BLAST Search Results

Blast performed on February-13-2007
BLASTP 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: nr_env 
           5,549,519 sequences; 1,762,256,069 total letters



Query= EG13445 ymfA 
         (153 letters)

Distribution of 24 Blast Hits on the Query Sequence



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|AP_001748.1|  predicted inner membrane protein [Escheric...   318   7e-86 
ref|ZP_00734072.1|  hypothetical protein Ecol5_01004290 [Esc...   318   7e-86 
ref|YP_669028.1|  probable membrane protein YmfA [Escherichi...   311   5e-84 
ref|NP_753306.1|  Hypothetical protein ymfA [Escherichia col...   310   1e-83 
ref|YP_540263.1|  hypothetical protein YmfA [Escherichia col...   310   2e-83 
ref|ZP_00923547.1|  hypothetical protein Ecol1_01003913 [Esc...   249   3e-65 
ref|ZP_00107985.2|  hypothetical protein Npun02005380 [Nosto...    69   6e-11 
ref|ZP_01245640.1|  hypothetical protein FjohDRAFT_1626 [Fla...    61   2e-08 
ref|ZP_01385038.1|  hypothetical protein CferDRAFT_1902 [Chl...    60   5e-08 
ref|YP_959411.1|  hypothetical protein Maqu_2145 [Marinobact...    53   4e-06 
ref|ZP_01463800.1|  hypothetical protein STIAU_2873 [Stigmat...    52   1e-05 
ref|ZP_01525144.1|  hypothetical protein PmenDRAFT_3727 [Pse...    50   3e-05 
ref|ZP_01611841.1|  hypothetical protein ATW7_03297 [Alterom...    47   4e-04 
ref|ZP_01355827.1|  hypothetical protein RoseRSDRAFT_4218 [R...    45   0.002 
ref|ZP_00505121.1|  hypothetical protein CtheDRAFT_1811 [Clo...    42   0.008 
ref|ZP_01691232.1|  hypothetical protein M23134_03795 [Micro...    42   0.010 
ref|ZP_01533902.1|  hypothetical protein RcasDRAFT_2281 [Ros...    41   0.017 
ref|ZP_01566671.1|  conserved hypothetical protein [Burkhold...    40   0.039 
ref|ZP_00981038.1|  hypothetical protein BcenP_01001731 [Bur...    40   0.039 
ref|YP_622394.1|  hypothetical protein Bcen_2522 [Burkholder...    40   0.039 
ref|ZP_00768458.1|  hypothetical protein CaurDRAFT_2320 [Chl...    40   0.039 
ref|ZP_01515978.1|  hypothetical protein CaggDRAFT_0943 [Chl...    40   0.051 
ref|ZP_01075227.1|  hypothetical protein MED121_13705 [Marin...    40   0.051 
gb|EAK69577.1|  unknown [environmental sequence]                   39   0.086 

>ref|AP_001748.1| predicted inner membrane protein [Escherichia coli W3110]
 ref|NP_415640.2| predicted inner membrane protein [Escherichia coli K12]
 sp|P75962|YMFA_ECOLI Inner membrane protein ymfA
 dbj|BAA35942.2| predicted inner membrane protein [Escherichia coli W3110]
 gb|AAC74206.2| predicted inner membrane protein [Escherichia coli K12]
          Length = 153

 Score =  318 bits (814), Expect = 7e-86
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD
Sbjct: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
Sbjct: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120

Query: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153
           GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP
Sbjct: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153



>ref|ZP_00734072.1| hypothetical protein Ecol5_01004290 [Escherichia coli 53638]
 pir||G64856 probable membrane protein ymfA - Escherichia coli (strain K-12)
          Length = 156

 Score =  318 bits (814), Expect = 7e-86
 Identities = 153/153 (100%), Positives = 153/153 (100%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD
Sbjct: 4   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 63

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
Sbjct: 64  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 123

Query: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153
           GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP
Sbjct: 124 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 156



>ref|YP_669028.1| probable membrane protein YmfA [Escherichia coli 536]
 gb|ABG69127.1| probable membrane protein YmfA [Escherichia coli 536]
          Length = 153

 Score =  311 bits (798), Expect = 5e-84
 Identities = 148/153 (96%), Positives = 152/153 (99%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDS+VFFRIF GIGLVLILISVV+FYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGK+
Sbjct: 1   MSQDSRVFFRIFFGIGLVLILISVVIFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKN 60

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
Sbjct: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120

Query: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153
           GFIGIMGVIFIAVGLLISMPSSKK+RRKRKSRP
Sbjct: 121 GFIGIMGVIFIAVGLLISMPSSKKTRRKRKSRP 153



>ref|NP_753306.1| Hypothetical protein ymfA [Escherichia coli CFT073]
 gb|AAN79866.1|AE016759_140 Hypothetical protein ymfA [Escherichia coli CFT073]
          Length = 167

 Score =  310 bits (795), Expect = 1e-83
 Identities = 147/153 (96%), Positives = 152/153 (99%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDS+VFFRIF GIGLVLILISVV+FYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGK+
Sbjct: 15  MSQDSRVFFRIFFGIGLVLILISVVIFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKN 74

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
Sbjct: 75  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 134

Query: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153
           GFIGIMGVIFI+VGLLISMPSSKK+RRKRKSRP
Sbjct: 135 GFIGIMGVIFISVGLLISMPSSKKTRRKRKSRP 167



>ref|YP_540263.1| hypothetical protein YmfA [Escherichia coli UTI89]
 ref|YP_852220.1| putative inner membrane protein [Escherichia coli APEC O1]
 gb|ABE06732.1| hypothetical protein YmfA [Escherichia coli UTI89]
 gb|ABJ00506.1| putative inner membrane protein [Escherichia coli APEC O1]
          Length = 167

 Score =  310 bits (794), Expect = 2e-83
 Identities = 147/153 (96%), Positives = 151/153 (98%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDS+VFFRIF GIGLVLILISVV+FYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGK+
Sbjct: 15  MSQDSRVFFRIFFGIGLVLILISVVIFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKN 74

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVV FRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW
Sbjct: 75  GSWYPVVVFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 134

Query: 121 GFIGIMGVIFIAVGLLISMPSSKKSRRKRKSRP 153
           GFIGIMGVIFIAVGLLISMPSSKK+RRKRKSRP
Sbjct: 135 GFIGIMGVIFIAVGLLISMPSSKKTRRKRKSRP 167



>ref|ZP_00923547.1| hypothetical protein Ecol1_01003913 [Escherichia coli 101-1]
          Length = 135

 Score =  249 bits (636), Expect = 3e-65
 Identities = 118/121 (97%), Positives = 118/121 (97%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD
Sbjct: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKW 120
           GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNF   
Sbjct: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFLNG 120

Query: 121 G 121
           G
Sbjct: 121 G 121



>ref|ZP_00107985.2| hypothetical protein Npun02005380 [Nostoc punctiforme PCC 73102]
          Length = 152

 Score = 69.3 bits (168), Expect = 6e-11
 Identities = 44/148 (29%), Positives = 79/148 (53%), Gaps = 11/148 (7%)

Query: 1   MSQDSK---VFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRT 57
           M++D+K   +F  IF G+G ++ +  +++  N  ++   AI  +G I+D V  SS   + 
Sbjct: 1   MNEDTKFFRIFGSIFGGVGSIIAVTGIMIALNTRSFITSAIPAQGTIIDLVQRSSTDKKG 60

Query: 58  GKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNF 117
               ++YPV+ F      T +F S+ GS+  E ++G +V + YSP  P  A I + W++ 
Sbjct: 61  RSSYAYYPVIEFTARSGETTVFESNSGSNPPEFTKGQQVEILYSPEKPNSAMIKS-WLSL 119

Query: 118 FKWGFIGIM----GVIFIAVGLLISMPS 141
           +   F+ +M    G IF  VG ++ + S
Sbjct: 120 W---FLPVMLTGLGSIFALVGGVVLIKS 144



>ref|ZP_01245640.1| hypothetical protein FjohDRAFT_1626 [Flavobacterium johnsoniae
           UW101]
 gb|EAS59280.1| hypothetical protein FjohDRAFT_1626 [Flavobacterium johnsoniae
           UW101]
          Length = 232

 Score = 60.8 bits (146), Expect = 2e-08
 Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 5/139 (3%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFR 70
           +F   GLVL++ +V ++ ++  + K A   +G +V+ V       R+     + PVV+F 
Sbjct: 10  LFTAAGLVLLVGTVYLYLDKQAFIKKAEVVQGDVVELV-----RERSNNSIMYAPVVSFI 64

Query: 71  PTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIF 130
                 +   SS+ S+    + G+ V + Y+P  P KA IN+    +     +GI G+IF
Sbjct: 65  TKEGSKIEITSSVSSNPPSYNVGETVEIMYNPKEPNKANINSFESLWLGVLVMGIFGIIF 124

Query: 131 IAVGLLISMPSSKKSRRKR 149
             VG LI +   KK R+K+
Sbjct: 125 FLVGFLIILYGIKKQRKKQ 143



>ref|ZP_01385038.1| hypothetical protein CferDRAFT_1902 [Chlorobium ferrooxidans DSM
           13031]
 gb|EAT59895.1| hypothetical protein CferDRAFT_1902 [Chlorobium ferrooxidans DSM
           13031]
          Length = 238

 Score = 59.7 bits (143), Expect = 5e-08
 Identities = 42/143 (29%), Positives = 68/143 (47%), Gaps = 1/143 (0%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWY-PVVAF 69
           +F   G+ ++L +  +  N  T+   A+ TEG +V  +   S S     D   Y PV+ F
Sbjct: 10  LFTAFGIAMLLGTFWISENTRTFLSKAVTTEGTVVRLIESWSGSSNISHDSKIYRPVIRF 69

Query: 70  RPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVI 129
                   +F SS GS+    SEG+KV + Y P  P+KA+IN+ +  +     +G +G +
Sbjct: 70  TDGNGSPQVFISSSGSNPPAYSEGEKVELIYLPDDPQKAQINDLFSLWAGSIILGGLGGV 129

Query: 130 FIAVGLLISMPSSKKSRRKRKSR 152
           F+  G  I +    K R+    R
Sbjct: 130 FLLAGAGIFLVPILKGRKNDSLR 152



>ref|YP_959411.1| hypothetical protein Maqu_2145 [Marinobacter aquaeolei VT8]
 gb|ABM19224.1| hypothetical protein Maqu_2145 [Marinobacter aquaeolei VT8]
          Length = 204

 Score = 53.1 bits (126), Expect = 4e-06
 Identities = 37/113 (32%), Positives = 55/113 (48%), Gaps = 11/113 (9%)

Query: 37  AIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKV 96
           A    G ++D         R+    ++YPVV F       + F S  GS+    S G++V
Sbjct: 8   ATEATGTVIDL-----ERSRSSDSTTYYPVVVFEDIRGREIEFRSRSGSNPPSFSRGERV 62

Query: 97  NVYYSPGHPEKAEINNPWVNFFKWG---FIGIMGVIFIAVGLLISMPSSKKSR 146
           +V+Y P  PE A IN+    F  WG    +G MG++F A+G  + +   KKSR
Sbjct: 63  SVFYEPSTPESARINS---FFSLWGLPMILGGMGLVFGAIGGGMLLFGWKKSR 112



>ref|ZP_01463800.1| hypothetical protein STIAU_2873 [Stigmatella aurantiaca DW4/3-1]
 gb|EAU65439.1| hypothetical protein STIAU_2873 [Stigmatella aurantiaca DW4/3-1]
          Length = 133

 Score = 51.6 bits (122), Expect = 1e-05
 Identities = 35/127 (27%), Positives = 62/127 (48%), Gaps = 7/127 (5%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFR 70
           IFL  G+ + +I +V       +   A  T+  +V      +HS R  +  ++YPV+ + 
Sbjct: 4   IFLAAGIAMGVICLVTLARTRRFLSQAHETQAEVV-----GNHSRRHNRKNTYYPVLRYL 58

Query: 71  PTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFI-GIMGVI 129
                     S +GS+     EGD+V + Y+P +P+   I+N ++N +    + G MG  
Sbjct: 59  TQEGAQHEVVSPVGSNPPRYREGDRVPLLYNPANPQDVRIHN-FLNLWLLPLLFGFMGAA 117

Query: 130 FIAVGLL 136
           F+ VG+L
Sbjct: 118 FLLVGVL 124



>ref|ZP_01525144.1| hypothetical protein PmenDRAFT_3727 [Pseudomonas mendocina ymp]
 gb|EAV23452.1| hypothetical protein PmenDRAFT_3727 [Pseudomonas mendocina ymp]
          Length = 222

 Score = 50.4 bits (119), Expect = 3e-05
 Identities = 37/142 (26%), Positives = 69/142 (48%), Gaps = 17/142 (11%)

Query: 15  IGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPD 74
           +G  L+ I++V+  +++   +  + T G +V  +            G   P+V F P P 
Sbjct: 12  VGAFLVAIALVLQIHRWNEEERMLRTTGSVVAVM------------GRGCPLVEFFPLPG 59

Query: 75  YTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVIFIAVG 134
             + F   + S     ++GD V ++Y P  P+ A I++   N+F    +G +G+ F  VG
Sbjct: 60  ERVTFTGEVCSR-PGYAKGDIVELFYDPLEPQNAHIDSFLQNWFVSLILGGIGLFFTLVG 118

Query: 135 LLISMPSS----KKSRRKRKSR 152
           L + MP +    +++R KRK +
Sbjct: 119 LALLMPEALVDGRRNRLKRKGQ 140



>ref|ZP_01611841.1| hypothetical protein ATW7_03297 [Alteromonadales bacterium TW-7]
 gb|EAW29111.1| hypothetical protein ATW7_03297 [Alteromonadales bacterium TW-7]
          Length = 106

 Score = 46.6 bits (109), Expect = 4e-04
 Identities = 31/112 (27%), Positives = 57/112 (50%), Gaps = 10/112 (8%)

Query: 1   MSQDSKVFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKD 60
           M+   KV + ++L +G++ +++ + V  N   +++ AI+T+G +   V           D
Sbjct: 1   MNNSLKVSY-LYLLLGVLAVIVGIFVTTNTIEFTQQAINTKGKVSSLVVI---------D 50

Query: 61  GSWYPVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINN 112
              YP VAF  + + T  F S+ G       +G+ VNV Y P  P +A++N+
Sbjct: 51  TKIYPEVAFSSSSNETHKFISNSGCKPACYKKGESVNVLYLPNQPNQAQLNS 102



>ref|ZP_01355827.1| hypothetical protein RoseRSDRAFT_4218 [Roseiflexus sp. RS-1]
 gb|EAT29023.1| hypothetical protein RoseRSDRAFT_4218 [Roseiflexus sp. RS-1]
          Length = 171

 Score = 44.7 bits (104), Expect = 0.002
 Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 6/128 (4%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDA--IHTEGVIVDTVWHSSHSHRTGKDGSWYPVVA 68
           I L IGL ++ + +   +  FT ++ A  + +EG +V+ +  +  S    K   +YPVV 
Sbjct: 19  IMLVIGLGILFLGLQ--WRTFTQNQIAAMLTSEGRVVEVISRTKTSGGERKT-YFYPVVE 75

Query: 69  FRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGV 128
           FR     ++ F  S GS+      GD V V Y P  P+ A I++ W  +   G +  +G 
Sbjct: 76  FRTADGESVRFEGSTGSNPSSYRVGDTVRVRYDPQTPQSALIDS-WELWLPSGIVIGVGG 134

Query: 129 IFIAVGLL 136
            F  +G+L
Sbjct: 135 FFALMGIL 142



>ref|ZP_00505121.1| hypothetical protein CtheDRAFT_1811 [Clostridium thermocellum ATCC
           27405]
 gb|EAM45878.1| hypothetical protein CtheDRAFT_1811 [Clostridium thermocellum ATCC
           27405]
          Length = 233

 Score = 42.4 bits (98), Expect = 0.008
 Identities = 38/147 (25%), Positives = 59/147 (40%), Gaps = 25/147 (17%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPVVAFR 70
           +F   GL+ ILI V  F + + +  +A  T  V+ D       S+R       Y VV   
Sbjct: 12  VFTAAGLIPILIGVTFFLSHYNFISNAARTTAVVTDI-----KSYRDFDGDKHYEVV--- 63

Query: 71  PTPDYTLIFNSSIGSDFYEDSE-------GDKVNVYYSPGHPEKAEINNPWVNFFKWGFI 123
                  I  S  G ++YE          G K+ VYY P  P    +      F     +
Sbjct: 64  -------IKYSVEGEEYYEIIAHSPLMYVGRKITVYYDPNKPR--HVKTMGFVFDDLFLV 114

Query: 124 GIMGVIFIAVGLLISMPSSKKSRRKRK 150
           GI G++F  +G+  +    KK R +++
Sbjct: 115 GI-GLVFFIIGISFTASQFKKFRLRKR 140



>ref|ZP_01691232.1| hypothetical protein M23134_03795 [Microscilla marina ATCC 23134]
 gb|EAY27726.1| hypothetical protein M23134_03795 [Microscilla marina ATCC 23134]
          Length = 134

 Score = 42.0 bits (97), Expect = 0.010
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%)

Query: 64  YPVVAFRPTPDYTLIFNSS--IGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWG 121
           +P V F    D  + F S   +  D +    G +V+V Y   +P  A I+  W N     
Sbjct: 45  FPFVKFTTKKDEEIRFRSKLEVNVDLFNYKIGQEVDVIYHKYNPHNARIDKFWENNMAEL 104

Query: 122 FIGIMGVIFIAVGLLISMPSSKKSRRKRK 150
           ++ ++GVI + VGL++     +K RR+ +
Sbjct: 105 YLTLLGVIIMFVGLMVRWFFIRKVRRQAR 133



>ref|ZP_01533902.1| hypothetical protein RcasDRAFT_2281 [Roseiflexus castenholzii DSM
           13941]
 gb|EAV24409.1| hypothetical protein RcasDRAFT_2281 [Roseiflexus castenholzii DSM
           13941]
          Length = 232

 Score = 41.2 bits (95), Expect = 0.017
 Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 13/130 (10%)

Query: 14  GIGLVLILISVVVFY-------NQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSW--Y 64
           GIG++   I +   Y       +Q       +  +G +V+ V   S +   G+  S   Y
Sbjct: 76  GIGIIAAAIGLGALYGGQMWRVHQQNQIATMVKAQGAVVEVV---SRTRTQGEKRSTLHY 132

Query: 65  PVVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIG 124
            VV FR     T+ F  ++GS+      GD V V Y P  P+ A I++ W+ +     + 
Sbjct: 133 AVVEFRTANGETIRFEDTMGSNPPAYRVGDAVEVLYDPQTPQSAMIDSWWI-WMPSTIVM 191

Query: 125 IMGVIFIAVG 134
           ++G  F  +G
Sbjct: 192 VVGGSFAVIG 201



>ref|ZP_01566671.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
 gb|EAV55164.1| conserved hypothetical protein [Burkholderia cenocepacia MC0-3]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 66  VVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGI 125
           VVAF       + F     S      EGD VNV Y P  PE+A ++  W    +WG   I
Sbjct: 262 VVAFTTDSGRLITFAQGSASSHPGLHEGDAVNVLYDPVTPERALVDRFW---DRWGLAAI 318

Query: 126 M---GVIFIAVGLLIS 138
           +   G  F+A GL ++
Sbjct: 319 LFAIGAPFLAAGLFVA 334



>ref|ZP_00981038.1| hypothetical protein BcenP_01001731 [Burkholderia cenocepacia
           PC184]
          Length = 301

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 66  VVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGI 125
           VVAF       + F     S      EGD VNV Y P  PE+A ++  W    +WG   I
Sbjct: 215 VVAFTTDSGRLITFAQGSASSHPGLHEGDAVNVLYDPVTPERALVDRFW---DRWGLAAI 271

Query: 126 M---GVIFIAVGLLIS 138
           +   G  F+A GL ++
Sbjct: 272 LFAIGAPFLAAGLFVA 287



>ref|YP_622394.1| hypothetical protein Bcen_2522 [Burkholderia cenocepacia AU 1054]
 ref|YP_836776.1| hypothetical protein Bcen2424_3135 [Burkholderia cenocepacia
           HI2424]
 gb|ABF77421.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
 gb|ABK09883.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
          Length = 348

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 66  VVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGI 125
           VVAF       + F     S      EGD VNV Y P  PE+A ++  W    +WG   I
Sbjct: 262 VVAFTTDSGRLITFAQGSASSHPGLHEGDAVNVLYDPVTPERALVDRFW---DRWGLTAI 318

Query: 126 M---GVIFIAVGLLIS 138
           +   G  F+A GL ++
Sbjct: 319 LFAIGAPFLAAGLFVA 334



>ref|ZP_00768458.1| hypothetical protein CaurDRAFT_2320 [Chloroflexus aurantiacus
           J-10-fl]
 gb|EAO58415.1| hypothetical protein CaurDRAFT_2320 [Chloroflexus aurantiacus
           J-10-fl]
          Length = 164

 Score = 40.0 bits (92), Expect = 0.039
 Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 14/129 (10%)

Query: 7   VFFRIFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTVWHSSHSHRTGKDGSWYPV 66
           +F  IF+G+GL         F   +      +   GV+VD     S    TG    +  V
Sbjct: 17  IFGAIFVGVGL---------FARDWMVPSSHLSASGVVVDLDEVRSSRGSTG----YKAV 63

Query: 67  VAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIM 126
           V F  +    + F     S+      G +V V Y P +PE A I++P+       FIG  
Sbjct: 64  VEFTTSTGQVVRFQDPTSSNPPAYRRGQEVTVLYDPENPEFAVIDSPFTWLPSTVFIG-F 122

Query: 127 GVIFIAVGL 135
           G +F+ +G+
Sbjct: 123 GGLFVVLGI 131



>ref|ZP_01515978.1| hypothetical protein CaggDRAFT_0943 [Chloroflexus aggregans DSM
           9485]
 gb|EAV10353.1| hypothetical protein CaggDRAFT_0943 [Chloroflexus aggregans DSM
           9485]
          Length = 130

 Score = 39.7 bits (91), Expect = 0.051
 Identities = 27/96 (28%), Positives = 46/96 (47%), Gaps = 7/96 (7%)

Query: 18  VLILISVVVFYNQFTYSKDAIHTE-GVIVDTVWHSSHSHRTGKDGSWYPVVAFRPTPDYT 76
           VL L  +V  +   T  +  +    G++V  V +       G+   +YP+V F+     T
Sbjct: 39  VLALAMLVALWRMHTTMRAGMAAAAGIVVGAVQYDD-----GEINLFYPMVEFQTAAGET 93

Query: 77  LIFNSSIGSDFYEDSE-GDKVNVYYSPGHPEKAEIN 111
           + F  +IG+ F    + G++V VYY+P  P  A I+
Sbjct: 94  IRFRGNIGTAFVPPYKVGNRVKVYYNPAQPRSAIID 129



>ref|ZP_01075227.1| hypothetical protein MED121_13705 [Marinomonas sp. MED121]
 gb|EAQ66987.1| hypothetical protein MED121_13705 [Marinomonas sp. MED121]
          Length = 241

 Score = 39.7 bits (91), Expect = 0.051
 Identities = 34/143 (23%), Positives = 61/143 (42%), Gaps = 4/143 (2%)

Query: 11  IFLGIGLVLILISVVVFYNQFTYSKDAIHTEGVIVDTV-WHSSHSHRTGKDGSWYPVVAF 69
           I L +GL L+ I+ + +Y      +D++ T G ++  + +  S  ++TGK   +   V F
Sbjct: 10  ILLTLGLFLLFIASIFYYQSQHPFQDSLETTGTVMKIINFDDSGFNQTGKTSLF---VNF 66

Query: 70  RPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGIMGVI 129
           +   +  + F   I  D      G+K+ + YS   P KA I        K      +G +
Sbjct: 67  KTLTNQLIEFRLQIHQDSNYYQVGEKIALIYSTSMPSKAIIKPTPSLASKVSIWANLGCL 126

Query: 130 FIAVGLLISMPSSKKSRRKRKSR 152
            I   + I +   K+  + R  R
Sbjct: 127 LILAFIAIHLKDFKQQHKIRYLR 149



>gb|EAK69577.1| unknown [environmental sequence]
          Length = 141

 Score = 38.9 bits (89), Expect = 0.086
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 6/76 (7%)

Query: 66  VVAFRPTPDYTLIFNSSIGSDFYEDSEGDKVNVYYSPGHPEKAEINNPWVNFFKWGFIGI 125
           +VAF       + F     S      EG+ VNV Y P  PE+A ++  W    +WG   I
Sbjct: 55  IVAFTTDSGRQITFAQGAASSHPGLREGEAVNVLYDPVTPERAVVDRFW---DRWGLTAI 111

Query: 126 M---GVIFIAVGLLIS 138
           +   G  F+A GL ++
Sbjct: 112 LLAIGAPFLAAGLFVA 127




  Database: nr_env
    Posted date:  Feb 10, 2007 10:14 PM
  Number of letters in database: 997,052,372
  Number of sequences in database:  2,947,546
  
  Database: /data/DB/nr_env.01
    Posted date:  Feb 10, 2007 10:24 PM
  Number of letters in database: 765,203,697
  Number of sequences in database:  2,601,973
  
Lambda     K      H
   0.323    0.140    0.437 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 574,291,421
Number of Sequences: 5549519
Number of extensions: 24897068
Number of successful extensions: 61903
Number of sequences better than 1.0e-01: 24
Number of HSP's better than  0.1 without gapping: 10
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 61886
Number of HSP's gapped (non-prelim): 27
length of query: 153
length of database: 1,762,256,069
effective HSP length: 114
effective length of query: 39
effective length of database: 1,129,610,903
effective search space: 44054825217
effective search space used: 44054825217
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 89 (38.9 bits)