPTVRGIAKSRAQVTIKQNGYVIYQTYMPPGPFEI 315

Query: 321 TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSS 380
           +DL+PTSS GDL+VTI E D ++  YT+PY+ VPILQREG  K+  T G +RS +  Q S
Sbjct: 316 SDLNPTSSAGDLEVTIKESDNSETVYTVPYAAVPILQREGHSKYSTTVGQYRSNSYNQKS 375

Query: 381 PFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADAS 440
           P+ FQG  + GLP + TAYGG Q S +Y A  LGLG NLG +GA S DVT A S L D S
Sbjct: 376 PYIFQGELIWGLPWDITAYGGAQFSEDYRALALGLGLNLGVFGATSFDVTQANSSLVDGS 435

Query: 441 RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEP 500
           +H+G S RFLY+KS+   GT F ++GYRYSTQGFYTL D  Y++M G   D      D+ 
Sbjct: 436 KHQGQSYRFLYSKSLVQTGTAFHIIGYRYSTQGFYTLSDTTYQQMSGTVVD-PKTLDDKD 494

Query: 501 IIVN---YHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSW 557
            + N   ++NLR+S++ + Q +VSQ   ++GS+Y+S + Q YWNT   D+ YQVGY +S 
Sbjct: 495 YVYNWNDFYNLRYSKRGKFQASVSQPFGNYGSMYLSASQQTYWNTDKKDSLYQVGYNTSI 554

Query: 558 VGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSN 617
            GI  ++++++++S G  + ++IV LNVS+P +          ++ +   A++  +++++
Sbjct: 555 KGIYLNVAWNYSKSPG-TNADKIVSLNVSLPISNWLSSTNDGRSSSNAMTATYGYSQDNH 613

Query: 618 GQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNYDRD-Q 675
           GQ +   GV G+LLE HNLSY++  G    +N  +GS   N++ AYG+L   Y+YD +  
Sbjct: 614 GQVNQYTGVSGSLLEQHNLSYNIQHGFANQDNSSSGSVGVNYRGAYGSLNSAYSYDNEGN 673

Query: 676 HDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYA 735
             +N+ +SG +V HENG+TLSQPLG+TNVLIKAPGA  V ++  TGI TDWRGYAV+ YA
Sbjct: 674 QQINYGISGALVVHENGLTLSQPLGETNVLIKAPGANNVDVQRGTGISTDWRGYAVVPYA 733

Query: 736 TVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVP 795
           T YR N I+LD  +M    +++   + V+P +GALVRA F   IG+R L TV    K VP
Sbjct: 734 TEYRRNNISLDPMSMNMHTELDITSTEVIPGKGALVRAEFAAHIGIRGLFTVRYRNKSVP 793

Query: 796 FGSLVR---ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
           FG+      +NS+ IT +VGD+GQ+YLSG PL G + +QWGDG   +C A+Y LP+  L 
Sbjct: 794 FGATASAQIKNSSQITGIVGDNGQLYLSGLPLEGVINIQWGDGVQQKCQANYKLPETELD 853

Query: 853 QAVTVISAVC 862
             V+  +  C
Sbjct: 854 NPVSYATLEC 863



>gb|AAD34372.1|AF130422_3 fimbrial usher [Salmonella typhimurium]
 gb|AAD22098.1| bovine colonization factor BcfC [Salmonella typhimurium]
          Length = 870

 Score =  716 bits (1847), Expect = 0.0
 Identities = 380/838 (45%), Positives = 539/838 (64%), Gaps = 22/838 (2%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQD 83
           ++A+ P+   +AE+YFNPAFL ++ ++VADLS F R N Q AG+YRVD++ N+ F+ ++D
Sbjct: 25  AIALAPA-PGWAENYFNPAFLSDDPSAVADLSTFSR-NAQAAGMYRVDVYLNNTFLATRD 82

Query: 84  IVFES---TTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDA 140
           I F++   T ++      GL  C    +L+ +G+N+ AFP LA+     C +L  A+P A
Sbjct: 83  IAFQAVKTTGKSAPTDDSGLRACLTPEMLKNMGVNTGAFPLLAKAAAGSCPDLASAIPAA 142

Query: 141 TINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR-------GNG 193
              FDFA  RL+I+IPQ A+++SA GYIPP+ WDEGI ALLLNY FTG         G+ 
Sbjct: 143 RTRFDFAQQRLDISIPQAAMVASARGYIPPKYWDEGINALLLNYTFTGANSQDRSPGGSA 202

Query: 194 NDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGD 253
            +SYF    +G+N+G WRL +  +WN   G+      W +I T+++R ++ L+ EL  GD
Sbjct: 203 ENSYFLGLNNGLNLGAWRLPDYSTWNANSGDQNSDSDWQHISTYLERDVVFLQGELTAGD 262

Query: 254 GNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYV 313
                  +  + FR ++L S DNM PDS +GFAPT+ GIAR+ AQ+TIRQNG+II Q YV
Sbjct: 263 -IIPPPHYRQLPFRRLQLASDDNMLPDSMKGFAPTIHGIARSNAQVTIRQNGYIINQRYV 321

Query: 314 SPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRS 373
            PGAF I DL+PT+++GDL V + E DG+   Y +PYS VPILQREGR K+  T  ++RS
Sbjct: 322 PPGAFTINDLYPTAASGDLTVEVKESDGSINRYNVPYSAVPILQREGRLKYAATVAEYRS 381

Query: 374 GNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHAR 433
            +SQ+    F Q T + GLP  FT YGGTQLS++Y A  +G G NLG+WGAVSLDVT A 
Sbjct: 382 DSSQKEKVKFGQATLIWGLPHGFTLYGGTQLSSHYHALAIGSGANLGDWGAVSLDVTQAT 441

Query: 434 SQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-Y 492
           S LAD + ++G S+RFLYAKS+   GTN QLMGYRYST GFYTLDD  ++RM GY+ D  
Sbjct: 442 STLADNNTYQGQSLRFLYAKSLAQSGTNLQLMGYRYSTSGFYTLDDTTWKRMSGYDDDSR 501

Query: 493 DGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVG 552
               +  P   +Y+NL ++R+ +   ++  +    G  +I+G+ Q YW+T + D+  QVG
Sbjct: 502 TDSDKSRPEWADYYNLYYTRRGKYN-SIQSTARRVGIAFITGSQQSYWHTDEKDSLLQVG 560

Query: 553 YTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTK-RRYTRENALDRAYASFN 611
           Y+ +  GI++S+S++ N+S G  + ++I  L        L      TR +     YA+F+
Sbjct: 561 YSDTLAGIAWSVSYNNNKSAGDAERDQIFALIFGAVSQWLQHGDEVTRHH---NVYATFS 617

Query: 612 ANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGGGYN 670
            + +     +  AG+ GTLL+ +NLSY++ QG  ++  G +G+A+  +  A G    GYN
Sbjct: 618 TSTDKQHNVTQNAGLSGTLLDENNLSYNIQQGYQNHGIGESGAASLEYDGAKGNANIGYN 677

Query: 671 Y--DRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRG 728
              + D   VN+ LSGG+V H +G+TLSQPLG+TN+LI APGA  V + +Q GI TD RG
Sbjct: 678 VSDNGDYQQVNYGLSGGLVAHAHGVTLSQPLGNTNILIAAPGAANVGVVDQPGIHTDARG 737

Query: 729 YAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVT 788
           YAV+ YAT YR NR+ALD N M + +D++  ++ VVPT+GALV A F  R+G RAL+T+ 
Sbjct: 738 YAVVPYATTYRQNRMALDVNAMADDVDIDDAVTRVVPTEGALVLARFKARVGARALVTLN 797

Query: 789 QGGKPVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVL 846
             GKPVPFG+ V  N     ++V + G+VYLSG    G L V+WG+  + +C+A Y L
Sbjct: 798 HNGKPVPFGATVTVNDRHAEAIVDEAGEVYLSGLSAQGVLHVRWGNLPDQQCVASYHL 855



>ref|ZP_00713225.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 806

 Score =  713 bits (1841), Expect = 0.0
 Identities = 368/803 (45%), Positives = 528/803 (65%), Gaps = 25/803 (3%)

Query: 30  SFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFEST 89
           +F + AE++F+PAF  ++ + VADLSRFE+G     GVYRVD+  N   + ++++ F   
Sbjct: 15  AFNAQAETWFDPAFFKDDPSMVADLSRFEKGQKITPGVYRVDIVLNQTIVDTRNVNF--- 71

Query: 90  TENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAM 149
            E T +K  G+  C     L+ +G+N+ AFP   Q     C+ L + +PDA++ F+   +
Sbjct: 72  VEITPEK--GIAACLTTESLDAMGVNTDAFPAFKQLDKQACVPLAEIIPDASVTFNVNKL 129

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRG-------NGNDSYFFSEL 202
           RL I++PQIA+ S+A GY+PPE WDEGI ALLL Y+F+G          +  DSYF +  
Sbjct: 130 RLEISVPQIAIKSNARGYVPPERWDEGINALLLGYSFSGANSIHSSADSDSGDSYFLNLN 189

Query: 203 SGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFD 262
           SG+N+GPWRLRNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD
Sbjct: 190 SGVNLGPWRLRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFD 246

Query: 263 GVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITD 322
            V FRGV+L S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D
Sbjct: 247 SVSFRGVQLASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISD 306

Query: 323 LHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           L+ TSS+GDL V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    
Sbjct: 307 LYSTSSSGDLLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESK 366

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F Q T   G P   T YGG Q +  Y A + GLG NLG++GA+S D T A+S LAD S H
Sbjct: 367 FAQATLQWGGPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDATQAKSTLADQSEH 426

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPII 502
           +G S RFLYAK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+ 
Sbjct: 427 KGQSYRFLYAKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMW 485

Query: 503 VNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISY 562
             Y+NL ++++ +LQ+N+SQ L ++GS Y+SG+ Q YW+T   D   Q GY +    +S 
Sbjct: 486 SRYYNLFYTKRGKLQVNISQQLGEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSL 545

Query: 563 SLSFSWNESVGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQ 619
            +S+++++S G PD +++  LN S+P N+L  R    YTR+   + A+ + N + ++ G 
Sbjct: 546 GVSWNYSKSRGQPDADQVFALNFSLPLNLLLPRSNDSYTRKK--NYAWMTSNTSIDNEGH 603

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQH 676
            +   G+  TLL+  NLSY V QG ++      GSA+ +++ A+     GYNY  +  Q 
Sbjct: 604 ITQNLGLTETLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGAFADARVGYNYSDNGSQQ 663

Query: 677 DVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYAT 736
            +N+ LSG +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT
Sbjct: 664 QLNYALSGSLVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYAT 723

Query: 737 VYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPF 796
            YR NRIALD  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G P+ F
Sbjct: 724 SYRENRIALDAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGIPLRF 783

Query: 797 GSLVRENSTGITS-MVGDDGQVY 818
           G++   +     S ++ DDG +Y
Sbjct: 784 GAIATLDGIQTNSGIIDDDGSLY 806



>ref|NP_287650.1| putative fimbrial usher protein [Escherichia coli O157:H7 EDL933]
 gb|AAG56262.1|AE005354_7 putative fimbrial usher protein [Escherichia coli O157:H7 EDL933]
          Length = 883

 Score =  701 bits (1809), Expect = 0.0
 Identities = 361/850 (42%), Positives = 534/850 (62%), Gaps = 29/850 (3%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL  +     DLS F +G   P G YRVD++ NDEF+ S+DI F      T 
Sbjct: 40  AEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLNDEFMTSRDITFI-----TD 94

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ-------NNKCINLLKAVPDATINFDFA 147
           D +  L+PC +  LL  +G+  SA  +  +         N+ C  L   + DA+  FD  
Sbjct: 95  DNNADLIPCLSTDLLVSLGIKKSALLDNKEHSAEKHVPDNSACTPLQDRLVDASTEFDVG 154

Query: 148 AMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN-------GNDSYFFS 200
              L++++PQI +   A GY+ P+ W+EGI A LLNY+F GN  N       G  +Y + 
Sbjct: 155 QQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYL 214

Query: 201 EL-SGINIGPWRLRNNGSWNYFRG--NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTG 257
            L SGINIG WRLR+N +W+Y  G  N   S +W +I T  +R IIPL+S L +GD  T 
Sbjct: 215 NLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTD 274

Query: 258 SDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGA 317
            DIFD V FRG+++ S++ M PDSQ GFAP + GIAR  AQ++++QNG+ +YQ+ V PG 
Sbjct: 275 GDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGP 334

Query: 318 FEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQ 377
           F I D++  ++ GDL VTI E DG+ Q   +PYS+VP+LQR G  ++ L  G++RSGN+ 
Sbjct: 335 FTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNL 394

Query: 378 QSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLA 437
           QSSP F QG+ + GL   +T YGG Q++ +Y AF LG+G++LG +GA S D+T A + LA
Sbjct: 395 QSSPRFIQGSLMHGLEGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLA 454

Query: 438 DASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY-DYDGEH 496
           D +RH G S++ +Y+KS    GTN Q+ GYRYSTQGFY L D AY RM GY      G+ 
Sbjct: 455 DGTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDS 514

Query: 497 RDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSS 556
            ++   ++Y NL +S++ + Q+++SQ L ++G+ + S + Q YWNTS SD     G    
Sbjct: 515 NEQTQFIDYFNLFYSKRGQEQISISQQLGNYGATFFSASRQSYWNTSRSDQQISFGLNVP 574

Query: 557 WVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNS 616
           +  I+ SL++S++ ++   D + ++   ++VPF+     R   ++A   + AS++ + + 
Sbjct: 575 FGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFS--HWMRTDSQSAFRNSNASYSMSNDL 632

Query: 617 NGQNSWLAGVGGTLLEGHNLSYHVSQGDT----SNNGYTGSATANWQAAYGTLGGGYNYD 672
            G  + L+GV GTLL  +NL+Y V  G+T    +++G +G +T N++ AYG    GY+  
Sbjct: 633 KGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSTLNYRGAYGNTNVGYSRS 692

Query: 673 RDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVM 732
            D   + + +SGG++ H +GIT  QPLGDT VL+KAPGA  V+IENQTGI TDWRGYA++
Sbjct: 693 GDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAIL 752

Query: 733 LYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGK 792
            +AT YR NR+AL+ N++ +++++++ + +V+PT GA+ RA F+ +IG + L+T+  G K
Sbjct: 753 PFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNK 812

Query: 793 PVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
            VPFG++V        S+V ++GQVYL+G P SG+L V WG+  NS CI  Y LP+ S  
Sbjct: 813 SVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVDYKLPEVSPG 872

Query: 853 QAVTVISAVC 862
             +   +A+C
Sbjct: 873 TLLNQQTAIC 882



>ref|NP_753830.1| Outer membrane usher protein fimD precursor [Escherichia coli
           CFT073]
 gb|AAN80392.1|AE016760_251 Outer membrane usher protein fimD precursor [Escherichia coli
           CFT073]
          Length = 883

 Score =  695 bits (1794), Expect = 0.0
 Identities = 357/850 (42%), Positives = 533/850 (62%), Gaps = 29/850 (3%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL  +     DLS F +G   P G YRVD++ NDEF+ S+DI F +      
Sbjct: 40  AEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLNDEFMASRDITFIAD----- 94

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ-------NNKCINLLKAVPDATINFDFA 147
           D +  L+PC +  LL  +G+  SA  +  +         N+ C  L   + DA+  FD  
Sbjct: 95  DNNADLIPCLSTDLLVSLGIKKSALLDNKEHSADKHVPDNSACTPLQDRLADASSEFDVG 154

Query: 148 AMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN-------GNDSYFFS 200
              L++++PQI +   A GY+ P+ W+EGI A LLNY+F GN  N       G  +Y + 
Sbjct: 155 QQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYL 214

Query: 201 EL-SGINIGPWRLRNNGSWNYFRG--NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTG 257
            L SGINIG WRLR+N +W+Y  G  N   S +W +I T  +R IIPL+S L +GD  T 
Sbjct: 215 NLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTD 274

Query: 258 SDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGA 317
            DIFD V FRG+++ S++ M PDSQ GFAP + GIAR  AQ++++QNG+ +YQ+ V PG 
Sbjct: 275 GDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGP 334

Query: 318 FEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQ 377
           F I D++  ++ GDL VTI E DG+ Q   +PYS+VP+LQR G  ++ L  G++RSGN+ 
Sbjct: 335 FTIDDINSAANGGDLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNL 394

Query: 378 QSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLA 437
           QS+P F Q + + GL   +T YGG Q++ +Y AF LG+G++LG +GA S D+T A + LA
Sbjct: 395 QSTPKFVQASLMHGLKGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLA 454

Query: 438 DASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY-DYDGEH 496
           D +RH G S++ +Y+KS    GTN Q+ GYRYSTQGFY L D AY RM GY      G+ 
Sbjct: 455 DDTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDT 514

Query: 497 RDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSS 556
            ++ + ++Y NL +S++ + Q+++SQ L ++G+ + S + Q YWNTS SD     G    
Sbjct: 515 SEQTLFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVP 574

Query: 557 WVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNS 616
           +  I+ SL++S++ ++   D + ++   ++VPF+     R   ++A   + AS++ + + 
Sbjct: 575 FGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFS--HWMRTDSQSAFHNSNASYSMSNDL 632

Query: 617 NGQNSWLAGVGGTLLEGHNLSYHVSQGDT----SNNGYTGSATANWQAAYGTLGGGYNYD 672
            G  + L+GV GTLL  +NL+Y V  G+T    +++G +G ++ N++ AYG    GY+  
Sbjct: 633 KGGMTNLSGVYGTLLPDNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRS 692

Query: 673 RDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVM 732
            D   + + +SGG++ H +GIT  QPLGDT VL+KAPGA  V+IENQTGI TDWRGYA++
Sbjct: 693 GDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAIL 752

Query: 733 LYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGK 792
            +AT YR NR+AL+ N++ +++++++ + +V+PT GA+ RA F+ +IG + L+T+  G K
Sbjct: 753 PFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNVQIGGKVLMTLKYGNK 812

Query: 793 PVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
            VPFG++V        S+V ++GQVYL+G P SG+L V WG   NS CI  Y LP+ S  
Sbjct: 813 SVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPG 872

Query: 853 QAVTVISAVC 862
             +   +A+C
Sbjct: 873 TLLNQQTAIC 882



>ref|YP_852646.1| outer membrane usher protein FimD precursor [Escherichia coli APEC
           O1]
 gb|ABJ00932.1| outer membrane usher protein FimD precursor [Escherichia coli APEC
           O1]
          Length = 883

 Score =  692 bits (1785), Expect = 0.0
 Identities = 356/850 (41%), Positives = 532/850 (62%), Gaps = 29/850 (3%)

Query: 35  AESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENTG 94
           AE YFNP FL  +     DLS F +G   P G YRVD++ NDEF+ S+DI F +      
Sbjct: 40  AEYYFNPRFLSNDLAESVDLSAFTKGREAPPGTYRVDIYLNDEFMASRDITFIAD----- 94

Query: 95  DKSGGLMPCFNQVLLERIGLNSSAFPELAQQQ-------NNKCINLLKAVPDATINFDFA 147
           D +  L+PC +  LL  +G+  SA  +  +         N+ C  L   + DA+  FD  
Sbjct: 95  DNNADLIPCLSTDLLVSLGIKKSALLDNKEHSADKHVPDNSACTPLQDRLADASSEFDVG 154

Query: 148 AMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN-------GNDSYFFS 200
              L++++PQI +   A GY+ P+ W+EGI A LLNY+F GN  N       G  +Y + 
Sbjct: 155 QQHLSLSVPQIYVGRMARGYVSPDLWEEGINAGLLNYSFDGNSINNRSNHNAGKSNYAYL 214

Query: 201 EL-SGINIGPWRLRNNGSWNYFRG--NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTG 257
            L SGINIG WRLR+N +W+Y  G  N   S +W +I T  +R IIPL+S L +GD  T 
Sbjct: 215 NLQSGINIGSWRLRDNSTWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTD 274

Query: 258 SDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGA 317
            DIFD V FRG+++ S++ M PDSQ GFAP + GIAR  AQ++++QNG+ +YQ+ V PG 
Sbjct: 275 GDIFDSVNFRGLKINSTEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGP 334

Query: 318 FEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQ 377
           F I D++  ++ G+L VTI E DG+ Q   +PYS+VP+LQR G  ++ L  G++RSGN+ 
Sbjct: 335 FTIDDINSAANGGNLQVTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNL 394

Query: 378 QSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLA 437
           QS+P F Q + + GL   +T YGG Q++ +Y AF LG+G++LG +GA S D+T A + LA
Sbjct: 395 QSTPKFVQASLMHGLKGNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLA 454

Query: 438 DASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY-DYDGEH 496
           D +RH G S++ +Y+KS    GTN Q+ GYRYSTQGFY L D AY RM GY      G+ 
Sbjct: 455 DDTRHSGQSVKSVYSKSFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDT 514

Query: 497 RDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSS 556
            ++ + ++Y NL +S++ + Q+++SQ L ++G+ + S + Q YWNTS SD     G    
Sbjct: 515 SEQTLFIDYFNLFYSKRGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVP 574

Query: 557 WVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNS 616
           +  I+ SL++S++ ++   D + ++   ++VPF+     R   ++A   + AS++ + + 
Sbjct: 575 FGDITTSLNYSYSNNIWQNDRDHLLAFTLNVPFS--HWMRTDSQSAFHNSNASYSMSNDL 632

Query: 617 NGQNSWLAGVGGTLLEGHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYD 672
            G  + L+GV GTLL  +NL+Y V    +QG  +++G +G ++ N++ AYG    GY+  
Sbjct: 633 KGGMTNLSGVYGTLLPDNNLNYSVQVGNTQGGNTSSGTSGYSSLNYRGAYGNTNVGYSRS 692

Query: 673 RDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVM 732
            D   + + +SGG++ H +GIT  QPLGDT VL+KAPGA  V+IENQTGI TDWRGYA++
Sbjct: 693 GDSSQIYYGMSGGIIAHADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAIL 752

Query: 733 LYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGK 792
            +AT YR NR+AL+ N++ +++++++ + +V+PT GA+ RA F+ +IG + L+T+  G K
Sbjct: 753 PFATEYRENRVALNANSLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNK 812

Query: 793 PVPFGSLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQ 852
            VPFG++V        S+V ++GQVYL+G P SG+L V WG   NS CI  Y LP  S  
Sbjct: 813 SVPFGAIVTHGENKNGSIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVDYKLPVVSPG 872

Query: 853 QAVTVISAVC 862
             +   +A+C
Sbjct: 873 TLLNQQTAIC 882



>ref|ZP_00725712.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           F11]
          Length = 711

 Score =  692 bits (1785), Expect = 0.0
 Identities = 339/712 (47%), Positives = 483/712 (67%), Gaps = 15/712 (2%)

Query: 162 SSAHGYIPPEEWDEGIPALLLNYNFTGNR-----GNGNDSYFFSELSGINIGPWRLRNNG 216
           + A GYI PE WD GI A LLNY+F+GNR     G  +D  + +  +G+NIG WRLR+N 
Sbjct: 3   NQARGYIAPEYWDNGITAALLNYDFSGNRVRDSYGGTSDYAYLNLKTGLNIGSWRLRDNT 62

Query: 217 SWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDN 276
           SW+Y  G GY    W +I TW++R I+PL+S L MGD  T  DIFDGV FRG++L S DN
Sbjct: 63  SWSYSAGKGYSQNNWQHINTWLERDIVPLRSRLTMGDSYTRGDIFDGVNFRGIQLASDDN 122

Query: 277 MYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTI 336
           M PDSQ+G+APT+ GI+R  ++++IRQNG+ IYQS + PG FEI D++P  S GDL VT+
Sbjct: 123 MVPDSQRGYAPTIHGISRGTSRISIRQNGYEIYQSTLPPGPFEINDIYPAGSGGDLQVTL 182

Query: 337 DERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEF 396
            E DG+ Q + +P+S+VP+LQREG  K+ L+AG+FRSG  QQ +P F +GT   GLP  +
Sbjct: 183 QEADGSVQRFNVPWSSVPVLQREGHLKYALSAGEFRSGGHQQDNPRFAEGTLKYGLPAGW 242

Query: 397 TAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMN 456
           T YGG  ++  Y AF LG+G+N+G  GAVSLD T A ++L D SR++G S RFLY KS+ 
Sbjct: 243 TVYGGAWIAERYRAFNLGVGKNMGWLGAVSLDATRANARLPDESRYDGQSYRFLYNKSLT 302

Query: 457 TFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYE-YDYDGEHRDEPIIVNYHNLRFSRKDR 515
             GTN QL+GYRYST+G+++  D A+++M GY     DG  + +P   +Y+NL ++++ R
Sbjct: 303 ETGTNIQLIGYRYSTRGYFSFADTAWKKMSGYSVLTQDGVIQIQPKYTDYYNLAYNKRGR 362

Query: 516 LQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIP 575
           +Q+++SQ   +  +LY+SG+HQ YW T  +D     G+ SS   IS+SL++S + +    
Sbjct: 363 VQVSISQQTGESSTLYLSGSHQSYWGTDRTDRQLNAGFNSSVNDISWSLNYSLSRNAWQH 422

Query: 576 DNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHN 635
           + +RI+  +VS+PF+   +   T  +A   A A ++    ++GQ +  AG+ GTLLE +N
Sbjct: 423 ETDRILSFDVSIPFSHWMRSDST--SAWRNASARYSQTLEAHGQAASTAGLYGTLLEDNN 480

Query: 636 LSYHVSQGDTSNNGY-----TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHE 690
           L Y +  G T   GY     TG A+ N++  YG    GY++      + + LSGG++ H 
Sbjct: 481 LGYSIQSGYT-RGGYEGSSKTGYASLNYRGGYGNASAGYSHSGGYRQLYYGLSGGILAHA 539

Query: 691 NGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTM 750
           NG+TLSQPLGDT +L++APGA   RIENQTG+ TDWRGYAV+ YAT YR NR+ALDTNT+
Sbjct: 540 NGLTLSQPLGDTLILVRAPGASDTRIENQTGVSTDWRGYAVLPYATDYRENRVALDTNTL 599

Query: 751 GNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTGITSM 810
            +++D+E  + SVVPT GA+VRA++ TR+GV+ L+T+ + GK VPFGS+V   + G +S+
Sbjct: 600 ADNVDIENTVVSVVPTHGAVVRADYKTRVGVKVLMTLMRNGKAVPFGSVVTARNGG-SSI 658

Query: 811 VGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
            G++GQVYLSG PLSG++ V+WG     +C A Y LPK+S  Q ++ ++  C
Sbjct: 659 AGENGQVYLSGMPLSGQVSVKWGSQTTDQCTADYKLPKESAGQILSHVTVSC 710



>emb|CAA35968.1| fimD [Escherichia coli]
          Length = 876

 Score =  676 bits (1743), Expect = 0.0
 Identities = 361/844 (42%), Positives = 525/844 (62%), Gaps = 23/844 (2%)

Query: 32  LSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTE 91
           LS A+ YFNP FL ++  +VADLSRFE G   P G YRVD++ N+ ++ ++D+ F     
Sbjct: 42  LSSADLYFNPRFLADDPQAVADLSRFENGQELPPGTYRVDIYLNNGYMATRDVTF----- 96

Query: 92  NTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRL 151
           NTGD   G++PC  +  L  +GLN+++   +    ++ C+ L   V       D    RL
Sbjct: 97  NTGDSEQGIVPCLTRAQLASMGLNTASVAGMNLLADDACVPLTTMVRTLLRTLDVGQQRL 156

Query: 152 NITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN----RGNGNDSYFFSEL-SGIN 206
           N+TIPQ  + + A GYIPPE WD GI A LLNYNF+GN    R  GN  Y +  L SG+N
Sbjct: 157 NLTIPQAFMSNRARGYIPPELWDPGINAGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLN 216

Query: 207 IGPWRLRNNGSWNYF---RGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           IG WRLR+N +W+Y    R +G    +W +I TW++R IIPL+S L +GDG T  DIFDG
Sbjct: 217 IGAWRLRDNTTWSYNSSDRSSG-SKNKWQHINTWLERDIIPLRSRLTLGDGYTQGDIFDG 275

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           + FRG +L S DNM PDSQ+GFAP + GIAR  AQ+TI+QNG+ IY S V PG F I D+
Sbjct: 276 INFRGAQLASDDNMLPDSQRGFAPVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDI 335

Query: 324 HPTSSNGDLDVTIDERDGNQQNYT-IPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPF 382
           +   ++GDL VTI E     + +   P  T P+L  +    F           S++  P 
Sbjct: 336 YAAGNSGDLQVTIKEAVLAARRFLPYPIRTFPLLNVKAYSLFHYGRRIPYESRSRKK-PA 394

Query: 383 FFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRH 442
           F +     GLP  +T YGGTQL+  Y AF  G+G+N+G  GA+S+D+T A S L D S+H
Sbjct: 395 FSRVHYSNGLPAGWTIYGGTQLADRYRAFNFGIGKNMGALGALSVDMTQANSTLPDDSQH 454

Query: 443 EGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD-YDGEHRDEPI 501
           +G S+RFLY KS+N  GTN QL+GYRYST G++   D  Y RM GY  +  DG  + +P 
Sbjct: 455 DGQSVRFLYNKSLNESGTNIQLVGYRYSTSGYFNFADTTYSRMNGYNIETQDGVIQVKPK 514

Query: 502 IVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGIS 561
             +Y+NL ++++ +LQL V+Q L    +LY+SG+HQ YW TS+ D  +Q G  +++  I+
Sbjct: 515 FTDYYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAGLNTAFEDIN 574

Query: 562 YSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNS 621
           ++LS+S  ++      ++++ LNV++PF+     R   ++    A AS++ + + NG+ +
Sbjct: 575 WTLSYSLTKNAWQKGRDQMLALNVNIPFSHWL--RSDSKSQWRHASASYSMSHDLNGRMT 632

Query: 622 WLAGVGGTLLEGHNLSYHVSQG---DTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
            LAGV GTLLE +NLSY V  G   +        +   N++  YG    GY++  D   +
Sbjct: 633 NLAGVYGTLLEDNNLSYSVQTGYAGEAMEIAEVQATPLNYRGGYGNANIGYSHSDDIKQL 692

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
            + +SGGV+ H NG+TL QPL DT VL+K       + + + G      GYAV+ YAT Y
Sbjct: 693 YYGVSGGVLAHANGVTLGQPLNDTVVLVKRLAQKMQKSKTRRGAYR-LAGYAVLPYATEY 751

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NR+ALDTNT+ +++D++  +++VVPT+GA+VRA F  R+G++ L+T+T   KP+PFG+
Sbjct: 752 RENRVALDTNTLADNVDLDNAVANVVPTRGAIVRAEFKARVGIKLLMTLTHNNKPLPFGA 811

Query: 799 LVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVI 858
           +V   S+  + +V D+GQVYLSG PL+G++ V+WG+  N+ C+A+Y LP +S QQ +T +
Sbjct: 812 MVTSESSQSSGIVADNGQVYLSGMPLAGKVQVKWGEEENAHCVANYQLPPESQQQLLTQL 871

Query: 859 SAVC 862
           SA C
Sbjct: 872 SAEC 875



>ref|ZP_00731434.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E22]
          Length = 840

 Score =  665 bits (1715), Expect = 0.0
 Identities = 358/858 (41%), Positives = 514/858 (59%), Gaps = 56/858 (6%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSV---ADLSRFERG-NHQPAGVYRVDLWRNDEFI 79
           +L I  S  +Y    FNP FL EN   +    DLS ++     Q  G YRV ++ N+E +
Sbjct: 18  ALTIASSLPAYGGK-FNPKFL-ENVQGIDQHIDLSVYDSPVGQQIPGKYRVSVFVNEEKM 75

Query: 80  GSQDIVFESTTENTGDKSG-GLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVP 138
            S+ + F + +E     SG  LMPC ++V LE +G+   +FP L       C+   + +P
Sbjct: 76  ASRTLDFSTASEAKRKASGESLMPCLSRVQLEEMGVRVDSFPALKMSPPEACVAFDEIIP 135

Query: 139 DATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNG----- 193
            AT  FDF    L+++ PQ A++ +A G + P  WDEGIPALLL+Y+F+G+ G       
Sbjct: 136 QATSRFDFNTQTLHLSFPQAAMMMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGTGS 195

Query: 194 -----NDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSE 248
                +DSY+ +  SG+N+GPWRLRNN  WN   G      QW+N+GT + RAIIPLKS+
Sbjct: 196 SSDSTSDSYYLNLRSGLNVGPWRLRNNSIWNRTDGKN----QWDNVGTSLNRAIIPLKSQ 251

Query: 249 LVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFII 308
           + +GD  T  +IFD V  RG  L S D M PDSQ+GFAP VRGIA++ A+++I QNG++I
Sbjct: 252 ITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVI 311

Query: 309 YQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTA 368
           Y+++V PGAFEI DL+ TS +GDL V I E DG++Q +  P+S V I QREG  K+ L A
Sbjct: 312 YRTFVQPGAFEINDLYATSGSGDLTVIIKEADGSEQRFIQPFSAVAIFQREGYLKYSLAA 371

Query: 369 GDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLD 428
           G++R+GN     P F Q TA+ GLP   TAYGG  LSA+Y A  LGLG+N G  GAVS+D
Sbjct: 372 GEYRAGNYDSDKPHFGQFTAMYGLPWGMTAYGGALLSADYNALALGLGKNFGTIGAVSVD 431

Query: 429 VTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGY 488
           VT A+SQL +  + EG S RFLY+KS    GT+ +L+GY+YST G+YT  +    R    
Sbjct: 432 VTQAKSQLRNNEKEEGQSYRFLYSKSFEG-GTDLRLLGYKYSTSGYYTFQEATDVRS--- 487

Query: 489 EYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTW 548
             D D ++R           R+ ++ ++Q N++Q L D+GS+Y + T Q YWN    +  
Sbjct: 488 --DADSDYR-----------RYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENS 534

Query: 549 YQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYA 608
              GY      ++YS++++W  S    +++R+   +VS+P              L  A++
Sbjct: 535 LSAGYHGHIGRVNYSVAYTWTRSPEWEEDDRLWSFSVSIP--------------LGGAWS 580

Query: 609 SFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGG 667
           S+    + NG+ S  A V GTLLE  NLSY+V QG TSN  GY+GS    +    G +  
Sbjct: 581 SYRMTTDQNGKTSQQASVSGTLLEDRNLSYNVQQGYTSNGVGYSGSVNMGYMGGSGNIDV 640

Query: 668 GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           GYNY +D   VN+ + GGV+ H  GITLSQPLG++  ++ APGA G  + N +G+  DW 
Sbjct: 641 GYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWM 700

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           G AV+ Y T YR   + L ++T+G ++++++    VVPT+GA+VR+ FDTR+G R L+++
Sbjct: 701 GNAVVPYLTPYRETIVELRSDTLGQNVELQEAFQKVVPTRGAVVRSRFDTRVGYRVLMSL 760

Query: 788 TQ-GGKPVPFGSLVR--ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
            Q  G  VPFG+     + S   +S+VG++GQ+Y+SG P  GEL V WG+    RC   +
Sbjct: 761 KQANGNAVPFGATAALIDESKPASSIVGEEGQLYISGMPEEGELQVSWGNEQAQRCRVPF 820

Query: 845 VLPKQSLQQAVTVISAVC 862
            LP+     A+ ++ AVC
Sbjct: 821 RLPENKDNAAIVMVHAVC 838



>gb|AAO22845.1| putative fimbrial usher protein [Escherichia coli]
          Length = 843

 Score =  664 bits (1713), Expect = 0.0
 Identities = 358/858 (41%), Positives = 515/858 (60%), Gaps = 56/858 (6%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSV---ADLSRFERG-NHQPAGVYRVDLWRNDEFI 79
           +L I  S  +Y    FNP FL EN   +    DLS ++     Q  G YRV ++ N+E +
Sbjct: 21  ALTIASSLPAYGGK-FNPKFL-ENVQGIDQHIDLSVYDSPVGQQIPGKYRVSVFVNEEKM 78

Query: 80  GSQDIVFESTTENTGDKSG-GLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVP 138
            S+ + F + +E     SG  LMPC ++V LE +G+   +FP L       C+   + +P
Sbjct: 79  ASRTLDFSTASEAKRKASGESLMPCLSRVQLEEMGVRVDSFPALKMSPPEACVAFDEIIP 138

Query: 139 DATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNG----- 193
            AT  FDF    L+++ PQ A++ +A G + P  WDEGIPALLL+Y+F+G+ G       
Sbjct: 139 QATSRFDFNTQTLHLSFPQAAMMMTARGTVDPSRWDEGIPALLLDYSFSGSNGRNEGTGS 198

Query: 194 -----NDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSE 248
                +DSY+ +  SG+N+GPWRLRNN  WN   G      QW+N+GT + RAIIPLKS+
Sbjct: 199 SSDSTSDSYYPNLRSGLNVGPWRLRNNSIWNRTDGKN----QWDNVGTSLNRAIIPLKSQ 254

Query: 249 LVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFII 308
           + +GD  T  +IFD V  RG  L S D M PDSQ+GFAP VRGIA++ A+++I QNG++I
Sbjct: 255 ITLGDTATPGEIFDSVQMRGALLASDDEMLPDSQRGFAPVVRGIAKSNAEVSIEQNGYVI 314

Query: 309 YQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTA 368
           Y+++V PGAFEI DL+ TS +GDL V I E DG++Q +  P+S V I QREG  K+ L A
Sbjct: 315 YRTFVQPGAFEINDLYATSGSGDLTVIIKEADGSEQRFIQPFSAVAIFQREGYLKYSLAA 374

Query: 369 GDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLD 428
           G++R+GN     P F Q TA+ GLP   TAYGG  LSA+Y A  LGLG+N G  GAVS+D
Sbjct: 375 GEYRAGNYDSDKPHFGQFTAMYGLPWGMTAYGGALLSADYNALALGLGKNFGTIGAVSVD 434

Query: 429 VTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGY 488
           VT A+SQL +  + EG S RFLY+KS    GT+ +L+GY+YST G+YT  +    R    
Sbjct: 435 VTQAKSQLRNNEKEEGQSYRFLYSKSFEG-GTDLRLLGYKYSTSGYYTFQEATDVRS--- 490

Query: 489 EYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTW 548
             D D ++R           R+ ++ ++Q N++Q L D+GS+Y + T Q YWN    +  
Sbjct: 491 --DADSDYR-----------RYHKRSQIQGNITQQLGDYGSVYFNMTQQDYWNVDGKENS 537

Query: 549 YQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYA 608
              GY      ++YS++++W  S    +++R+   +VS+P              L  A++
Sbjct: 538 LSAGYHGHIGRVNYSVAYTWTRSPEWEEDDRLWSFSVSIP--------------LGGAWS 583

Query: 609 SFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLGG 667
           S+    + NG+ S  A V GTLLE  NLSY+V QG TSN  GY+GS    +    G +  
Sbjct: 584 SYRMTTDQNGKTSQQASVSGTLLEDRNLSYNVQQGYTSNGVGYSGSVNMGYMGGSGNIDV 643

Query: 668 GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           GYNY +D   VN+ + GGV+ H  GITLSQPLG++  ++ APGA G  + N +G+  DW 
Sbjct: 644 GYNYSKDNQQVNYGVRGGVIVHSEGITLSQPLGESLAIVSAPGARGGHVVNSSGVEVDWM 703

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           G AV+ Y T YR   + L ++T+G ++++++    VVPT+GA+VR+ FDTR+G R L+++
Sbjct: 704 GNAVVPYLTPYRETIVELRSDTLGQNVELQEAFQKVVPTRGAVVRSRFDTRVGYRVLMSL 763

Query: 788 TQ-GGKPVPFGSLVR--ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
            Q  G  VPFG+     + S   +S+VG++GQ+Y+SG P  GEL V WG+    RC   +
Sbjct: 764 KQANGNAVPFGATAALIDESKPASSIVGEEGQLYISGMPEEGELQVSWGNEQAQRCRVPF 823

Query: 845 VLPKQSLQQAVTVISAVC 862
            LP+     A+ +++AVC
Sbjct: 824 RLPENKDNAAIVMVNAVC 841



>ref|NP_290129.1| PapC-like porin protein involved in fimbrial biogenesis
           [Escherichia coli O157:H7 EDL933]
          Length = 857

 Score =  657 bits (1696), Expect = 0.0
 Identities = 351/884 (39%), Positives = 528/884 (59%), Gaps = 71/884 (8%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFL--LENGTSVADLSRFERGNHQPA-GVYRV 70
           T+    I   ++A+  +F ++A   FNP FL  ++      DL+ FE+G  Q   G+YRV
Sbjct: 9   TFSSFSISVVAVAVASTFSAHAGK-FNPKFLEDVQGVGQHVDLTMFEKGQEQQLPGIYRV 67

Query: 71  DLWRNDEFIGSQDIVFESTTENTGDKSG-GLMPCFNQVLLERIGLNSSAFPELAQQQNNK 129
            ++ N++ + ++ + F+  TE      G  L+PC ++  L  +G+   +FP L       
Sbjct: 68  SVYVNEQRMETRTLEFKEATEAQRKAMGESLVPCLSRTQLAEMGVRVESFPALNLVSAEA 127

Query: 130 CINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN 189
           C+   + +P A+ +FDF+  +L ++ PQ A+   A G +P   WDEGIPALLL+Y+F+G+
Sbjct: 128 CVPFDEIIPLASSHFDFSEQKLVLSFPQAAMHQVARGTVPESLWDEGIPALLLDYSFSGS 187

Query: 190 RG--------------NG------------NDSYFFSELSGINIGPWRLRNNGSWNYFRG 223
                           NG            +DSY+ +  SG+N+G WRLRN  +W++  G
Sbjct: 188 NSEYDSTGSSSSYVDDNGTVHHDDGKDTLKSDSYYLNLRSGLNLGAWRLRNYSTWSHSGG 247

Query: 224 NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQ 283
                 QW+NIGT + RAIIP K++L MGD  T  DIFD V  RG  L S + M PDSQ+
Sbjct: 248 KA----QWDNIGTSLSRAIIPFKAQLTMGDTATAGDIFDSVQMRGAMLASDEEMLPDSQR 303

Query: 284 GFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQ 343
           GFAP VRGIA++ A+++I QNG++IY++YV PGAFEI DL+PT+++GDL V I E DG++
Sbjct: 304 GFAPIVRGIAKSNAEVSIEQNGYVIYRTYVQPGAFEINDLYPTANSGDLTVIIKEADGSE 363

Query: 344 QNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQ 403
           Q +  P+S+VPI QREG  K+   AG++++GN   +SP F Q   + GLP   TAYGG  
Sbjct: 364 QRFIXPFSSVPIFQREGHLKYSFAAGEYQAGNYDSASPRFGQLDLIYGLPWGMTAYGGVL 423

Query: 404 LSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQ 463
           +S NY AF LG+G+N G  GA+S+DVT A+S+L +    +G S RFLY+KS  + GT+F+
Sbjct: 424 ISNNYNAFTLGIGKNFGYIGAISIDVTQAKSELNNDRDSQGQSYRFLYSKSFES-GTDFR 482

Query: 464 LMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQS 523
           L GYRYST GFYT  +    R +  + DY+               R+ ++  +Q N++Q 
Sbjct: 483 LAGYRYSTSGFYTFQEATDVRSDA-DSDYN---------------RYHKRSEIQGNLTQQ 526

Query: 524 LNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGL 583
           L  +GS+Y++ T Q YWN +        GY      +SYS+++SWN+S    +++R+   
Sbjct: 527 LGAYGSVYLNLTQQDYWNDAGKQNTVSAGYNGRIGKVSYSIAYSWNKSPEWDESDRLWSF 586

Query: 584 NVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG 643
           N+SVP              L RA++++    + +G+ +   GV GTLLE  NLSY V +G
Sbjct: 587 NISVP--------------LGRAWSNYRVTTDQDGRTNQQVGVSGTLLEDRNLSYSVQEG 632

Query: 644 DTSNN-GYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDT 702
             SN  G +G+A   +Q   G +  GY+Y +D   +N+ + GGV+ H  G+TLSQPLG+T
Sbjct: 633 YASNGVGNSGNANVGYQGGSGNVNVGYSYGKDYRQLNYSVRGGVIVHSEGVTLSQPLGET 692

Query: 703 NVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISS 762
             LI  PGA   R+ N  G+  DW G A++ YA  YR N I+L ++++G+ +DVE     
Sbjct: 693 MTLISVPGARNARVVNNGGVQVDWMGNAIVPYAMPYRENEISLRSDSLGDDVDVENAFQK 752

Query: 763 VVPTQGALVRANFDTRIGVRALITVTQ-GGKPVPFG---SLVRENSTGITSMVGDDGQVY 818
           VVPT+GA+VRA FDTR+G R L+T+ +  G PVPFG   +L+ +    ++S+VG++GQ+Y
Sbjct: 753 VVPTRGAIVRARFDTRVGYRVLMTLLRSAGSPVPFGATATLITDKQNEVSSIVGEEGQLY 812

Query: 819 LSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           +SG P  G +L++WG+ A+ +C+A Y L  +  Q  +  +SA C
Sbjct: 813 ISGMPEEGRVLIKWGNDASQQCVAPYKLSLELKQGGIIPVSANC 856



>ref|YP_001005441.1| outer membrane usher protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 emb|CAL11208.1| outer membrane usher protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 857

 Score =  644 bits (1662), Expect = 0.0
 Identities = 357/846 (42%), Positives = 515/846 (60%), Gaps = 55/846 (6%)

Query: 33  SYAESYFNPAFLLENGTSVA--DLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTT 90
           ++AE YFNP+ L     S A  DLS F +   Q  G YRVD++ N + I ++D+ F +  
Sbjct: 50  AWAEDYFNPSSLEIKDASYAAIDLSIFSQSGAQLPGTYRVDIYLNGQQIETRDVTFIAD- 108

Query: 91  ENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLL-KAVPDATINFDFAAM 149
                 +G L+       L  +G+  +AFP L QQ  +  +  L + +P A+ +FDF   
Sbjct: 109 ------NGSLLAEITPQQLADLGVKVAAFPALQQQPADLPVTQLGEFIPAASSSFDFNKQ 162

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTG------NRGNGNDSYFFSELS 203
           RL+++IPQ AL S A GYI P++WD+GIPAL++NYN +G      NR   N ++F +  S
Sbjct: 163 RLDVSIPQAALNSQARGYIDPKQWDQGIPALMVNYNLSGANSWQDNRPGSNSNHFLNLRS 222

Query: 204 GINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDG 263
           G+N GPWRLRN  +++    NG    QWNN+   +QR I  +K +L +GD  T  DI  G
Sbjct: 223 GLNWGPWRLRNYSTYSQ-SSNG--EPQWNNLTNTLQRDIHAIKGQLTLGDSYTPGDILSG 279

Query: 264 VGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDL 323
           V FRG +L S D+M PDS +GFAP VRGIA + AQ+TIRQN  +IYQ+YV PGAFEI DL
Sbjct: 280 VPFRGAQLASDDSMLPDSLRGFAPVVRGIADSNAQVTIRQNNNVIYQTYVPPGAFEINDL 339

Query: 324 HPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFF 383
            PTSS+GDL+VTI E DG ++++   +S+ PI+QREG  K+ L+AG +R G +   +P F
Sbjct: 340 FPTSSSGDLEVTIKETDGRERSFKQAFSSAPIMQREGSLKYALSAGQYRGGGNGSPTPNF 399

Query: 384 FQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHE 443
            Q +   G+P  FT Y G  +S++Y A  LG+G  LG+ G+VS DVT A++  +D +  +
Sbjct: 400 AQTSLAYGMPYGFTLYNGLLISSDYQAGALGVGIGLGSMGSVSADVTQAKTTFSDQTTRQ 459

Query: 444 GDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIV 503
           G S R  YAKS+   GTNF L  +RYST+GFY   +       G                
Sbjct: 460 GQSYRLQYAKSITATGTNFSLGSHRYSTEGFYDFSEANQLSDVG---------------- 503

Query: 504 NYHNL--RFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGIS 561
           + H+L    +++ R QL++SQSLNDFGSLY+S   Q YW     +    +GY  S  GIS
Sbjct: 504 SIHSLGRNNNKRSRTQLHISQSLNDFGSLYLSAYQQDYWQRKGYERSATLGYNISLSGIS 563

Query: 562 YSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNS 621
           YSL++S++++ G   N++   L+V++P          R N     +A+++ N +  G  S
Sbjct: 564 YSLNYSYSQTPGQQQNDQRASLSVNIPLG--------RHN-----WANYSINTSKGGATS 610

Query: 622 WLAGVGGTLLEGHNLSYHVSQGDTSN-NGYTGSATANWQAAYGTLGGGYNYDRDQHDVNW 680
              G+ G+ L   NLSY++ Q  +++  G +GS ++++  AYG +  GY++  +   +N+
Sbjct: 611 QQLGLSGSALADDNLSYNLQQSRSNHGGGNSGSLSSSYSGAYGQMNAGYSFGSNSRQLNY 670

Query: 681 QLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRY 740
            LSGGV+ H  G+TLSQ   DT VL++APGA GV + N  G+ TDWRGYAV+ YA+ YR 
Sbjct: 671 GLSGGVLAHPYGVTLSQSQSDTLVLVRAPGASGVGVGNGRGVKTDWRGYAVVPYASAYRQ 730

Query: 741 NRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL- 799
           N +ALDT +MG+SID++    +VVPT+GA+V ANF  R+G R LI ++  GKPVPFG++ 
Sbjct: 731 NSVALDTQSMGDSIDMDITSQNVVPTRGAVVLANFQPRLGSRVLINLSYQGKPVPFGAMA 790

Query: 800 -VRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLP--KQSLQQAVT 856
            ++++     S+VGD GQVYLSG P +G LLVQWG+    +C   + LP    +   AV 
Sbjct: 791 SLQDDGADSNSIVGDGGQVYLSGVPDNGNLLVQWGNQEKQQCQVKFTLPAADTNTTSAVR 850

Query: 857 VISAVC 862
           ++ AVC
Sbjct: 851 ILDAVC 856



>ref|NP_462539.1| long polar fimbrial outer membrane usher protein [Salmonella
           typhimurium LT2]
 sp|P43662|LPFC_SALTY Outer membrane usher protein lpfC precursor
 gb|AAL22498.1| long polar fimbrial outer membrane usher protein [Salmonella
           typhimurium LT2]
          Length = 842

 Score =  641 bits (1653), Expect = 0.0
 Identities = 348/859 (40%), Positives = 520/859 (60%), Gaps = 58/859 (6%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSV---ADLSRFE--RGNHQPAGVYRVDLWRNDEF 78
           +L I  +  +YA + FNP FL E+   +    DLS +E  +  H P G YRV +  N++ 
Sbjct: 21  ALMIAGTLPAYAGT-FNPRFL-EDVPGIDQHVDLSMYESNKAEHLP-GKYRVSVVVNEKK 77

Query: 79  IGSQDIVFESTTENTGDKSG-GLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAV 137
           + S+ + F++ TE    K G  L+PC ++V LE +G+   +FP L       C+     +
Sbjct: 78  MESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDII 137

Query: 138 PDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN----- 192
           P A  +FDFA   L ++ PQ A+  +A G +P  +WDEG+ ALL++YNF+G+  +     
Sbjct: 138 PQAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHD 197

Query: 193 -----GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKS 247
                 +DSY+ +  SG+N+G WRLRN  +W    GN      W+NIGT + RAI+PLKS
Sbjct: 198 SETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNN----TWDNIGTSLSRAIVPLKS 253

Query: 248 ELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFI 307
           +L +GD +T  DIFD V  RGV+L S + M PDSQ+GFAP +RGIA++ A++T+ QN ++
Sbjct: 254 QLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYV 313

Query: 308 IYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLT 367
           IY+++V PGAFEI DL+PTS++GDL VTI E DG++Q +  P+S+V +LQREG  K+ L+
Sbjct: 314 IYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLS 373

Query: 368 AGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSL 427
           AG++R+GN   + P F Q  A+ GLP  FT YGG   S +Y +   GLG+N G  GA+S+
Sbjct: 374 AGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISI 433

Query: 428 DVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEG 487
           DVT A+S+LA+    EG S RFLY+KS N+ GT+F+L+GY+YST G+YT  +    R   
Sbjct: 434 DVTQAKSKLANEENSEGQSYRFLYSKSFNS-GTDFRLLGYKYSTSGYYTFQEATDVRS-- 490

Query: 488 YEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDT 547
              D D  +        YH     ++ ++Q NV+Q L  +GS+Y + T Q YWN      
Sbjct: 491 ---DADSSYS------QYH-----KRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQR 536

Query: 548 WYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAY 607
               GY      ++YS++++W +S    +++R++  ++S+P              L R +
Sbjct: 537 SLNAGYNGRIGRVNYSVAYTWTKSPEWDESDRLLSFSMSIP--------------LGRVW 582

Query: 608 ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLG 666
           ++++   + +G+ +   GV GT LE HNL+Y V +G  SN  G +GS   ++Q   G+  
Sbjct: 583 SNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGSAS 642

Query: 667 GGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDW 726
            GYNY+RD   VN+ L GGV+ H  GITLSQPLG++  +I APGA G  + N  G+  DW
Sbjct: 643 LGYNYNRDGQQVNYGLRGGVIAHSEGITLSQPLGESMAIISAPGARGAHVINNGGVEVDW 702

Query: 727 RGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALIT 786
            G AV+ Y T YR   ++L ++++ N +D++    +VVPT+GA+VRA FDTR+G R L+ 
Sbjct: 703 MGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMN 762

Query: 787 VTQ-GGKPVPFG--SLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAH 843
           +TQ  GK VPFG  + + + +   +S+VG+DGQ+Y+SG P  G L V WG     +C   
Sbjct: 763 LTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISGMPEKGALQVNWGKDQAQQCRVA 822

Query: 844 YVLPKQSLQQAVTVISAVC 862
           + LP+Q     V + +AVC
Sbjct: 823 FTLPEQQDNTGVVMANAVC 841



>ref|ZP_01534420.1| fimbrial biogenesis outer membrane usher protein [Serratia
           proteamaculans 568]
 gb|EAV33811.1| fimbrial biogenesis outer membrane usher protein [Serratia
           proteamaculans 568]
          Length = 840

 Score =  639 bits (1647), Expect = 0.0
 Identities = 358/878 (40%), Positives = 509/878 (57%), Gaps = 61/878 (6%)

Query: 6   TTDIPQRYTWC-LAGICYSSLAILPSFLSYAESYFNPAFLLENGTSV---ADLSRFERGN 61
           +T+  +RY    LAG+    L + P+  + +  YFNPA LL  GT      DLS FE   
Sbjct: 2   STETDRRYRQVPLAGLIVLQLVLQPT--AQSRDYFNPA-LLTIGTPQQDGVDLSAFENAG 58

Query: 62  HQPAGVYRVDLWRNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPE 121
            Q  GVYRVD++ N + + ++ + F +       K  GL PC +   L   G+  S FP 
Sbjct: 59  GQIPGVYRVDIFLNQQMVATRSVTFHADP-----KGDGLQPCLSMAELGDYGVQVSRFPT 113

Query: 122 LAQQQNNKCINLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALL 181
           L    +  C++L  A+P A+    F   RL ++IPQ A+     GY+ P +WDEG+PALL
Sbjct: 114 LGAADST-CVDLT-AIPQASSRLQFNQQRLLLSIPQAAIKQQPRGYVSPAQWDEGVPALL 171

Query: 182 LNYNFTG--------NRGNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNN 233
           LNY+ +G        +  NGN+ Y  +   G N+GPWRLRN  +W     +    ++WN 
Sbjct: 172 LNYSLSGANTYARNESGSNGNNQYA-NLRPGANLGPWRLRNYTTWGR---DSDGQDKWNT 227

Query: 234 IGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIA 293
           + T+ QR +I L+S++ +GD N  S++FD V FRG +L S D+M PDS +G+AP VRGIA
Sbjct: 228 VYTYAQRNLIGLQSQMTLGDSNAPSEVFDAVPFRGGQLASDDDMLPDSLRGYAPIVRGIA 287

Query: 294 RTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTV 353
           RT AQ+ +RQNG+ IY++YV+PGAF I D++PT  +GDL VTI E DG++Q   +P++++
Sbjct: 288 RTNAQVVVRQNGYEIYRTYVAPGAFVIDDMYPTGGSGDLHVTIKEADGSEQQLVVPFASL 347

Query: 354 PILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLL 413
           P+LQREGR K+ LTAG +RS +         QGTA+ GLP   T YGG Q++  Y +  L
Sbjct: 348 PVLQREGRLKYSLTAGQYRSYDHSVDKSALMQGTAIYGLPWNSTLYGGVQMAQRYQSAAL 407

Query: 414 GLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQG 473
           G+G NLG+WGA S+DVT +R Q     R  G S R  Y+K+M   GTNF + GYRYST G
Sbjct: 408 GVGNNLGDWGAFSVDVTQSRGQQKGLDRQTGQSWRMRYSKNMVQTGTNFAIAGYRYSTAG 467

Query: 474 FYTLDDV--AYRRMEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSL 530
           FY L +V   +R  E   + Y+                  R++R +L++SQ L  D GSL
Sbjct: 468 FYALSEVLDTWRSGEMAYWAYE-----------------RRRNRAELSMSQQLWQDGGSL 510

Query: 531 YISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESVGIP--DNERIVGLNVSVP 588
            +S   + YWN+  S     +GY++SW GISY +++S+N +   P   N++ +  N+++P
Sbjct: 511 SLSAIREDYWNSDRSMASLGLGYSNSWQGISYGVNWSYNRNSFGPQRSNDQQIVFNLNMP 570

Query: 589 FNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG-DTSN 647
            N+            + ++ ++N N    G  S   G+ G  L  ++LS+   Q   +  
Sbjct: 571 LNLWDN---------NSSWVNYNLNNTKGGATSQSLGLSGMALRDNSLSWAAQQNYGSRG 621

Query: 648 NGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIK 707
            GY G+   +++  YG L  GY YDR+   +N+ L G VV H +G+TL QPLG+T  L+ 
Sbjct: 622 QGYGGNLNLDYKGTYGELSSGYGYDRNSQRLNYGLQGSVVAHASGVTLGQPLGETAALVA 681

Query: 708 APGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQ 767
            PGA GV + NQTG+ TDWRGYA++ Y T YR   + L T T+    DV +    VVPT+
Sbjct: 682 MPGAAGVSVNNQTGVRTDWRGYALVPYLTPYRSTDVTLATETLSADTDVAQTSHRVVPTR 741

Query: 768 GALVRANFDTRIGVRALITVTQG-GKPVPFGSLVRE--NSTGITSMVGDDGQVYLSGAPL 824
           GALVRA F  ++G RAL+T+TQG GKPVPFG+ V E   +    S+VGD GQVYLSG   
Sbjct: 742 GALVRATFSAKVGARALMTLTQGNGKPVPFGATVSEADQNAAQGSIVGDAGQVYLSGLAE 801

Query: 825 SGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
            G+L V WG+G   +C  +Y LP       V  I+ VC
Sbjct: 802 QGKLRVLWGNGNTGQCWVNYQLPTTPQPGGVVQINEVC 839



>ref|ZP_01536501.1| fimbrial biogenesis outer membrane usher protein [Serratia
           proteamaculans 568]
 gb|EAV31412.1| fimbrial biogenesis outer membrane usher protein [Serratia
           proteamaculans 568]
          Length = 837

 Score =  636 bits (1640), Expect = e-180
 Identities = 348/858 (40%), Positives = 508/858 (59%), Gaps = 57/858 (6%)

Query: 23  SSLAILPSFLSYAESYFNPAFLLENGT---SVADLSRFERGNHQPAGVYRVDLWRNDEFI 79
           ++LA+ P+    A  YFNPA LLE G    S  DLS FE    QP G YRVD+  N+   
Sbjct: 18  TALALSPAV--QARDYFNPA-LLEQGDARQSQTDLSVFEDAGGQPPGTYRVDILLNERLT 74

Query: 80  GSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAVPD 139
            ++ + F +  +       GL PC +   L   G+ ++ FP L    +++C NL  A+P 
Sbjct: 75  ETRMVTFSAAPD-------GLQPCLSVADLADWGVRTALFPALGSA-DSRCANLA-AIPQ 125

Query: 140 ATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTG--------NRG 191
           A+    F+  +L ++IPQ A+     GY+P  +WDEGIPAL+LNY+ TG         RG
Sbjct: 126 ASAQLRFSQQQLVLSIPQAAMTPQPRGYVPSSQWDEGIPALILNYSLTGADTTARGSGRG 185

Query: 192 NGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVM 251
           + ++S F +   G+N GPWRLRN  +W   R +    ++W+ + T+ QR +I L+S+L +
Sbjct: 186 SDSNSQFANLRPGLNAGPWRLRNYTTW---RRSSDGKDKWDTVYTYAQRNLIGLQSQLTL 242

Query: 252 GDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQS 311
           GD N  +++FD V FRGV+L S D M PDS +G+AP VRGIART AQ+ +RQNG+ IY++
Sbjct: 243 GDSNAPAEVFDAVPFRGVQLASDDEMLPDSLRGYAPVVRGIARTNAQVVVRQNGYEIYRT 302

Query: 312 YVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDF 371
           +V+PGAF I D++PT  +GDL VTI E DG++Q   +P++++P+LQREGR K+ LT G +
Sbjct: 303 FVAPGAFVINDMYPTGGSGDLQVTIKEADGSEQQLVVPFASLPVLQREGRLKYSLTGGQY 362

Query: 372 RSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTH 431
           RS +         QGTA+ GLP   T YGG Q + +Y +  LGLG NLG WGA S+D+T 
Sbjct: 363 RSYDRSVDKSALVQGTAIYGLPWNTTLYGGVQAAQHYQSAALGLGNNLGEWGAFSVDMTQ 422

Query: 432 ARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD 491
           +RSQ  D     G S R  Y+K++   GTNF + GYRYST GFY+L +V    ++G+   
Sbjct: 423 SRSQPKDQDSATGQSWRVRYSKNLVQTGTNFAIAGYRYSTAGFYSLAEV----LDGWRSS 478

Query: 492 YDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLN-DFGSLYISGTHQKYWNTSDSDTWYQ 550
                ++E            R++R +L+++Q L    GSL +S   + YWN+  S     
Sbjct: 479 STPFWQNE-----------RRRNRAELSMNQQLGPQAGSLSLSAVREDYWNSERSLASLG 527

Query: 551 VGYTSSWVGISYSLSFSWNESV--GIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYA 608
           +GY++SW GISY +++S+N +       N++ + LN++VP N+            + A+ 
Sbjct: 528 LGYSNSWRGISYGVNWSYNRNTQGATRSNDQQIALNLNVPLNLWDN---------NNAWV 578

Query: 609 SFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGG 667
           ++  N    G  S   G+ G  L  ++LS+ V Q   +   GY G++  +++  YG +  
Sbjct: 579 NYGLNSTKGGATSHNLGLSGVALRDNSLSWGVQQTYGSRGQGYGGNSNLDYRGTYGEVTA 638

Query: 668 GYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWR 727
           GY YD+D   +N+ L G VV H+NGITL QPLG+T  L+ APGA GV + NQTG+ TD+R
Sbjct: 639 GYGYDKDSRRLNYGLQGSVVAHQNGITLGQPLGETAALVAAPGAPGVSVSNQTGVRTDYR 698

Query: 728 GYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITV 787
           GYA++ Y T YR   +AL+  T+    ++E+N   V PT+GALVRA F  ++G R L+T+
Sbjct: 699 GYALVPYLTPYRNGNVALNPETLPTDAEIEQNSQRVTPTRGALVRATFTAKVGARVLMTL 758

Query: 788 TQG-GKPVPFGSLVRENSTGIT--SMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHY 844
           TQ  G+PVPFG+ V E        S+VGD GQVYLSG   SG L V+WG+G+   C  +Y
Sbjct: 759 TQADGRPVPFGATVSETDQNAAQGSIVGDSGQVYLSGLADSGSLRVKWGNGSGGECRVNY 818

Query: 845 VLPKQSLQQAVTVISAVC 862
            LP  +    +  I  +C
Sbjct: 819 RLPTGAPVGGIMQIEGIC 836



>ref|ZP_00823997.1| COG3188: P pilus assembly protein, porin PapC [Yersinia mollaretii
           ATCC 43969]
          Length = 842

 Score =  632 bits (1630), Expect = e-179
 Identities = 355/844 (42%), Positives = 503/844 (59%), Gaps = 48/844 (5%)

Query: 33  SYAESYFNPAFLLENGTSVA--DLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTT 90
           ++AE YFNP  L     S A  DL+ F +   Q  G YRVD++ N + I ++D+ F    
Sbjct: 32  TWAEDYFNPGSLEIKDASYAAIDLTIFSQSGAQLPGSYRVDIYLNGQQIETRDVNFIQD- 90

Query: 91  ENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLL-KAVPDATINFDFAAM 149
                 +G L+       L  +G+  +AFP L QQ  +  +  L + +P A+  FDF   
Sbjct: 91  ------NGQLLAEITPQQLADLGVKVAAFPALQQQPADLPVTQLGQFIPAASSQFDFNKQ 144

Query: 150 RLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGND----SYFFSELSGI 205
           RL+++IPQ AL S A GYI P++WD+GIPAL+LNYN +G     N     S+F +  SG+
Sbjct: 145 RLDLSIPQAALNSQARGYIDPKQWDQGIPALMLNYNLSGANSKQNSQSSSSHFLNLRSGL 204

Query: 206 NIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVG 265
           N GPWRLRNN +++    NG    QWN +   +QR I  +K +L +GD  T  DI  GV 
Sbjct: 205 NWGPWRLRNNSTYSQ-SSNG--QRQWNMLTNTLQRDIHAIKGQLTLGDSYTPGDILTGVP 261

Query: 266 FRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHP 325
           FRGV+L S D+M PDS +GFAP VRGIA + AQ+TIRQN  +IYQ+YV PGAF I DL P
Sbjct: 262 FRGVQLASDDSMLPDSLRGFAPVVRGIAESNAQVTIRQNSNVIYQTYVPPGAFVIDDLFP 321

Query: 326 TSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQ 385
           TSS+GDL+VTI E DG ++++   +S  PI+QREG  K+ L+AG +R   +   +P F Q
Sbjct: 322 TSSSGDLEVTIKEADGRERSFKQAFSAAPIMQREGSLKYALSAGQYRGYGNGSPTPHFAQ 381

Query: 386 GTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGD 445
            +   G+P  FT Y G  +SA+Y A  LG+G  LG+ G+VS DVT A+++ AD S  +G 
Sbjct: 382 TSLAYGMPYGFTLYNGLLISADYQAGALGVGIGLGSLGSVSADVTQAKTRFADDSSRQGQ 441

Query: 446 SIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNY 505
           S R  YAKS+   GTNF L  +RYST+GFY   +       G               +N 
Sbjct: 442 SYRLQYAKSITATGTNFSLGSHRYSTEGFYDFSEANQLTGVG--------------SINS 487

Query: 506 HNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLS 565
                +++ R Q+++SQSL+DFGSLY+S   Q YW     +    +GY  +  GI+Y L+
Sbjct: 488 LGRNNNKRSRTQVHISQSLSDFGSLYLSAYQQDYWQRKGYERSATLGYNVNIHGINYGLN 547

Query: 566 FSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAG 625
           +S++++ G   N++ V L++++P +            L  ++AS++ N N  G  S   G
Sbjct: 548 YSYSQTPGQLQNDQRVSLSLNIPLS----------QWLPNSWASYSVNSNKGGATSQQLG 597

Query: 626 VGGTLLEGHNLSYHVSQGDTS-NNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSG 684
           + G+ LE +NLSY++ Q  T+   G +GS  +++  AYG L  GY+Y      +N+ LSG
Sbjct: 598 LSGSALEENNLSYNLQQSRTTRGGGNSGSLNSSYSGAYGQLSAGYSYGSHSRQLNYGLSG 657

Query: 685 GVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIA 744
           GV+ H  G+TLSQ   DT VL++APGA GV + +  G+ TDWRGYAV+ YAT YR N +A
Sbjct: 658 GVLAHPYGVTLSQSQSDTLVLVRAPGASGVGVGSGRGVKTDWRGYAVVPYATSYRQNTVA 717

Query: 745 LDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVR--- 801
           LDT +MG SID++    +VVPT+GA+V ANF  R+G R LI ++  G+PVPFG++     
Sbjct: 718 LDTQSMGESIDMDITSQNVVPTRGAVVLANFKPRLGSRVLINLSYQGQPVPFGAMASLQD 777

Query: 802 -ENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLP--KQSLQQAVTVI 858
            E  +  +S+VGD GQVYLSG P  G+L VQWG+    +C   + LP  +      V ++
Sbjct: 778 DEAESANSSIVGDGGQVYLSGVPDKGQLQVQWGNQVKQQCQVKFTLPAAEPDAHSTVRML 837

Query: 859 SAVC 862
            AVC
Sbjct: 838 DAVC 841



>gb|AAA73968.1| lpfC gene product
          Length = 842

 Score =  629 bits (1621), Expect = e-178
 Identities = 343/859 (39%), Positives = 516/859 (60%), Gaps = 58/859 (6%)

Query: 24  SLAILPSFLSYAESYFNPAFLLENGTSV---ADLSRFE--RGNHQPAGVYRVDLWRNDEF 78
           +L I  +  +YA + FNP FL E+   +    DLS +E  +  H P G YRV +  N++ 
Sbjct: 21  ALMIAGTLPAYAGT-FNPRFL-EDVPGIDQHVDLSMYESNKAEHLP-GKYRVSVVVNEKK 77

Query: 79  IGSQDIVFESTTENTGDKSG-GLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAV 137
           + S+ + F++ TE    K G  L+PC ++V LE +G+   +FP L       C+     +
Sbjct: 78  MESRTLEFKAATEAQRAKMGESLVPCLSRVQLEDMGVRIDSFPALKMAPPEACVAFDDII 137

Query: 138 PDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGN----- 192
           P A  +FDFA   L ++ PQ A+  +A G +P  +WDEG+ ALL++YNF+G+  +     
Sbjct: 138 PQAASHFDFADQTLIMSFPQAAMKQTARGTVPESQWDEGVNALLVDYNFSGSNASYDAHD 197

Query: 193 -----GNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKS 247
                 +DSY+ +  SG+N+G WRLRN  +W    GN      W+NIGT + RAI+PLKS
Sbjct: 198 SETSYNSDSYYLNLRSGMNLGAWRLRNYSTWTRNDGNN----TWDNIGTSLSRAIVPLKS 253

Query: 248 ELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFI 307
           +L +GD +T  DIFD V  RGV+L S + M PDSQ+GFAP +RGIA++ A++T+ QN ++
Sbjct: 254 QLTLGDTSTAGDIFDSVQMRGVQLTSDEEMLPDSQRGFAPVIRGIAKSNAEVTVEQNNYV 313

Query: 308 IYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLT 367
           IY+++V PGAFEI DL+PTS++GDL VTI E DG++Q +  P+S+V +LQREG  K+ L+
Sbjct: 314 IYRTFVQPGAFEINDLYPTSNSGDLTVTIKESDGSEQKFVQPFSSVALLQREGHLKYSLS 373

Query: 368 AGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSL 427
           AG++R+GN   + P F Q  A+ GLP  FT YGG   S +Y +   GLG+N G  GA+S+
Sbjct: 374 AGEYRAGNYNSAEPKFGQLDAMYGLPYGFTVYGGAIFSDDYYSLAGGLGKNFGYIGAISI 433

Query: 428 DVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEG 487
           DVT A+S+LA+    EG S RFLY+KS N+ GT+F+L+GY+YST G+YT  +    R   
Sbjct: 434 DVTQAKSKLANEENSEGQSYRFLYSKSFNS-GTDFRLLGYKYSTSGYYTFQEATDVRT-- 490

Query: 488 YEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDT 547
              D D  +        YH     ++ ++Q NV+Q L  +GS+Y + T Q YWN      
Sbjct: 491 ---DADSSYS------QYH-----KRSQIQGNVTQQLGAWGSVYFNVTQQDYWNDEGKQR 536

Query: 548 WYQVGYTSSWVGISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAY 607
               GY      ++YS++++W +S    +++R++  ++S+P              L R +
Sbjct: 537 SLNAGYNGRIGRVNYSVAYTWTKSPEWDESDRLLSFSMSIP--------------LGRVW 582

Query: 608 ASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNN-GYTGSATANWQAAYGTLG 666
           ++++   + +G+ +   GV GT LE HNL+Y V +G  SN  G +GS   ++Q   G+  
Sbjct: 583 SNYHLTTDQHGRTNQQLGVSGTALEDHNLNYSVQEGYGSNGVGNSGSVNLDYQGGVGSAS 642

Query: 667 GGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDW 726
            GYN++RD   V  +  GGV+ H  GITLSQPLG++  +I APGA    + N  G+  DW
Sbjct: 643 LGYNHNRDGQQVELRFGGGVIAHSEGITLSQPLGESMAIISAPGARARHVINNGGVEVDW 702

Query: 727 RGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALIT 786
            G AV+ Y T YR   ++L ++++ N +D++    +VVPT+GA+VRA FDTR+G R L+ 
Sbjct: 703 MGNAVVPYLTPYRETEVSLRSDSLNNQVDLDTASVNVVPTRGAIVRARFDTRVGYRVLMN 762

Query: 787 VTQ-GGKPVPFG--SLVRENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAH 843
           +TQ  GK VPFG  + + + +   +S+VG+DGQ+Y+SG    G L V WG     +C   
Sbjct: 763 LTQANGKAVPFGATATLLDTTKESSSIVGEDGQLYISGMRQKGALQVNWGKDQAQQCRVA 822

Query: 844 YVLPKQSLQQAVTVISAVC 862
           + LP+Q     V + +AVC
Sbjct: 823 FTLPEQQDNTGVVMANAVC 841



>ref|ZP_00723839.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 714

 Score =  624 bits (1608), Expect = e-176
 Identities = 312/714 (43%), Positives = 465/714 (65%), Gaps = 17/714 (2%)

Query: 164 AHGYIPPEEWDEGIPALLLNYNFTGNRGN-------GNDSYFFSEL-SGINIGPWRLRNN 215
           A GY+ P+ W+EGI A LLNY+F GN  N       G  +Y +  L SGINIG WRLR+N
Sbjct: 2   ARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDN 61

Query: 216 GSWNYFRG--NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYS 273
            +W+Y+ G  N   S +W +I T  +R IIPL+S L +GD  T  DIFD V FRG+++ S
Sbjct: 62  STWSYYSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINS 121

Query: 274 SDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLD 333
           ++ M PDSQ GFAP + GIAR  AQ++++QNG+ +YQ+ V PG F I D++  ++ GDL 
Sbjct: 122 TEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQ 181

Query: 334 VTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLP 393
           VTI E DG+ Q   +PYS+VP+LQR G  ++ L  G++RSGN+ QSSP F QG+ + GL 
Sbjct: 182 VTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFIQGSLMHGLE 241

Query: 394 QEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLYAK 453
             +T YGG Q++ +Y AF LG+G++LG +GA S D+T A + LAD +RH G S++ +Y+K
Sbjct: 242 GNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADGTRHSGQSVKSVYSK 301

Query: 454 SMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY-DYDGEHRDEPIIVNYHNLRFSR 512
           S    GTN Q+ GYRYSTQGFY L D AY RM GY      G+  ++   ++Y NL +S+
Sbjct: 302 SFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTNEQTQFIDYFNLFYSK 361

Query: 513 KDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESV 572
           + + Q+++SQ L ++G+ + S + Q YWNTS SD     G    +  I+ SL++S++ ++
Sbjct: 362 RGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNI 421

Query: 573 GIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLE 632
              D + ++   ++VPF+     R   ++A   + AS++ + +  G  + L+GV GTLL 
Sbjct: 422 WQNDRDHLLAFTLNVPFS--HWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLP 479

Query: 633 GHNLSYHVSQGDT----SNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVG 688
            +NL+Y V  G+T    +++G +G ++ N++ AYG    GY+   D   + + +SGG++ 
Sbjct: 480 DNNLNYSVQVGNTHGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIA 539

Query: 689 HENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTN 748
           H +GIT  QPLGDT VL+KAPGA  V+IENQTGI TDWRGYA++ +AT YR NR+AL+ N
Sbjct: 540 HADGITFGQPLGDTMVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNAN 599

Query: 749 TMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTGIT 808
           ++ +++++++ + +V+PT GA+ RA F+ +IG + L+T+  G K VPFG++V        
Sbjct: 600 SLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNG 659

Query: 809 SMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           S+V ++GQVYL+G P SG+L V WG   NS CI  Y LP+ S    +   +A+C
Sbjct: 660 SIVAENGQVYLTGLPQSGKLQVSWGKDKNSNCIVEYKLPEVSPGTLLNQQTAIC 713



>ref|ZP_00724111.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           F11]
          Length = 714

 Score =  619 bits (1596), Expect = e-175
 Identities = 311/714 (43%), Positives = 464/714 (64%), Gaps = 17/714 (2%)

Query: 164 AHGYIPPEEWDEGIPALLLNYNFTGNRGN-------GNDSYFFSEL-SGINIGPWRLRNN 215
           A GY+ P+ W+EGI A LLNY+F GN  N       G  +Y +  L SGINIG WRLR+N
Sbjct: 2   ARGYVSPDLWEEGINAGLLNYSFNGNSINNRSNHNAGKSNYAYLNLQSGINIGSWRLRDN 61

Query: 216 GSWNYFRG--NGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRLYS 273
            +W+Y  G  N   S +W +I T  +R IIPL+S L +GD  T  DIFD V FRG+++ S
Sbjct: 62  STWSYNSGSSNSSDSNKWQHINTSAERDIIPLRSRLTVGDSYTDGDIFDSVNFRGLKINS 121

Query: 274 SDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGDLD 333
           ++ M PDSQ GFAP + GIAR  AQ++++QNG+ +YQ+ V PG F I D++  ++ GDL 
Sbjct: 122 TEAMLPDSQHGFAPVIHGIARGTAQVSVKQNGYDVYQTTVPPGPFTIDDINSAANGGDLQ 181

Query: 334 VTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGGLP 393
           VTI E DG+ Q   +PYS+VP+LQR G  ++ L  G++RSGN+ QSSP F Q + + GL 
Sbjct: 182 VTIKEADGSIQTLYVPYSSVPVLQRAGYTRYALAMGEYRSGNNLQSSPKFVQASLMHGLK 241

Query: 394 QEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLYAK 453
             +T YGG Q++ +Y AF LG+G++LG +GA S D+T A + LAD +RH G S++ +Y+K
Sbjct: 242 GNWTPYGGMQIAEDYQAFNLGIGKDLGLFGAFSFDITQANTTLADDTRHSGQSVKSVYSK 301

Query: 454 SMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEY-DYDGEHRDEPIIVNYHNLRFSR 512
           S    GTN Q+ GYRYSTQGFY L D AY RM GY      G+  ++ + ++Y NL +S+
Sbjct: 302 SFYQTGTNIQVAGYRYSTQGFYNLSDSAYSRMSGYTVKPPTGDTSEQTLFIDYFNLFYSK 361

Query: 513 KDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNESV 572
           + + Q+++SQ L ++G+ + S + Q YWNTS SD     G    +  I+ SL++S++ ++
Sbjct: 362 RGQEQISISQQLGNYGTTFFSASRQSYWNTSRSDQQISFGLNVPFGDITTSLNYSYSNNI 421

Query: 573 GIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLE 632
              D + ++   ++VPF+     R   ++A   + AS++ + +  G  + L+GV GTLL 
Sbjct: 422 WQNDRDHLLAFTLNVPFS--HWMRTDSQSAFRNSNASYSMSNDLKGGMTNLSGVYGTLLP 479

Query: 633 GHNLSYHV----SQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVG 688
            +NL+Y V    +QG  +++G +G ++ N++ AYG    GY+   D   + + +SGG++ 
Sbjct: 480 DNNLNYSVQVGNTQGGNTSSGTSGYSSLNYRGAYGNTNVGYSRSGDSSQIYYGMSGGIIA 539

Query: 689 HENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTN 748
           H +GIT  QPLGDT VL+KAPGA  V+IENQTGI TDWRGYA++ +AT YR NR+AL+ N
Sbjct: 540 HADGITFGQPLGDTIVLVKAPGADNVKIENQTGIHTDWRGYAILPFATEYRENRVALNAN 599

Query: 749 TMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENSTGIT 808
           ++ +++++++ + +V+PT GA+ RA F+ +IG + L+T+  G K VPFG++V        
Sbjct: 600 SLADNVELDETVVTVIPTHGAIARATFNAQIGGKVLMTLKYGNKSVPFGAIVTHGENKNG 659

Query: 809 SMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           S+V ++GQVYL+G P SG+L V WG+  NS CI  Y LP  S    +   +A+C
Sbjct: 660 SIVAENGQVYLTGLPQSGKLQVSWGNDKNSNCIVDYKLPAVSPGTLLNQQTAIC 713



>ref|NP_929417.1| hypothetical protein plu2157 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 emb|CAE14450.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 846

 Score =  601 bits (1550), Expect = e-170
 Identities = 332/848 (39%), Positives = 499/848 (58%), Gaps = 58/848 (6%)

Query: 33  SYAESYFNPAFLLENGTSVA-----DLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFE 87
           +Y+E YFN    LE GT        DLS F + ++ P G+Y VD++ N + I ++++ F 
Sbjct: 38  TYSEDYFN-IHALEIGTDFGSPEDIDLSIFTQDDYPP-GIYWVDIYLNRDKIDTRNVTFV 95

Query: 88  STTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQ-QQNNKCINLLKAVPDATINFDF 146
           +           L+P      L+ +G+   +FPEL       +  +L + +P A+  F+F
Sbjct: 96  TINNK-------LLPKLTIQQLQDMGVKIDSFPELISLPPETELSDLSQYIPSASTTFNF 148

Query: 147 AAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTG------NRGNGNDSYFFS 200
           +  RL+I+IPQ  L S A GY+ PE W +G+ +LL+NYN++G      N      +++ +
Sbjct: 149 SQQRLDISIPQAILNSQARGYVSPELWQQGLTSLLINYNYSGSNTWQDNPSGSTQTHYLN 208

Query: 201 ELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDI 260
             +G N   WRLRN  ++          + W +I T++QR I  LK +L +GD  T S I
Sbjct: 209 LRTGANWQAWRLRNYSTYTS------RDKSWKSINTYLQRDIHALKGQLTLGDSFTPSYI 262

Query: 261 FDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEI 320
           F+GV FRG++L S DNM PDS QGFAP+VRGIA++ AQ+TI+QNG+IIYQ+YVSPG F I
Sbjct: 263 FEGVQFRGLQLVSDDNMLPDSLQGFAPSVRGIAQSNAQVTIKQNGYIIYQTYVSPGPFVI 322

Query: 321 TDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSS 380
            DL PT+++G+LDV I E DG +   T  +ST+PI+ REG  ++ +T G ++S N++   
Sbjct: 323 NDLFPTTTSGNLDVIIKEADGQEYRSTQSFSTIPIMLREGGLQYSITLGQYQSSNNRGRE 382

Query: 381 PFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADAS 440
           P F QG  + G     TAYGGT  S +Y +  LG G N G  G++S D+THA + L    
Sbjct: 383 PNFTQGALVYGFSNNITAYGGTIFSKDYQSVALGSGYNFGILGSLSFDITHANTDLPSNI 442

Query: 441 RHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEP 500
             +G S RF YAK ++  GTNF L GYRYST GFY   +           D +  ++ + 
Sbjct: 443 STKGQSYRFQYAKDLSLTGTNFTLAGYRYSTHGFYDFKEA---------NDIENSNKSD- 492

Query: 501 IIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGI 560
                   R +++ +LQL+++QSL +FGSLY+S   Q YW     +     GY++++  I
Sbjct: 493 -----WRYRTNKRSKLQLHINQSLGNFGSLYLSAFQQNYWQQPGYERNINAGYSTNYNNI 547

Query: 561 SYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQN 620
           +YSL++++++      NE++   ++ +P +   K  +T          S+N N N N   
Sbjct: 548 NYSLNYTYSQLPDTNKNEQLFSFSIQIPLDRWLKNSWT----------SYNFNTNKNKDI 597

Query: 621 SWLAGVGGTLLEGHNLSYHVSQGDTSN-NGYTGSATANWQAAYGTLGGGYNYDRDQHDVN 679
           S   G+ GT L+ +NL Y + Q  T++  G  G   A ++ AYG L  GY+YDR  H +N
Sbjct: 598 SHQVGLSGTALQDNNLIYSLQQSYTNHGTGAGGHIHAEYKGAYGQLSTGYSYDRHSHQLN 657

Query: 680 WQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYR 739
           + L GG+V H  G+TLSQ LGDT  L++A GA G++I+N  GI TDW GYAV+ Y + YR
Sbjct: 658 YGLQGGIVAHPYGMTLSQHLGDTLALVRADGAQGIKIQNNVGIATDWNGYAVIPYVSSYR 717

Query: 740 YNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSL 799
            NRIALDT+++ +++D++ N  +V+PT+GALV A+F TRIG R LI +     P+PFG++
Sbjct: 718 KNRIALDTHSLADNVDIDVNAQTVIPTRGALVLADFKTRIGHRVLINLYYQENPIPFGAV 777

Query: 800 VR-ENSTGI----TSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQA 854
           V  E    I    +++V  +GQVYL+G P SG L V+WG      C+ +Y LP+++    
Sbjct: 778 VTLEKHHDIDEVNSAIVSHEGQVYLTGLPDSGRLFVKWGYKDIQECVVNYNLPEKTPLSG 837

Query: 855 VTVISAVC 862
           + +I+A C
Sbjct: 838 IYIIAAHC 845



>gb|AAG55426.1|AE005284_4 partial fimbrial usher protein [Escherichia coli O157:H7 EDL933]
 dbj|BAB34447.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
          Length = 653

 Score =  590 bits (1522), Expect = e-166
 Identities = 299/658 (45%), Positives = 434/658 (65%), Gaps = 13/658 (1%)

Query: 212 LRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFRGVRL 271
           +RNN +W+  R +G  +E W N+ +++QRA+IPLK EL +GD  T  D FD V FRGV+L
Sbjct: 1   MRNNSTWS--RSSGQTAE-WKNLSSYLQRAVIPLKGELTVGDDYTAGDFFDSVSFRGVQL 57

Query: 272 YSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTSSNGD 331
            S DNM PDS +GFAP VRGIA++ AQ+TI+QNG+ IYQ+YVSPGAFEI+D++ TSS+GD
Sbjct: 58  ASDDNMLPDSLKGFAPVVRGIAKSNAQITIKQNGYTIYQTYVSPGAFEISDIYSTSSSGD 117

Query: 332 LDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQSSPFFFQGTALGG 391
           L V I E DG+  +Y++P+S+VP+LQR+GR K+ +T   +R+ +++Q    F Q T   G
Sbjct: 118 LLVEIKEADGSVNSYSVPFSSVPLLQRQGRIKYAVTLAKYRTNSNEQQESKFAQATLQWG 177

Query: 392 LPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDSIRFLY 451
            P   T YGG Q +  Y A + GLG NLG++GA+S DVT A+S LAD S H+G S RFLY
Sbjct: 178 GPWGTTWYGGGQYAEYYRAAMFGLGFNLGDFGAISFDVTQAKSTLADQSEHKGQSYRFLY 237

Query: 452 AKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNYHNLRFS 511
           AK++N  GTNFQLMGYRYST GFYTL D  Y+ M+GYE++ DG+  D P+   Y+NL ++
Sbjct: 238 AKTLNQLGTNFQLMGYRYSTSGFYTLSDTMYKHMDGYEFN-DGDDEDTPMWSRYYNLFYT 296

Query: 512 RKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSFSWNES 571
           ++ +LQ+N+SQ L+++GS Y+SG+ Q YW+T   D   Q GY +    +S  +S+++++S
Sbjct: 297 KRGKLQVNISQQLSEYGSFYLSGSQQTYWHTDQQDRLLQFGYNTQIKDLSLGISWNYSKS 356

Query: 572 VGIPDNERIVGLNVSVPFNVLTKR---RYTRENALDRAYASFNANRNSNGQNSWLAGVGG 628
            G PD +++  LN S+P N+L  R    YT +   + A+ + N + ++ G  +   G+  
Sbjct: 357 RGQPDADQVFALNFSLPLNLLLSRSNDSYTSKK--NYAWMTSNTSIDNEGHTTQNLGLTE 414

Query: 629 TLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNY--DRDQHDVNWQLSGG 685
           TLL+  NLSY V QG ++      GSA+ +++  +     GYNY  +  Q  +N+ LSG 
Sbjct: 415 TLLDDGNLSYSVQQGYNSEGKTANGSASMDYKGVFADARVGYNYSDNGSQQQLNYALSGS 474

Query: 686 VVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIAL 745
           +V H  GITL Q LG+TNVLI APGA   R+ N TG+ TDWRGY V+ YAT YR NRIAL
Sbjct: 475 LVAHSQGITLGQSLGETNVLIAAPGAENTRVANSTGLKTDWRGYTVVPYATSYRENRIAL 534

Query: 746 DTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGSLVRENST 805
           D  ++  ++D+E  + +VVPT+GALV A F+   G R L+  ++ G  + FG++   +  
Sbjct: 535 DAASLKRNVDLENAVVNVVPTKGALVLAEFNAHAGARVLMKTSKQGISLRFGAIATLDGV 594

Query: 806 GITS-MVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
              S ++ DDG +Y++G P  G + V+WG+  +  C   Y L +Q +  A+T + A+C
Sbjct: 595 QTNSGIIDDDGSLYMAGLPAKGTITVRWGEAPDQICHISYELTEQQINSAITRMDAIC 652



>ref|ZP_00832976.1| COG3188: P pilus assembly protein, porin PapC [Yersinia intermedia
           ATCC 29909]
          Length = 766

 Score =  578 bits (1491), Expect = e-163
 Identities = 317/788 (40%), Positives = 469/788 (59%), Gaps = 56/788 (7%)

Query: 100 LMPCFNQVLLERIGL---NSSAFPELAQQQNNKCINLLKAVPDATINFDFAAMRLNITIP 156
           L+P      L++IG+   + +AF  L    +   ++L K +P A  NFDF+  RL+I+IP
Sbjct: 9   LVPEITVAELDKIGVKIHDIAAFDRL--NPDAVILDLNKIIPSADTNFDFSQQRLDISIP 66

Query: 157 QIALLSSAHGYIPPEEWDEGIPALLLNYNFTG---NRGNGND-----SYFFSELSGINIG 208
           Q  L       + P  WD+G+PAL  NYN +G    + N +D     S + +  SG+NIG
Sbjct: 67  QAVLDLRPRDMVDPARWDQGLPALFTNYNLSGANTQQKNNDDKTTDNSIYLNLNSGLNIG 126

Query: 209 PWRLRNNGSWNYFRGNGYHSEQ---------WNNIGTWVQRAIIPLKSELVMGDGNTGSD 259
           PWRLRN  ++    G    +E          W NI T++QR I  L++++V+G+  T   
Sbjct: 127 PWRLRNYSTYTDNAGQYATTENTSSPKRERHWQNINTYLQRDIQFLRAQMVLGESATPGY 186

Query: 260 IFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFE 319
           IFD V FRG++L S DNM PDS +GFAP VRGIART AQ+TIRQNG+IIYQSYV+PGAF 
Sbjct: 187 IFDSVQFRGIQLASDDNMLPDSMRGFAPVVRGIARTNAQVTIRQNGYIIYQSYVAPGAFA 246

Query: 320 ITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRSGNSQQS 379
           I DL+PT+++G+LDVTI E DG++  +  P+S V ++QREG+ K+ +T G++R+     S
Sbjct: 247 IHDLYPTANSGNLDVTIREMDGSEHTFVQPFSAVSVMQREGQIKYAITGGEYRTLTKGAS 306

Query: 380 SPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADA 439
           +P F Q  A  GL    TAY GT++S NY++FL G G+  G++G++S D+T A + L D 
Sbjct: 307 TPKFIQSYAAYGLTSSSTAYAGTEISDNYSSFLFGWGQGFGDYGSLSFDITQANTTLKDN 366

Query: 440 SRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDE 499
           S+H+G S R  YAK +   GT F L GYRYST+GF               YD+   +   
Sbjct: 367 SKHDGQSYRMQYAKDVFQSGTTFTLAGYRYSTEGF---------------YDFKEANEIG 411

Query: 500 PIIVNYHNLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVG 559
               N    +++++ ++Q+ ++QSL+ FGS YI+   Q YW+    +  +  GY  +   
Sbjct: 412 LWDTNNQVYQYNKRSKIQIQINQSLDSFGSAYITAYQQDYWHQEGHERTFNAGYNLTLNN 471

Query: 560 ISYSLSFSWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQ 619
           ISY L+++ N  +   D+++ +  +V +P +            L  ++AS+N N + NG 
Sbjct: 472 ISYGLNYT-NTKIKGHDSDQQIAFSVQIPLS----------KWLPNSWASYNVNTSKNGT 520

Query: 620 NSWLAGVGGTLLEGHNLSYHVSQG-DTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDV 678
                G+ GT+L  +NLSY V +       G  G+  A+++ +YG L GGYNY+R+    
Sbjct: 521 TRNQVGIAGTMLANNNLSYSVQESYGNKGEGNGGNINADYKGSYGELRGGYNYNRNSQQE 580

Query: 679 NWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVY 738
           N+ +SGG+V H  G+TLSQPLGDT  L++AP A  V I+NQTG+ TDWRGY ++ Y + Y
Sbjct: 581 NYGVSGGIVVHPYGVTLSQPLGDTFALVRAPKAKDVSIQNQTGVATDWRGYTIVPYVSAY 640

Query: 739 RYNRIALDTNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVTQGGKPVPFGS 798
           R NRIAL+  T  + ID++    SVVPTQGALV A+F+TR+G R L+T+      VPFG+
Sbjct: 641 RENRIALNPETFNDDIDIDTATQSVVPTQGALVLADFNTRVGNRVLMTLHYKNGTVPFGA 700

Query: 799 LV--RENSTGITSMVGDDGQVYLSGAPLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVT 856
           +V  + +   IT +V + G+VYLSG      L V WG    ++CIA+  LP Q   +   
Sbjct: 701 IVSLQSDKNLITGIVDEHGEVYLSGVSDKSVLKVTWG---KNQCIANVTLPTQQTTKKTV 757

Query: 857 V--ISAVC 862
           +  ++++C
Sbjct: 758 IYKLTSIC 765



>ref|NP_459180.1| putativie fimbrial usher [Salmonella typhimurium LT2]
 gb|AAL19139.1| putativie fimbrial usher [Salmonella typhimurium LT2]
          Length = 848

 Score =  578 bits (1490), Expect = e-163
 Identities = 330/875 (37%), Positives = 501/875 (57%), Gaps = 74/875 (8%)

Query: 21  CYSSLAILPSF--LSYAESYFNPAFLLENG----TSVADLSRFERGNHQPAGVYRVDLWR 74
           C   +A+  +F  +++A  YFNPAF+  +G    TSV DLS F+    Q  G Y V +  
Sbjct: 14  CAVCIALGSTFTHVAWARDYFNPAFIENHGQANRTSV-DLSTFDNDKSQLPGTYYVTINI 72

Query: 75  NDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLL 134
           N   IG++++ F+  T + G ++  L  C     L+  G+ +  FP L  ++   C++L 
Sbjct: 73  NKTEIGARNVDFQLATLSDGQQA--LQGCLRLQELKDNGVKTDLFPTLESEKG--CVDL- 127

Query: 135 KAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN 194
             +P A+  FDF    L+++IPQ+ + ++A GY+PPE+W EGI AL+LNY+F+G +  G+
Sbjct: 128 SVIPGASQRFDFQQQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFSGYKEYGS 187

Query: 195 -------DSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKS 247
                  +S + +   G N+GPWR RN  +W+    N   +  WN++  ++QR II LKS
Sbjct: 188 SEDSDDAESKYLALQPGFNLGPWRFRNYSNWS---SNNGENGSWNSVYNYLQRDIIALKS 244

Query: 248 ELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFI 307
           +   GD NT SD+FD V FRG++L S D M P+SQ+G+APT+RGIAR+ AQ+ +RQNG+I
Sbjct: 245 QFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPTIRGIARSNAQVIVRQNGYI 304

Query: 308 IYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLT 367
            YQ+ VSPG FEI D+ PT SNGD DVT+ E DG++Q++ +PYS++PILQR GR K+ +T
Sbjct: 305 AYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVT 364

Query: 368 AGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSAN-YTAFLLGLGRNLGNWGAVS 426
            G +R  N+      F Q T L GLP   T YGG+Q++ + Y +   G+G+N+   GA+S
Sbjct: 365 VGKYRDYNNHALDD-FGQATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLGAIS 423

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LD   + ++  D  +  G S    Y+K + + GT F L GYRY+++ + +L +V      
Sbjct: 424 LDGIWSHAKFDDGRKEIGQSWHVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVI----- 478

Query: 487 GYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTSDS 545
                    + D+    NY      R +R + +V+Q + N  GSL +S   + YW+++  
Sbjct: 479 ---------NPDDDFYDNYG----KRHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQ 525

Query: 546 DTWYQVGYTSSWVGISYSLSFSWNESV---------------GIPDNERIVGLNVSVPFN 590
                  Y +SW  +SY+LS+S+N++                    N+R+  L++ VPF 
Sbjct: 526 MESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFT 585

Query: 591 VLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGY 650
           V             R YAS+  N   +        + GT L   NL++ + Q  ++ +G 
Sbjct: 586 VFD----------SRLYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGD 635

Query: 651 TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPG 710
           +G   A+++  Y  L  GYN   D   V++ +SGG++ HENGITLSQP+    +LIKAPG
Sbjct: 636 SGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPG 695

Query: 711 AGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGAL 770
           A GV +ENQTG+ TD+RGY V+   T Y    I+LD++T  +++D+  N  +V PT+ A+
Sbjct: 696 ASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAV 755

Query: 771 VRANFDTRIGVRALITVTQ-GGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGE 827
           VRA +DT  G R L+T+T+  G+PVPFG+   V      + S+VGD GQV+LSG P  G 
Sbjct: 756 VRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVGDKGQVFLSGLPEEGL 815

Query: 828 LLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           LLV WG   ++ C A Y L        + + +AVC
Sbjct: 816 LLVNWG---SASCRADYRLDISKNMNGIVMANAVC 847



>ref|NP_290363.1| putative fimbrial usher [Escherichia coli O157:H7 EDL933]
 ref|NP_312694.1| putative outer membrane usher protein precursor [Escherichia coli
           O157:H7 str. Sakai]
 gb|AAG58927.1|AE005604_4 putative fimbrial usher [Escherichia coli O157:H7 EDL933]
 dbj|BAB38090.1| putative outer membrane usher protein precursor [Escherichia coli
           O157:H7 str. Sakai]
          Length = 844

 Score =  577 bits (1488), Expect = e-163
 Identities = 323/870 (37%), Positives = 510/870 (58%), Gaps = 68/870 (7%)

Query: 23  SSLAILPSFLSYA-ESYFNPAFL-LENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIG 80
           S + +L S  ++A +S FNP  L L++     D+ +F R N  PAG Y+VD+  N     
Sbjct: 12  SGICLLCSISAFARDSLFNPRLLELDHPADNIDIHQFNRSNTLPAGTYKVDVMINGMLFE 71

Query: 81  SQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCINLLKAVP 138
            Q++ F     +       L PC+  +  +L   G+   A   LA   +  C+N +  + 
Sbjct: 72  RQEVKFAQDNPDAE-----LHPCYVAIKNVLATYGIKVDAIKSLANVDDKTCVNPVPLID 126

Query: 139 DATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTG------NRGN 192
            AT   D + + LNITIPQI L ++ +GYI P  WD+GI A+++NY+F+       N  +
Sbjct: 127 GATWLLDASKLALNITIPQIYLNNAVNGYISPSRWDQGINAMMMNYDFSASHTIRSNYDD 186

Query: 193 GNDSYFFSELSGINIGPWRLRNNGSWNYFRGN-GYHSEQWNNIGTWVQRAIIPLKSELVM 251
            +DSY+ +  +GIN+G WR RN  + N + GN  YHS     +  ++QR I+ L+S++++
Sbjct: 187 DDDSYYLNLRNGINLGAWRFRNYSTLNSYDGNVDYHS-----VSNYIQRDIMALRSQIMI 241

Query: 252 GDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQS 311
           GD  T SD+FD    RGVRLY+ D+M P SQ GFAP V GIA+T A + I+QNG++IYQS
Sbjct: 242 GDTWTASDVFDSTQVRGVRLYTDDDMLPSSQNGFAPVVHGIAKTNATVIIKQNGYVIYQS 301

Query: 312 YVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDF 371
            V  GAF +TDL+ TSS GDLDVTI E DG++Q++  P++++ IL+REG+   DL+ G+ 
Sbjct: 302 AVPQGAFALTDLNTTSSGGDLDVTIKEEDGSEQHFIQPFTSLAILKREGQTDVDLSIGEV 361

Query: 372 RSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTH 431
           R  +    +P   Q  A+ G P   T YGGTQL+ +Y +  LG+G+++G  GA+S DVTH
Sbjct: 362 R--DESGFTPEVLQLQAMHGFPLGITLYGGTQLANDYASAALGIGKDMGALGAISFDVTH 419

Query: 432 ARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYD 491
           ARSQ        G S RFLY+K      T F+L+GYRYS +GFYTL++   R+    ++ 
Sbjct: 420 ARSQFDYDDNESGQSYRFLYSKRFEDTNTTFRLVGYRYSMEGFYTLNEWVSRQDNDSDFW 479

Query: 492 YDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSLN-DFGSLYISGTHQKYWNTSDSDTWYQ 550
             G                +R+ R +   +QS    +G++Y++ + Q+YW T + +   Q
Sbjct: 480 VTG----------------NRRSRFEGTWTQSFTPGWGNIYLTFSRQEYWQTDEVERLLQ 523

Query: 551 VGYTSSWVGISYSLSFSWNESV------GIPDN------ERIVGLNVSVPFNVLTKRRYT 598
            GY ++W  IS+++S+++ +S+         DN      E+I   ++S+P +        
Sbjct: 524 FGYNNNWRNISWNVSWNYTDSIKRSLGNHHDDNNDDFGKEQIFMFSMSIPLSCW------ 577

Query: 599 RENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQG--DTSNNGYTGSATA 656
               ++ +Y +++  +N++ +++   G+ GT+LEG NLSY+V +    + ++ Y+G+A  
Sbjct: 578 ----MEDSYVNYSLTQNNHHESTMQVGLNGTMLEGRNLSYNVQESWMHSPDDSYSGNAGM 633

Query: 657 NWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGGVRI 716
            +   YG++ G Y++ RD    ++   GGV+ H +G+T SQ LG+T  L+KAPGA G+ I
Sbjct: 634 TYDGTYGSVNGSYSWSRDSQHFDYGARGGVLVHSDGVTFSQELGETVALVKAPGAEGLSI 693

Query: 717 ENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGN-SIDVEKNISSVVPTQGALVRANF 775
           EN TGI TDWRGY V    + Y  NR+AL+++     +I++E  + ++VPT+GA+V+A F
Sbjct: 694 ENATGISTDWRGYTVKTQLSPYDENRVALNSDYFSKANIELENTVINLVPTRGAVVKAEF 753

Query: 776 DTRIGVRALITVTQ-GGKPVPFGSLVREN-STG-ITSMVGDDGQVYLSGAPLSGELLVQW 832
            T +G R L  V Q  GKP+ FG++   +  TG +T +VGD+G++YLSG P  GE L+ W
Sbjct: 754 VTHVGYRVLFNVRQVNGKPIMFGAMATASLETGTVTGIVGDNGELYLSGMPEKGEFLLSW 813

Query: 833 GDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           G  A+ +C A Y +  +    ++  + A+C
Sbjct: 814 GQAADEKCKAAYHITHKPDDTSLVQMDAIC 843



>ref|ZP_00720554.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 840

 Score =  576 bits (1484), Expect = e-162
 Identities = 323/873 (36%), Positives = 498/873 (57%), Gaps = 61/873 (6%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLW 73
           T  + G+   +  I    L    S FNPA L  +  S  D+ +F R N  P GVY VD++
Sbjct: 4   TRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDMF 63

Query: 74  RNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCI 131
            N +    QD+ F     +       L  CF  +   L   G+   A           C+
Sbjct: 64  INGKMFERQDVTFVQDNPDAD-----LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCL 118

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR- 190
           +    +  ++  FD   ++LNI+IPQI + + A+ YI P  WDEGI AL +NY+F+G+  
Sbjct: 119 DPAPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHT 178

Query: 191 ------GNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIP 244
                     D+ + +  +G+NIGPWRLRN  + N   G      ++N+I TW+QR I  
Sbjct: 179 LRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRA----EYNSISTWIQRDIAA 234

Query: 245 LKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQN 304
           L+S++++GD  T SDIFD    RG RLY+ ++M P SQ GFAP VRGIA++ A + IRQN
Sbjct: 235 LRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQN 294

Query: 305 GFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKF 364
           G++IYQS V  GAFEITDL+  S+ GDLDVTI E DG++Q +T PY+++ IL+REG+   
Sbjct: 295 GYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDV 354

Query: 365 DLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGA 424
           D++ G+ R  +    +P   Q   L G     T YGG Q + NY +  LG+G++LG  GA
Sbjct: 355 DVSVGELR--DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGA 412

Query: 425 VSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRR 484
           +S DVTHAR+  +      G S RFLY+K  +   T+ +L+GYRYST+G+YTL++ A RR
Sbjct: 413 ISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRR 472

Query: 485 MEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTS 543
               ++   G                +R+ R++  ++QSL  D+G+LY++ + Q+YW+T 
Sbjct: 473 NSPEDFWETG----------------NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTD 516

Query: 544 DSDTWYQVGYTSSWVGISYSLSFSWNESV--GIPDN-------ERIVGLNVSVPFNVLTK 594
           D +   Q GY+SSW  +S+++S+S++ +   G  +N       E+I  L++SVP +    
Sbjct: 517 DVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLS---- 572

Query: 595 RRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYT-GS 653
                      +YA+++ ++N N  +S   G+ GT LE +NLS+++ Q   S++    G+
Sbjct: 573 ------GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN 626

Query: 654 ATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGG 713
            +  +  +YGT+ G YNY ++   +N+ + GG++ H  G+TLSQ LG+T  L+KAPGA G
Sbjct: 627 MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG 686

Query: 714 VRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNS-IDVEKNISSVVPTQGALVR 772
           + I+N  G  TDWRGY V      Y  NR+A+  N    S I+++  + ++VPT+GA+V+
Sbjct: 687 LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK 746

Query: 773 ANFDTRIGVRALITV-TQGGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGELL 829
           A F T +G R L  V    GKPVPFG++  +++ S   + +VGD G++YLSG P  G++ 
Sbjct: 747 AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT 806

Query: 830 VQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + WG+ A+++CI +Y L     +  +      C
Sbjct: 807 LSWGENASTKCIFNYSLSTPESESGLIEQGVTC 839



>ref|ZP_00717436.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           B7A]
 gb|AAL18163.1| LpfC [Escherichia coli]
 gb|AAS99231.1| StgC [Escherichia coli]
 gb|AAY18078.1| LpfC [Escherichia coli]
          Length = 840

 Score =  576 bits (1484), Expect = e-162
 Identities = 323/873 (36%), Positives = 498/873 (57%), Gaps = 61/873 (6%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLW 73
           T  + G+   +  I    L    S FNPA L  +  S  D+ +F R N  P GVY VD++
Sbjct: 4   TRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIF 63

Query: 74  RNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCI 131
            N +    QD+ F     +       L  CF  +   L   G+   A           C+
Sbjct: 64  INGKMFERQDVTFVQDNPDAD-----LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCL 118

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR- 190
           +    +  ++  FD   ++LNI+IPQI + + A+ YI P  WDEGI AL +NY+F+G+  
Sbjct: 119 DPAPRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHT 178

Query: 191 ------GNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIP 244
                     D+ + +  +G+NIGPWRLRN  + N   G      ++N+I TW+QR I  
Sbjct: 179 LRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRA----EYNSISTWIQRDIAA 234

Query: 245 LKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQN 304
           L+S++++GD  T SDIFD    RG RLY+ ++M P SQ GFAP VRGIA++ A + IRQN
Sbjct: 235 LRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQN 294

Query: 305 GFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKF 364
           G++IYQS V  GAFEITDL+  S+ GDLDVTI E DG++Q +T PY+++ IL+REG+   
Sbjct: 295 GYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDV 354

Query: 365 DLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGA 424
           D++ G+ R  +    +P   Q   L G     T YGG Q + NY +  LG+G++LG  GA
Sbjct: 355 DVSVGELR--DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGA 412

Query: 425 VSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRR 484
           +S DVTHAR+  +      G S RFLY+K  +   T+ +L+GYRYST+G+YTL++ A RR
Sbjct: 413 ISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRR 472

Query: 485 MEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTS 543
               ++   G                +R+ R++  ++QSL  D+G+LY++ + Q+YW+T 
Sbjct: 473 NSPEDFWETG----------------NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTD 516

Query: 544 DSDTWYQVGYTSSWVGISYSLSFSWNESV--GIPDN-------ERIVGLNVSVPFNVLTK 594
           D +   Q GY+SSW  +S+++S+S++ +   G  +N       E+I  L++SVP +    
Sbjct: 517 DVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLS---- 572

Query: 595 RRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYT-GS 653
                      +YA+++ ++N N  +S   G+ GT LE +NLS+++ Q   S++    G+
Sbjct: 573 ------GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN 626

Query: 654 ATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGG 713
            +  +  +YGT+ G YNY ++   +N+ + GG++ H  G+TLSQ LG+T  L+KAPGA G
Sbjct: 627 MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG 686

Query: 714 VRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNS-IDVEKNISSVVPTQGALVR 772
           + I+N  G  TDWRGY V      Y  NR+A+  N    S I+++  + ++VPT+GA+V+
Sbjct: 687 LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK 746

Query: 773 ANFDTRIGVRALITV-TQGGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGELL 829
           A F T +G R L  V    GKPVPFG++  +++ S   + +VGD G++YLSG P  G++ 
Sbjct: 747 AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT 806

Query: 830 VQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + WG+ A+++CI +Y L     +  +      C
Sbjct: 807 LSWGENASTKCIFNYSLSTPESESGLIEQGVTC 839



>ref|ZP_00701751.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E24377A]
          Length = 840

 Score =  575 bits (1483), Expect = e-162
 Identities = 323/873 (36%), Positives = 498/873 (57%), Gaps = 61/873 (6%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLW 73
           T  + G+   +  I    L    S FNPA L  +  S  D+ +F R N  P GVY VD++
Sbjct: 4   TRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEIDHQSGVDIRQFNRANLMPPGVYSVDIF 63

Query: 74  RNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCI 131
            N +    QD+ F     +       L  CF  +   L   G+   A           C+
Sbjct: 64  INGKMFERQDVTFVQDNPDAD-----LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCL 118

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR- 190
           +    +  ++  FD   ++LNI+IPQI + + A+ YI P  WDEGI AL +NY+F+G+  
Sbjct: 119 DPALRIEGSSWQFDSDKLQLNISIPQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHT 178

Query: 191 ------GNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIP 244
                     D+ + +  +G+NIGPWRLRN  + N   G      ++N+I TW+QR I  
Sbjct: 179 LRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRA----EYNSISTWIQRDIAA 234

Query: 245 LKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQN 304
           L+S++++GD  T SDIFD    RG RLY+ ++M P SQ GFAP VRGIA++ A + IRQN
Sbjct: 235 LRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQN 294

Query: 305 GFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKF 364
           G++IYQS V  GAFEITDL+  S+ GDLDVTI E DG++Q +T PY+++ IL+REG+   
Sbjct: 295 GYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGQTDV 354

Query: 365 DLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGA 424
           D++ G+ R  +    +P   Q   L G     T YGG Q + NY +  LG+G++LG  GA
Sbjct: 355 DVSVGELR--DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGA 412

Query: 425 VSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRR 484
           +S DVTHAR+  +      G S RFLY+K  +   T+ +L+GYRYST+G+YTL++ A RR
Sbjct: 413 ISFDVTHARANFSHDDTETGQSYRFLYSKRFDDTDTSLRLVGYRYSTEGYYTLNEWASRR 472

Query: 485 MEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTS 543
               ++   G                +R+ R++  ++QSL  D+G+LY++ + Q+YW+T 
Sbjct: 473 NSPEDFWETG----------------NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTD 516

Query: 544 DSDTWYQVGYTSSWVGISYSLSFSWNESV--GIPDN-------ERIVGLNVSVPFNVLTK 594
           D +   Q GY+SSW  +S+++S+S++ +   G  +N       E+I  L++SVP +    
Sbjct: 517 DVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLS---- 572

Query: 595 RRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYT-GS 653
                      +YA+++ ++N N  +S   G+ GT LE +NLS+++ Q   S++    G+
Sbjct: 573 ------GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN 626

Query: 654 ATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGG 713
            +  +  +YGT+ G YNY ++   +N+ + GG++ H  G+TLSQ LG+T  L+KAPGA G
Sbjct: 627 MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG 686

Query: 714 VRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNS-IDVEKNISSVVPTQGALVR 772
           + I+N  G  TDWRGY V      Y  NR+A+  N    S I+++  + ++VPT+GA+V+
Sbjct: 687 LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK 746

Query: 773 ANFDTRIGVRALITV-TQGGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGELL 829
           A F T +G R L  V    GKPVPFG++  +++ S   + +VGD G++YLSG P  G++ 
Sbjct: 747 AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT 806

Query: 830 VQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + WG+ A+++CI +Y L     +  +      C
Sbjct: 807 LSWGENASTKCIFNYSLSTPESESGLIEQGVTC 839



>ref|YP_691095.1| putative long polar fimbriae [Shigella flexneri 5 str. 8401]
 gb|ABF05790.1| putative long polar fimbriae [Shigella flexneri 5 str. 8401]
          Length = 839

 Score =  572 bits (1474), Expect = e-161
 Identities = 323/873 (36%), Positives = 495/873 (56%), Gaps = 61/873 (6%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLW 73
           T  + G+   +  I    L    S FNPA L  N  S  D+ +F R N  P GVY VD++
Sbjct: 3   TRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIF 62

Query: 74  RNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCI 131
            N +    QD+ F     +       L  CF  +   L   G+   A           C+
Sbjct: 63  INGKMFERQDVTFVQDNPDAD-----LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCL 117

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR- 190
           +    +  ++  FD   ++LNI+I QI + + A+ YI P  WDEGI AL +NY+F+G+  
Sbjct: 118 DPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHT 177

Query: 191 ------GNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIP 244
                     D+ + +  +G+NIGPWRLRN  + N   G      ++N+I TW+QR I  
Sbjct: 178 LRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRA----EYNSISTWIQRDIAA 233

Query: 245 LKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQN 304
           L+S++++GD  T SDIFD    RG RLY+ ++M P SQ GFAP VRGIA++ A + IRQN
Sbjct: 234 LRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQN 293

Query: 305 GFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKF 364
           G++IYQS V  GAFEITDL+  S+ GDLDVTI E DG++Q +T PY+ + IL+REG    
Sbjct: 294 GYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYALLAILKREGLTDV 353

Query: 365 DLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGA 424
           D++ G+ R  +    +P   Q   L G     T YGG Q + NY +  LG+G++LG  GA
Sbjct: 354 DVSVGELR--DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGA 411

Query: 425 VSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRR 484
           +S DVTHAR+  +      G S RFLY+K  +   T+ +L+GYRYST+G+YTL++ A RR
Sbjct: 412 ISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRR 471

Query: 485 MEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTS 543
               ++   G                +R+ R++  ++QSL  D+G+LY++ + Q+YW+T 
Sbjct: 472 NSPEDFWETG----------------NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTD 515

Query: 544 DSDTWYQVGYTSSWVGISYSLSFSWNESV--GIPDN-------ERIVGLNVSVPFNVLTK 594
           D +   Q GY+SSW  +S+++S+S++ +   G  +N       E+I  L++SVP +    
Sbjct: 516 DVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLS---- 571

Query: 595 RRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYT-GS 653
                      +YA+++ ++N N  +S   G+ GT LE +NLS+++ Q   S++    G+
Sbjct: 572 ------GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN 625

Query: 654 ATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGG 713
            +  +  +YGT+ G YNY ++   +N+ + GG++ H  G+TLSQ LG+T  L+KAPGA G
Sbjct: 626 MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG 685

Query: 714 VRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNS-IDVEKNISSVVPTQGALVR 772
           + I+N  G  TDWRGY V      Y  NR+A+  N    S I+++  + ++VPT+GA+V+
Sbjct: 686 LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK 745

Query: 773 ANFDTRIGVRALITV-TQGGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGELL 829
           A F T +G R L  V    GKPVPFG++  +++ S   + +VGD G++YLSG P  G++ 
Sbjct: 746 AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT 805

Query: 830 VQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           + WG+ A+++CI +Y L     +  +      C
Sbjct: 806 LSWGENASTKCIFNYSLSTPESESGLIEQGVTC 838



>ref|NP_709462.1| putative long polar fimbriae [Shigella flexneri 2a str. 301]
 ref|NP_839216.1| putative long polar fimbriae [Shigella flexneri 2a str. 2457T]
 gb|AAN45169.1| putative long polar fimbriae [Shigella flexneri 2a str. 301]
 gb|AAP19027.1| putative long polar fimbriae [Shigella flexneri 2a str. 2457T]
          Length = 840

 Score =  572 bits (1473), Expect = e-161
 Identities = 321/855 (37%), Positives = 492/855 (57%), Gaps = 61/855 (7%)

Query: 14  TWCLAGICYSSLAILPSFLSYAESYFNPAFLLENGTSVADLSRFERGNHQPAGVYRVDLW 73
           T  + G+   +  I    L    S FNPA L  N  S  D+ +F R N  P GVY VD++
Sbjct: 4   TRIVVGLTAGTCLIFSQNLMAEVSVFNPALLEINHQSGVDIRQFNRANLMPPGVYSVDIF 63

Query: 74  RNDEFIGSQDIVFESTTENTGDKSGGLMPCFNQV--LLERIGLNSSAFPELAQQQNNKCI 131
            N +    QD+ F     +       L  CF  +   L   G+   A           C+
Sbjct: 64  INGKMFERQDVTFVQDNPDAD-----LHACFIAIKKTLSSFGIKVDALKSFNDVDETVCL 118

Query: 132 NLLKAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNR- 190
           +    +  ++  FD   ++LNI+I QI + + A+ YI P  WDEGI AL +NY+F+G+  
Sbjct: 119 DPAPRIEGSSWQFDSDKLQLNISIHQIYMDAMAYDYISPTRWDEGINALTINYDFSGSHT 178

Query: 191 ------GNGNDSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIP 244
                     D+ + +  +G+NIGPWRLRN  + N   G      ++N+I TW+QR I  
Sbjct: 179 LRSDYGSQETDTSYLNLRNGLNIGPWRLRNYSTLNTSDGRA----EYNSISTWIQRDIAA 234

Query: 245 LKSELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQN 304
           L+S++++GD  T SDIFD    RG RLY+ ++M P SQ GFAP VRGIA++ A + IRQN
Sbjct: 235 LRSQIMIGDTWTASDIFDSTQIRGARLYTDNDMLPASQNGFAPVVRGIAKSNATVIIRQN 294

Query: 305 GFIIYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKF 364
           G++IYQS V  GAFEITDL+  S+ GDLDVTI E DG++Q +T PY+++ IL+REG    
Sbjct: 295 GYVIYQSAVPQGAFEITDLNTASTGGDLDVTIKEEDGSEQRFTQPYASLAILKREGLTDV 354

Query: 365 DLTAGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGA 424
           D++ G+ R  +    +P   Q   L G     T YGG Q + NY +  LG+G++LG  GA
Sbjct: 355 DVSVGELR--DEDGFTPDVLQAQILHGFSHGITLYGGMQAAENYGSAALGVGKDLGALGA 412

Query: 425 VSLDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRR 484
           +S DVTHAR+  +      G S RFLY+K  +   T+ +L+GYRYST+G+YTL++ A RR
Sbjct: 413 ISFDVTHARANFSHDDTETGQSYRFLYSKLFDDTDTSLRLVGYRYSTEGYYTLNEWASRR 472

Query: 485 MEGYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTS 543
               ++   G                +R+ R++  ++QSL  D+G+LY++ + Q+YW+T 
Sbjct: 473 NSPEDFWETG----------------NRRSRVEGTLTQSLGRDYGNLYLTLSRQQYWHTD 516

Query: 544 DSDTWYQVGYTSSWVGISYSLSFSWNESV--GIPDN-------ERIVGLNVSVPFNVLTK 594
           D +   Q GY+SSW  +S+++S+S++ +   G  +N       E+I  L++SVP +    
Sbjct: 517 DVERLMQFGYSSSWKRLSWNVSWSYSNTARQGTGNNHASDNTSEQIYMLSLSVPLS---- 572

Query: 595 RRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGYT-GS 653
                      +YA+++ ++N N  +S   G+ GT LE +NLS+++ Q   S++    G+
Sbjct: 573 ------GWWGNSYATYSVSQNDNSGSSHQLGLSGTALERNNLSWNLMQSYNSHDDEVGGN 626

Query: 654 ATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPGAGG 713
            +  +  +YGT+ G YNY ++   +N+ + GG++ H  G+TLSQ LG+T  L+KAPGA G
Sbjct: 627 MSLTYDGSYGTVNGSYNYSQNSQRLNYGIRGGILAHSEGVTLSQELGETIALVKAPGAAG 686

Query: 714 VRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNS-IDVEKNISSVVPTQGALVR 772
           + I+N  G  TDWRGY V      Y  NR+A+  N    S I+++  + ++VPT+GA+V+
Sbjct: 687 LEIDNMRGAATDWRGYTVKTQLNPYDENRVAISDNYFSKSNIELDNTVVTMVPTRGAVVK 746

Query: 773 ANFDTRIGVRALITV-TQGGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGELL 829
           A F T +G R L  V    GKPVPFG++  +++ S   + +VGD G++YLSG P  G++ 
Sbjct: 747 AEFVTHVGYRVLFRVLNANGKPVPFGAIAAIQDASLADSGIVGDRGELYLSGLPEKGQVT 806

Query: 830 VQWGDGANSRCIAHY 844
           + WG+ A+++CI +Y
Sbjct: 807 LSWGENASTKCIFNY 821



>ref|YP_215162.1| putativie fimbrial usher [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gb|AAX64081.1| putativie fimbrial usher [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
          Length = 847

 Score =  571 bits (1472), Expect = e-161
 Identities = 331/875 (37%), Positives = 499/875 (57%), Gaps = 75/875 (8%)

Query: 21  CYSSLAILPSF--LSYAESYFNPAFLLENG----TSVADLSRFERGNHQPAGVYRVDLWR 74
           C   +A+  +F  +++A  YFNPAF+  +G    TSV DLS F+    Q  G Y V +  
Sbjct: 14  CAVCIALGSTFTRVAWARDYFNPAFIENHGQANRTSV-DLSTFDNDKSQLPGTYYVTINI 72

Query: 75  NDEFIGSQDIVFESTTENTGDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLL 134
           N   IG++++ F+  T + G ++  L  C     L+  G+ +  FP L  ++   C++L 
Sbjct: 73  NKTEIGTRNVDFQLATLSDGQQA--LQGCLRLQELKDNGVKTDLFPTLESEKG--CVDL- 127

Query: 135 KAVPDATINFDFAAMRLNITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGNRGNGN 194
             +  A+  FDF    L+++IPQ+ + ++A GY+PPE+W EGI AL+LNY+F+G +  G+
Sbjct: 128 NVILGASQRFDFQRQALSVSIPQLYIANNARGYVPPEKWQEGITALMLNYSFSGYKEYGS 187

Query: 195 -------DSYFFSELSGINIGPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKS 247
                  +S + +   G N+GPWR RN  +W+    N   S  WN++  ++QR II LKS
Sbjct: 188 SEDSDDAESKYLALQPGFNLGPWRFRNYSNWS---SNNGESGSWNSVYNYLQRDIIALKS 244

Query: 248 ELVMGDGNTGSDIFDGVGFRGVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFI 307
           +   GD NT SD+FD V FRG++L S D M P+SQ+G+APT RGIAR+ AQ+ +RQNG+I
Sbjct: 245 QFTAGDSNTPSDVFDSVPFRGLQLTSDDQMQPNSQRGYAPT-RGIARSNAQVIVRQNGYI 303

Query: 308 IYQSYVSPGAFEITDLHPTSSNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLT 367
            YQ+ VSPG FEI D+ PT SNGD DVT+ E DG++Q++ +PYS++PILQR GR K+ +T
Sbjct: 304 AYQTAVSPGEFEINDMFPTGSNGDYDVTVKEADGSEQHFIVPYSSLPILQRTGRAKYSVT 363

Query: 368 AGDFRSGNSQQSSPFFFQGTALGGLPQEFTAYGGTQLSAN-YTAFLLGLGRNLGNWGAVS 426
            G +R  N+     F  Q T L GLP   T YGG+Q++ + Y +   G+G+N+   GA+S
Sbjct: 364 VGKYRDYNNHTLDDFG-QATLLYGLPWGITLYGGSQIAGDKYQSVAFGVGQNMQMLGAIS 422

Query: 427 LDVTHARSQLADASRHEGDSIRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRME 486
           LD   + ++  D  +  G S R  Y+K + + GT F L GYRY+++ + +L +V      
Sbjct: 423 LDSIWSHAKFDDGRKEIGQSWRVRYSKGVVSTGTTFSLAGYRYASENYNSLSEVI----- 477

Query: 487 GYEYDYDGEHRDEPIIVNYHNLRFSRKDRLQLNVSQSL-NDFGSLYISGTHQKYWNTSDS 545
                      D+    NY      R +R + +V+Q + N  GSL +S   + YW+++  
Sbjct: 478 ---------SPDDDFYDNYGK----RHNRFEASVNQQISNTLGSLTLSWVKEDYWHSAQQ 524

Query: 546 DTWYQVGYTSSWVGISYSLSFSWNESV---------------GIPDNERIVGLNVSVPFN 590
                  Y +SW  +SY+LS+S+N++                    N+R+  L++ VPF 
Sbjct: 525 MESLSASYNNSWGPVSYTLSYSYNKNTYQYRSDNDDDDNDDDRYNQNDRLFTLSLHVPFT 584

Query: 591 VLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGVGGTLLEGHNLSYHVSQGDTSNNGY 650
           V   R           YAS+  N   +        + GT L   NL++ + Q  ++ +G 
Sbjct: 585 VFDSR----------LYASYMLNTRKHDATVNSTTLSGTALRDRNLNWSLQQSHSTQDGD 634

Query: 651 TGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGVVGHENGITLSQPLGDTNVLIKAPG 710
           +G   A+++  Y  L  GYN   D   V++ +SGG++ HENGITLSQP+    +LIKAPG
Sbjct: 635 SGGVNASYKGTYANLNAGYNQSPDSQQVSYGISGGILAHENGITLSQPITGAAILIKAPG 694

Query: 711 AGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALDTNTMGNSIDVEKNISSVVPTQGAL 770
           A GV +ENQTG+ TD+RGY V+   T Y    I+LD++T  +++D+  N  +V PT+ A+
Sbjct: 695 ASGVSVENQTGVATDFRGYTVIPNVTPYYRYDISLDSSTFADNVDIPLNNQTVYPTRNAV 754

Query: 771 VRANFDTRIGVRALITVTQ-GGKPVPFGSL--VRENSTGITSMVGDDGQVYLSGAPLSGE 827
           VRA +DT  G R L+T+T+  G+PVPFG+   V      + S+VGD GQV+LSG P  G 
Sbjct: 755 VRAAYDTHKGYRVLLTLTRSNGEPVPFGATASVDGQDANLASIVGDKGQVFLSGLPEEGL 814

Query: 828 LLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           LLV WG   ++ C A Y L        + + +AVC
Sbjct: 815 LLVNWG---SASCRADYRLDISKNMNGIVMANAVC 846



>ref|ZP_00701219.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E24377A]
 ref|ZP_00723264.1| COG3188: P pilus assembly protein, porin PapC [Escherichia coli
           E110019]
          Length = 838

 Score =  566 bits (1459), Expect = e-159
 Identities = 319/838 (38%), Positives = 469/838 (55%), Gaps = 53/838 (6%)

Query: 36  ESYFNPAFL--LENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENT 93
           E YF+P  L   ++G    DLSRF +   Q  G Y+VD+W N + +  + I F +  E  
Sbjct: 42  EYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQL 101

Query: 94  GDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAV-PDATINFDFAAMRLN 152
                 L P F    L  +G+     P LA++ ++  IN L+ + P     FDF   RLN
Sbjct: 102 ------LQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLN 155

Query: 153 ITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN-----RGNGNDSYFFSELSGINI 207
           ++IPQIAL   A GY+ P  WD+GIP L  NY+FTG+     +GN +   + +  +G N 
Sbjct: 156 LSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF 215

Query: 208 GPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFR 267
           GPWRLRN  +W         +  WN I +++QR I  LKS+L++G+  T   IF    F 
Sbjct: 216 GPWRLRNYSTWT----RNDQASSWNTISSYLQRDIKALKSQLLLGESATSGSIFSSYTFT 271

Query: 268 GVRLYSSDNMYPDSQQGFAPTVRGIARTAAQLTIRQNGFIIYQSYVSPGAFEITDLHPTS 327
           GV+L S DNM P+SQ+GFAPTVRGIA ++A +TIRQNG++IYQS V  GAFEI DL+P+S
Sbjct: 272 GVQLASDDNMLPNSQRGFAPTVRGIANSSAIVTIRQNGYVIYQSNVPAGAFEINDLYPSS 331

Query: 328 SNGDLDVTIDERDGNQQNYTIPYSTVPILQREGRFKFDLTAGDFRS-GNSQQSSPFFFQG 386
           ++GDL+VTI+E DG Q+ +  PYS++P++QR G  K+  TAG +R+  NS    P F + 
Sbjct: 332 NSGDLEVTIEESDGTQRRFIQPYSSLPMMQRPGHLKYSATAGRYRADANSDSKEPEFAEA 391

Query: 387 TALGGLPQEFTAYGGTQLSANYTAFLLGLGRNLGNWGAVSLDVTHARSQLADASRHEGDS 446
           TA+ GL   FT YGG   S +Y A  +G+G  LG  GA+S+D+  A +Q  +     G  
Sbjct: 392 TAIYGLNNTFTLYGGLLGSEDYYALGIGIGGTLGALGALSMDINRADTQFDNRHSFHGYQ 451

Query: 447 IRFLYAKSMNTFGTNFQLMGYRYSTQGFYTLDDVAYRRMEGYEYDYDGEHRDEPIIVNYH 506
            R  Y K +    TN  +  YRY+  G+++ D+   R      +DY+   + E       
Sbjct: 452 WRTQYIKDIPETNTNIAVSYYRYTNDGYFSFDEANTR-----NWDYNSRQKSE------- 499

Query: 507 NLRFSRKDRLQLNVSQSLNDFGSLYISGTHQKYWNTSDSDTWYQVGYTSSWVGISYSLSF 566
                    +Q N+SQ++ D  SLY SG+ Q YW  +D +    VG +    GI YSL++
Sbjct: 500 ---------IQFNISQTIFDGVSLYASGSQQDYWGNNDKNRNISVGVSGQQWGIGYSLNY 550

Query: 567 SWNESVGIPDNERIVGLNVSVPFNVLTKRRYTRENALDRAYASFNANRNSNGQNSWLAGV 626
            ++      +N+R + LN+S+P           E  L R+  S+      +        +
Sbjct: 551 QYSRYTD-QNNDRALSLNLSIPL----------ERWLPRSRVSYQMTSQKDRPTQHEMRL 599

Query: 627 GGTLLEGHNLSYHVSQGDTSNNGYTGSATANWQAAYGTLGGGYNYDRDQHDVNWQLSGGV 686
            G+LL+   LSY + Q    +N +  S  A++++ YGT   GY+Y  D    N+ ++GGV
Sbjct: 600 DGSLLDDGRLSYSLEQSLDDDNNHNSSLNASYRSPYGTFSAGYSYGNDSSQYNYGVTGGV 659

Query: 687 VGHENGITLSQPLGDTNVLIKAPGAGGVRIENQTGILTDWRGYAVMLYATVYRYNRIALD 746
           V H +G+TLSQ LG+   LI A GA GVRI+N  GI TD  GYAV+ Y T Y+ NR+++D
Sbjct: 660 VIHPHGVTLSQYLGNAFALIDANGASGVRIQNYPGIATDPFGYAVVPYLTTYQENRLSVD 719

Query: 747 TNTMGNSIDVEKNISSVVPTQGALVRANFDTRIGVRALITVT-QGGKPVPFGSLVRENST 805
           T  + +++D+E+    VVP +GA+V A F+  IG R L+TV+ + GKP+PFG+L   + T
Sbjct: 720 TTQLPDNVDLEQTTQFVVPNRGAMVAARFNANIGYRVLVTVSDRNGKPLPFGALASNDET 779

Query: 806 GITSMVGDDGQVYLSG-APLSGELLVQWGDGANSRCIAHYVLPKQSLQQAVTVISAVC 862
           G  S+V + G +YLSG +  S    V+WG+ A+ +C   +  P      +V   +A C
Sbjct: 780 GQQSIVDEGGILYLSGISSKSQSWTVRWGNQADQQCQFAFSTPDSEPTTSVLQGTAQC 837



>ref|NP_289717.1| putative outer membrane protein [Escherichia coli O157:H7 EDL933]
 ref|NP_312049.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
 gb|AAG58277.1|AE005543_7 putative outer membrane protein [Escherichia coli O157:H7 EDL933]
 dbj|BAB37445.1| putative outer membrane protein [Escherichia coli O157:H7 str.
           Sakai]
          Length = 838

 Score =  566 bits (1458), Expect = e-159
 Identities = 318/838 (37%), Positives = 469/838 (55%), Gaps = 53/838 (6%)

Query: 36  ESYFNPAFL--LENGTSVADLSRFERGNHQPAGVYRVDLWRNDEFIGSQDIVFESTTENT 93
           E YF+P  L   ++G    DLSRF +   Q  G Y+VD+W N + +  + I F +  E  
Sbjct: 42  EYYFDPIMLETTKSGMQTTDLSRFSKKYAQLPGTYQVDIWLNKKKVSQKKITFTANAEQL 101

Query: 94  GDKSGGLMPCFNQVLLERIGLNSSAFPELAQQQNNKCINLLKAV-PDATINFDFAAMRLN 152
                 L P F    L  +G+     P LA++ ++  IN L+ + P     FDF   RLN
Sbjct: 102 ------LQPQFTVEQLRELGIKVDEIPALAEKDDDSVINSLEQIIPGTAAEFDFNHQRLN 155

Query: 153 ITIPQIALLSSAHGYIPPEEWDEGIPALLLNYNFTGN-----RGNGNDSYFFSELSGINI 207
           ++IPQIAL   A GY+ P  WD+GIP L  NY+FTG+     +GN +   + +  +G N 
Sbjct: 156 LSIPQIALYRDARGYVSPSRWDDGIPTLFTNYSFTGSDNRYRQGNRSQRQYLNMQNGANF 215

Query: 208 GPWRLRNNGSWNYFRGNGYHSEQWNNIGTWVQRAIIPLKSELVMGDGNTGSDIFDGVGFR 267
           GPWRLRN  +W         +  WN I +++QR I  LKS+L++G+  T   IF    F 
Sbjct: 216 GPWRLRNYSTWT----RNDQASSW