Score E
Sequences producing significant alignments: (bits) Value
ref|AP_000911.1| hypothetical protein [Escherichia coli W31... 741 0.0
sp|Q47688|YKFC_ECOLI Hypothetical protein ykfC >gi|1552826|... 733 0.0
gb|ABG56818.1| putative truncated reverse transcriptase [Kl... 727 0.0
ref|NP_708749.1| reverse transcriptase-like protein [Shigel... 727 0.0
ref|ZP_00702246.1| COG3344: Retron-type reverse transcripta... 727 0.0
ref|ZP_00720744.1| COG3344: Retron-type reverse transcripta... 727 0.0
ref|NP_053121.1| hypothetical protein pB171_059 [Escherichi... 726 0.0
ref|ZP_00700969.1| COG3344: Retron-type reverse transcripta... 725 0.0
ref|ZP_00712213.1| COG3344: Retron-type reverse transcripta... 725 0.0
gb|AAB86996.1| reverse transcriptase-like protein [Shigella... 722 0.0
dbj|BAA22287.1| Reverse transcriptase like protein [Escheri... 627 e-178
dbj|BAA22286.1| Reverse transcriptase like protein [Escheri... 622 e-176
ref|NP_838466.1| reverse transcriptase-like protein [Shigel... 418 e-115
ref|NP_838465.1| reverse transcriptase-like protein [Shigel... 281 4e-74
ref|NP_395421.1| reverse transcriptase [Yersinia pestis CO9... 269 2e-70
ref|NP_857704.1| reverse transcriptase-like protein [Yersin... 260 8e-68
ref|YP_708542.1| RNA-directed DNA polymerase [Rhodococcus s... 213 2e-53
ref|ZP_01429758.1| RNA-directed DNA polymerase [Salinispora... 211 4e-53
ref|ZP_01424882.1| RNA-directed DNA polymerase [Herpetosiph... 207 6e-52
ref|ZP_00874799.1| RNA-directed DNA polymerase [Streptococc... 202 2e-50
ref|ZP_01171048.1| putative maturase/reverse transcriptase ... 199 2e-49
ref|NP_436278.1| Putative reverse transcriptase [Sinorhizob... 196 2e-48
emb|CAA38781.1| reverse transcriptase homologue COI iA grp ... 195 3e-48
ref|YP_865894.1| RNA-directed DNA polymerase (Reverse trans... 191 4e-47
emb|CAB61571.1| cox1I1a maturase [Schizosaccharomyces pombe] 190 1e-46
gb|AAS83509.1| MatR [Bacteroides fragilis] 190 1e-46
ref|ZP_01371125.1| RNA-directed DNA polymerase (Reverse tra... 190 1e-46
ref|NP_049088.1| groupII intron-associated maturase [Novosp... 189 2e-46
ref|NP_811515.1| putative maturase/reverse transcriptase [B... 188 5e-46
ref|ZP_01290170.1| RNA-directed DNA polymerase (Reverse tra... 186 2e-45
ref|YP_245692.1| RNA-directed DNA polymerase [Bacillus cere... 186 2e-45
ref|ZP_01046790.1| Putative reverse transcriptase [Nitrobac... 186 2e-45
ref|NP_150408.1| hypothetical protein PylioMp37 [Pylaiella ... 186 2e-45
ref|NP_832403.1| RNA-directed DNA polymerase [Bacillus cere... 185 4e-45
ref|YP_516283.1| hypothetical protein DSY0050 [Desulfitobac... 185 4e-45
ref|YP_847308.1| RNA-directed DNA polymerase (Reverse trans... 185 4e-45
ref|ZP_01550020.1| reverse transcriptase-like protein [Stap... 184 5e-45
ref|ZP_00741363.1| Reverse transcriptase / RNA maturase / ... 184 7e-45
ref|NP_982082.1| reverse transcriptase/endonuclease protein... 184 9e-45
ref|YP_603203.1| Reverse transcriptase / RNA maturase / End... 182 3e-44
ref|YP_520787.1| hypothetical protein DSY4554 [Desulfitobac... 182 3e-44
ref|NP_862610.1| maturase MatR [Lactococcus lactis subsp. l... 181 5e-44
ref|NP_687596.1| prophage LambdaSa1, reverse transcriptase/... 180 1e-43
ref|ZP_00784000.1| prophage LambdaSa1, reverse transcriptas... 180 1e-43
dbj|GAA02477.1| unnamed protein product [Pelotomaculum ther... 179 2e-43
ref|YP_809603.1| Retron-type reverse transcriptase [Lactoco... 179 2e-43
ref|YP_066243.1| similar to reverse transcriptase/maturase ... 179 2e-43
sp|P0A3U0|LTRA_LACLA Group II intron-encoded protein ltrA [... 179 2e-43
ref|ZP_01362792.1| RNA-directed DNA polymerase (Reverse tra... 179 3e-43
gb|AAF27656.1|AF218567_1 putative maturase [Cryphonectria p... 178 5e-43
gb|AAA32006.2| cytochrome c oxidase subunit I [Podospora an... 177 9e-43
ref|YP_796487.1| maturase MatR [Lactococcus lactis subsp. c... 177 9e-43
ref|NP_952009.1| group II intron, maturase [Geobacter sulfu... 177 1e-42
ref|NP_950594.1| retron-type reverse transcriptase [Onion y... 177 1e-42
ref|YP_066859.1| probable reverse transcriptase/maturase fa... 176 1e-42
ref|ZP_01426581.1| RNA-directed DNA polymerase [Herpetosiph... 175 3e-42
ref|ZP_01621214.1| hypothetical protein L8106_27147 [Lyngby... 174 7e-42
ref|YP_717176.1| hypothetical protein MapooMp73 [Marchantia... 174 7e-42
emb|CAA38778.1| reverse transcriptase homologue COI ialpha ... 174 7e-42
ref|NP_074925.1| orf787 [Podospora anserina] 174 7e-42
ref|NP_799494.1| putative reverse transcriptase [Bacillus m... 174 7e-42
gb|AAC09431.1| coxII intron2 ORF [Marchantia polymorpha] 174 7e-42
ref|ZP_01247610.1| RNA-directed DNA polymerase [Flavobacter... 173 1e-41
ref|YP_520785.1| hypothetical protein DSY4552 [Desulfitobac... 173 1e-41
dbj|GAA00503.1| unnamed protein product [Pelotomaculum ther... 172 2e-41
ref|NP_054460.1| hypothetical protein MapooMp68 [Marchantia... 172 3e-41
gb|EAJ69265.1| unknown [environmental sequence] 172 4e-41
ref|YP_517917.1| hypothetical protein DSY1684 [Desulfitobac... 172 4e-41
ref|ZP_01143676.1| group II intron-encoding maturase [Geoba... 172 4e-41
ref|ZP_01140758.1| similar to Retron-type reverse transcrip... 172 4e-41
ref|YP_433141.1| group II intron-encoding maturase [Hahella... 171 5e-41
ref|YP_132479.1| hypothetical maturase [Photobacterium prof... 171 5e-41
ref|YP_431437.1| group II intron-encoding maturase [Hahella... 171 6e-41
ref|NP_842108.1| Maturase; integron/retron-type RNA-directe... 171 8e-41
ref|ZP_01139713.1| similar to Retron-type reverse transcrip... 171 8e-41
ref|ZP_01109209.1| hypothetical maturase [Alteromonas macle... 171 8e-41
ref|ZP_01139703.1| similar to Retron-type reverse transcrip... 170 1e-40
ref|ZP_01368733.1| RNA-directed DNA polymerase (Reverse tra... 170 1e-40
ref|ZP_00427901.1| RNA-directed DNA polymerase (Reverse tra... 170 1e-40
ref|NP_811530.1| reverse transcriptase [Bacteroides thetaio... 170 1e-40
ref|YP_753720.1| hypothetical protein Swol_1035 [Syntrophom... 170 1e-40
ref|ZP_01464265.1| prophage LambdaSa1, reverse transcriptas... 169 2e-40
gb|ABK00737.1| reverse transcriptase [Bacillus cereus] 169 2e-40
ref|NP_982096.1| reverse transcriptase [Bacillus cereus ATC... 169 2e-40
ref|YP_520807.1| hypothetical protein DSY4574 [Desulfitobac... 169 2e-40
ref|YP_074573.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_074709.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_075809.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_074723.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_074813.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_076561.1| group II intron-encoding maturase [Symbiob... 169 2e-40
ref|YP_075623.1| group II intron-encoding maturase [Symbiob... 168 4e-40
ref|YP_357678.1| prophage LambdaSa1, reverse transcriptase/... 168 5e-40
gb|ABD24341.1| putative reverse transcriptase [Bacillus thu... 168 5e-40
ref|ZP_01175840.1| COG3344: Retron-type reverse transcripta... 168 5e-40
ref|ZP_01610016.1| RNA-directed DNA polymerase [Sphingomona... 167 7e-40
ref|ZP_01388905.1| RNA-directed DNA polymerase [Geobacter s... 167 7e-40
gb|AAT72329.1| reverse transcriptase/maturase [Geobacillus ... 167 7e-40
ref|ZP_01112144.1| hypothetical maturase [Alteromonas macle... 167 9e-40
ref|ZP_01110659.1| hypothetical maturase [Alteromonas macle... 167 9e-40
gb|EAJ92722.1| unknown [environmental sequence] 167 1e-39
ref|YP_986460.1| RNA-directed DNA polymerase [Acidovorax sp... 167 1e-39
gb|AAK11468.1|AF323437_1 putative maturase/reverse transcri... 166 2e-39
ref|YP_073849.1| group II intron-encoding maturase [Symbiob... 166 2e-39
gb|AAB95256.1| RT-like protein [Venturia inaequalis] 166 2e-39
gb|EAE52243.1| unknown [environmental sequence] 166 3e-39
emb|CAJ70937.1| strong similarity to group II intron-encode... 166 3e-39
emb|CAJ74383.1| similar to Group II intron encoded reverse ... 166 3e-39
emb|CAJ73615.1| conserved hypothetical protein [Candidatus ... 166 3e-39
emb|CAJ73647.1| similar to Group II intron encoded reverse ... 166 3e-39
emb|CAJ74420.1| similar to reverse transcriptase [Candidatu... 166 3e-39
ref|ZP_01371126.1| RNA-directed DNA polymerase (Reverse tra... 165 3e-39
ref|ZP_00570947.1| RNA-directed DNA polymerase [Frankia sp.... 165 3e-39
gb|EAK61704.1| unknown [environmental sequence] 165 4e-39
ref|YP_095114.1| reverse transcriptase [Legionella pneumoph... 165 4e-39
ref|YP_076555.1| group II intron-encoding maturase, N-termi... 164 1e-38
ref|NP_052703.1| hypothetical protein pxo1_07 [Bacillus ant... 164 1e-38
gb|EAJ30773.1| unknown [environmental sequence] 163 1e-38
ref|NP_043734.1| hypothetical protein AlmafMp15 [Allomyces ... 163 1e-38
ref|YP_075380.1| group II intron-encoding maturase [Symbiob... 163 1e-38
ref|YP_075584.1| group II intron-encoding maturase variant ... 162 4e-38
ref|NP_049098.1| GroupII intron-associated maturase [Novosp... 161 5e-38
gb|EAG36726.1| unknown [environmental sequence] 161 6e-38
gb|AAU82324.1| prophage LambdaSa1 transcriptase/maturase fa... 161 6e-38
gb|EAF43659.1| unknown [environmental sequence] 160 1e-37
ref|YP_356754.1| maturase-related protein [Pelobacter carbi... 160 1e-37
ref|YP_356267.1| group II intron-encoding maturase [Pelobac... 160 1e-37
gb|EAH60891.1| unknown [environmental sequence] 159 2e-37
gb|AAU43691.1| reverse transcriptase/maturase [uncultured a... 159 2e-37
ref|YP_356790.1| reverse transcriptase/maturase [Pelobacter... 159 2e-37
ref|YP_823828.1| RNA-directed DNA polymerase [Solibacter us... 159 2e-37
gb|EAF90419.1| unknown [environmental sequence] 159 2e-37
gb|AAB68949.1| maturase-related protein [Pseudomonas alcali... 159 2e-37
ref|YP_316587.1| ORF718 [Thalassiosira pseudonana] >gi|7410... 159 2e-37
ref|NP_744001.1| group II intron-encoding maturase [Pseudom... 159 2e-37
ref|YP_356735.1| group II intron-encoding maturase [Pelobac... 159 3e-37
ref|NP_743410.1| group II intron-encoding maturase [Pseudom... 159 3e-37
ref|YP_520077.1| hypothetical protein DSY3844 [Desulfitobac... 159 3e-37
gb|EAF80015.1| unknown [environmental sequence] 158 4e-37
ref|ZP_01291806.1| RNA-directed DNA polymerase [delta prote... 158 4e-37
emb|CAJ17913.1| type II intron reverse transcriptase [Candi... 158 4e-37
ref|ZP_01287920.1| RNA-directed DNA polymerase [delta prote... 158 5e-37
gb|AAV34200.1| maturase-related protein [Escherichia coli] 158 5e-37
ref|NP_742796.1| group II intron-encoding maturase [Pseudom... 158 5e-37
gb|EAY45156.1| RNA-directed DNA polymerase (Reverse transcr... 157 7e-37
gb|AAL51020.1|AF453998_2 maturase-related protein [Serratia... 157 7e-37
dbj|BAD18279.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18238.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18265.1| N-terminal region of reverse transcriptase-... 157 7e-37
dbj|BAD18272.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18278.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18235.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18277.1| reverse transcriptase-maturase-endonuclease... 157 7e-37
dbj|BAD18281.1| N-terminal region of reverse transcriptase-... 157 7e-37
ref|NP_241090.1| transposase (11) [Bacillus halodurans C-12... 157 7e-37
ref|NP_240905.1| transposase (11) [Bacillus halodurans C-12... 157 7e-37
gb|EAY43476.1| RNA-directed DNA polymerase (Reverse transcr... 157 9e-37
gb|AAO46869.1| unknown [Salmonella typhimurium] 157 9e-37
dbj|BAD18239.1| reverse transcriptase-maturase-endonuclease... 157 9e-37
gb|EAF84852.1| unknown [environmental sequence] 157 1e-36
dbj|BAD18275.1| reverse transcriptase-maturase-endonuclease... 157 1e-36
ref|ZP_01454036.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
ref|YP_435100.1| Retron-type reverse transcriptase [Hahella... 156 2e-36
ref|NP_350100.1| Reverse transcriptase/maturase family prot... 156 2e-36
ref|ZP_01179051.1| RNA-directed DNA polymerase [Bacillus ce... 156 2e-36
ref|ZP_00779772.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
ref|ZP_01455690.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
ref|ZP_00778259.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
ref|ZP_00779744.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
ref|ZP_00778090.1| RNA-directed DNA polymerase (Reverse tra... 156 2e-36
dbj|BAD18273.1| reverse transcriptase-maturase-endonuclease... 155 3e-36
ref|ZP_00859346.1| RNA-directed DNA polymerase [Bradyrhizob... 155 3e-36
ref|ZP_00859809.1| RNA-directed DNA polymerase [Bradyrhizob... 155 3e-36
gb|AAK50439.1| unknown [Pseudomonas aeruginosa] 155 3e-36
ref|YP_579041.1| RNA-directed DNA polymerase (Reverse trans... 155 3e-36
ref|YP_736616.1| RNA-directed DNA polymerase [Shewanella sp... 155 3e-36
ref|ZP_00779761.1| RNA-directed DNA polymerase (Reverse tra... 155 3e-36
ref|ZP_00236429.1| group II intron reverse transcriptase ma... 155 3e-36
ref|ZP_01454685.1| RNA-directed DNA polymerase (Reverse tra... 155 5e-36
ref|YP_431061.1| RNA-directed DNA polymerase (Reverse trans... 154 6e-36
ref|NP_652801.1| group II intron reverse transcriptase/matu... 154 8e-36
ref|NP_052719.1| hypothetical protein pxo1_23 [Bacillus ant... 154 8e-36
ref|YP_824574.1| RNA-directed DNA polymerase (Reverse trans... 154 8e-36
ref|ZP_00238469.1| group II intron reverse transcriptase/ma... 154 8e-36
ref|YP_953032.1| RNA-directed DNA polymerase [Mycobacterium... 154 1e-35
ref|ZP_01456005.1| RNA-directed DNA polymerase [Thermoanaer... 154 1e-35
gb|ABG56796.1| putative retA reverse transcriptase [Klebsie... 154 1e-35
ref|YP_571595.1| RNA-directed DNA polymerase (Reverse trans... 154 1e-35
ref|NP_941260.1| putative reverse transcriptase/maturase [S... 154 1e-35
ref|YP_734248.1| RNA-directed DNA polymerase [Shewanella sp... 154 1e-35
ref|ZP_00779165.1| RNA-directed DNA polymerase (Reverse tra... 154 1e-35
ref|ZP_00778012.1| RNA-directed DNA polymerase (Reverse tra... 154 1e-35
gb|EAK54700.1| unknown [environmental sequence] 153 1e-35
ref|ZP_01454593.1| RNA-directed DNA polymerase (Reverse tra... 153 1e-35
ref|ZP_01454025.1| RNA-directed DNA polymerase (Reverse tra... 153 1e-35
gb|AAD16434.1| maturase-related protein [Pseudomonas putida] 153 1e-35
ref|YP_147208.1| recombinase of Bh.Int-like element [Geobac... 153 1e-35
ref|YP_147308.1| recombinase of Bh.Int-like element [Geobac... 153 1e-35
ref|NP_052642.1| reverse transcriptase [Escherichia coli O1... 153 1e-35
ref|ZP_00778999.1| RNA-directed DNA polymerase (Reverse tra... 153 1e-35
ref|ZP_01288346.1| RNA-directed DNA polymerase (Reverse tra... 153 2e-35
gb|AAK40354.1| unknown [Serratia marcescens] 153 2e-35
gb|AAK54203.1|AF369871_5 unknown [Acinetobacter genomosp. 3... 153 2e-35
ref|ZP_00777657.1| RNA-directed DNA polymerase (Reverse tra... 153 2e-35
ref|ZP_00779296.1| RNA-directed DNA polymerase (Reverse tra... 153 2e-35
ref|ZP_00777923.1| RNA-directed DNA polymerase (Reverse tra... 153 2e-35
ref|ZP_01454863.1| RNA-directed DNA polymerase (Reverse tra... 152 2e-35
ref|YP_481295.1| RNA-directed DNA polymerase [Frankia sp. C... 152 3e-35
gb|AAU83409.1| retron type reverse transcriptase [unculture... 152 3e-35
ref|ZP_00417747.1| RNA-directed DNA polymerase [Azotobacter... 152 3e-35
ref|YP_833935.1| RNA-directed DNA polymerase (Reverse trans... 152 4e-35
emb|CAJ67336.1| group II intron reverse transcriptase/matur... 152 4e-35
ref|NP_821400.1| reverse transcriptase homolog; similar to ... 152 4e-35
ref|YP_096083.1| reverse transcriptase [Legionella pneumoph... 152 4e-35
ref|YP_622689.1| RNA-directed DNA polymerase (Reverse trans... 152 4e-35
ref|ZP_01693972.1| group II intron-encoded protein LtrA [Mi... 151 5e-35
ref|ZP_01460933.1| putative reverse transcriptase/maturase ... 151 5e-35
ref|ZP_01169814.1| recombinase of Bh.Int-like element [Baci... 151 5e-35
ref|ZP_00419417.1| RNA-directed DNA polymerase [Azotobacter... 151 7e-35
ref|YP_707231.1| RNA-directed DNA polymerase (reverse trans... 150 9e-35
ref|YP_633367.1| group II intron, maturase [Myxococcus xant... 150 9e-35
ref|ZP_01503400.1| RNA-directed DNA polymerase (Reverse tra... 150 1e-34
ref|ZP_01289230.1| RNA-directed DNA polymerase (Reverse tra... 150 1e-34
ref|YP_559418.1| RNA-directed DNA polymerase [Burkholderia ... 150 1e-34
ref|YP_552146.1| RNA-directed DNA polymerase [Polaromonas s... 150 1e-34
ref|ZP_00603106.1| RNA-directed DNA polymerase (Reverse tra... 150 1e-34
ref|ZP_01562162.1| RNA-directed DNA polymerase (Reverse tra... 150 1e-34
emb|CAA24060.1| COX1 /OXI3 intron 2 protein [Saccharomyces ... 150 1e-34
ref|YP_473386.1| group II intron reverse transcriptase [Clo... 150 1e-34
emb|CAJ17954.1| type II intron reverse transcriptase [Candi... 150 1e-34
ref|NP_009309.1| Ai2p [Saccharomyces cerevisiae] >gi|840281... 150 1e-34
ref|ZP_00592586.1| RNA-directed DNA polymerase [Prosthecoch... 150 1e-34
gb|EAI93723.1| unknown [environmental sequence] 149 2e-34
ref|YP_692355.1| reverse transcriptase/maturase homolog [Al... 149 2e-34
ref|NP_943681.1| putative reverse transcriptase and intron ... 149 2e-34
ref|ZP_00415975.1| RNA-directed DNA polymerase (Reverse tra... 149 2e-34
gb|EAK45922.1| unknown [environmental sequence] 149 2e-34
gb|EAY43473.1| RNA-directed DNA polymerase (Reverse transcr... 149 2e-34
ref|YP_717185.1| hypothetical protein MapooMp69 [Marchantia... 149 2e-34
ref|ZP_01288370.1| RNA-directed DNA polymerase (Reverse tra... 149 2e-34
ref|ZP_01255009.1| prophage LambdaSa1, reverse transcriptas... 149 2e-34
gb|AAC09454.1| coxI intron2 ORF [Marchantia polymorpha] 149 2e-34
ref|NP_979988.1| reverse transcriptase/endonuclease [Bacill... 149 2e-34
ref|NP_150406.1| hypothetical protein PylioMp35 [Pylaiella ... 149 2e-34
ref|YP_866604.1| RNA-directed DNA polymerase [Magnetococcus... 149 3e-34
ref|ZP_01455349.1| RNA-directed DNA polymerase [Thermoanaer... 149 3e-34
ref|YP_558351.1| Putative reverse transcriptase-maturase- e... 149 3e-34
emb|CAJ29542.1| hypothetical protein [Klebsiella pneumoniae] 149 3e-34
ref|NP_693637.1| recombinase for Bh.Int [Oceanobacillus ihe... 149 3e-34
emb|CAA40766.1| unnamed protein product [Kluyveromyces lact... 149 3e-34
ref|YP_823291.1| RNA-directed DNA polymerase (Reverse trans... 149 3e-34
ref|ZP_01564259.1| RNA-directed DNA polymerase [Burkholderi... 148 4e-34
ref|ZP_01274407.1| RNA-directed DNA polymerase [Lactobacill... 148 4e-34
ref|ZP_01164737.1| RNA-directed DNA polymerase [Lactobacill... 148 4e-34
ref|ZP_01163212.1| RNA-directed DNA polymerase [Lactobacill... 148 4e-34
ref|ZP_01163677.1| RNA-directed DNA polymerase [Lactobacill... 148 4e-34
ref|ZP_00572520.1| RNA-directed DNA polymerase [Frankia sp.... 148 4e-34
ref|ZP_00981773.1| COG3344: Retron-type reverse transcripta... 148 6e-34
ref|ZP_00981087.1| COG3344: Retron-type reverse transcripta... 148 6e-34
ref|ZP_00373064.1| reverse transcriptase-like [Wolbachia en... 148 6e-34
ref|YP_787989.1| hypothetical protein pO86A1_p023 [Escheric... 147 7e-34
ref|ZP_01255119.1| prophage LambdaSa1, reverse transcriptas... 147 7e-34
ref|NP_982041.1| group II intron reverse transcriptase/matu... 147 7e-34
ref|NP_691001.1| recombinase for Bh.Int [Oceanobacillus ihe... 147 7e-34
ref|ZP_01574420.1| RNA-directed DNA polymerase (Reverse tra... 147 9e-34
gb|AAX97500.1| putative reverse transcriptase [Lactobacillu... 147 9e-34
ref|NP_811210.1| putative reverse transcriptase [Bacteroide... 147 9e-34
ref|NP_692725.1| recombinase for Bh.Int [Oceanobacillus ihe... 147 9e-34
ref|ZP_01164559.1| RNA-directed DNA polymerase [Lactobacill... 147 9e-34
ref|ZP_01163852.1| RNA-directed DNA polymerase [Lactobacill... 147 9e-34
ref|ZP_00567506.1| RNA-directed DNA polymerase (Reverse tra... 147 9e-34
ref|ZP_00416915.1| RNA-directed DNA polymerase (Reverse tra... 147 9e-34
ref|ZP_00416133.1| RNA-directed DNA polymerase [Azotobacter... 147 9e-34
gb|EAF20822.1| unknown [environmental sequence] 147 1e-33
gb|EAY42902.1| RNA-directed DNA polymerase (Reverse transcr... 147 1e-33
ref|ZP_01566561.1| RNA-directed DNA polymerase (Reverse tra... 147 1e-33
ref|ZP_01499445.1| RNA-directed DNA polymerase (Reverse tra... 147 1e-33
ref|ZP_00591288.1| RNA-directed DNA polymerase [Prosthecoch... 147 1e-33
ref|YP_624254.1| RNA-directed DNA polymerase (Reverse trans... 147 1e-33
ref|ZP_01274325.1| RNA-directed DNA polymerase [Lactobacill... 146 2e-33
ref|ZP_01252367.1| prophage LambdaSa1, reverse transcriptas... 146 2e-33
dbj|BAD02266.1| reverse transcriptase [Enterococcus faecium] 146 2e-33
ref|ZP_00583298.1| RNA-directed DNA polymerase [Shewanella ... 146 2e-33
gb|EAH67532.1| unknown [environmental sequence] 146 2e-33
gb|EAY52094.1| RNA-directed DNA polymerase (Reverse transcr... 146 2e-33
ref|ZP_01505672.1| RNA-directed DNA polymerase (reverse tra... 146 2e-33
ref|YP_752154.1| RNA-directed DNA polymerase [Shewanella fr... 146 2e-33
ref|NP_980154.1| reverse transcriptase/endonuclease protein... 146 2e-33
gb|EAI93720.1| unknown [environmental sequence] 145 3e-33
gb|ABK00773.1| putative reverse transcriptase/endonuclease ... 145 3e-33
ref|YP_788747.1| putative reverse transcriptase [Pseudomona... 145 3e-33
gb|AAC38715.1| maturase-related protein [Streptococcus pneu... 145 3e-33
emb|CAI33690.1| putative group II intron protein [Streptoco... 145 3e-33
ref|ZP_01114653.1| hypothetical protein MED297_02697 [Reine... 145 3e-33
ref|ZP_00415865.1| RNA-directed DNA polymerase [Azotobacter... 145 3e-33
ref|ZP_00372888.1| group II intron-associated open reading ... 145 3e-33
gb|EAF09809.1| unknown [environmental sequence] 145 4e-33
ref|ZP_01433029.1| RNA-directed DNA polymerase [Shewanella ... 145 4e-33
ref|ZP_01274253.1| RNA-directed DNA polymerase [Lactobacill... 145 4e-33
ref|YP_585025.1| RNA-directed DNA polymerase (Reverse trans... 145 4e-33
ref|ZP_00583012.1| RNA-directed DNA polymerase (Reverse tra... 145 4e-33
ref|ZP_00372858.1| group II intron-associated open reading ... 145 4e-33
gb|EAY52093.1| RNA-directed DNA polymerase (Reverse transcr... 145 5e-33
emb|CAI34417.1| putative group II intron protein [Streptoco... 145 5e-33
ref|NP_864090.1| reverse transcriptase/maturase [Rhodopirel... 144 6e-33
ref|NP_437373.1| putative reverse transcriptasematurase pro... 144 6e-33
ref|ZP_00426374.1| RNA-directed DNA polymerase (Reverse tra... 144 6e-33
ref|ZP_00372402.1| reverse transcriptase, truncation [Wolba... 144 6e-33
gb|EAF47145.1| unknown [environmental sequence] 144 8e-33
gb|ABN04186.1| intron encoded protein [Bacillus sp. EA1] 144 8e-33
gb|AAR12165.1| putative reverse transcriptase/maturase [Str... 144 8e-33
ref|YP_913038.1| RNA-directed DNA polymerase (Reverse trans... 144 8e-33
ref|ZP_00418819.1| RNA-directed DNA polymerase (Reverse tra... 144 8e-33
gb|EAF77901.1| unknown [environmental sequence] 144 1e-32
ref|ZP_01236443.1| RNA-directed DNA polymerase [Vibrio angu... 144 1e-32
ref|YP_552148.1| RNA-directed DNA polymerase (Reverse trans... 144 1e-32
ref|YP_245937.1| possible group II intron reverse transcrip... 144 1e-32
ref|NP_066494.1| orf762 [Rhodomonas salina] >gi|10444191|gb... 144 1e-32
ref|ZP_00910425.1| probable reverse transcriptase/maturase ... 144 1e-32
gb|AAL26981.1|AF380672_5 maturase-related protein [Streptoc... 143 1e-32
emb|CAC35989.1| putative reverse transcriptase and maturase... 143 1e-32
ref|NP_700366.1| ORF777 [Schizosaccharomyces octosporus] >g... 143 1e-32
pir||S07649 gene coI intron 1 protein - Neurospora crassa m... 143 1e-32
dbj|BAA82060.1| IepA [Bacillus megaterium] 143 1e-32
ref|ZP_00784712.1| GBSi1, group II intron, maturase [Strept... 143 1e-32
ref|ZP_00785813.1| GBSi1, group II intron, maturase [Strept... 143 1e-32
ref|ZP_00781403.1| GBSi1, group II intron, maturase [Strept... 143 1e-32
ref|YP_582408.1| RNA-directed DNA polymerase (Reverse trans... 143 1e-32
ref|ZP_01258906.1| RNA-directed DNA polymerase [Vibrio algi... 143 2e-32
ref|YP_052710.1| putative reverse transcriptase [Candida st... 143 2e-32
ref|YP_912637.1| RNA-directed DNA polymerase (Reverse trans... 143 2e-32
ref|ZP_00372263.1| reverse transcriptase-like [Wolbachia en... 143 2e-32
gb|EAF28244.1| unknown [environmental sequence] 142 2e-32
ref|ZP_01624240.1| RNA-directed DNA polymerase [Lyngbya sp.... 142 2e-32
gb|AAR84623.1| putative reverse transcriptase/maturase [Str... 142 2e-32
ref|NP_116805.1| putative maturase [Microscilla sp. PRE1] >... 142 2e-32
ref|ZP_00628808.1| RNA-directed DNA polymerase (Reverse tra... 142 2e-32
ref|YP_481415.1| RNA-directed DNA polymerase [Frankia sp. C... 142 3e-32
emb|CAI33993.1| putative group II intron protein [Streptoco... 142 3e-32
ref|ZP_00372351.1| reverse transcriptase-like [Wolbachia en... 142 3e-32
ref|ZP_00372936.1| group II intron-associated open reading ... 142 3e-32
ref|ZP_01620416.1| RNA-directed DNA polymerase [Lyngbya sp.... 142 4e-32
ref|NP_688240.1| GBSi1, group II intron, maturase [Streptoc... 142 4e-32
ref|ZP_00910945.1| probable reverse transcriptase/maturase ... 142 4e-32
ref|ZP_00372533.1| reverse transcriptase-like [Wolbachia en... 141 5e-32
ref|ZP_00372354.1| reverse transcriptase-like [Wolbachia en... 141 5e-32
ref|ZP_00372509.1| reverse transcriptase-like [Wolbachia en... 141 5e-32
ref|ZP_01621868.1| RNA-directed DNA polymerase [Lyngbya sp.... 141 7e-32
ref|ZP_01290540.1| RNA-directed DNA polymerase [delta prote... 141 7e-32
ref|YP_551382.1| RNA-directed DNA polymerase [Polaromonas s... 141 7e-32
ref|NP_437843.1| putative reverse transcriptasematurase pro... 141 7e-32
ref|ZP_01624138.1| RNA-directed DNA polymerase [Lyngbya sp.... 140 9e-32
ref|ZP_01314810.1| hypothetical protein Wendoof_01000356 [W... 140 9e-32
gb|AAZ06578.1| hypothetical protein pAW63_007 [Bacillus thu... 140 9e-32
ref|ZP_01620855.1| hypothetical protein L8106_18741 [Lyngby... 140 1e-31
ref|YP_724165.1| RNA-directed DNA polymerase (Reverse trans... 140 1e-31
ref|ZP_01660661.1| RNA-directed DNA polymerase [Ralstonia p... 140 2e-31
ref|ZP_01624349.1| hypothetical protein L8106_03749 [Lyngby... 140 2e-31
ref|ZP_01314958.1| hypothetical protein Wendoof_01000204 [W... 140 2e-31
ref|YP_559793.1| RNA-directed DNA polymerase (Reverse trans... 140 2e-31
ref|NP_791987.1| group II intron, maturase [Pseudomonas syr... 140 2e-31
gb|ABC48889.1| hypothetical protein [Enterococcus faecium] 140 2e-31
ref|NP_085340.1| putative reverse transcriptase, fragment [... 140 2e-31
ref|ZP_01505681.1| RNA-directed DNA polymerase (Reverse tra... 139 2e-31
ref|ZP_00372319.1| reverse transcriptase, truncation [Wolba... 139 2e-31
gb|EAF42887.1| unknown [environmental sequence] 139 3e-31
ref|ZP_01622362.1| RNA-directed DNA polymerase [Lyngbya sp.... 139 3e-31
emb|CAB81565.1| putative reverse transcriptase-maturase-tra... 139 3e-31
ref|ZP_01134398.1| RNA-directed DNA polymerase (Reverse tra... 139 3e-31
ref|ZP_01131707.1| RNA-directed DNA polymerase (Reverse tra... 139 3e-31
ref|NP_966456.1| reverse transcriptase, putative [Wolbachia... 139 3e-31
ref|ZP_01133539.1| RNA-directed DNA polymerase (Reverse tra... 139 3e-31
ref|ZP_00372869.1| group II intron-associated open reading ... 139 3e-31
ref|ZP_00515756.1| RNA-directed DNA polymerase [Crocosphaer... 139 3e-31
gb|ABK00630.1| group II intron reverse transcriptase/matura... 138 4e-31
ref|ZP_01518247.1| RNA-directed DNA polymerase (Reverse tra... 138 4e-31
ref|ZP_01519691.1| RNA-directed DNA polymerase (Reverse tra... 138 4e-31
ref|ZP_01521997.1| RNA-directed DNA polymerase (Reverse tra... 138 4e-31
ref|ZP_00589124.1| RNA-directed DNA polymerase [Pelodictyon... 138 4e-31
ref|ZP_00372862.1| group II intron-associated open reading ... 138 4e-31
ref|ZP_00372824.1| group II intron-associated open reading ... 138 4e-31
ref|ZP_00131874.1| COG3344: Retron-type reverse transcripta... 138 4e-31
gb|EAJ41213.1| unknown [environmental sequence] 137 8e-31
ref|YP_896190.1| possible group II intron [Bacillus thuring... 137 8e-31
ref|ZP_01427728.1| RNA-directed DNA polymerase [Herpetosiph... 137 8e-31
ref|NP_928428.1| hypothetical protein plu1111 [Photorhabdus... 137 8e-31
ref|ZP_01693971.1| RNA-directed DNA polymerase [Microscilla... 137 1e-30
ref|ZP_01620857.1| RNA-directed DNA polymerase [Lyngbya sp.... 137 1e-30
ref|YP_547803.1| RNA-directed DNA polymerase [Polaromonas s... 137 1e-30
ref|NP_774835.1| probable group II intron, maturase/reverse... 137 1e-30
ref|ZP_01135990.1| RNA-directed DNA polymerase (Reverse tra... 137 1e-30
ref|YP_752871.1| RNA-directed DNA polymerase (reverse trans... 137 1e-30
ref|ZP_00591770.1| RNA-directed DNA polymerase (Reverse tra... 137 1e-30
ref|ZP_01622978.1| RNA-directed DNA polymerase [Lyngbya sp.... 137 1e-30
ref|ZP_01126239.1| prophage LambdaSa1, reverse transcriptas... 137 1e-30
ref|ZP_00517543.1| RNA-directed DNA polymerase [Crocosphaer... 137 1e-30
gb|EAI85559.1| unknown [environmental sequence] 136 2e-30
gb|EAH87057.1| unknown [environmental sequence] 136 2e-30
ref|ZP_01624054.1| RNA-directed DNA polymerase [Lyngbya sp.... 136 2e-30
ref|ZP_01455073.1| RNA-directed DNA polymerase (Reverse tra... 136 2e-30
ref|ZP_00695398.1| COG3344: Retron-type reverse transcripta... 136 2e-30
ref|ZP_00696746.1| COG3344: Retron-type reverse transcripta... 136 2e-30
ref|ZP_00514209.1| RNA-directed DNA polymerase [Crocosphaer... 136 2e-30
ref|ZP_01619460.1| RNA-directed DNA polymerase [Lyngbya sp.... 136 2e-30
emb|CAA50529.1| unnamed protein product [Calothrix sp.] 136 2e-30
ref|ZP_01135661.1| RNA-directed DNA polymerase (Reverse tra... 136 2e-30
ref|ZP_00530428.1| RNA-directed DNA polymerase [Chlorobium ... 136 2e-30
ref|ZP_01624369.1| reverse transcriptase-like protein [Lyng... 135 3e-30
ref|ZP_01519621.1| RNA-directed DNA polymerase (Reverse tra... 135 3e-30
ref|YP_864580.1| RNA-directed DNA polymerase (Reverse trans... 135 3e-30
gb|EAI51151.1| unknown [environmental sequence] 135 4e-30
ref|NP_768555.1| probable reverse transcriptase/maturase fa... 135 4e-30
ref|ZP_00591766.1| RNA-directed DNA polymerase [Prosthecoch... 135 4e-30
ref|ZP_01637811.1| RNA-directed DNA polymerase [Pseudomonas... 135 5e-30
ref|ZP_01273759.1| RNA-directed DNA polymerase [Lactobacill... 135 5e-30
emb|CAA24071.1| COX1/OXI3 intron 1 protein [Saccharomyces c... 135 5e-30
gb|AAA67532.1| oxi3 [Saccharomyces cerevisiae] 135 5e-30
ref|YP_551398.1| RNA-directed DNA polymerase [Polaromonas s... 135 5e-30
ref|NP_746557.1| group II intron-encoding maturase, putativ... 135 5e-30
dbj|BAC14200.1| recombinase for Bh.Int (divided with OB2244... 135 5e-30
ref|NP_009310.1| Ai1p [Saccharomyces cerevisiae] >gi|840281... 135 5e-30
ref|YP_753018.1| RNA-directed DNA polymerase (reverse trans... 135 5e-30
ref|YP_911931.1| RNA-directed DNA polymerase (Reverse trans... 135 5e-30
ref|ZP_00372901.1| group II intron-associated open reading ... 135 5e-30
ref|YP_551673.1| RNA-directed DNA polymerase [Polaromonas s... 134 6e-30
gb|AAG60892.1|AF322013_11 ID459 [Bradyrhizobium japonicum] 134 6e-30
ref|NP_489246.1| hypothetical protein all5206 [Nostoc sp. P... 134 6e-30
gb|AAG60820.1|AF322012_125 ID266 [Bradyrhizobium japonicum] 134 8e-30
ref|YP_283916.1| RNA-directed DNA polymerase (Reverse trans... 134 8e-30
ref|NP_768477.1| probable reverse transcriptase/maturase fa... 134 8e-30
ref|NP_066689.1| hypothetical protein pRi1724_p109 [Agrobac... 134 8e-30
ref|YP_722884.1| RNA-directed DNA polymerase (Reverse trans... 134 8e-30
ref|NP_039503.1| hypothetical protein ScpofMp05 [Schizosacc... 134 1e-29
ref|ZP_00820224.1| COG3344: Retron-type reverse transcripta... 134 1e-29
ref|YP_720199.1| RNA-directed DNA polymerase (Reverse trans... 134 1e-29
emb|CAJ74578.1| conserved hypothetical protein [Candidatus ... 133 1e-29
ref|NP_150407.1| hypothetical protein PylioMp36 [Pylaiella ... 133 1e-29
ref|ZP_00372872.1| group II intron-associated open reading ... 133 1e-29
ref|ZP_00515528.1| RNA-directed DNA polymerase [Crocosphaer... 133 1e-29
ref|ZP_00592895.1| RNA-directed DNA polymerase [Prosthecoch... 133 2e-29
ref|NP_681409.1| reverse transcriptase [Thermosynechococcus... 132 2e-29
ref|ZP_00372889.1| group II intron-associated open reading ... 132 2e-29
ref|ZP_00514944.1| RNA-directed DNA polymerase (Reverse tra... 132 2e-29
ref|ZP_00516851.1| RNA-directed DNA polymerase (Reverse tra... 132 2e-29
ref|ZP_01624348.1| RNA-directed DNA polymerase [Lyngbya sp.... 132 3e-29
gb|AAQ91581.1| reverse transcriptase/HNH endonuclease [Chla... 132 3e-29
ref|YP_374572.1| RNA-directed DNA polymerase [Pelodictyon l... 132 4e-29
ref|ZP_00516498.1| RNA-directed DNA polymerase (Reverse tra... 132 4e-29
ref|NP_054463.1| hypothetical protein MapooMp72 [Marchantia... 131 5e-29
ref|ZP_00515225.1| RNA-directed DNA polymerase [Crocosphaer... 131 5e-29
ref|ZP_01623869.1| RNA-directed DNA polymerase [Lyngbya sp.... 131 7e-29
ref|ZP_00516556.1| RNA-directed DNA polymerase (Reverse tra... 131 7e-29
ref|NP_681099.1| reverse transcriptase [Thermosynechococcus... 130 9e-29
ref|ZP_00920385.1| COG3344: Retron-type reverse transcripta... 130 9e-29
ref|ZP_00372847.1| group II intron-associated open reading ... 130 9e-29
ref|ZP_01255437.1| prophage LambdaSa1, reverse transcriptas... 130 1e-28
ref|NP_681951.1| reverse transcriptase [Thermosynechococcus... 130 1e-28
ref|ZP_00661610.1| RNA-directed DNA polymerase [Prosthecoch... 130 1e-28
ref|YP_313406.1| putative reverse transcriptase, fragment [... 130 2e-28
ref|NP_618520.1| reverse transcriptase [Methanosarcina acet... 130 2e-28
ref|NP_680822.1| reverse transcriptase [Thermosynechococcus... 130 2e-28
ref|ZP_00515663.1| RNA-directed DNA polymerase [Crocosphaer... 130 2e-28
ref|NP_634707.1| reverse transcriptase [Methanosarcina maze... 129 2e-28
gb|EAE84120.1| unknown [environmental sequence] 129 3e-28
ref|YP_723172.1| RNA-directed DNA polymerase (Reverse trans... 129 3e-28
ref|ZP_00517863.1| RNA-directed DNA polymerase (Reverse tra... 129 3e-28
ref|NP_085354.1| putative reverse transcriptase, fragment [... 128 5e-28
ref|NP_815981.1| group II intron reverse transcriptase matu... 128 5e-28
ref|YP_025510.1| ORF47 [Caedibacter taeniospiralis] >gi|404... 128 6e-28
ref|YP_305255.1| reverse transcriptase [Methanosarcina bark... 128 6e-28
ref|ZP_00513911.1| RNA-directed DNA polymerase (Reverse tra... 128 6e-28
ref|NP_150378.1| hypothetical protein PylioMp02 [Pylaiella ... 127 8e-28
ref|YP_720200.1| RNA-directed DNA polymerase (Reverse trans... 127 8e-28
ref|NP_150379.1| hypothetical protein PylioMp04 [Pylaiella ... 127 1e-27
gb|AAU83694.1| reverse transcriptase/maturase [uncultured a... 127 1e-27
ref|YP_319917.1| RNA-directed DNA polymerase [Anabaena vari... 127 1e-27
gb|AAU83155.1| reverse transcriptase [uncultured archaeon G... 126 2e-27
ref|YP_454890.1| putative phage reverse transcriptase/matur... 126 2e-27
ref|NP_768692.1| probable maturase; reverse transcriptase [... 126 2e-27
ref|ZP_00514519.1| RNA-directed DNA polymerase [Crocosphaer... 126 2e-27
ref|NP_943638.1| hypothetical protein CapafMp06 [Candida pa... 125 3e-27
gb|ABD36452.1| putative reverse transcriptase [Candida para... 125 3e-27
ref|NP_943637.2| hypothetical protein CapafMp06 [Candida pa... 125 3e-27
ref|NP_489471.1| hypothetical protein alr8560 [Nostoc sp. P... 125 3e-27
ref|ZP_01251997.1| hypothetical protein P700755_12047 [Psyc... 125 4e-27
ref|ZP_01255075.1| hypothetical protein P700755_13795 [Psyc... 125 4e-27
ref|YP_076109.1| hypothetical protein STH2280 [Symbiobacter... 125 4e-27
ref|ZP_01622462.1| hypothetical protein L8106_13300 [Lyngby... 124 7e-27
ref|ZP_01574410.1| RNA-directed DNA polymerase (Reverse tra... 124 7e-27
ref|ZP_01251704.1| hypothetical protein P700755_17739 [Psyc... 124 7e-27
ref|YP_502673.1| RNA-directed DNA polymerase [Methanospiril... 124 1e-26
ref|YP_504197.1| RNA-directed DNA polymerase [Methanospiril... 124 1e-26
gb|AAU83418.1| retron type reverse transcriptase [unculture... 124 1e-26
gb|AAM75218.1|AF454824_12 EF0012 [Enterococcus faecalis] 124 1e-26
ref|YP_504529.1| RNA-directed DNA polymerase [Methanospiril... 124 1e-26
ref|YP_504062.1| RNA-directed DNA polymerase [Methanospiril... 124 1e-26
ref|ZP_01622211.1| hypothetical protein L8106_02707 [Lyngby... 123 1e-26
ref|ZP_00569775.1| RNA-directed DNA polymerase [Frankia sp.... 123 1e-26
ref|ZP_01255010.1| hypothetical protein P700755_16499 [Psyc... 123 2e-26
ref|YP_565406.1| RNA-directed DNA polymerase [Methanococcoi... 122 2e-26
ref|YP_565475.1| RNA-directed DNA polymerase [Methanococcoi... 122 2e-26
ref|YP_566633.1| RNA-directed DNA polymerase [Methanococcoi... 122 2e-26
ref|ZP_00372878.1| reverse transcriptase [Wolbachia endosym... 122 2e-26
ref|NP_680905.1| maturase; reverse transcriptase [Thermosyn... 122 3e-26
ref|ZP_00588202.1| Protein of unknown function DUF48 [Pelod... 122 4e-26
ref|YP_636002.1| intron-encoded reverse transcriptase [Scen... 121 6e-26
ref|YP_566665.1| RNA-directed DNA polymerase [Methanococcoi... 121 6e-26
ref|YP_502794.1| RNA-directed DNA polymerase [Methanospiril... 121 6e-26
ref|ZP_01666913.1| RNA-directed DNA polymerase (Reverse tra... 121 7e-26
ref|ZP_01622144.1| RNA-directed DNA polymerase [Lyngbya sp.... 120 9e-26
ref|ZP_01623697.1| hypothetical protein L8106_29025 [Lyngby... 120 9e-26
gb|AAL78688.1| maturase [uncultured marine bacterium] 120 9e-26
pir||S78199 probable maturase protein 3 - fission yeast (S... 120 9e-26
gb|AAD12069.1| reverse transcriptase homolog [Pavlova lutheri] 120 1e-25
ref|NP_811528.1| reverse transcriptase [Bacteroides thetaio... 120 1e-25
ref|NP_923123.1| reverse transcriptase homolog [Gloeobacter... 120 2e-25
ref|ZP_00515598.1| RNA-directed DNA polymerase [Crocosphaer... 120 2e-25
ref|NP_485509.1| hypothetical protein alr1468 [Nostoc sp. P... 119 2e-25
gb|EAY49802.1| RNA-directed DNA polymerase (Reverse transcr... 119 3e-25
ref|ZP_00515135.1| RNA-directed DNA polymerase (Reverse tra... 119 3e-25
ref|ZP_01623692.1| RNA-directed DNA polymerase [Lyngbya sp.... 119 4e-25
ref|NP_937600.1| hypothetical protein VVA1544 [Vibrio vulni... 119 4e-25
ref|ZP_00777921.1| group II intron-encoding maturase [Therm... 119 4e-25
gb|EAH62173.1| unknown [environmental sequence] 118 5e-25
gb|AAU83697.1| reverse transcriptase [uncultured archaeon G... 118 5e-25
ref|ZP_00518321.1| RNA-directed DNA polymerase [Crocosphaer... 118 5e-25
ref|ZP_01629977.1| hypothetical protein N9414_10033 [Nodula... 117 8e-25
gb|AAG60933.1|AF322013_52 ID555 [Bradyrhizobium japonicum] 117 8e-25
emb|CAA72334.3| reverse transcriptase/maturase [Sinorhizobi... 117 8e-25
ref|ZP_00695491.1| COG3344: Retron-type reverse transcripta... 117 8e-25
ref|ZP_00372886.1| group II intron-associated open reading ... 117 8e-25
ref|ZP_00516873.1| RNA-directed DNA polymerase (Reverse tra... 117 1e-24
ref|ZP_00514900.1| RNA-directed DNA polymerase (Reverse tra... 117 1e-24
gb|EAE65219.1| unknown [environmental sequence] 117 1e-24
ref|YP_129838.1| putative reverse transcriptase/maturase fa... 116 2e-24
ref|NP_437164.1| putative reverse transcriptasematurase pro... 116 2e-24
ref|NP_436239.1| Reverse transcriptase, maturase [Sinorhizo... 116 2e-24
ref|ZP_00517329.1| RNA-directed DNA polymerase (Reverse tra... 116 2e-24
gb|AAU95643.1| reverse transcriptase/maturase [Sinorhizobiu... 115 3e-24
ref|YP_717178.1| hypothetical protein MapooMp76 [Marchantia... 115 4e-24
gb|AAC09440.1| cob intron3 ORF [Marchantia polymorpha] 115 4e-24
sp|P19593|RDPO_SCEOB Probable reverse transcriptase >gi|813... 115 4e-24
ref|ZP_01127786.1| reverse transcriptase [Nitrococcus mobil... 115 4e-24
ref|ZP_00908957.1| putative reverse transcriptase [Clostrid... 115 4e-24
ref|YP_720955.1| RNA-directed DNA polymerase [Trichodesmium... 115 4e-24
emb|CAA54637.1| orf [Escherichia coli] 115 5e-24
ref|ZP_01413129.1| putative reverse transcriptasematurase p... 114 7e-24
ref|ZP_00418578.1| group II intron-encoding maturase [Azoto... 114 7e-24
ref|ZP_00519389.1| RNA-directed DNA polymerase (Reverse tra... 114 7e-24
gb|EAJ92046.1| unknown [environmental sequence] 114 9e-24
ref|YP_671710.1| putative reverse transcriptase [Escherichi... 114 9e-24
gb|AAN57785.1| reverse transcriptase [Escherichia coli] 114 9e-24
gb|AAP83798.1| reverse transcriptase/maturase [Ensifer adha... 114 1e-23
gb|AAU95640.1| truncated reverse transcriptase/maturase [Si... 114 1e-23
ref|ZP_01388900.1| probable reverse transcriptase/maturase ... 113 2e-23
ref|ZP_01352327.1| RNA-directed DNA polymerase (Reverse tra... 113 2e-23
ref|NP_490347.1| hypothetical protein alr7241 [Nostoc sp. P... 113 2e-23
ref|ZP_00800440.1| RNA-directed DNA polymerase (Reverse tra... 113 2e-23
gb|AAQ84048.1| maturase [Euglena myxocylindracea] 113 2e-23
ref|NP_085197.1| putative reverse transcriptase [Shigella f... 113 2e-23
ref|NP_066492.1| orf621 [Rhodomonas salina] >gi|10444189|gb... 113 2e-23
ref|NP_681909.1| putative reverse transcriptase [Thermosyne... 113 2e-23
gb|EAE36340.1| unknown [environmental sequence] 112 3e-23
ref|YP_976205.1| putative maturase [Mycobacterium bovis BCG... 112 3e-23
ref|NP_214585.1| POSSIBLE MATURASE [Mycobacterium tuberculo... 112 3e-23
ref|NP_334487.1| hypothetical protein MT0077 [Mycobacterium... 112 3e-23
ref|ZP_00877081.1| COG3344: Retron-type reverse transcripta... 112 3e-23
ref|ZP_01682973.1| hypothetical protein MtubF_02000076 [Myc... 112 3e-23
ref|ZP_00517204.1| RNA-directed DNA polymerase (Reverse tra... 112 3e-23
ref|YP_911935.1| putative reverse transcriptase/maturase fa... 112 3e-23
ref|ZP_00517579.1| RNA-directed DNA polymerase (Reverse tra... 112 3e-23
gb|EAB44764.1| unknown [environmental sequence] 111 6e-23
ref|ZP_01274030.1| RNA-directed DNA polymerase (Reverse tra... 111 6e-23
ref|ZP_00813725.1| RNA-directed DNA polymerase (Reverse tra... 111 6e-23
ref|ZP_00513219.1| Protein of unknown function DUF48 [Chlor... 110 1e-22
ref|ZP_01622225.1| hypothetical protein L8106_02777 [Lyngby... 110 1e-22
ref|YP_912490.1| CRISPR-associated protein Cas1 [Chlorobium... 110 1e-22
ref|NP_617694.1| reverse transcriptase [Methanosarcina acet... 110 1e-22
ref|YP_147149.1| group II intron reverse transcriptase/matu... 110 1e-22
ref|ZP_00733672.1| COG3344: Retron-type reverse transcripta... 110 1e-22
ref|NP_619481.1| reverse transcriptase [Methanosarcina acet... 110 2e-22
ref|ZP_00516312.1| RNA-directed DNA polymerase (Reverse tra... 110 2e-22
ref|ZP_00738538.1| Reverse transcriptase [Bacillus thuringi... 109 2e-22
ref|YP_159835.1| reverse transcriptase/maturase [Azoarcus s... 109 3e-22
gb|EAI79215.1| unknown [environmental sequence] 108 5e-22
ref|ZP_01622057.1| hypothetical protein L8106_22651 [Lyngby... 108 5e-22
ref|ZP_00514430.1| RNA-directed DNA polymerase (Reverse tra... 108 5e-22
ref|ZP_00372868.1| group II intron-associated open reading ... 108 6e-22
ref|YP_717180.1| hypothetical protein MapooMp78 [Marchantia... 107 8e-22
gb|AAC09445.1| atpA intron2 ORF [Marchantia polymorpha] 107 8e-22
gb|AAW64795.1| putative reverse transcriptase [Shigella fle... 107 1e-21
ref|YP_720359.1| RNA-directed DNA polymerase (Reverse trans... 107 1e-21
ref|YP_406035.1| putative reverse transcriptase [Shigella d... 106 2e-21
ref|YP_720399.1| RNA-directed DNA polymerase [Trichodesmium... 106 2e-21
ref|YP_537105.1| probable maturase [Paracoccidioides brasil... 106 2e-21
ref|NP_700371.1| ORF786 [Schizosaccharomyces octosporus] >g... 106 2e-21
ref|NP_619051.1| reverse transcriptase [Methanosarcina acet... 106 2e-21
ref|YP_313290.1| hypothetical protein SSO_P035 [Shigella so... 104 7e-21
ref|ZP_01132551.1| probable reverse transcriptase/maturase ... 104 7e-21
ref|ZP_00574059.1| similar to Retron-type reverse transcrip... 104 9e-21
ref|ZP_00515194.1| RNA-directed DNA polymerase (Reverse tra... 103 2e-20
ref|YP_865050.1| RNA-directed DNA polymerase (Reverse trans... 102 3e-20
ref|NP_943705.1| putative reverse transcriptase and intron ... 102 3e-20
ref|NP_768598.1| probable reverse transcriptase/maturase fa... 102 3e-20
emb|CAB76395.1| reverse transcriptase homologue ND5 i4 grp ... 102 5e-20
ref|NP_074948.1| orf779 [Podospora anserina] 102 5e-20
ref|ZP_00798839.1| RNA-directed DNA polymerase (Reverse tra... 101 6e-20
ref|YP_721746.1| RNA-directed DNA polymerase [Trichodesmium... 101 6e-20
ref|ZP_00517210.1| RNA-directed DNA polymerase (Reverse tra... 101 6e-20
ref|ZP_00799369.1| RNA-directed DNA polymerase (Reverse tra... 100 1e-19
ref|ZP_01533407.1| RNA-directed DNA polymerase (Reverse tra... 100 1e-19
emb|CAJ17934.1| type II intron reverse transcriptase [Candi... 100 1e-19
ref|ZP_01252807.1| prophage LambdaSa1, reverse transcriptas... 100 2e-19
ref|ZP_00372859.1| group II intron-associated open reading ... 100 2e-19
ref|YP_720364.1| RNA-directed DNA polymerase (Reverse trans... 100 2e-19
ref|ZP_00372845.1| reverse transcriptase [Wolbachia endosym... 99 3e-19
ref|ZP_00372846.1| group II intron-associated open reading ... 99 3e-19
ref|ZP_00571311.1| RNA-directed DNA polymerase (Reverse tra... 99 4e-19
ref|NP_054445.1| reverse transcriptase [Marchantia polymorp... 99 5e-19
ref|ZP_01359337.1| RNA-directed DNA polymerase (Reverse tra... 98 7e-19
ref|ZP_00372933.1| group II intron-associated open reading ... 98 7e-19
ref|ZP_00372900.1| group II intron-associated open reading ... 98 9e-19
ref|NP_049292.1| orf544 [Porphyra purpurea] >gi|4106928|gb|... 97 2e-18
ref|ZP_01148699.1| conserved hypothetical protein [Desulfot... 97 2e-18
ref|ZP_01425057.1| RNA-directed DNA polymerase (Reverse tra... 96 3e-18
ref|NP_619093.1| reverse transcriptase [Methanosarcina acet... 96 3e-18
ref|YP_159464.1| reverse transcriptase/retron type, probabl... 96 3e-18
ref|ZP_01126792.1| hypothetical protein NB231_12399 [Nitroc... 96 3e-18
ref|ZP_00372874.1| group II intron-associated open reading ... 96 3e-18
ref|ZP_00372898.1| group II intron-associated open reading ... 96 3e-18
ref|ZP_00372903.1| group II intron-associated open reading ... 96 3e-18
ref|YP_684407.1| putative reverse transcriptase [Oltmannsie... 96 3e-18
ref|ZP_01089625.1| group II intron-encoding maturase [Blast... 95 6e-18
ref|ZP_00800317.1| RNA-directed DNA polymerase (Reverse tra... 95 6e-18
ref|ZP_00604433.1| group II intron reverse transcriptase ma... 95 6e-18
ref|NP_619052.1| reverse transcriptase [Methanosarcina acet... 95 7e-18
ref|NP_359575.1| Transposase, uncharacterized, truncation [... 94 1e-17
ref|ZP_00515139.1| RNA-directed DNA polymerase (Reverse tra... 94 1e-17
ref|ZP_00532246.1| probable reverse transcriptase/maturase ... 94 1e-17
ref|NP_774953.1| similar to maturase [Bradyrhizobium japoni... 94 2e-17
ref|ZP_00766283.1| RNA-directed DNA polymerase (Reverse tra... 94 2e-17
ref|NP_049293.1| orf546 [Porphyra purpurea] >gi|4106929|gb|... 92 4e-17
ref|ZP_00374223.1| reverse transcriptase [Wolbachia endosym... 92 5e-17
gb|AAU83450.1| reverse transcriptase [uncultured archaeon G... 92 6e-17
ref|NP_001065434.1| Os10g0567500 [Oryza sativa (japonica cu... 92 6e-17
ref|NP_199503.1| RNA binding / RNA-directed DNA polymerase ... 92 6e-17
dbj|BAC13389.1| recombinase for Bh.Int (divided with OB1431... 92 6e-17
ref|ZP_01622173.1| hypothetical protein L8106_02517 [Lyngby... 91 8e-17
ref|ZP_01109953.1| hypothetical maturase [Alteromonas macle... 91 8e-17
ref|ZP_01505671.1| RNA-directed DNA polymerase (Reverse tra... 91 1e-16
gb|EAJ73225.1| unknown [environmental sequence] 90 2e-16
ref|ZP_00345884.1| COG3344: Retron-type reverse transcripta... 90 2e-16
ref|ZP_01622215.1| RNA-directed DNA polymerase [Lyngbya sp.... 89 3e-16
ref|ZP_00373854.1| reverse transcriptase [Wolbachia endosym... 89 3e-16
ref|YP_717179.1| hypothetical protein MapooMp77 [Marchantia... 89 4e-16
gb|AAC09444.1| atpA intron1 ORF [Marchantia polymorpha] 89 4e-16
ref|NP_906056.1| CRISPR-associated protein Cas1 [Porphyromo... 88 7e-16
ref|ZP_00372916.1| reverse transcriptase-like [Wolbachia en... 88 9e-16
gb|EAD00180.1| unknown [environmental sequence] 87 1e-15
ref|ZP_01134185.1| probable reverse transcriptase/maturase ... 87 2e-15
ref|ZP_00420016.1| RNA-directed DNA polymerase (Reverse tra... 87 2e-15
ref|ZP_00516418.1| similar to Retron-type reverse transcrip... 87 2e-15
gb|EAH68201.1| unknown [environmental sequence] 87 2e-15
gb|EAC03277.1| unknown [environmental sequence] 87 2e-15
ref|NP_943667.1| putative reverse transcriptase and intron ... 86 3e-15
ref|ZP_00800859.1| RNA-directed DNA polymerase (Reverse tra... 86 3e-15
emb|CAJ73760.1| hypothetical protein [Candidatus Kuenenia s... 86 3e-15
emb|CAJ73759.1| similar to group II intron encoded reverse ... 86 3e-15
ref|YP_482811.1| RNA-directed DNA polymerase [Frankia sp. C... 86 4e-15
ref|ZP_01127781.1| transposase [Nitrococcus mobilis Nb-231]... 86 4e-15
ref|ZP_00913207.1| conserved hypothetical protein [Rhodobac... 86 4e-15
ref|YP_406274.1| IS911 ORF2 [Shigella boydii Sb227] >gi|812... 85 6e-15
ref|ZP_01140463.1| similar to reverse transcriptase [Geobac... 85 6e-15
ref|ZP_01126803.1| hypothetical protein NB231_12454 [Nitroc... 85 6e-15
ref|NP_783704.1| hypothetical protein pYVa127/90_p51 [Yersi... 85 8e-15
ref|YP_076066.1| group II intron-encoding maturase variant ... 85 8e-15
gb|AAZ29204.1| maturase-like protein [Pellia epiphylla] 84 1e-14
ref|NP_054458.1| hypothetical protein MapooMp71 [Marchantia... 84 1e-14
ref|NP_634719.1| reverse transcriptase [Methanosarcina maze... 84 1e-14
ref|ZP_00568127.1| similar to Retron-type reverse transcrip... 84 1e-14
ref|YP_263744.1| possible RNA-directed DNA polymerase (Reve... 84 2e-14
ref|ZP_00374073.1| group II intron-associated open reading ... 84 2e-14
gb|AAZ29199.1| maturase-like protein [Pellia epiphylla] 83 2e-14
ref|NP_619482.1| reverse transcriptase [Methanosarcina acet... 82 4e-14
emb|CAC79979.1| orf513 [Escherichia coli] 82 4e-14
ref|ZP_01180785.1| recombinase for Bh.Int [Bacillus cereus ... 82 4e-14
gb|AAZ29200.1| maturase-like protein [Pellia epiphylla] 82 5e-14
ref|ZP_01273450.1| reverse transcriptase/maturase family pr... 82 5e-14
ref|NP_490348.1| hypothetical protein alr7242 [Nostoc sp. P... 81 1e-13
ref|YP_406113.1| hypothetical protein SDY_P112 [Shigella dy... 80 1e-13
ref|ZP_00516633.1| RNA-directed DNA polymerase (Reverse tra... 80 2e-13
ref|ZP_01407953.1| hypothetical protein SpneT_02001604 [Str... 79 3e-13
ref|YP_133059.1| hypothetical protein PBPRB1392 [Photobacte... 79 5e-13
ref|YP_963843.1| RNA-directed DNA polymerase (Reverse trans... 79 5e-13
gb|AAX14409.1| group II intron-associated open reading fram... 78 9e-13
gb|EAF10211.1| unknown [environmental sequence] 77 1e-12
ref|YP_313393.1| putative reverse transcriptase, fragment [... 77 1e-12
ref|NP_783481.1| hypothetical transposase [Shewanella oneid... 77 1e-12
ref|ZP_00799492.1| RNA-directed DNA polymerase (Reverse tra... 77 1e-12
ref|ZP_00372947.1| group II intron-associated open reading ... 77 2e-12
ref|ZP_00373562.1| reverse transcriptase [Wolbachia endosym... 77 2e-12
gb|EAK22141.1| unknown [environmental sequence] 76 3e-12
ref|YP_539017.1| group II intron-associated open reading fr... 76 3e-12
ref|ZP_00372906.1| reverse transcriptase [Wolbachia endosym... 76 3e-12
ref|NP_085341.1| putative reverse transcriptase, fragment [... 76 4e-12
ref|ZP_01142744.1| prophage LambdaSa1, reverse transcriptas... 76 4e-12
ref|ZP_00372924.1| reverse transcriptase [Wolbachia endosym... 76 4e-12
ref|ZP_01127782.1| Retron-type reverse transcriptase-like p... 75 5e-12
ref|ZP_00372679.1| reverse transcriptase-like [Wolbachia en... 75 5e-12
ref|ZP_01126595.1| prophage LambdaSa1, reverse transcriptas... 75 8e-12
gb|EAF65972.1| unknown [environmental sequence] 74 1e-11
ref|ZP_00372909.1| group II intron-associated open reading ... 74 1e-11
ref|ZP_00519460.1| reverse transcriptase homolog [Crocospha... 74 1e-11
gb|EAY51703.1| Retron-type reverse transcriptase-like [Shew... 74 2e-11
ref|ZP_01567094.1| Group II intron, maturase-specific [Burk... 74 2e-11
ref|YP_406207.1| putative reverse transcriptase, fragment [... 74 2e-11
ref|ZP_00574540.1| probable reverse transcriptase/maturase ... 74 2e-11
ref|ZP_01594931.1| Retron-type reverse transcriptase [Geoba... 73 3e-11
ref|ZP_01412710.1| putative reverse transcriptase [Sinorhiz... 73 3e-11
ref|YP_859764.1| hypothetical protein APECO1_2297 [Escheric... 72 4e-11
ref|YP_539001.1| group II intron-associated open reading fr... 72 4e-11
ref|NP_756400.1| Putative maturase-related protein [Escheri... 72 4e-11
ref|YP_131971.1| hypothetical protein PBPRB0298 [Photobacte... 72 4e-11
ref|YP_338960.1| RNA-directed DNA polymerase [Pseudoalterom... 72 5e-11
ref|NP_443824.1| Y4dO [Rhizobium sp. NGR234] >gi|2496608|sp... 72 7e-11
ref|ZP_01180786.1| recombinase of Bh.Int-like element [Baci... 72 7e-11
ref|YP_960495.1| Retron-type reverse transcriptase-like [Ma... 71 9e-11
ref|NP_177575.1| RNA binding / RNA-directed DNA polymerase ... 71 1e-10
ref|YP_001023811.1| hypothetical protein [Placozoan sp. BZ4... 70 1e-10
ref|ZP_00568126.1| group II intron-encoding maturase, putat... 70 1e-10
emb|CAJ74288.1| conserved hypothetical protein [Candidatus ... 70 2e-10
ref|ZP_00799285.1| probable reverse transcriptase/maturase ... 70 2e-10
ref|ZP_00515566.1| reverse transcriptase homolog [Crocospha... 70 2e-10
ref|YP_752879.1| RNA-directed DNA polymerase (reverse trans... 69 3e-10
ref|NP_811369.1| putative reverse transcriptase/maturase [B... 69 6e-10
ref|ZP_00592855.1| reverse transcriptase [Prosthecochloris ... 69 6e-10
ref|ZP_00518308.1| similar to Retron-type reverse transcrip... 68 7e-10
ref|NP_811368.1| reverse transcriptase/maturase family prot... 68 1e-09
ref|YP_419823.1| Retron-type reverse transcriptase [Magneto... 67 1e-09
ref|NP_627708.1| maturase-related protein [Streptomyces coe... 67 2e-09
ref|ZP_00519461.1| reverse transcriptase homolog [Crocospha... 67 2e-09
ref|YP_910941.1| hypothetical protein Cpha266_0459 [Chlorob... 67 2e-09
ref|ZP_01628848.1| hypothetical protein N9414_00100 [Nodula... 66 3e-09
ref|YP_553284.1| RNA-directed DNA polymerase (Reverse trans... 66 3e-09
ref|ZP_00111381.1| COG3344: Retron-type reverse transcripta... 66 3e-09
ref|ZP_01131929.1| probable reverse transcriptase/maturase ... 66 4e-09
ref|ZP_01621625.1| RNA-directed DNA polymerase [Lyngbya sp.... 65 5e-09
ref|ZP_01290538.1| Retron-type reverse transcriptase-like [... 65 5e-09
ref|NP_758929.1| ORF37 [Vibrio harveyi bacteriophage VHML] ... 65 5e-09
ref|NP_681788.1| reverse transcriptase [Thermosynechococcus... 65 5e-09
ref|YP_762496.1| maturase [Tripsacum dactyloides] >gi|11443... 65 6e-09
ref|YP_762334.1| maturase [Sorghum bicolor] >gi|114309660|g... 65 6e-09
ref|YP_740435.1| maturase [Zea luxurians] >gi|110287599|gb|... 65 6e-09
ref|YP_588356.1| maturase [Zea mays subsp. mays] >gi|407950... 65 6e-09
ref|YP_514669.1| maturase-related protein [Oryza sativa (in... 65 6e-09
ref|YP_740356.1| maturase [Zea perennis] >gi|114151637|ref|... 65 6e-09
pir||D38490 maturase-related protein (nad1 intron) - evenin... 65 6e-09
gb|EAE95135.1| unknown [environmental sequence] 65 8e-09
gb|EAY33710.1| RNA-directed DNA polymerase [Vibrio cholerae... 64 1e-08
ref|ZP_01407952.1| hypothetical protein SpneT_02001603 [Str... 64 1e-08
emb|CAJ71414.1| conserved hypothetical protein [Candidatus ... 64 1e-08
ref|NP_958675.1| reverse transcriptase [Bordetella phage BP... 64 1e-08
gb|AAZ29197.1| maturase-like protein [Pellia epiphylla] 64 1e-08
ref|YP_537115.1| probable maturase [Paracoccidioides brasil... 64 1e-08
ref|YP_132470.1| hypothetical protein PBPRB0798 [Photobacte... 64 1e-08
ref|YP_717127.1| maturase-related protein [Brassica napus] ... 64 1e-08
ref|ZP_01111831.1| hypothetical protein MADE_07601 [Alterom... 64 1e-08
gb|AAQ82028.2| ORF2 [Tetrahymena thermophila] 64 2e-08
gb|AAQ82026.1| ORF2 [Tetrahymena thermophila] 64 2e-08
ref|YP_720880.1| hypothetical protein Tery_1035 [Trichodesm... 64 2e-08
gb|AAQ08377.1| reverse transcriptase/maturase-like protein ... 63 2e-08
ref|NP_943680.1| putative reverse transcriptase and intron ... 63 2e-08
ref|NP_174294.1| RNA binding / RNA-directed DNA polymerase ... 63 2e-08
ref|NP_617577.1| reverse transcriptase [Methanosarcina acet... 63 2e-08
ref|ZP_00580485.1| RNA-directed DNA polymerase (Reverse tra... 63 3e-08
gb|EAK51021.1| unknown [environmental sequence] 62 4e-08
gb|AAQ82023.1| ORF2 [Tetrahymena thermophila] 62 5e-08
ref|NP_085512.1| maturase [Arabidopsis thaliana] >gi|685102... 62 5e-08
ref|NP_659829.1| putative reverse transcriptase/maturase pr... 62 5e-08
ref|YP_132471.1| hypothetical protein PBPRB0799 [Photobacte... 62 5e-08
ref|ZP_00604434.1| group II intron reverse transcriptase ma... 62 5e-08
ref|ZP_01630404.1| hypothetical protein N9414_06729 [Nodula... 62 7e-08
ref|ZP_01555949.1| RNA-directed DNA polymerase (Reverse tra... 62 7e-08
emb|CAA66945.1| maturase [Arabidopsis thaliana] 62 7e-08
ref|ZP_00588519.1| reverse transcriptase [Pelodictyon phaeo... 61 9e-08
ref|YP_724224.1| Group II intron, maturase-specific [Tricho... 61 9e-08
ref|NP_001066633.1| Os12g0407300 [Oryza sativa (japonica cu... 61 1e-07
gb|AAV68268.1| maturase [Apodanthes caseariae] 61 1e-07
emb|CAB85525.1| maturase-like protein [Arabidopsis thaliana] 61 1e-07
gb|AAA67711.1| maturase-related protein 61 1e-07
gb|AAA70293.1| maturase-rel 61 1e-07
gb|ABA97559.1| intron maturase, type II family protein, put... 61 1e-07
ref|NP_196025.2| unknown protein [Arabidopsis thaliana] 61 1e-07
ref|YP_420857.1| Retron-type reverse transcriptase [Magneto... 61 1e-07
ref|ZP_01273451.1| reverse transcriptase/maturase family pr... 60 2e-07
ref|NP_487537.1| hypothetical protein alr3497 [Nostoc sp. P... 60 2e-07
ref|NP_774846.1| probable maturase; reverse transcriptase [... 60 2e-07
gb|EAB52851.1| unknown [environmental sequence] 60 2e-07
ref|NP_489054.1| hypothetical protein all5014 [Nostoc sp. P... 60 2e-07
ref|ZP_01433380.1| RNA-directed DNA polymerase [Shewanella ... 60 3e-07
gb|AAU03294.1| maturase [Endospermum moluccanum] 60 3e-07
emb|CAA05884.1| maturase [Solanum tuberosum] 60 3e-07
ref|ZP_01164697.1| reverse transcriptase/maturase family pr... 60 3e-07
gb|AAZ29196.1| maturase-like protein [Pellia epiphylla] 59 4e-07
gb|AAU03305.1| maturase [Hevea sp. Gillespie 4272] 59 4e-07
gb|AAU03329.1| maturase [Neoscortechinia kingii] 59 4e-07
gb|AAU03346.1| maturase [Ricinus communis] 59 4e-07
gb|AAU03282.1| maturase [Conceveiba martiana] 59 4e-07
gb|AAU03284.1| maturase [Croton alabamensis var. alabamensis] 59 4e-07
gb|AAF14767.1|AF197775_1 maturase [Cissampelos pareira] 59 4e-07
ref|ZP_00592520.1| RNA-directed DNA polymerase (Reverse tra... 59 4e-07
ref|ZP_00590553.1| RNA-directed DNA polymerase (Reverse tra... 59 4e-07
gb|AAU03307.1| maturase [Homalanthus populneus] 59 6e-07
gb|AAQ08734.1| maturase [Polygala tatarinowii] 59 6e-07
ref|XP_001028676.1| hypothetical protein TTHERM_02198750 [T... 59 6e-07
ref|YP_865891.1| reverse transcriptase/retron type [Magneto... 59 6e-07
gb|AAU03281.1| maturase [Codiaeum variegatum] 58 8e-07
ref|ZP_00345602.1| COG3344: Retron-type reverse transcripta... 58 8e-07
gb|EAH72120.1| unknown [environmental sequence] 58 1e-06
gb|EAH60911.1| unknown [environmental sequence] 58 1e-06
gb|AAV68282.1| maturase [Julbernardia globiflora] 58 1e-06
gb|AAV68277.1| maturase [Mitrastema yamamotoi] 58 1e-06
gb|ABD65344.1| maturase [Heuchera sp. Qiu 95076] 57 1e-06
ref|ZP_01251996.1| Reverse transcriptase/maturase family pr... 57 1e-06
gb|AAU03276.1| maturase [Cespedesia bonplandii] 57 1e-06
gb|ABD36069.1| maturase-related protein [Beta vulgaris subs... 57 2e-06
gb|AAU03335.1| maturase [Pera bicolor] 57 2e-06
emb|CAJ17862.1| PAM342 pseudogene [Candidatus Phytoplasma s... 57 2e-06
gb|EAF70775.1| unknown [environmental sequence] 57 2e-06
ref|YP_717184.1| hypothetical protein MapooMp81 [Marchantia... 57 2e-06
gb|AAU03298.1| maturase [Euphorbia polychroma] 57 2e-06
gb|AAQ56245.1| maturase [Excoecaria agallocha] 57 2e-06
gb|AAQ08665.1| maturase [Lythrum salicaria] 57 2e-06
ref|ZP_01254488.1| hypothetical protein P700755_19967 [Psyc... 56 3e-06
gb|AAQ08756.1| maturase [Taihangia rupestris] 56 3e-06
gb|AAQ08721.1| maturase [Ochna integerrima] 56 3e-06
gb|AAF14799.1|AF197807_1 maturase [Petrophile canescens] 56 3e-06
ref|YP_411629.1| RNA-directed DNA polymerase (Reverse trans... 56 3e-06
ref|ZP_00515251.1| HNH endonuclease [Crocosphaera watsonii ... 56 3e-06
ref|XP_788364.2| PREDICTED: similar to ENSANGP00000020392 [... 56 4e-06
gb|AAN65209.1| maturase [Punica granatum] 56 4e-06
gb|AAQ82027.1| ORF2 [Tetrahymena thermophila] 56 4e-06
gb|AAQ08708.1| maturase [Blepharis hildebrandtii] 56 4e-06
gb|AAQ08697.1| maturase [Duabanga grandiflora] 56 4e-06
gb|EAG67997.1| unknown [environmental sequence] 55 5e-06
ref|YP_481188.1| hypothetical protein Francci3_2087 [Franki... 55 5e-06
gb|AAQ08758.1| maturase [Camellia sp. YJB-2002] 55 5e-06
gb|AAF14728.1|AF197736_1 maturase [Asparagus officinalis] 55 5e-06
pir||S17923 rbcL intron protein - green alga (Bryopsis maxi... 55 5e-06
ref|ZP_00372934.1| group II intron-associated open reading ... 55 5e-06
ref|ZP_00372942.1| group II intron-associated open reading ... 55 5e-06
ref|ZP_00515998.1| hypothetical protein CwatDRAFT_3739 [Cro... 55 5e-06
gb|AAV68270.1| maturase [Sapria poilanei] 55 6e-06
gb|AAV68271.1| maturase [Sapria ram] 55 6e-06
gb|AAF14758.1|AF197766_1 maturase [Annona muricata] 55 6e-06
gb|AAF14785.1|AF197793_1 maturase [Platanus occidentalis] 55 6e-06
gb|AAF14776.1|AF197784_1 maturase [Pachysandra procumbens] 55 6e-06
ref|YP_374777.1| hypothetical protein Plut_0869 [Pelodictyo... 55 6e-06
ref|NP_001058135.1| Os06g0634100 [Oryza sativa (japonica cu... 55 6e-06
gb|ABD65327.1| maturase [Cyperus alternifolius] 55 8e-06
gb|ABD65328.1| maturase [Oryza sativa] 55 8e-06
gb|AAU03344.1| maturase [Quiina pteridophylla] 55 8e-06
gb|AAQ08669.1| maturase [Primula sp. YJB-2002] 55 8e-06
gb|AAQ08666.1| maturase [Symplocos setchuensis] 55 8e-06
gb|AAQ08737.1| maturase [Couepia robusta] 55 8e-06
gb|AAQ08668.1| maturase [Empetrum nigrum] 55 8e-06
gb|AAQ08712.1| maturase [Cecropia peltata] 55 8e-06
gb|AAQ08671.1| maturase [Eberhardtia aurata] 55 8e-06
gb|AAQ08733.1| maturase [Xanthophyllum hainanense] 55 8e-06
ref|YP_338959.1| hypothetical protein PSHAa0418 [Pseudoalte... 55 8e-06
ref|XP_789861.2| PREDICTED: similar to UDP-glucuronosyltran... 54 1e-05
dbj|BAD82946.1| non-LTR retrotransposon R1Bmks ORF2 protein... 54 1e-05
gb|AAQ08654.1| maturase [Itea yunnanensis] 54 1e-05
gb|AAQ08679.1| maturase [Vaccinium vitis-idaea] 54 1e-05
gb|AAQ08753.1| maturase [Oxalis corymbosa] 54 1e-05
gb|AAQ08757.1| maturase [Diospyros mollifolia] 54 1e-05
gb|AAQ08674.1| maturase [Crypteronia paniculata] 54 1e-05
gb|AAQ08651.1| maturase [Pentaphylax euryoides] 54 1e-05
gb|AAQ08678.1| maturase [Pieris formosa] 54 1e-05
gb|AAF14800.1|AF197808_1 maturase [Grevillea robusta] 54 1e-05
gb|AAD12231.1| putative reverse transcriptase [Fusarium oxy... 54 1e-05
gb|AAF14804.1|AF197812_1 maturase [Lactoris fernandeziana] 54 1e-05
gb|AAF14724.1|AF197732_1 maturase [Aristolochia macrophylla] 54 1e-05
gb|AAF14786.1|AF197794_1 maturase [Persoonia katerae] 54 1e-05
gb|AAF14762.1|AF197770_1 maturase [Magnolia tripetala] 54 1e-05
gb|AAF14761.1|AF197769_1 maturase [Mauloutchia chapelieri] 54 1e-05
gb|AAC13649.1| reverse transcriptase 54 1e-05
ref|YP_277064.1| prophage PSPPH06, putative reverse transcr... 54 1e-05
gb|AAN65201.1| maturase [Corynocarpus laevigatus] 54 1e-05
gb|EAF12739.1| unknown [environmental sequence] 54 1e-05
gb|ABD65340.1| maturase [Berberidopsis beckleri] 54 1e-05
ref|XP_001196820.1| PREDICTED: similar to ENSANGP0000002792... 54 1e-05
dbj|GAA01777.1| unnamed protein product [Pelotomaculum ther... 54 1e-05
gb|AAV68272.1| maturase [Sapria himalayana] 54 1e-05
gb|AAU03327.1| maturase [Micrantheum hexandrum] 54 1e-05
gb|AAU03353.1| maturase [Trigonia nivea] 54 1e-05
gb|AAU03263.1| maturase [Austrobuxus megacarpus] 54 1e-05
gb|AAU03299.1| maturase [Euphronia guianensis] 54 1e-05
gb|AAQ08740.1| maturase [Drypetes perreticulata] 54 1e-05
gb|AAU03277.1| maturase [Chrysobalanus icaco] >gi|51451729|... 54 2e-05
gb|AAU03262.1| maturase [Atuna racemosa] 54 2e-05
gb|AAU03313.1| maturase [Kiggelaria sp. Alford 51] 54 2e-05
gb|AAQ08710.1| maturase [Osyris wightiana] 54 2e-05
gb|AAQ08681.1| maturase [Deutzia amurensis] 54 2e-05
gb|AAQ08702.1| maturase [Aglaia odorata] 54 2e-05
gb|AAF14794.1|AF197802_1 maturase [Palmeria scandens] 54 2e-05
gb|AAF14764.1|AF197772_1 maturase [Eupomatia bennettii] 54 2e-05
gb|AAF14780.1|AF197788_1 maturase [Sanguinaria canadensis] 54 2e-05
gb|AAF14763.1|AF197771_1 maturase [Degeneria vitiensis] 54 2e-05
gb|AAF14755.1|AF197763_1 maturase [Cananga odorata] 54 2e-05
gb|AAY35072.1| maturase R [Schoepfia schreberi] 54 2e-05
ref|NP_359576.1| Transposase, uncharacterized, truncation [... 54 2e-05
ref|ZP_00513557.1| HNH endonuclease [Crocosphaera watsonii ... 54 2e-05
gb|AAV68281.1| maturase [Pavonia spinifex] 53 2e-05
gb|AAV68278.1| maturase [Bdallophyton americanum] 53 2e-05
gb|AAV68280.1| maturase [Abutilon x hybridum] 53 2e-05
gb|AAU03289.1| maturase [Dissiliaria muelleri] 53 2e-05
gb|AAO63600.1| maturase [Franklinia alatamaha] 53 2e-05
gb|AAQ08647.1| maturase [Humulus japonicus] 53 2e-05
gb|AAQ08646.1| maturase [Debregeasia salicifolia] 53 2e-05
gb|AAQ08751.1| maturase [Schizomeria serrata] 53 2e-05
gb|AAQ08752.1| maturase [Elaeocarpus apiculatus] 53 2e-05
gb|AAQ08761.1| maturase [Ardisia crenata] 53 2e-05
gb|AAQ08686.1| maturase [Portulacaria afra] 53 2e-05
gb|AAQ08723.1| maturase [Albizia schimperiana] 53 2e-05
gb|AAQ08641.1| maturase [Nothofagus dombeyi] 53 2e-05
gb|AAQ08676.1| maturase [Capsella bursa-pastoris] 53 2e-05
gb|AAQ08645.1| maturase [Zelkova serrata] 53 2e-05
gb|AAF14803.1|AF197811_1 maturase [Didymeles perrieri] 53 2e-05
ref|YP_379989.1| reverse transcriptase family protein [Chlo... 53 2e-05
gb|ABD65325.1| maturase [Nepenthes sp. 'Kosobe'] 53 3e-05
gb|AAU03333.1| maturase [Paropsia madagascariensis] 53 3e-05
gb|AAU03325.1| maturase [Medusagyne oppositifolia] 53 3e-05
gb|AAQ56252.1| maturase [Laguncularia racemosa] 53 3e-05
gb|AAQ08670.1| maturase [Sladenia celastrifolia] 53 3e-05
gb|AAQ08642.1| maturase [Celtis bungeana] 53 3e-05
gb|AAQ08656.1| maturase [Paeonia japonica] 53 3e-05
gb|AAQ08707.1| maturase [Jasminum abyssinicum] 53 3e-05
gb|AAQ08754.1| maturase [Barbeya oleoides] 53 3e-05
gb|AAQ08718.1| maturase [Gunnera manicata] 53 3e-05
gb|AAF14737.1|AF197745_1 maturase [Orontium aquaticum] 53 3e-05
gb|AAF14790.1|AF197798_1 maturase [Laurus nobilis] 53 3e-05
gb|AAF14735.1|AF197743_1 maturase [Pleea tenuifolia] 53 3e-05
ref|YP_277063.1| prophage PSPPH06, putative reverse transcr... 53 3e-05
pir||S35080 hypothetical protein - Calothrix sp 53 3e-05
ref|ZP_00714070.1| COG3344: Retron-type reverse transcripta... 53 3e-05
gb|ABD65350.1| maturase [Hortonia floribunda] 52 4e-05
gb|ABD65336.1| maturase [Hedera helix] 52 4e-05
dbj|BAD66743.1| maturase [Beta vulgaris subsp. vulgaris] 52 4e-05
gb|AAO63598.1| maturase [Camellia henryana var. trichocarpa... 52 4e-05
gb|AAQ08742.1| maturase [Malpighia glauca] 52 4e-05
gb|AAQ08648.1| maturase [Cudrania tricuspidata] 52 4e-05
gb|AAQ08717.1| maturase [Skimmia japonica] 52 4e-05
gb|AAQ08739.1| maturase [Bischofia javanica] 52 4e-05
gb|AAQ08684.1| maturase [Alluaudia humbertii] 52 4e-05
gb|AAQ08659.1| maturase [Euscaphis japonica] 52 4e-05
gb|AAQ08719.1| maturase [Reinwardtia indica] 52 4e-05
gb|AAQ08729.1| maturase [Hemsleya lijiangensis] 52 4e-05
gb|AAF14783.1|AF197791_1 maturase [Tetracentron sinense] 52 4e-05
ref|YP_460783.1| reverse transcriptase [Syntrophus aciditro... 52 4e-05
gb|AAN65191.1| maturase [Stachyurus chinensis] 52 4e-05
ref|YP_173354.1| maturase-related protein [Nicotiana tabacu... 52 4e-05
ref|NP_064065.1| maturase [Beta vulgaris subsp. vulgaris] >... 52 4e-05
gb|ABD65357.1| maturase [Stegolepis sp. Qiu 97132] 52 5e-05
gb|ABD65343.1| maturase [Simmondsia chinensis] 52 5e-05
gb|ABD65347.1| maturase [Nothofagus moorei] 52 5e-05
gb|ABD65335.1| maturase [Phytolacca americana] 52 5e-05
gb|AAU03337.1| maturase [Petalostigma pubescens] 52 5e-05
gb|AAU03322.1| maturase [Malesherbia linearifolia] 52 5e-05
gb|AAU03260.1| maturase [Androstachys johnsonii] 52 5e-05
gb|AAU03319.1| maturase [Linum arboreum] 52 5e-05
gb|AAU03291.1| maturase [Putranjiva roxburghii] 52 5e-05
gb|AAU03345.1| maturase [Reinwardtia indica] 52 5e-05
gb|AAU03331.1| maturase [Ochthocosmus longipedicellatus] 52 5e-05
gb|AAU03296.1| maturase [Eucryphia milliganii] 52 5e-05
gb|AAU03308.1| maturase [Hugonia platysepala] 52 5e-05
gb|AAU03283.1| maturase [Crinodendron hookerianum] 52 5e-05
gb|AAU03280.1| maturase [Clutia pulchella] 52 5e-05
gb|AAO63616.1| maturase [Dillenia indica] 52 5e-05
gb|AAQ56255.1| maturase [Sonneratia ovata] 52 5e-05
gb|AAQ08735.1| maturase [Balanops vieillardi] 52 5e-05
gb|AAQ08749.1| maturase [Rourea minor] 52 5e-05
gb|AAQ08705.1| maturase [Basella alba] 52 5e-05
gb|AAF14806.1|AF197814_1 maturase [Peperomia obtusifolia] 52 5e-05
gb|AAF14716.1|AF197724_1 maturase [Potamogeton berchtoldii] 52 5e-05
gb|ABD65345.1| maturase [Coffea arabica] 52 7e-05
gb|ABD65329.1| maturase [Gunnera monoica] 52 7e-05
gb|ABD65339.1| maturase [Oncidium sphacelatum] 52 7e-05
gb|AAU03355.1| maturase [Turnera ulmifolia] 52 7e-05
gb|AAU03336.1| maturase [Peridiscus lucidus] 52 7e-05
gb|AAU03312.1| maturase [Ixonanthes chinensis] 52 7e-05
gb|AAU03264.1| maturase [Averrhoa carambola] 52 7e-05
gb|AAU03295.1| maturase [Erythroxylum coca] 52 7e-05
gb|AAU03302.1| maturase [Goupia glabra] 52 7e-05
gb|AAO63609.1| maturase [Schima khasiana] 52 7e-05
gb|AAO63622.1| maturase [Symplocos hookeri] 52 7e-05
gb|AAO63619.1| maturase [Eberhardtia tonkinensis] 52 7e-05
gb|AAQ56256.1| maturase [Aegialitis annulata] 52 7e-05
gb|AAQ08715.1| maturase [Hemiptelea davidii] 52 7e-05
gb|AAQ08760.1| maturase [Styrax grandiflorus] 52 7e-05
gb|AAQ08714.1| maturase [Exochorda racemosa] 52 7e-05
gb|AAQ08657.1| maturase [Thesium chinense] 52 7e-05
gb|AAQ08727.1| maturase [Tetrameles nudiflora] 52 7e-05
gb|AAQ08745.1| maturase [Hypericum ascyron] 52 7e-05
gb|AAQ08644.1| maturase [Prinsepia uniflora] 52 7e-05
gb|AAQ08722.1| maturase [Mappianthus iodoides] 52 7e-05
gb|AAN65190.1| maturase [Geranium wilfordii] 52 7e-05
gb|AAN65193.1| maturase [Parnassia palustris] 52 7e-05
dbj|BAD18280.1| reverse transcriptase-maturase-endonuclease... 52 7e-05
ref|YP_724164.1| Group II intron, maturase-specific [Tricho... 52 7e-05
gb|ABD65331.1| maturase [Lamium sp. Qiu 95019] 51 9e-05
gb|ABD65333.1| maturase [Eucommia ulmoides] 51 9e-05
gb|AAV68283.1| maturase [Tetrastigma leucostaphylum] 51 9e-05
gb|AAU03309.1| maturase [Humiria balsamifera] 51 9e-05
gb|AAU03287.1| maturase [Dicella nucifera] 51 9e-05
gb|AAU03356.1| maturase [Vantanea guianensis] 51 9e-05
gb|AAU03267.1| maturase [Bischofia javanica] 51 9e-05
gb|AAU03352.1| maturase [Thryallis longifolia] 51 9e-05
gb|AAU03286.1| maturase [Dapania racemosa] 51 9e-05
gb|AAO63603.1| maturase [Anneslea fragrans] 51 9e-05
gb|AAO63623.1| maturase [Ternstroemia gymnanthera] 51 9e-05
gb|AAO63617.1| maturase [Eurya handel-mazzettii] >gi|343699... 51 9e-05
gb|AAO63621.1| maturase [Sladenia celastrifolia] 51 9e-05
gb|AAO63606.1| maturase [Cleyera pachyphylla] >gi|34369887|... 51 9e-05
gb|AAO63602.1| maturase [Euryodendron excelsum] 51 9e-05
gb|AAQ08687.1| maturase [Vatica mangachapoi] 51 9e-05
gb|AAQ08658.1| maturase [Tapiscia sinensis] 51 9e-05
gb|AAQ08661.1| maturase [Ailanthus altissima] 51 9e-05
gb|AAQ08693.1| maturase [Hopea hainanensis] 51 9e-05
gb|AAQ08660.1| maturase [Staphylea trifolia] 51 9e-05
gb|AAQ08728.1| maturase [Luffa cylindrica] 51 9e-05
gb|AAQ08691.1| maturase [Bixa orellana] 51 9e-05
gb|AAQ08690.1| maturase [Brucea javanica] 51 9e-05
gb|AAQ08663.1| maturase [Epilobium hirsutum] 51 9e-05
gb|AAQ08667.1| maturase [Acer mono] 51 9e-05
gb|AAF14712.1|AF197720_1 maturase [Cycas revoluta] 51 9e-05
gb|AAF14727.1|AF197735_1 maturase [Croomia pauciflora] 51 9e-05
gb|AAF14765.1|AF197773_1 maturase [Galbulimima belgraveana] 51 9e-05
ref|NP_862680.1| hypothetical protein [Fusarium oxysporum f... 51 9e-05
ref|NP_862333.1| orf1 [Hypocrea lixii] >gi|14030859|gb|AAF8... 51 9e-05
ref|XP_001029081.1| Reverse transcriptase (RNA-dependent DN... 51 9e-05
gb|AAN65199.1| maturase [Stackhousia minima] 51 9e-05
gb|ABD65355.1| maturase [Cercis canadensis] 51 1e-04
gb|AAU03265.1| maturase [Balanops vieillardii] 51 1e-04
gb|AAU03330.1| maturase [Ochna sp. Davis 31-01] 51 1e-04
gb|AAU03261.1| maturase [Archytaea multiflora] 51 1e-04
gb|AAO63614.1| maturase [Actinidia rubricaulis] 51 1e-04
gb|AAO63604.1| maturase [Gordonia lasianthus] 51 1e-04
gb|AAO63601.1| maturase [Stewartia gemmata] >gi|34369881|gb... 51 1e-04
gb|AAO63597.1| maturase [Polyspora tonkinensis] >gi|3436989... 51 1e-04
gb|AAO63611.1| maturase [Parapyrenaria multisepala] 51 1e-04
gb|AAQ56247.1| maturase [Cynometra iripa] 51 1e-04
gb|AAQ08680.1| maturase [Eucommia ulmoides] 51 1e-04
gb|AAQ08696.1| maturase [Carica papaya] 51 1e-04
gb|AAQ08677.1| maturase [Alangium chinense] 51 1e-04
gb|AAQ08720.1| maturase [Leea indica] >gi|33326613|gb|AAQ08... 51 1e-04
gb|AAF14718.1|AF197726_1 maturase [Nuphar sp. Qiu-M114] 51 1e-04
gb|AAF14719.1|AF197727_1 maturase [Nymphaea sp. Qiu91029] 51 1e-04
gb|AAF14734.1|AF197742_1 maturase [Austrobaileya scandens] 51 1e-04
gb|AAN65194.1| maturase [Euonymus bungeanus] 51 1e-04
gb|EAK39434.1| unknown [environmental sequence] 50 2e-04
ref|YP_001023830.1| hypothetical protein [Placozoan sp. BZ2... 50 2e-04
gb|ABD65351.1| maturase [Beaucarnea recurvata] 50 2e-04
ref|XP_001197542.1| PREDICTED: similar to ENSANGP0000002039... 50 2e-04
ref|ZP_01275195.1| reverse transcriptase/maturase family pr... 50 2e-04
gb|AAU03303.1| maturase [Guaiacum sanctum] 50 2e-04
gb|AAU03338.1| maturase [Phyllanthus epiphyllanthus] 50 2e-04
gb|AAU03311.1| maturase [Hypericum empetrifolium] 50 2e-04
gb|AAU03332.1| maturase [Parnassia sp. Wurdack D795] 50 2e-04
gb|AAU03348.1| maturase [Scyphostegia borneensis] 50 2e-04
gb|AAU03285.1| maturase [Ctenolophon englerianus] 50 2e-04
gb|AAQ08709.1| maturase [Picrasma quassioides] 50 2e-04
gb|AAQ08695.1| maturase [Canarium pimela] 50 2e-04
gb|AAQ08685.1| maturase [Bassia scoparia] 50 2e-04
gb|AAQ08726.1| maturase [Aquilaria sinensis] 50 2e-04
gb|AAF14782.1|AF197790_1 maturase [Sargentodoxa cuneata] 50 2e-04
gb|AAF14796.1|AF197804_1 maturase [Cryptocarya meissneriana] 50 2e-04
gb|AAF14745.1|AF197753_1 maturase [Chloranthus multistachys] 50 2e-04
gb|AAP88211.1| maturase [Castanopsis tibetana] 50 2e-04
gb|AAA21548.1| ORF439; matches large ORFs in group II introns 50 2e-04
ref|ZP_01252806.1| prophage LambdaSa1, reverse transcriptas... 50 2e-04
gb|AAU03350.1| maturase [Stackhousia minima] 50 2e-04
gb|AAQ08673.1| maturase [Bretschneidera sinensis] 50 2e-04
gb|AAQ08633.1| maturase [Rhoiptelea chiliantha] 50 2e-04
gb|AAQ08716.1| maturase [Zenia insignis] 50 2e-04
gb|AAQ08683.1| maturase [Nepenthes mirabilis] 50 2e-04
gb|AAQ08627.1| maturase [Cyclocarya paliurus] 50 2e-04
gb|AAQ08692.1| maturase [Tropaeolum majus] 50 2e-04
gb|AAQ08682.1| maturase [Pittosporum glabratum] 50 2e-04
gb|AAF14746.1|AF197754_1 maturase [Sarcandra chloranthoides] 50 2e-04
gb|AAN65198.1| maturase [Tripterococcus brunonis] 50 2e-04
gb|ABD65324.1| maturase [Vriesea splendens] 50 3e-04
gb|ABD65338.1| maturase [Chamaedorea tenella] 50 3e-04
ref|ZP_01631020.1| RNA-directed DNA polymerase [Nodularia s... 50 3e-04
gb|AAU03354.1| maturase [Tripterygium regelii] 50 3e-04
gb|AAU03266.1| maturase [Bergia texana] 50 3e-04
gb|AAU03324.1| maturase [Maytenus arbutifolia] 50 3e-04
gb|AAU03334.1| maturase [Paxistima canbyi] 50 3e-04
gb|AAO63620.1| maturase [Darlingtonia californica] 50 3e-04
gb|AAQ56260.1| maturase [Clerodendrum inerme] 50 3e-04
gb|AAQ56254.1| maturase [Lumnitzera littorea] 50 3e-04
gb|AAQ56251.1| maturase [Xylocarpus granatum] 50 3e-04
gb|AAQ56264.1| maturase [Aegiceras corniculatum] 50 3e-04
gb|AAQ56263.1| maturase [Barringtonia racemosa] 50 3e-04
gb|AAQ08634.1| maturase [Castanea seguinii] 50 3e-04
gb|AAQ08636.1| maturase [Trigonobalanus verticillata] 50 3e-04
gb|AAF14721.1|AF197729_1 maturase [Cabomba sp. Qiu 97027] 50 3e-04
gb|AAD12232.1| putative reverse transcriptase [Fusarium oxy... 50 3e-04
gb|AAF14768.1|AF197776_1 maturase [Cocculus trilobus] 50 3e-04
gb|AAP88210.1| maturase [Quercus multinervis] >gi|33326435|... 50 3e-04
ref|NP_041894.1| PSII 'CP43' polypeptide [Euglena gracilis]... 50 3e-04
gb|ABD65342.1| maturase [Sparganium americanum] 49 4e-04
gb|ABD65326.1| maturase [Lomandra obliqua] 49 4e-04
gb|ABD65330.1| maturase [Xanthorrhoea quadrangulata] 49 4e-04
gb|AAU03269.1| maturase [Bruguiera gymnorrhiza] 49 4e-04
gb|AAU03268.1| maturase [Brexia madagascariensis] 49 4e-04
gb|AAU03293.1| maturase [Elatine triandra] 49 4e-04
gb|AAU03292.1| maturase [Elaeodendron orientale] 49 4e-04
gb|AAU03279.1| maturase [Clusia gundlachii] 49 4e-04
gb|AAN65210.1| maturase [Salacia sessiliflora] 49 4e-04
gb|AAQ56258.1| maturase [Acanthus ebracteatus] 49 4e-04
gb|AAQ08750.1| maturase [Agelaea trinervis] 49 4e-04
gb|AAQ08630.1| maturase [Platycarya strobilacea] 49 4e-04
gb|AAQ08632.1| maturase [Alfaroa guanacastensis] 49 4e-04
gb|AAQ08744.1| maturase [Carallia brachiata] 49 4e-04
gb|AAQ08694.1| maturase [Sida cordata] 49 4e-04
gb|AAQ08639.1| maturase [Oreomunnea mexicana] 49 4e-04
gb|AAF14773.1|AF197781_1 maturase [Drimys winteri] 49 4e-04
gb|AAF14760.1|AF197768_1 maturase [Myristica fragrans] 49 4e-04
gb|AAF14774.1|AF197782_1 maturase [Tasmannia insipida] 49 4e-04
gb|AAP88212.1| maturase [Annamocarya sinensis] 49 4e-04
gb|AAY86058.1| maturase [Takhtajania perrieri] 49 4e-04
ref|YP_101535.1| putative reverse transcriptase [Bacteroide... 49 4e-04
gb|ABD65352.1| maturase [Philydrum lanuginosum] 49 5e-04
gb|ABD65334.1| maturase [Polygonum sp. Qiu 94110] 49 5e-04
gb|AAU03301.1| maturase [Galearia filiformis] 49 5e-04
gb|AAQ08688.1| maturase [Quisqualis indica] 49 5e-04
gb|AAQ08675.1| maturase [Koelreuteria bipinnata] 49 5e-04
gb|AAQ08662.1| maturase [Tilia mandshurica] 49 5e-04
gb|AAQ08618.1| maturase [Alnus henryi] 49 5e-04
gb|AAF14769.1|AF197777_1 maturase [Calycanthus floridus] 49 5e-04
ref|NP_862679.1| hypothetical protein [Fusarium oxysporum f... 49 5e-04
gb|AAF14751.1|AF197759_1 maturase [Ranunculus sp. Qiu95024] 49 5e-04
gb|AAN65195.1| maturase [Celastrus orbiculatus] 49 5e-04
gb|AAP88207.1| maturase [Betula platyphylla] >gi|33326403|g... 49 5e-04
gb|AAP88209.1| maturase [Carpinus betulus] >gi|33326407|gb|... 49 5e-04
gb|AAU03328.1| maturase [Microdesmis puberula] 49 6e-04
gb|AAU03320.1| maturase [Lophopyxis maingayi] 49 6e-04
gb|AAU03349.1| maturase [Stachystemon axillaris] 49 6e-04
gb|AAQ08653.1| maturase [Tamarix chinensis] 49 6e-04
gb|AAQ08622.1| maturase [Ostryopsis davidiana] 49 6e-04
gb|AAF14772.1|AF197780_1 maturase [Sabia sp. Qiu 91025] 49 6e-04
ref|XP_001029085.1| Reverse transcriptase (RNA-dependent DN... 49 6e-04
ref|YP_519544.1| hypothetical protein DSY3311 [Desulfitobac... 49 6e-04
ref|ZP_00590605.1| reverse transcriptase family protein [Pe... 49 6e-04
gb|ABD65332.1| maturase [Iris sp. Qiu 95091] 48 8e-04
gb|AAU03297.1| maturase [Euonymus alatus] 48 8e-04
gb|AAU03271.1| maturase [Carallia brachiata] 48 8e-04
gb|AAQ56262.1| maturase [Scyphiphora hydrophyllacea] 48 8e-04
gb|AAQ08629.1| maturase [Juglans mandshurica] 48 8e-04
gb|AAQ08631.1| maturase [Pterocarya hupehensis] 48 8e-04
gb|AAF14777.1|AF197785_1 maturase [Sarcococca confusa] 48 8e-04
gb|AAF14730.1|AF197738_1 maturase [Kadsura japonica] 48 8e-04
gb|ABD65346.1| maturase [Allium cepa] 48 0.001
ref|ZP_01616594.1| hypothetical protein GP2143_07329 [marin... 48 0.001
gb|ABC98218.1| reverse transcriptase-like protein [Chlamydo... 48 0.001
gb|AAU03274.1| maturase [Celastrus scandens] 48 0.001
gb|AAU03339.1| maturase [Podocalyx loranthoides] 48 0.001
gb|AAQ56244.1| maturase [Rhizophora stylosa] 48 0.001
gb|AAQ56261.1| maturase [Cerbera manghas] 48 0.001
gb|AAQ56248.1| maturase [Hibiscus tiliaceus] 48 0.001
gb|AAQ56259.1| maturase [Dolichandrone spathacea] 48 0.001
gb|AAQ56249.1| maturase [Thespesia populnea] 48 0.001
gb|AAQ08701.1| maturase [Capparis membranifolia] 48 0.001
gb|AAQ08713.1| maturase [Burretiodendron hsienmu] 48 0.001
gb|AAA70324.1| maturase-related protein [Vicia faba] 48 0.001
gb|AAF14770.1|AF197778_1 maturase [Chimonanthus praecox] 48 0.001
gb|AAF14717.1|AF197725_1 maturase [Triglochin maritimum] 48 0.001
gb|AAP88205.1| maturase [Celtis philippensis] 48 0.001
gb|AAP88206.1| maturase [Alnus sinuata] 48 0.001
pir||S27771 RNA-directed DNA polymerase (EC 2.7.7.49) - Afr... 48 0.001
emb|CAA40486.2| Et2.OL ORF1 [Epichloe typhina] 48 0.001
ref|ZP_00863446.1| hypothetical protein BradDRAFT_1059 [Bra... 48 0.001
gb|ABD65337.1| maturase [Smilax sp. Qiu 95117] 47 0.001
gb|AAQ56250.1| maturase [Heritiera littoralis] 47 0.001
gb|AAQ56243.1| maturase [Bruguiera sexangula] 47 0.001
gb|AAQ56253.1| maturase [Conocarpus erectus] 47 0.001
gb|AAQ08748.1| maturase [Cephalotus follicularis] 47 0.001
gb|AAQ08643.1| maturase [Hamamelis japonica f. obtusata] 47 0.001
gb|AAF14757.1|AF197765_1 maturase [Asimina triloba] 47 0.001
gb|AAF14787.1|AF197795_1 maturase [Nelumbo nucifera] 47 0.001
gb|AAF14749.1|AF197757_1 maturase [Canella winterana] 47 0.001
gb|AAY35071.1| maturase R [Santalum album] 47 0.001
gb|AAN71678.1| maturase [Comptonia peregrina] 47 0.001
gb|AAN65196.1| maturase [Dipentodon sinicus] 47 0.001
gb|AAV68279.1| maturase [Cytinus ruber] 47 0.002
gb|AAU03357.1| maturase [Vismia sp. Miller et al. 9313] 47 0.002
gb|AAQ56246.1| maturase [Pongamia pinnata] 47 0.002
gb|AAQ08638.1| maturase [Fagus engleriana] 47 0.002
gb|AAQ08625.1| maturase [Casuarina equisetifolia] 47 0.002
gb|AAF14748.1|AF197756_1 maturase [Hedyosmum arborescens] 47 0.002
gb|AAF14771.1|AF197779_1 maturase [Idiospermum australiense] 47 0.002
ref|YP_406114.1| hypothetical protein SDY_P113 [Shigella dy... 47 0.002
ref|XP_001219708.1| hypothetical protein CHGG_00487 [Chaeto... 47 0.002
gb|ABD65323.1| maturase [Tacca chantieri] 47 0.002
gb|ABD65322.1| maturase [Xanthosoma mafaffa] 47 0.002
gb|ABD65341.1| maturase [Philodendron oxycardium] 47 0.002
gb|AAQ08672.1| maturase [Impatiens auriculata] 47 0.002
gb|AAQ08731.1| maturase [Thermopsis chinensis] 47 0.002
gb|AAQ08704.1| maturase [Withania somnifera] 47 0.002
gb|AAF14789.1|AF197797_1 maturase [Cinnamomum camphora] 47 0.002
ref|YP_125565.1| hypothetical protein lpl0191 [Legionella p... 47 0.002
ref|NP_042571.1| reverse transcriptase-like protein [Chlamy... 47 0.002
ref|ZP_00589294.1| reverse transcriptase [Pelodictyon phaeo... 47 0.002
gb|ABL63816.1| putative retron-type reverse transcriptase [... 46 0.003
ref|ZP_01254489.1| putative reverse transcriptase, fragment... 46 0.003
ref|ZP_01217503.1| hypothetical protein PCNPT3_00010 [Psych... 46 0.003
gb|AAU03351.1| maturase [Tetrastigma dubium] 46 0.003
gb|AAU03275.1| maturase [Cephalotus follicularis] 46 0.003
gb|AAQ56241.1| maturase [Ceriops tagal] 46 0.003
gb|AAQ56242.1| maturase [Kandelia candel] 46 0.003
gb|AAQ56265.1| maturase [Nypa fruticans] 46 0.003
gb|AAQ08640.1| maturase [Morella cerifera] 46 0.003
gb|AAQ08624.1| maturase [Ticodendron incognitum] 46 0.003
gb|AAM28612.1|AF503359_1 maturase [Prosopanche americana] 46 0.003
emb|CAB09634.1| hypothetical protein MLCL581.07c [Mycobacte... 46 0.003
ref|NP_972866.1| reverse transcriptase family protein [Trep... 46 0.003
pir||S51490 chaperone (cpn60) - Pyrenomonas salina 46 0.003
gb|AAQ08706.1| maturase [Lobelia holstii] 46 0.004
gb|AAQ08738.1| maturase [Mesua ferrea] 46 0.004
gb|AAQ08664.1| maturase [Ptelea trifoliata] 46 0.004
gb|AAQ08655.1| maturase [Sedum sarmentosum] 46 0.004
gb|AAY35067.1| maturase R [Cynomorium coccineum] 46 0.004
dbj|BAC57920.1| reverse transcriptase [Anopheles gambiae] 46 0.004
gb|EAD03003.1| unknown [environmental sequence] 45 0.005
emb|CAJ71413.1| conserved hypothetical protein [Candidatus ... 45 0.005
gb|AAF14736.1|AF197744_1 maturase [Tofieldia calyculata] 45 0.005
gb|AAZ15238.1| reverse transcriptase [Caenorhabditis briggsae] 45 0.005
gb|EAF71965.1| unknown [environmental sequence] 45 0.007
gb|AAU03270.1| maturase [Calophyllum soulattri] 45 0.007
gb|AAU03315.1| maturase [Lacistema aggregatum] 45 0.007
gb|AAU03288.1| maturase [Dichapetalum macrocarpum] 45 0.007
gb|AAQ08700.1| maturase [Jacaranda mimosifolia] 45 0.007
gb|AAF14759.1|AF197767_1 maturase [Knema latericia] 45 0.007
gb|AAM28611.1|AF503358_1 maturase [Hydnora africana] 45 0.007
gb|AAF14732.1|AF197740_1 maturase [Illicium floridanum] 45 0.007
gb|AAB04627.1| reverse transcriptase [Chironomus tentans] 45 0.007
emb|CAB99192.1| endonuclease/reverse transcriptase [Drosoph... 45 0.007
ref|ZP_01216116.1| hypothetical protein PCNPT3_06201 [Psych... 45 0.009
gb|AAU03316.1| maturase [Leea guineensis] 45 0.009
gb|AAQ08732.1| maturase [Glycine soja] 45 0.009
gb|AAF14725.1|AF197733_1 maturase [Thottea tomentosa] 45 0.009
gb|AAF14720.1|AF197728_1 maturase [Brasenia schreberi] 45 0.009
gb|AAF14788.1|AF197796_1 maturase [Dicentra sp. Qiu 95026] 45 0.009
gb|AAF14775.1|AF197783_1 maturase [Zygogynum pauciflorum] 45 0.009
gb|AAF14807.1|AF197815_1 maturase [Alisma plantago-aquatica] 45 0.009
gb|AAF14753.1|AF197761_1 maturase [Mahonia bealei] 45 0.009
ref|YP_101536.1| hypothetical protein BF4261 [Bacteroides f... 45 0.009
ref|XP_001226068.1| hypothetical protein CHGG_10801 [Chaeto... 45 0.009
ref|ZP_00515997.1| hypothetical protein CwatDRAFT_3738 [Cro... 45 0.009
gb|AAF14778.1|AF197786_1 maturase [Buxus sempervirens] 44 0.011
gb|AAY86057.1| maturase [Meliosma squamulata] 44 0.011
ref|ZP_01126598.1| prophage LambdaSa1, reverse transcriptas... 44 0.011
ref|XP_001226321.1| hypothetical protein CHGG_08394 [Chaeto... 44 0.011
ref|XP_001225982.1| hypothetical protein CHGG_08326 [Chaeto... 44 0.011
ref|ZP_00799386.1| reverse transcriptase [Alkaliphilus meta... 44 0.011
ref|ZP_01505668.1| reverse transcriptase [Burkholderia phym... 44 0.015
ref|YP_483295.1| hypothetical protein Francci3_4219 [Franki... 44 0.015
gb|AAU03258.1| maturase [Acharia tragodes] 44 0.015
gb|AAQ08725.1| maturase [Cissus quadrangularis] 44 0.015
gb|AAF14795.1|AF197803_1 maturase [Peumus boldus] 44 0.015
gb|AAF14750.1|AF197758_1 maturase [Cinnamodendron ekmanii] 44 0.015
gb|AAP88208.1| maturase [Fagus grandifolia] 44 0.015
gb|AAO66563.1| putative reverse transcriptase [Oryza sativa... 44 0.015
ref|XP_001225939.1| hypothetical protein CHGG_08283 [Chaeto... 44 0.015
ref|XP_001221603.1| hypothetical protein CHGG_05508 [Chaeto... 44 0.015
ref|ZP_01370766.1| conserved hypothetical protein [Desulfit... 44 0.015
gb|AAV68274.1| maturase [Rafflesia pricei] 44 0.019
gb|AAQ08699.1| maturase [Gomphocarpus physocarpus] 44 0.019
gb|AAQ08689.1| maturase [Melastoma candidum] 44 0.019
gb|AAQ08703.1| maturase [Bombax malabaricum] 44 0.019
gb|AAF14747.1|AF197755_1 maturase [Ascarina sp. Qiu-M149] 44 0.019
ref|YP_824729.1| maturase-like protein [Solibacter usitatus... 44 0.019
ref|ZP_00516895.1| hypothetical protein CwatDRAFT_3201 [Cro... 44 0.019
gb|ABD65348.1| maturase [Sterculia balanghas] 43 0.025
gb|ABD65354.1| maturase [Agave attenuata] 43 0.025
gb|ABE90633.1| Reverse transcriptase (RNA-dependent DNA pol... 43 0.025
gb|ABE78657.1| RNA-directed DNA polymerase (Reverse transcr... 43 0.025
gb|AAQ08698.1| maturase [Vinca minor] 43 0.025
gb|AAF14756.1|AF197764_1 maturase [Polyalthia suberosa] 43 0.025
ref|ZP_00798837.1| reverse transcriptase [Alkaliphilus meta... 43 0.025
gb|ABD65358.1| maturase [Blandfordia grandiflora] 43 0.033
gb|AAU83449.1| reverse transcriptase [uncultured archaeon G... 43 0.033
gb|AAU03278.1| maturase [Cissus sicyoides] 43 0.033
gb|AAU03326.1| maturase [Mesua sp. Coode 7884] 43 0.033
gb|AAU03347.1| maturase [Sapria himalayana] 43 0.033
gb|AAQ08620.1| maturase [Ostrya carpinifolia] 43 0.033
gb|AAF14729.1|AF197737_1 maturase [Dioscorea sp. Qiu 94044] 43 0.033
gb|AAF14752.1|AF197760_1 maturase [Xanthorhiza simplicissima] 43 0.033
ref|ZP_01089624.1| group II intron-encoding maturase [Blast... 43 0.033
gb|AAF14714.1|AF197722_1 maturase [Ginkgo biloba] 42 0.043
gb|AAB26437.2| reverse transcriptase homolog [Chironomus th... 42 0.043
dbj|BAC57918.1| reverse transcriptase [Anopheles gambiae] 42 0.043
ref|XP_001228569.1| hypothetical protein CHGG_10642 [Chaeto... 42 0.043
ref|XP_001228719.1| hypothetical protein CHGG_02203 [Chaeto... 42 0.043
gb|AAQ08626.1| maturase [Carya ovata] 42 0.056
gb|AAQ08623.1| maturase [Corylus avellana] 42 0.056
gb|AAF14781.1|AF197789_1 maturase [Lardizabala biternata] 42 0.056
emb|CAD21860.1| H25N7.03 [Trypanosoma brucei] 42 0.056
emb|CAD21861.1| H25N7.04 [Trypanosoma brucei] 42 0.056
gb|AAG50806.1|AC079281_8 unknown protein [Arabidopsis thali... 42 0.056
ref|NP_075000.1| hypothetical protein AsloCp40 [Euglena lon... 42 0.056
dbj|BAC57908.1| reverse transcriptase [Anopheles gambiae] 42 0.056
ref|XP_001229849.1| hypothetical protein CHGG_03333 [Chaeto... 42 0.056
ref|XP_001227969.1| hypothetical protein CHGG_10042 [Chaeto... 42 0.056
gb|EAG17329.1| unknown [environmental sequence] 42 0.073
gb|AAQ08730.1| maturase [Thladiantha dubia] 42 0.073
gb|AAP88020.1|AF355752_1 reverse transcriptase [Chelonia my... 42 0.073
gb|AAC06263.1| pol [Schistosoma mansoni] 42 0.073
dbj|BAC57900.1| reverse transcriptase [Anopheles gambiae] 42 0.073
gb|AAV68269.1| maturase [Pilostyles thurberi] 41 0.096
gb|AAF14798.1|AF197806_1 maturase [Hedycarya arborea] 41 0.096
gb|AAU25927.1| reverse transcriptase [Neurospora intermedia] 41 0.096
gb|AAU25926.1| reverse transcriptase [Neurospora intermedia] 41 0.096
gb|AAA70286.1| unknown protein 41 0.096
ref|NP_041729.1| hypothetical protein [Neurospora crassa] >... 41 0.096
ref|NP_058435.1| hypothetical protein [Neurospora intermedi... 41 0.096
ref|XP_001228513.1| hypothetical protein CHGG_10586 [Chaeto... 41 0.096
ref|ZP_00588516.1| hypothetical protein PphaDRAFT_0611 [Pel... 41 0.096
ref|ZP_01371124.1| putative maturase/reverse transcriptase ... 41 0.096
ref|ZP_00120811.1| COG3344: Retron-type reverse transcripta... 41 0.096
>ref|AP_000911.1| hypothetical protein [Escherichia coli W3110]
ref|NP_414792.2| CP4-6 prophage; conserved protein [Escherichia coli K12]
dbj|BAA77927.2| conserved hypothetical protein [Escherichia coli W3110]
gb|AAC73361.2| CP4-6 prophage; conserved protein [Escherichia coli K12]
Length = 381
Score = 741 bits (1913), Expect = 0.0
Identities = 369/369 (100%), Positives = 369/369 (100%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM 60
MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM
Sbjct: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM 60
Query: 61 LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME
Sbjct: 61 LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
Query: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM
Sbjct: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
Query: 181 KAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH 240
KAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH
Sbjct: 181 KAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH 240
Query: 241 ERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAI 300
ERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAI
Sbjct: 241 ERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAI 300
Query: 301 REECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARN 360
REECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARN
Sbjct: 301 REECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARN 360
Query: 361 FAASLTALL 369
FAASLTALL
Sbjct: 361 FAASLTALL 369
>sp|Q47688|YKFC_ECOLI Hypothetical protein ykfC
gb|AAB08678.1| hypothetical protein [Escherichia coli]
Length = 376
Score = 733 bits (1891), Expect = 0.0
Identities = 364/364 (100%), Positives = 364/364 (100%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>gb|ABG56818.1| putative truncated reverse transcriptase [Klebsiella pneumoniae]
Length = 400
Score = 727 bits (1877), Expect = 0.0
Identities = 361/364 (99%), Positives = 362/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|NP_708749.1| reverse transcriptase-like protein [Shigella flexneri 2a str. 301]
gb|AAN44456.1| reverse transcriptase-like protein [Shigella flexneri 2a str. 301]
Length = 502
Score = 727 bits (1877), Expect = 0.0
Identities = 361/364 (99%), Positives = 362/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|ZP_00702246.1| COG3344: Retron-type reverse transcriptase [Escherichia coli
E24377A]
Length = 502
Score = 727 bits (1877), Expect = 0.0
Identities = 361/364 (99%), Positives = 362/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|ZP_00720744.1| COG3344: Retron-type reverse transcriptase [Escherichia coli F11]
ref|YP_538636.1| hypothetical protein UTI89_P037 [Escherichia coli UTI89]
gb|ABE10613.1| conserved hypothetical protein [Escherichia coli UTI89]
Length = 502
Score = 727 bits (1877), Expect = 0.0
Identities = 361/364 (99%), Positives = 362/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|NP_053121.1| hypothetical protein pB171_059 [Escherichia coli]
ref|ZP_00702259.1| COG3344: Retron-type reverse transcriptase [Escherichia coli
E24377A]
ref|ZP_00708315.1| COG3344: Retron-type reverse transcriptase [Escherichia coli B171]
ref|ZP_00712220.1| COG3344: Retron-type reverse transcriptase [Escherichia coli B171]
ref|YP_424874.1| group II intron-encoded reverse transcriptase/maturase [Escherichia
coli]
dbj|BAA84894.1| orf59 [Escherichia coli]
emb|CAI79565.1| group II intron-encoded reverse transcriptase/maturase [Escherichia
coli]
Length = 502
Score = 726 bits (1873), Expect = 0.0
Identities = 360/364 (98%), Positives = 361/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWA TDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAVTDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|ZP_00700969.1| COG3344: Retron-type reverse transcriptase [Escherichia coli
E24377A]
Length = 502
Score = 725 bits (1872), Expect = 0.0
Identities = 361/364 (99%), Positives = 361/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE YLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHELYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>ref|ZP_00712213.1| COG3344: Retron-type reverse transcriptase [Escherichia coli B171]
Length = 502
Score = 725 bits (1871), Expect = 0.0
Identities = 359/364 (98%), Positives = 361/364 (99%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWA TDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAVTDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIF+GHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFMGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>gb|AAB86996.1| reverse transcriptase-like protein [Shigella flexneri]
Length = 431
Score = 722 bits (1864), Expect = 0.0
Identities = 359/364 (98%), Positives = 360/364 (98%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLS HYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIW S
Sbjct: 61 AVELQILRDELLSXHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWXS 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 245
RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS 240
Query: 246 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECR 305
GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EAIREECR
Sbjct: 241 GKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECR 300
Query: 306 GVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASL 365
GVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVVSTIPQEKARNFAASL
Sbjct: 301 GVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASL 360
Query: 366 TALL 369
TALL
Sbjct: 361 TALL 364
>dbj|BAA22287.1| Reverse transcriptase like protein [Escherichia coli]
Length = 322
Score = 627 bits (1616), Expect = e-178
Identities = 310/310 (100%), Positives = 310/310 (100%)
Query: 60 MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM
Sbjct: 1 MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 60
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL
Sbjct: 61 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 120
Query: 180 MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL 239
MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL
Sbjct: 121 MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL 180
Query: 240 HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEA 299
HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEA
Sbjct: 181 HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEA 240
Query: 300 IREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR 359
IREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR
Sbjct: 241 IREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR 300
Query: 360 NFAASLTALL 369
NFAASLTALL
Sbjct: 301 NFAASLTALL 310
>dbj|BAA22286.1| Reverse transcriptase like protein [Escherichia coli]
Length = 448
Score = 622 bits (1604), Expect = e-176
Identities = 308/310 (99%), Positives = 308/310 (99%)
Query: 60 MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM
Sbjct: 1 MLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 60
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL
Sbjct: 61 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 120
Query: 180 MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL 239
MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL
Sbjct: 121 MKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL 180
Query: 240 HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEA 299
HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQ EA
Sbjct: 181 HERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEA 240
Query: 300 IREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR 359
IREECRGVLEGSLKLRLNMDKTKI HVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR
Sbjct: 241 IREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKAR 300
Query: 360 NFAASLTALL 369
NFAASLTALL
Sbjct: 301 NFAASLTALL 310
>ref|NP_838466.1| reverse transcriptase-like protein [Shigella flexneri 2a str.
2457T]
gb|AAP18276.1| reverse transcriptase-like protein [Shigella flexneri 2a str.
2457T]
Length = 226
Score = 418 bits (1074), Expect = e-115
Identities = 208/208 (100%), Positives = 208/208 (100%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL
Sbjct: 1 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES
Sbjct: 61 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 185
DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR
Sbjct: 121 DFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRR 180
Query: 186 RISDARFMTLLWKTIKAGHIDVGLFRAA 213
RISDARFMTLLWKTIKAGHIDVGLFRAA
Sbjct: 181 RISDARFMTLLWKTIKAGHIDVGLFRAA 208
>ref|NP_838465.1| reverse transcriptase-like protein [Shigella flexneri 2a str.
2457T]
gb|AAP18275.1| reverse transcriptase-like protein [Shigella flexneri 2a str.
2457T]
Length = 277
Score = 281 bits (719), Expect = 4e-74
Identities = 136/139 (97%), Positives = 137/139 (98%)
Query: 231 MLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 290
MLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV
Sbjct: 1 MLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 60
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVV 350
KGTKAQ EAIREECRGVLEGSLKLRLNMDKTKI HVNDGFIFLGHR+IRKRSRYGEMRVV
Sbjct: 61 KGTKAQAEAIREECRGVLEGSLKLRLNMDKTKITHVNDGFIFLGHRIIRKRSRYGEMRVV 120
Query: 351 STIPQEKARNFAASLTALL 369
STIPQEKARNFAASLTALL
Sbjct: 121 STIPQEKARNFAASLTALL 139
>ref|NP_395421.1| reverse transcriptase [Yersinia pestis CO92]
ref|NP_995560.1| hypothetical protein YP_pMT120 [Yersinia pestis biovar Microtus
str. 91001]
ref|YP_094000.1| hypothetical protein pG8786_121 [Yersinia pestis]
gb|AAC82728.1| unknown [Yersinia pestis KIM]
emb|CAB55257.1| hypothetical protein YPMT1.75c [Yersinia pestis CO92]
gb|AAS58751.1| hypothetical protein YP_pMT120 [Yersinia pestis biovar Microtus
str. 91001]
emb|CAG27527.1| hypothetical protein [Yersinia pestis]
Length = 156
Score = 269 bits (687), Expect = 2e-70
Identities = 134/144 (93%), Positives = 137/144 (95%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM 60
MIISEMQRKLATWAATDP R++RLLRLITQPEWLAEAARITL+SKGAHTPGVDGVNKT
Sbjct: 1 MIISEMQRKLATWAATDPPRRVERLLRLITQPEWLAEAARITLASKGAHTPGVDGVNKTT 60
Query: 61 LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
LQARLA ELQILRDELLSG YQPLPARRVYIPKSNGK RPLGIP LRDRIVQRAMLMAME
Sbjct: 61 LQARLAAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLGIPTLRDRIVQRAMLMAME 120
Query: 121 PIWESDFHTLSYGFRPERSVHHAI 144
PIWESDFHTLSYGFRPERSVHHAI
Sbjct: 121 PIWESDFHTLSYGFRPERSVHHAI 144
>ref|NP_857704.1| reverse transcriptase-like protein [Yersinia pestis KIM]
ref|NP_857851.2| hypothetical protein Y1068.S [Yersinia pestis KIM]
ref|YP_636763.1| hypothetical protein YPA_MT0074 [Yersinia pestis Antiqua]
ref|YP_636655.1| hypothetical protein YPN_MT0078 [Yersinia pestis Nepal516]
gb|AAC13232.1| reverse transcriptase-like protein [Yersinia pestis KIM]
gb|ABG20392.1| hypothetical protein YPN_MT0078 [Yersinia pestis Nepal516]
gb|ABG16210.1| hypothetical protein YPA_MT0074 [Yersinia pestis Antiqua]
Length = 151
Score = 260 bits (665), Expect = 8e-68
Identities = 129/139 (92%), Positives = 132/139 (94%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQRKLATWAATDP R++RLLRLITQPEWLAEAARITL+SKGAHTPGVDGVNKT LQARL
Sbjct: 1 MQRKLATWAATDPPRRVERLLRLITQPEWLAEAARITLASKGAHTPGVDGVNKTTLQARL 60
Query: 66 AVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWES 125
A ELQILRDELLSG YQPLPARRVYIPKSNGK RPLGIP LRDRIVQRAMLMAMEPIWES
Sbjct: 61 AAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLGIPTLRDRIVQRAMLMAMEPIWES 120
Query: 126 DFHTLSYGFRPERSVHHAI 144
DFHTLSYGFRPERSVHHAI
Sbjct: 121 DFHTLSYGFRPERSVHHAI 139
>ref|YP_708542.1| RNA-directed DNA polymerase [Rhodococcus sp. RHA1]
gb|ABH00384.1| RNA-directed DNA polymerase [Rhodococcus sp. RHA1]
Length = 464
Score = 213 bits (541), Expect = 2e-53
Identities = 132/346 (38%), Positives = 189/346 (54%), Gaps = 27/346 (7%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARL 65
MQ KL WAA D R L + P L A + GA TPGVDG+ ++A +
Sbjct: 1 MQAKLHHWAAADSGRRFDDLFNFVHDPATLRVAFERVAGNTGAKTPGVDGMTVADVEASV 60
Query: 66 AVE--LQILRDELLSGHYQPLPARRVYIPK--SNGKLRPLGIPALRDRIVQRAMLMAMEP 121
+ L LR +L G ++PLP R IPK +GK+R LGIP + DR+VQ A+ + +EP
Sbjct: 61 GMSGFLDDLRTQLKDGSFRPLPVRERKIPKPGGSGKVRKLGIPTVADRVVQAALKLVLEP 120
Query: 122 IWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMK 181
I+E+DF +SYGFRP+R H A+ ++ G RWV++ D+ + FD++ H LM
Sbjct: 121 IFEADFLPVSYGFRPKRRAHDAVAEIQY----FGTKGYRWVLDADIEACFDSIEHTALMG 176
Query: 182 AVRRRISDARFMTLLWKTIKAGHI-DVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH 240
VR R+ D R + L+ +KAG + + G G PQGG++SPLL+NI L+ D+++H
Sbjct: 177 RVRERVKDKRVLLLVKSFLKAGVMSETGHHEDNPTGTPQGGILSPLLANIALSVLDEHVH 236
Query: 241 ERYLSGKARKDRWYWNNSIQRGRSTAVRE---NWQWKPAVAYCRYADDFVLIVKGTKAQV 297
+ G A S GR+ R NW+ RYADDFV++V G+ V
Sbjct: 237 GPWQPGGAM--------STPTGRALRRRRGLPNWR------IVRYADDFVVLVFGSCDDV 282
Query: 298 EAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
+REE V+ L LR + KT++ H+ +GF FLG RL KR +
Sbjct: 283 NDLREEIADVI-APLGLRFSESKTRVVHMGEGFDFLGFRLQWKRKK 327
>ref|ZP_01429758.1| RNA-directed DNA polymerase [Salinispora tropica CNB-440]
gb|EAU23518.1| RNA-directed DNA polymerase [Salinispora tropica CNB-440]
Length = 488
Score = 211 bits (538), Expect = 4e-53
Identities = 136/372 (36%), Positives = 202/372 (54%), Gaps = 22/372 (5%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
++EMQ KL WAA P R L L+ P L A + GA T GVDG+ ++
Sbjct: 22 VAEMQAKLHRWAAAGPGRRFDDLFNLVHDPATLLVAYSRVAGNLGARTAGVDGMTVADVE 81
Query: 63 ARLAVE--LQILRDELLSGHYQPLPARRVYIPK--SNGKLRPLGIPALRDRIVQRAMLMA 118
+ V L LR ++ +G ++PLP R IPK +GK+R LGIP + DR+VQ A+ +
Sbjct: 82 RHIGVPGFLDDLRVQVKTGTFRPLPVRERKIPKPGGSGKVRRLGIPTVADRVVQAALKLV 141
Query: 119 MEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRL 178
+EPI+E+DF +SYGFRP+R AI + G RWV++ D+ + FD++ H
Sbjct: 142 LEPIFEADFLPVSYGFRPKRRAQDAIAEIHYY----GTHGYRWVLDADIEACFDSIDHVA 197
Query: 179 LMKAVRRRISDARFMTLLWKTIKAGHI-DVGLFRAASEGVPQGGVISPLLSNIMLNEFDQ 237
LM VR RI D R +TL+ +KAG + ++G R G PQGG++SPLL+NI L D+
Sbjct: 198 LMDRVRTRIKDKRVLTLVKAFLKAGILTELGDRRDTHTGTPQGGILSPLLANIALTVLDE 257
Query: 238 YLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQV 297
+L + + +RG +T W+ RYADDFV++V G +
Sbjct: 258 HLMAGWRPDATMASEYRRAQLRKRGEAT-------WR----LVRYADDFVVLVHGGEDHA 306
Query: 298 EAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR-YGEMRVVSTIPQE 356
+A+RE+ +L L LRL+ KT++ H++DGF FLG + +R R + V + I +
Sbjct: 307 QALREDVATML-APLGLRLSPAKTRVVHLSDGFDFLGFHIQWRRKRGTNKWHVYTFIAKR 365
Query: 357 KARNFAASLTAL 368
R+ A + AL
Sbjct: 366 PIRSLKAKVRAL 377
>ref|ZP_01424882.1| RNA-directed DNA polymerase [Herpetosiphon aurantiacus ATCC 23779]
gb|EAU18350.1| RNA-directed DNA polymerase [Herpetosiphon aurantiacus ATCC 23779]
Length = 587
Score = 207 bits (528), Expect = 6e-52
Identities = 119/321 (37%), Positives = 179/321 (55%), Gaps = 29/321 (9%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVE--LQILRDELLSGHY 81
R+ L+ A LS+ GA T G+DG+ K + + +Q + +L + Y
Sbjct: 36 RVFNLMRTRRLATVALNRVLSNTGARTAGIDGMTKKHIATDTEQQALVQEIWHDLTTHQY 95
Query: 82 QPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVH 141
+P P RRVYIPK+NG+ RPLGIP ++DR+VQ + + ++PI+ES F+ SYGFRP R+ H
Sbjct: 96 RPAPVRRVYIPKANGQQRPLGIPTIKDRVVQEMVRLILDPIYESTFYRHSYGFRPYRATH 155
Query: 142 HAIRTVKLQLTDCGETRG-RWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTI 200
HA+ ++L D RG + +EGD+ + FD +HH L++ +RR I D R +T++ + +
Sbjct: 156 HAV----VRLRDLIGRRGYQMALEGDIRACFDRIHHTTLIRILRRTIKDERLITVIHQML 211
Query: 201 KAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQ 260
KAG +D G +R +G PQGG++SPLL+NI LNE DQ++ R W+
Sbjct: 212 KAGVMDDGQWRVTEDGTPQGGIVSPLLANIYLNELDQWVANR------------WDT--- 256
Query: 261 RGRSTAVRENWQWKPAVAY----CRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRL 316
T + + K Y RYADDFV+++ GT A+ ++ L L L L
Sbjct: 257 ---YTPLERYYHRKAGTGYPCQITRYADDFVVLLHGTHAEATTLKTALATFLADHLHLEL 313
Query: 317 NMDKTKIPHVNDGFIFLGHRL 337
+ +KT I V GF FLG +
Sbjct: 314 SAEKTLITPVEQGFDFLGFHI 334
>ref|ZP_00874799.1| RNA-directed DNA polymerase [Streptococcus suis 89/1591]
gb|EAP41008.1| RNA-directed DNA polymerase [Streptococcus suis 89/1591]
Length = 603
Score = 202 bits (514), Expect = 2e-50
Identities = 126/361 (34%), Positives = 193/361 (53%), Gaps = 44/361 (12%)
Query: 17 DPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVN-KTMLQARLAVELQILRDE 75
D + + +RL RL+ E A + ++ G TPGVD + M AR+ + L+DE
Sbjct: 17 DKNYQFERLYRLLYNKEMYLVAYQTIYANPGHMTPGVDELTIDGMSMARIDQLIDSLKDE 76
Query: 76 LLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFR 135
YQP P+RR YIPK NGK RPLGIP+ D+++Q+ + M +E I+E F + S+GFR
Sbjct: 77 ----SYQPHPSRRTYIPKKNGKPRPLGIPSFDDKLLQQVIKMILESIYEGQFESSSHGFR 132
Query: 136 PERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTL 195
P +S H A+ ++ T +W IEGD+ S+FD ++H ++++ +R RI+D RF+ L
Sbjct: 133 PNKSCHSALTQIQKTYTGV-----KWFIEGDIKSFFDNINHDVIIQILRERITDERFLRL 187
Query: 196 LWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSGKARK-D 251
+ K + AG+++ F G PQGG+ISP+L+NI L++FD+Y+ + + GK RK
Sbjct: 188 IRKFLNAGYVEDWKFYKTYSGTPQGGIISPILANIYLDKFDKYMTDYVKNFCEGKYRKRT 247
Query: 252 RWYWNNSIQRG--------------RSTAVRENWQWK----------------PAVAYCR 281
Y N I G R A++ Q + + Y R
Sbjct: 248 PEYRQNEIALGKARRTLECTSTENQRQEAIQRIRQLEKERVLIPHSDPMDSSFKRLTYTR 307
Query: 282 YADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKR 341
YADDF+ V G+K I+ + + LE LKL L+ +KT I + D FLG+ L ++
Sbjct: 308 YADDFICGVIGSKEDARRIKADIKDYLETVLKLELSEEKTLITNARDKARFLGYHLYIRQ 367
Query: 342 S 342
S
Sbjct: 368 S 368
>ref|ZP_01171048.1| putative maturase/reverse transcriptase [Bacillus sp. NRRL B-14911]
gb|EAR66136.1| putative maturase/reverse transcriptase [Bacillus sp. NRRL B-14911]
Length = 607
Score = 199 bits (506), Expect = 2e-49
Identities = 125/358 (34%), Positives = 186/358 (51%), Gaps = 47/358 (13%)
Query: 16 TDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDE 75
T +I+RL R + E+ A S +G T GVD + + + ++ L +
Sbjct: 16 TRDDYKIRRLYRNLYNAEFYLIAYSKVYSKEGNMTKGVDEITIDGMSLK---RIENLIES 72
Query: 76 LLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFR 135
L YQP P+RRVYIPK NG RPLGIP+ D+++Q + M +E I+E +F S+GFR
Sbjct: 73 LKDYSYQPKPSRRVYIPKKNGGKRPLGIPSFEDKLLQEVVRMILESIYEPNFSDRSHGFR 132
Query: 136 PERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTL 195
P RS H A+ VK + T +W IEGD+ +FD + H L+ ++R+I D F+ L
Sbjct: 133 PARSCHTALTQVKERFTGA-----KWFIEGDIKGFFDNIDHHTLIAILKRKIEDEAFINL 187
Query: 196 LWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLS----GKARKD 251
+WK +KAG+++ + G PQGG+ISP+LSNI LNE D+++ E+Y + GKARK
Sbjct: 188 IWKFLKAGYMEEWQYHKTYSGTPQGGIISPILSNIYLNELDRFI-EKYKAGFDKGKARKR 246
Query: 252 -RWY-----------------WNNSIQRGRSTA------VRENWQWKP----------AV 277
R Y W + + TA ++ + P +
Sbjct: 247 LREYRTREMRLSRAKKKYGEKWTELDEEEKETARLHVKSLKNHMMELPYKDPMDDGYKRL 306
Query: 278 AYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGH 335
Y RYADDF++ V G+K + I+ + LE LK+ L+ +KT I H D FLG+
Sbjct: 307 QYTRYADDFLIGVIGSKEDCQIIKRDLTNFLENELKIELSQEKTLITHSKDRARFLGY 364
>ref|NP_436278.1| Putative reverse transcriptase [Sinorhizobium meliloti 1021]
gb|AAK65690.1| Putative reverse transcriptase [Sinorhizobium meliloti 1021]
Length = 505
Score = 196 bits (498), Expect = 2e-48
Identities = 132/370 (35%), Positives = 196/370 (52%), Gaps = 20/370 (5%)
Query: 6 MQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVN----KTML 61
+QRKL W+ +P + + + +T L A + S+KG T GVDG+ +
Sbjct: 15 IQRKLYQWSKANPDDQWRDMWGWLTDLRVLRHAWQRVASNKGGRTAGVDGMTVGRIRNRS 74
Query: 62 QARLAVELQILRDELLSGHYQPLPARRVYIPKSN--GKLRPLGIPALRDRIVQRAMLMAM 119
+ R V+LQ +L SG Y+P PARR IPK+ G+ RPLGIP +RDR+VQ A + +
Sbjct: 75 EHRFLVDLQA---DLRSGAYRPSPARRKLIPKAGKPGQFRPLGIPTIRDRVVQGAAKILL 131
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKL----QLTDCGETRGR----WVIEGDLSSYF 171
EPI+E+ F +SYGFRP R+ H A+ ++ Q D R R WVIEGD+ F
Sbjct: 132 EPIFEAQFWHVSYGFRPGRNTHGALEYIRRAALPQKRDEDTRRNRLPYPWVIEGDIKGCF 191
Query: 172 DTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIM 231
D ++H L++ +R+RI D R + L+ +KAG + F G PQGG+ISPLL+NI
Sbjct: 192 DNINHHHLLERMRKRIGDRRVVRLVGLFLKAGVLTEDQFLRTDAGTPQGGIISPLLANIA 251
Query: 232 LNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVK 291
L+ ++ +ER+ + + +N + S + + RYADDFV++V
Sbjct: 252 LSAIEE-RYERWTYHRKKTQARRKSNGVAAAASARDSDRIAGRCVYLPVRYADDFVVLVS 310
Query: 292 GTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL-IRKRSRYGEMRVV 350
G+ + A + L + L L +KTK+ + +GF FLG R + RYG V
Sbjct: 311 GSLEEAMAEKSALADYLIKTTGLTLLPEKTKVTAMTEGFEFLGFRFSVHWDKRYGYGPRV 370
Query: 351 STIPQEKARN 360
IP+ KA N
Sbjct: 371 E-IPKAKAAN 379
>emb|CAA38781.1| reverse transcriptase homologue COI iA grp II protein [Podospora
anserina]
Length = 790
Score = 195 bits (496), Expect = 3e-48
Identities = 130/356 (36%), Positives = 193/356 (54%), Gaps = 41/356 (11%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPL 84
L +LI + L +A R S+ G TP +D + + +L + EL S ++
Sbjct: 197 LYQLICSKDLLIQAYRNVRSNPGGMTPSIDNITYDGINDEFLEKLIL---ELKSERFKFT 253
Query: 85 PARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAI 144
+RVYIPK+NGK RPLGIP +D+IVQ AM + +E I+E F +S+GFRP+RS H A+
Sbjct: 254 SVKRVYIPKANGKTRPLGIPTSKDKIVQEAMKILLELIYEPIFLDVSHGFRPKRSCHTAL 313
Query: 145 RTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGH 204
Q++ T W++EGD+ +F+ V H++L+K + ++I D RF LLWK +AG+
Sbjct: 314 H----QISKWNGTT--WMLEGDIKGFFNEVDHQVLIKILEKKIKDQRFFDLLWKLFRAGY 367
Query: 205 IDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY---LHERYLSGK-------------- 247
ID G+ GVPQGGVISP+LSNI L+EFD + L ++Y S K
Sbjct: 368 IDDGVKYNTYTGVPQGGVISPVLSNIYLHEFDLFVETLIKKYSSEKDFISKVNPVIVKYS 427
Query: 248 -----------ARKDRWYWNNSIQ-RGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKA 295
KD+ I+ R + + V Y RYADD+V+ + G +
Sbjct: 428 SKLSRLNDEYQTTKDKEILKEIIKLRAERNKLPSRIRNGIRVRYTRYADDWVIGIIGDQE 487
Query: 296 QVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFI-FLGHRLIRKRSRYGEMRVV 350
V I+EEC+ L LKL L+ +KTKI ++ + + FLG + RK S GE +++
Sbjct: 488 LVAKIKEECKAFLRDILKLELSEEKTKITNITEKEVRFLGVDIKRKDS--GESKII 541
>ref|YP_865894.1| RNA-directed DNA polymerase (Reverse transcriptase) [Magnetococcus
sp. MC-1]
gb|ABK44488.1| RNA-directed DNA polymerase (Reverse transcriptase) [Magnetococcus
sp. MC-1]
Length = 433
Score = 191 bits (486), Expect = 4e-47
Identities = 130/362 (35%), Positives = 198/362 (54%), Gaps = 44/362 (12%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVN-KTML 61
+ +++RK+ A D S R L + +PE L A + +KGA PG+DGV + +
Sbjct: 8 LQDLRRKIYRKAKIDKSWRFWGLYHHVCKPETLNTAYEMARKNKGA--PGIDGVTFEAIE 65
Query: 62 QARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEP 121
++ + L +R EL+SG Y+PL RR IPK +GK R LGIP++RDR+VQ A+ + +EP
Sbjct: 66 ESGVEQFLGEVRKELVSGSYRPLKNRRKAIPKGDGKERVLGIPSIRDRVVQGALKLILEP 125
Query: 122 IWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMK 181
I+E+DF + SYG+RP+R H A+ V + + G+T+ VI+ DL SYFDTV H L ++
Sbjct: 126 IFEADFQSGSYGYRPKRMAHQAVNRVAIAIAQ-GKTQ---VIDADLKSYFDTVQHDLALR 181
Query: 182 AVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE 241
V R+ D + M LL K + GVPQGGVISPL+SN+ LNE D+ L
Sbjct: 182 KVSERVDDDQVMHLLKLIFKT---------SGKRGVPQGGVISPLISNLYLNEVDKMLER 232
Query: 242 RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIR 301
++G+ T + Y R+ADD V++V G R
Sbjct: 233 A-------------KEVTRKGKYTHIE----------YARFADDLVILVDGHHRWNGLAR 269
Query: 302 EECRGVLE--GSLKLRLNMDKTKIPHVNDG--FIFLGHRLIRKRSRYGEMRVVSTIPQEK 357
+ + + E LK++LN++KT++ + G F FLG + ++ + G+ V+ IP+ K
Sbjct: 270 KVYQRLGEELAKLKVQLNLEKTRVVDLTRGEDFTFLGFNIRQRMTLQGKQGVL-CIPRMK 328
Query: 358 AR 359
AR
Sbjct: 329 AR 330
>emb|CAB61571.1| cox1I1a maturase [Schizosaccharomyces pombe]
Length = 787
Score = 190 bits (483), Expect = 1e-46
Identities = 125/380 (32%), Positives = 200/380 (52%), Gaps = 50/380 (13%)
Query: 28 LITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPAR 87
L+ + ++A +I+ S+KG+ T G+D K L E++ ++L +Q PAR
Sbjct: 203 LLNEDLFIAAYQKIS-SNKGSVTAGID---KITLDGYSINEIKKTIEQLKDHSFQFKPAR 258
Query: 88 RVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTV 147
R YIPK+NGKLRPLGIP+ RD+IVQ+ M+ +E I+E F S GFRP + H A++++
Sbjct: 259 REYIPKANGKLRPLGIPSPRDKIVQQVMVFVLESIFEQKFLDCSNGFRPNKGTHTALKSI 318
Query: 148 KLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDV 207
G WVIEGD+ SYFD + H+ L+ + I+D F+ L WK I+AG+++V
Sbjct: 319 ------AGWKALDWVIEGDIKSYFDLIDHQTLISLLSNVINDKEFIDLCWKAIRAGYVEV 372
Query: 208 GLFRAASE--GVPQGGVISPLLSNIMLNEFDQYLHER----------------------- 242
+ + G PQG V+SP+L+NI L+EFD+++ E+
Sbjct: 373 KMNKKIDTIIGTPQGSVLSPILANIYLHEFDKFMMEKVNLSLDSGSTSKRFKPYRLLEAK 432
Query: 243 --YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKP------AVAYCRYADDFVLIVKGTK 294
Y+ RK+ N ++ + + N + Y RYADDF++ + G +
Sbjct: 433 INYIYQLERKNGSLTNEQVKSLKKLTIERNKLPSTIGGPGYRIYYVRYADDFLIGINGKR 492
Query: 295 AQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGF-IFLGHRLIRKRSRYGEMRVVSTI 353
++ E L +LKL ++++KTK+ ++ D + +FLG + R SR +V+S
Sbjct: 493 TLALQLKSEINEFLTNTLKLTMSVEKTKVTNIKDDYALFLGAEIHRLTSRNNNSKVIS-- 550
Query: 354 PQEKARNF----AASLTALL 369
Q + NF A S T+LL
Sbjct: 551 KQYSSGNFNSRVANSRTSLL 570
>gb|AAS83509.1| MatR [Bacteroides fragilis]
Length = 599
Score = 190 bits (482), Expect = 1e-46
Identities = 117/360 (32%), Positives = 184/360 (51%), Gaps = 42/360 (11%)
Query: 17 DPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDEL 76
+P+ + +RL RL+ A A ++ G T G DG + + + +Q + D+L
Sbjct: 17 NPNYKFERLYRLLFNENLYALAYQMMSKKTGNMTKGTDGQTISGMSIK---RIQSIIDKL 73
Query: 77 LSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRP 136
YQP PA+R+YIPK NGK RPLGIP+ D++VQ+ + M +E I+E F S+GFRP
Sbjct: 74 RDESYQPHPAKRIYIPKKNGKQRPLGIPSFEDKLVQKVIQMILESIYEGSFEKCSHGFRP 133
Query: 137 ERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLL 196
R+ H A+ ++ G RW IEGD+ +FD + H +++ + RI+D RF+ L+
Sbjct: 134 HRNCHTAMASIME-----GFDGTRWFIEGDIKGFFDNIDHDIMITILSERIADERFLRLI 188
Query: 197 WKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSGKARKDRW 253
K + AG+++ F G PQGG+ISP+L+NI L++ D+Y+ E ++ GK RK
Sbjct: 189 RKFLNAGYLEKWKFHKTFSGTPQGGIISPILANIYLDQLDKYVVEYISQFNRGKMRKRNP 248
Query: 254 YW---------------------NNSIQRGRSTAVRENWQWKPA----------VAYCRY 282
+ + R + Q PA + Y RY
Sbjct: 249 EYKRIASRKDKRVKKLKTETDEQKRAALRSEIVELHREMQKHPATLDMDEDFRRMRYVRY 308
Query: 283 ADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRS 342
ADDF++ + G+K I+ + + L LKL L+ +KT I H +D FLG + ++S
Sbjct: 309 ADDFLIGIIGSKDDCVNIKADIKRFLCEKLKLELSDEKTLITHGHDHAKFLGFEVTIRKS 368
>ref|ZP_01371125.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Desulfitobacterium hafniense DCB-2]
gb|EAT52021.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Desulfitobacterium hafniense DCB-2]
Length = 607
Score = 190 bits (482), Expect = 1e-46
Identities = 127/386 (32%), Positives = 194/386 (50%), Gaps = 57/386 (14%)
Query: 21 RIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGH 80
R +RL R + P++ A + ++ GA TPGVD +T L ++ L L +
Sbjct: 21 RFERLYRNLYNPDFYLLAYQKLYANNGAMTPGVD---RTTLDGTGMERIESLIQSLKNRS 77
Query: 81 YQPLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERS 139
YQP PARR YIPK +GK RPLGI A D++VQ + M +E I+E F S+GFRP RS
Sbjct: 78 YQPQPARRRYIPKKSGKGQRPLGIQAANDKLVQEVVRMLLESIYEPTFLDSSHGFRPNRS 137
Query: 140 VHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKT 199
H A+ ++ +W +EGD+ +YFDT+ H +L+ +RRRI D F++L+WK
Sbjct: 138 CHTALARMQRSFNGV-----KWFVEGDIKAYFDTIDHHMLVNILRRRIQDENFISLIWKF 192
Query: 200 IKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSG---------- 246
++AG+++ + A G PQG SPLL+N+ L+E D Y+ E R+ G
Sbjct: 193 LRAGYLEDWQYNATYSGSPQGSGASPLLANLYLHELDLYMEEYKQRFDKGNRRQAGKDYG 252
Query: 247 ---------KARKDRWYWNNSIQRGRST-----AVRENWQWKPA----------VAYCRY 282
K + DR + + + ++ A+R+ PA + Y RY
Sbjct: 253 RAQRTHQYRKVKYDRLWLTLTDEEKKAAQREIRALRKRMLECPANDPMDGTYRRIQYVRY 312
Query: 283 ADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGH------- 335
DDF++ + G+K E ++ + L LKL L+ +KT I H D FLG+
Sbjct: 313 CDDFLVGIIGSKTDAEKVKADICRFLSDKLKLTLSPEKTLITHGQDKARFLGYDIAVCQD 372
Query: 336 ----RLIRKRSRYGEMRVVSTIPQEK 357
R R +SR +V +P++K
Sbjct: 373 NTTRRTSRGQSRVHSGKVKLYVPKDK 398
>ref|NP_049088.1| groupII intron-associated maturase [Novosphingobium
aromaticivorans]
ref|YP_497468.1| RNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
gb|AAD03884.1| groupII intron-associated maturase [Novosphingobium
aromaticivorans]
gb|ABD26634.1| RNA-directed DNA polymerase [Novosphingobium aromaticivorans DSM
12444]
Length = 633
Score = 189 bits (481), Expect = 2e-46
Identities = 118/356 (33%), Positives = 189/356 (53%), Gaps = 47/356 (13%)
Query: 21 RIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGH 80
++ L RL+ P A + +KGA TPGVDG +++ + + L +G
Sbjct: 22 KVNGLYRLLKSPLLWEHAYQRIAPNKGAMTPGVDGQT---FDGFSPDKVRSIIERLANGT 78
Query: 81 YQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSV 140
Y+P PARRVYIPK+NG+ RPLG+P D++VQ + +E I+E F S+GFRP+RS
Sbjct: 79 YRPQPARRVYIPKANGQKRPLGVPTTEDKLVQEVVRTILEQIYEPLFSRHSHGFRPKRSC 138
Query: 141 HHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTI 200
H A+ +++ T +W+I+ D+ +FD + H +L+ + +RI+D RF+ L+ +
Sbjct: 139 HTALESIRAIWTGV-----KWLIDVDVVGFFDNIDHDVLVSLLEKRIADRRFVRLIRGLL 193
Query: 201 KAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH----------ERYLSGKARK 250
KAG+++ +F G PQGGV+SP+L+NI L+E D ++ +R S AR+
Sbjct: 194 KAGYVEDWVFHKTYSGTPQGGVVSPMLANIYLHELDMFMQAKMAGFDKGKQRSPSPDARR 253
Query: 251 DR---WYWNNSIQRGRS-----------------------TAVRENWQWKP---AVAYCR 281
R Y ++ + R+ AV + + P + YCR
Sbjct: 254 IRNRLSYVRRTVDQLRAKGRGDDPRVTSFLEEIGRLKAERLAVPASDAFDPNYRRLRYCR 313
Query: 282 YADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL 337
YADDF++ V G+K++ I EE R L LKL ++ +K+ I +DG FLG+ +
Sbjct: 314 YADDFIIGVTGSKSEARQIMEEVRTYLSDHLKLAVSAEKSGIHKASDGARFLGYEV 369
>ref|NP_811515.1| putative maturase/reverse transcriptase [Bacteroides
thetaiotaomicron VPI-5482]
gb|AAO77709.1| putative maturase/reverse transcriptase [Bacteroides
thetaiotaomicron VPI-5482]
Length = 607
Score = 188 bits (477), Expect = 5e-46
Identities = 117/355 (32%), Positives = 185/355 (52%), Gaps = 42/355 (11%)
Query: 21 RIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGH 80
+ +RL R++ E A + S G T G DG KT + ++ L L +
Sbjct: 21 KFERLYRVLFNEEMFYVAYQNIYSKTGNMTAGADG--KT-IDGMSIDRVEQLIGSLKNET 77
Query: 81 YQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSV 140
YQP P++R YIPK NGK RPLGIP+ D++VQ + M +E I+E F S+GFRP+RS
Sbjct: 78 YQPNPSKRTYIPKKNGKKRPLGIPSFDDKLVQEVVRMILEAIYEGSFEHTSHGFRPKRSC 137
Query: 141 HHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTI 200
H A+ ++ T +W IEGD+ +FD ++H +L+ +R RI+D RF+ L+ K +
Sbjct: 138 HTALIDIQKTFTAV-----KWFIEGDIKGFFDNINHDVLINILRERIADERFLRLIRKFL 192
Query: 201 KAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSGKARKD------ 251
AG+++ +F G PQGG+ISP+L+NI L++FD+Y+ E R+ G RK
Sbjct: 193 NAGYVEDWVFHRTYSGTPQGGIISPILANIYLDKFDKYIKEYINRFNKGVTRKGDARYKL 252
Query: 252 ----RWYWNNSIQRGRSTAVRENWQWK-----------PA----------VAYCRYADDF 286
R+ ++ + VR+ + PA + Y RYADDF
Sbjct: 253 YEQRRYRLAKKLKNEKDVKVRKQMTAEIKRLREERNNYPARNEMDSSIKRLKYVRYADDF 312
Query: 287 VLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKR 341
++ + G + ++E+ + L +LKL L+ +KT I + FLG+ + +R
Sbjct: 313 LIGITGNLEDCKTVKEDIKNYLNEALKLELSDEKTLITNAQKPAKFLGYDVFIRR 367
>ref|ZP_01290170.1| RNA-directed DNA polymerase (Reverse transcriptase) [delta
proteobacterium MLMS-1]
gb|EAT03405.1| RNA-directed DNA polymerase (Reverse transcriptase) [delta
proteobacterium MLMS-1]
Length = 448
Score = 186 bits (472), Expect = 2e-45
Identities = 130/366 (35%), Positives = 192/366 (52%), Gaps = 46/366 (12%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+S +++KL A +P R L + + + LA A + +++GA GVDG ++
Sbjct: 20 VSLLRQKLGHKAKQEPEFRFYALYDRVYRRDVLASAWNLVRANRGA--AGVDGDTFKTIE 77
Query: 63 AR---LAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
R +A L + EL Y+PLP +RVYIPK+NGK RPLGIP ++DR+VQ A+L+ +
Sbjct: 78 EREDGVATLLDEIHQELREKRYRPLPVKRVYIPKANGKQRPLGIPTIKDRVVQTAVLLVI 137
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPI+E+DF S+GFRP R+ H A+ ++ L + R + + DLSSYFDT+ H L
Sbjct: 138 EPIFEADFEDCSHGFRPGRNAHGALSEIRQALKE----GYREIFDADLSSYFDTIPHDQL 193
Query: 180 MKAVRRRISDARFMTL--LWKTIKA--GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEF 235
M V RRI+D + L +W + A G +D G G PQGGV+SPLL+NI L+EF
Sbjct: 194 MACVERRIADRSLLKLIRMWLSSPAVEGGVDGGKRTRPQVGTPQGGVVSPLLANIYLHEF 253
Query: 236 DQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKA 295
D+ +N + G++ VR RYADD+V + +
Sbjct: 254 DK----------------KFNGAEGPGQTMDVR----------LVRYADDWVALARRIDH 287
Query: 296 QVEAIREECRGVLEGSLKLRLNMDKTKIPHVND---GFIFLGHRLIRKRSRYGEMRVVST 352
++ E L+G L L LN DKT ++N FLG RS +G R ++
Sbjct: 288 RLSDFVET---TLDG-LGLTLNRDKTSTVNLNQPGASLNFLGFTFRLDRSLHGSGRYLNV 343
Query: 353 IPQEKA 358
+P K+
Sbjct: 344 VPAAKS 349
>ref|YP_245692.1| RNA-directed DNA polymerase [Bacillus cereus E33L]
gb|AAY60354.1| RNA-directed DNA polymerase [Bacillus cereus E33L]
Length = 553
Score = 186 bits (472), Expect = 2e-45
Identities = 114/347 (32%), Positives = 186/347 (53%), Gaps = 28/347 (8%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPE--WLAEAARITLSSKGAHTPGVDGVNK 58
M ++++++++ ++++L RL+ + E L R+T +KG T GVDG
Sbjct: 26 MYVTKLRQRIYRAEQLQQQRKVRKLQRLLMRSEANLLLSIRRVTQQNKGKRTAGVDGHTA 85
Query: 59 TMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMA 118
+ R + Q+ + L ++P PA+R+YI K NGKLRPLGIP ++DR+ Q + A
Sbjct: 86 LSRRERNLLYEQLKKLNTLQ--HRPKPAKRIYIVKKNGKLRPLGIPTIKDRVYQNIVRNA 143
Query: 119 MEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRL 178
+EP WE+ F +SYGFRP+RS H AIR++ ++ G T+ +W+ EGD FD ++H
Sbjct: 144 LEPQWEARFEAISYGFRPKRSTHDAIRSIFNRIN--GGTKKKWIFEGDFQGCFDHLNHEW 201
Query: 179 LMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
++K + S LL + +K G+++ F EG PQGG+ISPLL+NI L+ ++
Sbjct: 202 ILK----QTSYFPGRKLLKRWLKMGYMEQSFFAETQEGTPQGGIISPLLANIALHGMEET 257
Query: 239 LHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVE 298
L Y D + N + + RYADDFV++ + TK Q
Sbjct: 258 LGITYKKNYKANDSYIMNPACK----------------FTLIRYADDFVVLTE-TKEQAL 300
Query: 299 AIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYG 345
++ R L+ L L+ +KTK+ H+ +GF FLG + + ++ G
Sbjct: 301 SVYMRLRPYLK-DRGLELSPEKTKVTHIEEGFEFLGFLIRQYQTEQG 346
>ref|ZP_01046790.1| Putative reverse transcriptase [Nitrobacter sp. Nb-311A]
gb|EAQ35343.1| Putative reverse transcriptase [Nitrobacter sp. Nb-311A]
Length = 486
Score = 186 bits (472), Expect = 2e-45
Identities = 116/322 (36%), Positives = 175/322 (54%), Gaps = 15/322 (4%)
Query: 53 VDGVNKTMLQARLAVE--LQILRDELLSGHYQPLPARRVYIPKSN--GKLRPLGIPALRD 108
+D V ++ R+ VE L R LL G Y+P RRV IPK G RPLG+P ++D
Sbjct: 1 MDKVTVKHIETRIGVERFLTTTRTMLLDGSYRPQAVRRVMIPKRGRPGLFRPLGVPTVQD 60
Query: 109 RIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRG--------R 160
R+VQ A+L +EPI+E+ F T+SYGFRP+R+ A+ ++ + G+ +
Sbjct: 61 RVVQAALLQLLEPIFEAVFLTVSYGFRPKRACRDALEHIRNAIRPTGQKTETDWPRPPYQ 120
Query: 161 WVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQG 220
WVIEGD+ FD + H +M +RRR+SD R L+ +KAG + G G PQG
Sbjct: 121 WVIEGDIKRCFDNIDHHHVMTCLRRRVSDRRVTRLVRAFLKAGVLSEGSLVRTKAGTPQG 180
Query: 221 GVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYC 280
GV+SPLL+N+ML+ ++ + +Y+ + +D + R E +
Sbjct: 181 GVLSPLLANVMLDGIER-RYAKYVVPRLTRDGKPYARPGNELRKFRHYERKAGRVVFLPI 239
Query: 281 RYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL-IR 339
RYADDFV++V GT+ Q A +E L +KL L +KT + + +GF FLGHR+ +R
Sbjct: 240 RYADDFVVLVNGTEEQARAEKEALAVFLREEMKLTLAPEKTHVTSLTEGFEFLGHRVRLR 299
Query: 340 KRSRYGEMRVVSTIPQEKARNF 361
R+G V IP+ + ++F
Sbjct: 300 WDDRWGYWPRVE-IPKARVKDF 320
>ref|NP_150408.1| hypothetical protein PylioMp37 [Pylaiella littoralis]
emb|CAC50849.1| orf748 [Pylaiella littoralis]
Length = 748
Score = 186 bits (471), Expect = 2e-45
Identities = 133/361 (36%), Positives = 197/361 (54%), Gaps = 32/361 (8%)
Query: 17 DPSLRIQRLLRLITQPEWLAEAARITLSSK-GAHTPGVDGVNKTMLQARLAVELQILRDE 75
+P+ +R+L L++ + L EAA I + SK G T GVDG KT+ + + RD
Sbjct: 182 NPNHLNERILSLVSSYDML-EAAYIKIKSKPGNMTKGVDG--KTLDGVNVDWLKSLSRD- 237
Query: 76 LLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFR 135
+ SG Y P RR+ IPK G+ RPLGIP+ RD+IVQ ++ ++ I+E F S+GFR
Sbjct: 238 VGSGSYNPYLVRRLMIPKRKGR-RPLGIPSPRDKIVQESIRTVLQSIYEPSFIACSHGFR 296
Query: 136 PERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTL 195
P RS H A++ VKL ++ W IEGD+ FD++ HR L + RRI D FM L
Sbjct: 297 PGRSCHTALKEVKLTFSNT-----TWFIEGDIEKCFDSIDHRSLSTLLERRIKDKGFMDL 351
Query: 196 LWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYL---HERYLSGKARKDR 252
WK +K G++ G + +G PQG V+SPLLSNI L+E D ++ E + G RK
Sbjct: 352 YWKMVKVGYMSFGKINQSDKGTPQGSVVSPLLSNIYLHELDNWMTRRKESFEKGTRRKAN 411
Query: 253 WYWNNSIQ--RGRSTAVRENWQWK-------PAVAYCRYADDFVLIVKGTKAQVEAIREE 303
+ ++ G S A R N + Y RYADDF++ + G+K + +E
Sbjct: 412 PVYTKYVRVAGGASAARRLNIPSADPLDPNFKRLRYVRYADDFLIGIIGSKTDGICLIKE 471
Query: 304 CRGVLEGSLKLRLNMDKTKIPH-VNDGFIFLGH--RLIR------KRSRYGEMRVVSTIP 354
+ L LKL LN+ KTK+ H +++ FLG ++I K+++ G++ VS+ P
Sbjct: 472 LKEFLHDILKLDLNLTKTKLTHTMSEKPYFLGTWVKIIPVSGFQIKKNKSGKITRVSSRP 531
Query: 355 Q 355
Q
Sbjct: 532 Q 532
>ref|NP_832403.1| RNA-directed DNA polymerase [Bacillus cereus ATCC 14579]
ref|NP_979645.1| reverse transcriptase/endonuclease protein [Bacillus cereus ATCC
10987]
gb|AAP09604.1| RNA-directed DNA polymerase [Bacillus cereus ATCC 14579]
gb|AAS42253.1| reverse transcriptase/endonuclease protein [Bacillus cereus ATCC
10987]
Length = 548
Score = 185 bits (469), Expect = 4e-45
Identities = 115/347 (33%), Positives = 186/347 (53%), Gaps = 28/347 (8%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPE--WLAEAARITLSSKGAHTPGVDGVNK 58
M ++++++++ ++++L RL+ + E L R+T +KG T GVD
Sbjct: 21 MYVTKLRQRIYRAEQLQQQRKVRKLQRLLMRSEANLLLSIRRVTQQNKGKRTAGVD--EH 78
Query: 59 TMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMA 118
T L R L +L + ++P PA+R+YI K NGKLRPLGIP ++DR+ Q + A
Sbjct: 79 TALSRRERNLLYEQLKKLNTLQHRPKPAKRIYIVKKNGKLRPLGIPTIKDRVYQNIVRNA 138
Query: 119 MEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRL 178
+EP WE+ F +SYGFRP+RS H AIR++ ++ G T+ +W++EGD FD ++H
Sbjct: 139 LEPQWEARFEAISYGFRPKRSTHDAIRSIFNRIN--GGTKKKWIVEGDFQGCFDHLNHEW 196
Query: 179 LMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
++K + S LL + +K G+++ F EG PQGG+ISPLL+NI L+ ++
Sbjct: 197 ILK----QTSYFPGRKLLKRWLKMGYMEQSFFAETQEGTPQGGIISPLLANIALHGMEET 252
Query: 239 LHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVE 298
L Y D + N + + RYADDFV++ + TK Q
Sbjct: 253 LGITYKKNYKANDSYIMNPACK----------------FTLIRYADDFVVLTE-TKEQAL 295
Query: 299 AIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYG 345
++ R L+ L L+ +KTK+ H+ +GF FLG + + ++ G
Sbjct: 296 SVYMRLRPYLK-DRGLELSPEKTKVTHIEEGFEFLGFLIRQYQTEQG 341
>ref|YP_516283.1| hypothetical protein DSY0050 [Desulfitobacterium hafniense Y51]
ref|YP_520885.1| hypothetical protein DSY4652 [Desulfitobacterium hafniense Y51]
dbj|BAE81839.1| hypothetical protein [Desulfitobacterium hafniense Y51]
dbj|BAE86441.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 595
Score = 185 bits (469), Expect = 4e-45
Identities = 121/363 (33%), Positives = 186/363 (51%), Gaps = 44/363 (12%)
Query: 15 ATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVN-KTMLQARLAVELQILR 73
++D S +RL R + E A + +S+G T G DG M R+ + L+
Sbjct: 5 SSDRSYTFERLYRNLYNRELFLLAYQNIYASQGNMTKGTDGKTIDAMSLNRIDGIIASLK 64
Query: 74 DELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYG 133
DE YQP P+RR YIPK NGKLRPLGIP+ D++VQ + + +E ++E F S+G
Sbjct: 65 DE----SYQPQPSRRTYIPKKNGKLRPLGIPSFDDKLVQECVRLLLEAVYEGSFAKTSHG 120
Query: 134 FRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFM 193
FRP S H A+ V++ T +W +EGD+ +FD ++H +++ + I D RF+
Sbjct: 121 FRPNHSCHTALSQVQVCFTGV-----KWFVEGDIKGFFDNINHEVMIGILAEHIKDERFL 175
Query: 194 TLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSGKAR- 249
L+ K +KAG+++ + G PQGG+ISP+L+NI L++ D+Y+ E R+ GKAR
Sbjct: 176 RLIRKFLKAGYLEDWQYHNTYSGTPQGGIISPILANIYLDKLDRYMEELKKRFDKGKARA 235
Query: 250 ---------KDRWYWNNSIQRGRS--------TAVRENWQWKPAV-------------AY 279
K R ++ S +RE + K + Y
Sbjct: 236 VYPETYELEKKRGVLAKKLRNTNSEEEKQVLTEKIREIDRKKLTIPYSDPFDTSFKRLQY 295
Query: 280 CRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIR 339
RYADDF++ V G+K AI+E+ + + L L L+ +KT I H FLG+ +
Sbjct: 296 VRYADDFLIGVIGSKEDAIAIKEQVKAFVADMLILELSDEKTLITHSEKRARFLGYDIYV 355
Query: 340 KRS 342
+RS
Sbjct: 356 RRS 358
>ref|YP_847308.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Syntrophobacter fumaroxidans MPOB]
gb|ABK18873.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Syntrophobacter fumaroxidans MPOB]
Length = 467
Score = 185 bits (469), Expect = 4e-45
Identities = 121/331 (36%), Positives = 180/331 (54%), Gaps = 47/331 (14%)
Query: 17 DPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDEL 76
D R +L+ + + E + A R ++KG+ GVDGV+ L+A L +++EL
Sbjct: 40 DSRQRTMQLMEAVVERENMFGALRQVEANKGS--AGVDGVSVDALRACLREHWPRIKEEL 97
Query: 77 LSGHYQPLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFR 135
L G YQP P R+V IPK GK +R LGIP + DR++Q+A+ M+PI++ DF SYGFR
Sbjct: 98 LEGRYQPQPVRKVEIPKPGGKGMRQLGIPTVMDRLIQQALNQVMQPIFDPDFSESSYGFR 157
Query: 136 PERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTL 195
P RS H A+ L+ + T RWV++ DL +FD V+H +LM + R+I+D R + L
Sbjct: 158 PGRSAHQAV----LRAREYAATDRRWVVDMDLEKFFDRVNHDILMARLARKIADRRVLQL 213
Query: 196 LWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYW 255
+ + ++AG + G+ +EG PQGG +SPLLSNI+L++ D+ L
Sbjct: 214 IRRYLQAGSMVGGVVSPRTEGTPQGGPLSPLLSNILLDDLDKELE--------------- 258
Query: 256 NNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLR 315
QRG A+CRYADD + VK +A + + E L LKL+
Sbjct: 259 ----QRGH--------------AFCRYADDCNIYVKSRRAG-QRVLESLTRFLANRLKLK 299
Query: 316 LNMDKTKI--PHVNDGFIFLGHRL-IRKRSR 343
+N+DK+ + P V FLG+ + KR R
Sbjct: 300 VNVDKSAVARPWVRK---FLGYSMTFHKRPR 327
>ref|ZP_01550020.1| reverse transcriptase-like protein [Stappia aggregata IAM 12614]
gb|EAV41332.1| reverse transcriptase-like protein [Stappia aggregata IAM 12614]
Length = 279
Score = 184 bits (468), Expect = 5e-45
Identities = 97/181 (53%), Positives = 112/181 (61%), Gaps = 43/181 (23%)
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D RF+ LLW+ +KAGHID GLFRAASEGVPQGGV+SPLLSNIML+EFD +L +YL+ KA
Sbjct: 3 DGRFVDLLWRILKAGHIDRGLFRAASEGVPQGGVLSPLLSNIMLHEFDVWLEAKYLNRKA 62
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
RKDRW WN IQ+GR VREN QWKPA+AYCRYAD
Sbjct: 63 RKDRWAWNFGIQQGRPITVRENRQWKPAIAYCRYAD------------------------ 98
Query: 309 EGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYGEMRVVSTIPQEKARNFAASLTAL 368
DGF+FLGHR+IRKR G M VV+TIP+EKA+ F LT
Sbjct: 99 -------------------DGFVFLGHRIIRKRGSNGRMSVVTTIPREKAKAFVRKLTET 139
Query: 369 L 369
L
Sbjct: 140 L 140
>ref|ZP_00741363.1| Reverse transcriptase / RNA maturase / Endonuclease [Bacillus
thuringiensis serovar israelensis ATCC 35646]
gb|EAO54373.1| Reverse transcriptase / RNA maturase / Endonuclease [Bacillus
thuringiensis serovar israelensis ATCC 35646]
Length = 607
Score = 184 bits (467), Expect = 7e-45
Identities = 120/375 (32%), Positives = 188/375 (50%), Gaps = 51/375 (13%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM 60
+++S +Q++ + + +RL R + PE+ A + GA T GVD K
Sbjct: 6 VVLSNLQKQ-----SQKEDYKFRRLYRNLYNPEFYFTAYDNLSKNDGALTMGVD---KRS 57
Query: 61 LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
+ ++ L + L YQP P++RVYIPK NGK RPLGIP+ D++VQ + M +E
Sbjct: 58 IDGFSIEIIEELIETLKQRTYQPFPSKRVYIPKKNGKKRPLGIPSFADKLVQEVVRMILE 117
Query: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
I+E F S+ ++ +S H A++ ++ T +W IEGD+ +FD ++H L+
Sbjct: 118 AIYEPTFSISSHAYQKGKSCHTALQEIQRTFTG-----SKWFIEGDIKGFFDNINHHTLI 172
Query: 181 KAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH 240
+R+RI D F+ L+WK ++AG+++ F G PQGG+ISPLLSNI LNE D+Y+
Sbjct: 173 GILRKRIEDEAFIELIWKFLRAGYMEEWKFHNTFSGAPQGGIISPLLSNIYLNELDKYMM 232
Query: 241 ---ERYLSGKARK-----DRWYWNNSIQRGRSTAVRENWQWKPA---------------- 276
+++ GK RK +R Y + EN Q A
Sbjct: 233 DFIQKFNQGKKRKINPDYERKYTQMRKAIRKYKIALENEQMGEAEQHLEQAKALKKELSS 292
Query: 277 -------------VAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKI 323
+ Y RYADDF++ V G+K I+E L +L+L L+ +KT I
Sbjct: 293 IPYSNPMDSNYKRLTYVRYADDFLIGVIGSKYDARNIKETLTEYLMETLQLELSQEKTLI 352
Query: 324 PHVNDGFI-FLGHRL 337
H ++ FLG+ +
Sbjct: 353 THASENHAGFLGYNI 367
>ref|NP_982082.1| reverse transcriptase/endonuclease protein [Bacillus cereus ATCC
10987]
gb|AAS44925.1| reverse transcriptase/endonuclease protein [Bacillus cereus ATCC
10987]
gb|ABK00691.1| reverse transcriptase/endonuclease protein [Bacillus cereus]
gb|ABK00912.1| reverse transcriptase/endonuclease protein [Bacillus cereus]
gb|ABK01177.1| reverse transcriptase/endonuclease protein [Bacillus cereus]
Length = 548
Score = 184 bits (466), Expect = 9e-45
Identities = 115/347 (33%), Positives = 185/347 (53%), Gaps = 28/347 (8%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPE--WLAEAARITLSSKGAHTPGVDGVNK 58
M ++++++++ ++++L RL+ + E L R+T +KG T GVD
Sbjct: 21 MYVTKLRQRIYRAEQLQQQRKVRKLQRLLMRSEANLLLSIRRVTQQNKGKRTAGVD--EH 78
Query: 59 TMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMA 118
T L R L +L + ++P PA+R+YI K NGKLRPLGIP ++DR+ Q + A
Sbjct: 79 TALSRRERNLLYEQLKKLNTLQHRPKPAKRIYIVKKNGKLRPLGIPTIKDRVYQNIVRNA 138
Query: 119 MEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRL 178
+EP WE+ F +SYGFRP+RS H AIR++ ++ G T+ +W+ EGD FD ++H
Sbjct: 139 LEPQWEARFEAISYGFRPKRSTHDAIRSIFNRIN--GGTKKKWIFEGDFQGCFDHLNHEW 196
Query: 179 LMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
++K + S LL + +K G+++ F EG PQGG+ISPLL+NI L+ ++
Sbjct: 197 ILK----QTSYFPGRKLLKRWLKMGYMEQSFFAETQEGTPQGGIISPLLANIALHGMEET 252
Query: 239 LHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVE 298
L Y D + N + + RYADDFV++ + TK Q
Sbjct: 253 LGITYKKNYKANDSYIMNPACK----------------FTLIRYADDFVVLTE-TKEQAL 295
Query: 299 AIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYG 345
++ R L+ L L+ +KTK+ H+ +GF FLG + + ++ G
Sbjct: 296 SVYMRLRPYLK-DRGLELSPEKTKVTHIEEGFEFLGFLIRQYQTEQG 341
>ref|YP_603203.1| Reverse transcriptase / RNA maturase / Endonuclease [Streptococcus
pyogenes MGAS10750]
gb|ABF38659.1| Reverse transcriptase / RNA maturase / Endonuclease [Streptococcus
pyogenes MGAS10750]
Length = 625
Score = 182 bits (462), Expect = 3e-44
Identities = 115/376 (30%), Positives = 185/376 (49%), Gaps = 51/376 (13%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
+RL R + + +A + ++ G T GVD N+T + A + + D L Y
Sbjct: 43 KRLYRNLYNIDLFLQAYQNIYANAGNMTKGVD--NQT-ISAMSLERINKIIDSLKDESYS 99
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P +RVYIPK NGKLRPLGIP++ D++VQ M + I++ F S+GFR RS H
Sbjct: 100 PTPTKRVYIPKKNGKLRPLGIPSIGDKLVQEVCRMLLNSIYDESFEDTSHGFRDNRSCHT 159
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
A+R ++ + C +W +EGD+ +FD + H +++ + +RI D RF+ L+ K +K+
Sbjct: 160 ALRQIQNRFVRC-----KWFVEGDIKGFFDNIDHNIMIDILSKRIDDERFLRLIRKFLKS 214
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH---ERYLSGKARKDRWYWNNSI 259
G+++ + G+PQG +ISP+LSNI L++FD+Y+ E + G RK +
Sbjct: 215 GYMEQNQYHNTYSGMPQGSIISPILSNIYLDKFDKYMQNYKESFDKGNKRKQNKEYKALY 274
Query: 260 QRGRS----------------------------------TAVRENWQWKPAVAYCRYADD 285
R + + EN++ + Y RYADD
Sbjct: 275 DRRKRLENKLSKTTNKTEIDDIKSEIEEINKRYFNIPCLNPMDENFK---RIQYVRYADD 331
Query: 286 FVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSRYG 345
F++ + G+KA E ++++ ++ L L L+ +KT + D FLG + R G
Sbjct: 332 FIIGIIGSKADAEMVKQDIGQFIKSELNLELSDEKTLVTKSTDRAKFLGFDI---RVTPG 388
Query: 346 EMRVVSTIPQEKARNF 361
T KARNF
Sbjct: 389 SNHTKRTKAGIKARNF 404
>ref|YP_520787.1| hypothetical protein DSY4554 [Desulfitobacterium hafniense Y51]
dbj|BAE86343.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 605
Score = 182 bits (462), Expect = 3e-44
Identities = 119/363 (32%), Positives = 185/363 (50%), Gaps = 44/363 (12%)
Query: 15 ATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVN-KTMLQARLAVELQILR 73
++D S +RL R + E A + +S+G T G DG M R+ + L+
Sbjct: 15 SSDKSYTFERLYRNLYNRELFLLAYQNIYASQGNMTKGTDGKTIDAMSLNRIDGIIASLK 74
Query: 74 DELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYG 133
DE YQP P+RR YIPK NGKLRPLGIP+ D++VQ + + +E ++E F S+G
Sbjct: 75 DE----SYQPQPSRRTYIPKKNGKLRPLGIPSFDDKLVQECVRLLLEAVYEGSFAKTSHG 130
Query: 134 FRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFM 193
FRP S H A+ V++ T +W +EGD+ +FD ++H +++ + I D RF+
Sbjct: 131 FRPNHSCHTALSQVQVCFTGV-----KWFVEGDIKGFFDNINHEVMIGILAEHIKDERFL 185
Query: 194 TLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSGKAR- 249
L+ K +KAG+++ + G PQGG+ISP+L+NI L++ D+Y+ E R+ G R
Sbjct: 186 RLIRKFLKAGYLEDWQYHNTYSGTPQGGIISPILANIYLDKLDRYMEELKKRFDKGAVRA 245
Query: 250 ---------KDRWYWNNSIQRGRS--------TAVRENWQWKPAV-------------AY 279
K R ++ S +RE + K + Y
Sbjct: 246 VYPETYELEKKRGVLAKKLRNTNSEEEKQVLTEKIREIDRKKLTIPYSDPFDTSFKRLQY 305
Query: 280 CRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIR 339
RYADDF++ V G+K AI+E+ + + +L L L+ +KT I H FLG+ +
Sbjct: 306 VRYADDFLIGVIGSKEDAIAIKEQVKAFVADTLILELSDEKTLITHSEKRARFLGYDIYV 365
Query: 340 KRS 342
+RS
Sbjct: 366 RRS 368
>ref|NP_862610.1| maturase MatR [Lactococcus lactis subsp. lactis]
gb|AAF98310.1|AF243383_11 maturase MatR [Lactococcus lactis subsp. lactis]
Length = 599
Score = 181 bits (460), Expect = 5e-44
Identities = 119/384 (30%), Positives = 194/384 (50%), Gaps = 57/384 (14%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGV-DGVNKTMLQARLAVELQILRDELLSGHYQ 82
RL R + +P+ A + S+KGA T G+ D + ++ +Q L+D G Y
Sbjct: 25 RLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDTADGFSEEKIKKIIQSLKD----GTYY 80
Query: 83 PLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVH 141
P P RR+YI K N K +RPLGIP D+++Q A+ + +E I+E F +S+GFRP+RS H
Sbjct: 81 PQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCH 140
Query: 142 HAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIK 201
A++T+K + RW +EGD+ FD + H L+ + +I D + L++K +K
Sbjct: 141 TALKTIKREFGGA-----RWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLK 195
Query: 202 AGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY----------------------L 239
AG+++ + G PQGG++SPLL+NI L+E D++ L
Sbjct: 196 AGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYREL 255
Query: 240 HE---------RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 290
H + L G+ K + +R R T + Q + Y RYADDF++ V
Sbjct: 256 HNEIKRISHRLKKLEGE-EKAKVLLEYQEKRKRLTTLPCTSQTNKVLKYVRYADDFIISV 314
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL------------- 337
KG+K + I+E+ + + LK+ L+ +KT I H + FLG+ +
Sbjct: 315 KGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQPARFLGYDIRVRRSGTIKRSGK 374
Query: 338 IRKRSRYGEMRVVSTIPQEKARNF 361
++KR+ G + ++ + Q+K R F
Sbjct: 375 VKKRTLNGSVELLIPL-QDKIRQF 397
>ref|NP_687596.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae 2603V/R]
gb|AAM99468.1|AE014217_23 prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae 2603V/R]
Length = 439
Score = 180 bits (457), Expect = 1e-43
Identities = 108/274 (39%), Positives = 149/274 (54%), Gaps = 34/274 (12%)
Query: 69 LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFH 128
L + D+L + YQP +RVYIPK+NGK RPLGIP +RDR+VQ A+ + +EPI+E+DF
Sbjct: 78 LDEIEDQLRNKKYQPKAVKRVYIPKANGKKRPLGIPTVRDRVVQTAVKIVIEPIFEADFQ 137
Query: 129 TLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRIS 188
SYGFRP+RS + AIR + L E WVI+ DL YFDT+ H L+ V+ R++
Sbjct: 138 EFSYGFRPKRSANQAIREIYKYLNYGCE----WVIDADLKGYFDTIPHDKLLLLVKERVT 193
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D + LL ++AG ++ R+ G PQGGVISPLL+NI LN D+
Sbjct: 194 DKSIIKLLSLWLEAGIMEDNQVRSNILGTPQGGVISPLLANIYLNALDR----------- 242
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
YW N+ GR RYADDFV++ + ++
Sbjct: 243 -----YWKNNRLEGRGHDAH----------LIRYADDFVILCSNNPKKYYQYAKQ----R 283
Query: 309 EGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRS 342
L L LN +KT+I H +GF FLG+ L + +S
Sbjct: 284 IDKLGLTLNEEKTRIVHATEGFDFLGYTLRKSKS 317
>ref|ZP_00784000.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae H36B]
gb|EAO77261.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Streptococcus agalactiae H36B]
Length = 439
Score = 180 bits (457), Expect = 1e-43
Identities = 108/274 (39%), Positives = 149/274 (54%), Gaps = 34/274 (12%)
Query: 69 LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFH 128
L + D+L + YQP +RVYIPK+NGK RPLGIP +RDR+VQ A+ + +EPI+E+DF
Sbjct: 78 LDEIEDQLRNKKYQPKAVKRVYIPKANGKKRPLGIPTVRDRVVQTAVKIVIEPIFEADFQ 137
Query: 129 TLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRIS 188
SYGFRP+RS + AIR + L E WVI+ DL YFDT+ H L+ V+ R++
Sbjct: 138 KFSYGFRPKRSANQAIREIYKYLNYGCE----WVIDADLKGYFDTIPHDKLLLLVKERVT 193
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D + LL ++AG ++ R+ G PQGGVISPLL+NI LN D+
Sbjct: 194 DKSIIKLLSLWLEAGIMEDNQVRSNILGTPQGGVISPLLANIYLNALDR----------- 242
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
YW N+ GR RYADDFV++ + ++
Sbjct: 243 -----YWKNNRLEGRGHDAH----------LIRYADDFVILCSNNPKKYYQYAKQ----R 283
Query: 309 EGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRS 342
L L LN +KT+I H +GF FLG+ L + +S
Sbjct: 284 IDKLGLTLNEEKTRIVHATEGFDFLGYTLRKSKS 317
>dbj|GAA02477.1| unnamed protein product [Pelotomaculum thermopropionicum SI]
Length = 423
Score = 179 bits (455), Expect = 2e-43
Identities = 109/306 (35%), Positives = 161/306 (52%), Gaps = 39/306 (12%)
Query: 35 LAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKS 94
L +A + +++GA PG+DG L L L EL +G Y+P P +RV IPK
Sbjct: 17 LEKAYQAVRANRGA--PGIDGETVEAFGQNLGQRLIQLHHELKTGTYEPQPVKRVEIPKP 74
Query: 95 NGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDC 154
+G RPLGIP +RDR+VQ+A+L ++PI+E FH SYG+RP RS H A+ + +
Sbjct: 75 DGSTRPLGIPTVRDRVVQQALLNILQPIFEPGFHPSSYGYRPGRSCHQAVAKAERFMNKY 134
Query: 155 GETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAAS 214
G +V++ DLS FD + H L+++ V R+ISD + L+ K + AG + G +
Sbjct: 135 GL---EYVVDMDLSKCFDRLDHELILEEVNRKISDGSVLKLIKKFLTAGVMKDGQWDEID 191
Query: 215 EGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWK 274
G PQGGVISPLL+NI L+ FDQ + R
Sbjct: 192 TGSPQGGVISPLLANIYLDRFDQAMKSR-------------------------------- 219
Query: 275 PAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLG 334
+ RYADD +L+ T+ + R+ +LEG LKL +N +KT + V++G +LG
Sbjct: 220 -GIRIVRYADD-ILVFARTRKEAGNYRQVATQILEGELKLEVNKEKTHLTSVHEGVAYLG 277
Query: 335 HRLIRK 340
+ +K
Sbjct: 278 FIIHKK 283
>ref|YP_809603.1| Retron-type reverse transcriptase [Lactococcus lactis subsp.
cremoris SK11]
gb|ABJ73181.1| Retron-type reverse transcriptase [Lactococcus lactis subsp.
cremoris SK11]
Length = 599
Score = 179 bits (454), Expect = 2e-43
Identities = 118/384 (30%), Positives = 193/384 (50%), Gaps = 57/384 (14%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGV-DGVNKTMLQARLAVELQILRDELLSGHYQ 82
RL R + +P+ A + S+KGA T G+ D + ++ +Q L+D G Y
Sbjct: 25 RLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDTADGFSEEKIKKIIQSLKD----GTYY 80
Query: 83 PLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVH 141
P P RR+YI K N K +RPLGIP D+++Q A+ + +E I+E F +S+GFRP+RS H
Sbjct: 81 PQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCH 140
Query: 142 HAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIK 201
A++T+K + RW +EGD+ FD + H L+ + +I D + L++K +K
Sbjct: 141 TALKTIKREFGGA-----RWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLK 195
Query: 202 AGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY----------------------L 239
AG+++ + G PQGG++SPLL+NI L+E D++ L
Sbjct: 196 AGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYREL 255
Query: 240 HE---------RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 290
H + L G+ K + +R R + Q + Y RYADDF++ V
Sbjct: 256 HNEIKRISHRLKKLEGE-EKAKVLLEYQEKRKRLPTLPCTSQTNKVLKYVRYADDFIISV 314
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL------------- 337
KG+K + I+E+ + + LK+ L+ +KT I H + FLG+ +
Sbjct: 315 KGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQPARFLGYDIRVRRSGTIKRSGK 374
Query: 338 IRKRSRYGEMRVVSTIPQEKARNF 361
++KR+ G + ++ + Q+K R F
Sbjct: 375 VKKRTLNGSVELLIPL-QDKIRQF 397
>ref|YP_066243.1| similar to reverse transcriptase/maturase [Desulfotalea
psychrophila LSv54]
emb|CAG37236.1| related to reverse transcriptase/maturase [Desulfotalea
psychrophila LSv54]
Length = 439
Score = 179 bits (454), Expect = 2e-43
Identities = 118/329 (35%), Positives = 174/329 (52%), Gaps = 42/329 (12%)
Query: 44 SSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGI 103
S+ GA G+DG + L + L L EL YQP P RRV IPK+NG +R LGI
Sbjct: 27 SANGA--AGIDGQSVKDFVESLDINLDRLLTELREKSYQPQPVRRVEIPKTNGGVRLLGI 84
Query: 104 PALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVI 163
PA+RDR+VQ+A+L ++PI++ FH SYG+RP RS H AI + + +WV+
Sbjct: 85 PAVRDRVVQQALLDILQPIFDPGFHPSSYGYRPGRSCHQAITKATMFIRKYDR---KWVV 141
Query: 164 EGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVI 223
+ DLS FDT+ H L++ ++ RRI D + LL K +K+G + ++A+ G PQGGVI
Sbjct: 142 DMDLSKCFDTLDHDLILSSISRRIKDGSILGLLQKILKSGVMTDEGWQASEVGSPQGGVI 201
Query: 224 SPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYA 283
SPL++NI L++FDQ++ ER RYA
Sbjct: 202 SPLIANIYLDQFDQFMRER---------------------------------GHRIVRYA 228
Query: 284 DDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
DD +LI+ +K+ + + LE L L +N++KT I H G FLG + K +R
Sbjct: 229 DD-ILILCSSKSAAKNALLQASCFLEKGLLLTVNLEKTHICHSRSGVAFLGVSIHSKYTR 287
Query: 344 YGEMRVVSTIPQEKA---RNFAASLTALL 369
+ ++ S + KA RN +L A++
Sbjct: 288 IQKAKIRSFKEKVKALTRRNGGKNLEAVI 316
>sp|P0A3U0|LTRA_LACLA Group II intron-encoded protein ltrA [Includes:
Reverse-transcriptase ; RNA maturase ; DNA endonuclease
]
sp|P0A3U1|LTRA_LACLC Group II intron-encoded protein ltrA [Includes:
Reverse-transcriptase ; RNA maturase ; DNA endonuclease
]
emb|CAA61996.1| maturase-related protein [Lactococcus lactis]
gb|AAB06503.1| putative maturase [Lactococcus lactis subsp. lactis]
gb|AAP70045.1| LtrA [Shuttle vector pLEIItd+KR'']
emb|CAL97959.1| maturase [Lactococcus lactis subsp. cremoris MG1363]
Length = 599
Score = 179 bits (454), Expect = 2e-43
Identities = 118/384 (30%), Positives = 193/384 (50%), Gaps = 57/384 (14%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGV-DGVNKTMLQARLAVELQILRDELLSGHYQ 82
RL R + +P+ A + S+KGA T G+ D + ++ +Q L+D G Y
Sbjct: 25 RLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDTADGFSEEKIKKIIQSLKD----GTYY 80
Query: 83 PLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVH 141
P P RR+YI K N K +RPLGIP D+++Q A+ + +E I+E F +S+GFRP+RS H
Sbjct: 81 PQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCH 140
Query: 142 HAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIK 201
A++T+K + RW +EGD+ FD + H L+ + +I D + L++K +K
Sbjct: 141 TALKTIKREFGGA-----RWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLK 195
Query: 202 AGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY----------------------L 239
AG+++ + G PQGG++SPLL+NI L+E D++ L
Sbjct: 196 AGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYREL 255
Query: 240 HE---------RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 290
H + L G+ K + +R R + Q + Y RYADDF++ V
Sbjct: 256 HNEIKRISHRLKKLEGE-EKAKVLLEYQEKRKRLPTLPCTSQTNKVLKYVRYADDFIISV 314
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL------------- 337
KG+K + I+E+ + + LK+ L+ +KT I H + FLG+ +
Sbjct: 315 KGSKEDCQWIKEQLKLFIHNKLKMELSEEKTLITHSSQPARFLGYDIRVRRSGTIKRSGK 374
Query: 338 IRKRSRYGEMRVVSTIPQEKARNF 361
++KR+ G + ++ + Q+K R F
Sbjct: 375 VKKRTLNGSVELLIPL-QDKIRQF 397
>ref|ZP_01362792.1| RNA-directed DNA polymerase (Reverse transcriptase) [Clostridium
sp. OhILAs]
gb|EAT29598.1| RNA-directed DNA polymerase (Reverse transcriptase) [Clostridium
sp. OhILAs]
Length = 421
Score = 179 bits (453), Expect = 3e-43
Identities = 112/310 (36%), Positives = 161/310 (51%), Gaps = 39/310 (12%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPL 84
L+ I + E L A + + GA PG+DG L + ++ L D+L + Y+P
Sbjct: 7 LIDKIYRKENLELAFKYVKKNNGA--PGIDGETVFNFHLNLELNIEFLHDKLKTNGYEPS 64
Query: 85 PARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAI 144
P RRV I K +G +R LGIP ++DR+VQ+A++ +EPI++ FH SYG+RP S H A+
Sbjct: 65 PVRRVEIQKPDGGVRLLGIPTVKDRVVQQAIVNIIEPIFDKTFHPSSYGYRPNHSQHGAV 124
Query: 145 RTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGH 204
+ + G V++ DLS FDT+ H ++MKAV RISD R + L+ K +KAG
Sbjct: 125 AKAERFMNKYGLEH---VVDMDLSKCFDTLDHEIMMKAVSERISDGRVLKLIEKFLKAGV 181
Query: 205 IDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRS 264
+ F G PQGGVISPLLSNI LN+FDQ + +
Sbjct: 182 MHSDNFSRTEVGSPQGGVISPLLSNIYLNQFDQRMMSK---------------------- 219
Query: 265 TAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIP 324
+ R+ADD ++ K K + VLE LKL++N +KTK+
Sbjct: 220 -----------GIRIVRFADDILIFAKDKKTAGN-YKAYATQVLENELKLKVNNEKTKLT 267
Query: 325 HVNDGFIFLG 334
+VN+G FLG
Sbjct: 268 NVNEGVEFLG 277
>gb|AAF27656.1|AF218567_1 putative maturase [Cryphonectria parasitica]
Length = 778
Score = 178 bits (451), Expect = 5e-43
Identities = 122/359 (33%), Positives = 187/359 (52%), Gaps = 41/359 (11%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPL 84
+L ++ P +L +G T G D L V+ EL +G Y
Sbjct: 213 ILNVLADPNFLIACYDEIKGKQGNMTRGYDKATLDGLDYNWFVKTA---GELKAGKYNFK 269
Query: 85 PARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAI 144
P+RRV IPK+NGK RPLG+ + RD+IVQ+A+ +E I+E F S+GFRP RS H A+
Sbjct: 270 PSRRVEIPKANGKTRPLGVGSPRDKIVQKALHAILEAIFEPLFLPSSHGFRPNRSTHSAL 329
Query: 145 RTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGH 204
V L + WVI+GD++ FD++ H +++K + +I D +++ L+ K ++AGH
Sbjct: 330 LKVYL-----SGNKHNWVIQGDITKCFDSIPHSIILKRIGAQIGDKKYLNLISKYLEAGH 384
Query: 205 ID--VGLFRAASEGVPQGGVISPLLSNIMLNEFDQY---LHERYLSGKARKDRW---YWN 256
ID G + G PQGG++SP+LSNI+L+EFD+Y L E + GK R RW Y
Sbjct: 385 IDPKTGTKVVLNYGTPQGGILSPILSNIVLHEFDKYMAKLSESFHKGKKR--RWNPAYKR 442
Query: 257 NSIQRGRSTAVRENW-------------QWKP---AVAYCRYADDFVLIVKGTKAQVEAI 300
+RGR+ ++ E + P + Y RYADDFV+ + G+ I
Sbjct: 443 LLARRGRTKSLEEKQTLLKQMRTMRSIDAFDPNFRRLDYVRYADDFVVFISGSSKDALFI 502
Query: 301 REECRGVLEGSLKLRLNMDKTKIPHV-NDGFIFLGHRLIRKRSR------YGEMRVVST 352
R + L+ + L LN+DKT I ++ + + FLG L + + +G R++ T
Sbjct: 503 RNNLKDYLKVNCGLELNVDKTAISNLATEKWKFLGAELSKIKLNANWLVSHGRKRIIGT 561
>gb|AAA32006.2| cytochrome c oxidase subunit I [Podospora anserina]
Length = 787
Score = 177 bits (449), Expect = 9e-43
Identities = 115/350 (32%), Positives = 177/350 (50%), Gaps = 59/350 (16%)
Query: 44 SSKGAHTPGVD-----GVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKL 98
S G TPGVD G++K + + ++L S ++ P RRVYIPK+NGK+
Sbjct: 203 SEPGNMTPGVDSETLDGISKEWFEK--------ISEQLKSEQFRFRPTRRVYIPKANGKM 254
Query: 99 RPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETR 158
RPLGI + RD+IVQ +E + E FH+ S+GFRP R H A+ T++
Sbjct: 255 RPLGIASPRDKIVQEVFRAILEQVLEPRFHSSSHGFRPGRGCHSALATIRYW------NG 308
Query: 159 GRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVP 218
+W IEGD+ +FD + H +L K + + D RF+ L WK +KAG+++ +++ GVP
Sbjct: 309 IKWFIEGDIKGFFDNIDHHILEKLLVKHFQDQRFIDLYWKMVKAGYVEFDKDKSSIIGVP 368
Query: 219 QGGVISPLLSNIMLNEFDQYL-------HERYLSGK-ARKDRWYWNNSIQRGRSTAVREN 270
QGG+ SP+LSN++LNE D+++ +E+ GK K+ Y + G+ T +
Sbjct: 369 QGGIASPILSNLVLNELDEFVQNIVDEFNEKLKGGKHTSKNPAYVVIDSRIGKITRLERK 428
Query: 271 WQWK-------------------------------PAVAYCRYADDFVLIVKGTKAQVEA 299
+ K + Y RYADD+++ V G+ A
Sbjct: 429 LKSKGQELDSGRKLERMKLIKVRATMPSMIPNPDLAEIYYVRYADDWLIGVAGSSETARA 488
Query: 300 IREECRGVLEGSLKLRLNMDKTKIPHVN-DGFIFLGHRLIRKRSRYGEMR 348
I+E L+ LKL L+M+KT I + + D FLG + R S GE++
Sbjct: 489 IKERIAAYLKDILKLELSMEKTLITNASEDKAYFLGTEIQRISSVKGEIK 538
>ref|YP_796487.1| maturase MatR [Lactococcus lactis subsp. cremoris SK11]
gb|ABA47388.1| group II intron-encoded maturase [Lactococcus lactis]
gb|ABJ74056.1| maturase MatR [Lactococcus lactis subsp. cremoris SK11]
Length = 599
Score = 177 bits (449), Expect = 9e-43
Identities = 112/352 (31%), Positives = 180/352 (51%), Gaps = 43/352 (12%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGV-DGVNKTMLQARLAVELQILRDELLSGHYQ 82
RL R + +P+ A + S+KGA T G+ D + ++ +Q L+D G Y
Sbjct: 25 RLYRYLLRPDIYYVAYQNLYSNKGASTKGILDDTADGFSEEKIKKIIQSLKD----GTYY 80
Query: 83 PLPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVH 141
P P RR+YI K N K +RPLGIP D+++Q A+ + +E I+E F +S+GFRP+RS H
Sbjct: 81 PQPVRRMYIAKKNSKKMRPLGIPTFTDKLIQEAVRIILESIYEPVFEDVSHGFRPQRSCH 140
Query: 142 HAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIK 201
A++T+K + RW +EGD+ FD + H L+ + +I D + L++K +K
Sbjct: 141 TALKTIKREFGGA-----RWFVEGDIKGCFDNIDHVTLIGLINLKIKDMKMSQLIYKFLK 195
Query: 202 AGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY----------------------L 239
AG+++ + G PQGG++SPLL+NI L+E D++ L
Sbjct: 196 AGYLENWQYHKTYSGTPQGGILSPLLANIYLHELDKFVLQLKMKFDRESPERITPEYREL 255
Query: 240 HE---------RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIV 290
H + L G+ K + +R R + Q + Y RYADDF++ V
Sbjct: 256 HNEIKRISHRLKKLEGE-EKAKVLLEYQEKRKRLPTLPCTSQTNKVLKYVRYADDFIISV 314
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRS 342
KG+K + I+E+ + + LK+ + +KT I H + FLG+ + +RS
Sbjct: 315 KGSKEDCQWIKEQLKLFIHNKLKMEFSEEKTLITHSSQPARFLGYDIRVRRS 366
>ref|NP_952009.1| group II intron, maturase [Geobacter sulfurreducens PCA]
ref|NP_953517.1| group II intron, maturase [Geobacter sulfurreducens PCA]
gb|AAR34282.1| group II intron, maturase [Geobacter sulfurreducens PCA]
gb|AAR35844.1| group II intron, maturase [Geobacter sulfurreducens PCA]
Length = 434
Score = 177 bits (448), Expect = 1e-42
Identities = 118/330 (35%), Positives = 165/330 (50%), Gaps = 44/330 (13%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
+ LL I E + A + ++KGA PGVDGV R +R L +G YQ
Sbjct: 14 EHLLERILATENMDLAWKRVRANKGA--PGVDGVTIDAFPERFRPLWGDIRASLATGTYQ 71
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P RV IPK G RPLGIP + DR++Q+A + PI++ +F S+GFRP RS H+
Sbjct: 72 PQPVLRVEIPKPTGGTRPLGIPTVLDRLIQQATAQVLTPIFDPEFSASSFGFRPGRSAHN 131
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
A+R QL + R ++ DL+ +FDTV+H LLM V RR+ D R +TL+ + ++A
Sbjct: 132 AVR----QLREYLRQGYRIAVDIDLAKFFDTVNHDLLMTMVGRRVRDKRVLTLIGRYLRA 187
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262
G G GVPQGG +SPLL+NI+L+ D+ L R
Sbjct: 188 GVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELESR-------------------- 227
Query: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTK 322
+ RYADDFV++VK +A E + R L LKL +N DK+K
Sbjct: 228 -------------GHKFVRYADDFVILVKSERAG-ERVMGSVRKYLTNKLKLTVNEDKSK 273
Query: 323 IPHVND----GFIFLGHRLIRKRSRYGEMR 348
+ D GF+F G +++ Y E R
Sbjct: 274 VARSGDLSFLGFVFKGTKILWSDQAYKEFR 303
>ref|NP_950594.1| retron-type reverse transcriptase [Onion yellows phytoplasma OY-M]
dbj|BAD04427.1| retron-type reverse transcriptase [Onion yellows phytoplasma OY-M]
Length = 586
Score = 177 bits (448), Expect = 1e-42
Identities = 113/337 (33%), Positives = 180/337 (53%), Gaps = 29/337 (8%)
Query: 44 SSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGI 103
++KGA TPG+DG + L + +L+ E ++ Y P P +R++I K N K+RPLGI
Sbjct: 54 ANKGAGTPGIDGNSIDSLNLK---KLERYHKEYINNKYNPKPVKRIFISKDNDKVRPLGI 110
Query: 104 PALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVI 163
P ++DRIVQ+++ + P +E+ F S+GFR ++S AI+ VK + ++I
Sbjct: 111 PTIKDRIVQKSLEQLLTPYFENQFLEWSFGFRTKKSCLDAIKRVKQRFQGID-----YII 165
Query: 164 EGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVI 223
+ DL YFDT++H LMK +R+ I + ++ + K +KAG + G+ + G PQGG+I
Sbjct: 166 KIDLKGYFDTINHETLMKTLRKFIRKNKTLSTINKWLKAGFMKDGIKYESLSGSPQGGII 225
Query: 224 SPLLSNIMLNEFDQYLHERYLSG-KARKDRWYWNNSIQRGRSTAV----RENWQWKPAVA 278
SPLL+N+ L+ D + E G RK + + +G + + N K V
Sbjct: 226 SPLLANVYLHYIDIKMDELIKEGTPIRKANPEYGKAYHQGMHHKLGIDRQINLNPKTRVE 285
Query: 279 YCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGH--- 335
Y RYADDF++ +KG + E I+ + LE LKL ++ DK+KI N G FL +
Sbjct: 286 YIRYADDFIIGIKGKYDKAETIKNQVTQWLEQDLKLTISKDKSKIVKANKGTRFLSYMYM 345
Query: 336 -----------RLIRKRSRYGEMRVVSTIPQEKARNF 361
+ K+S G RV +P+ KA+ +
Sbjct: 346 VKVKPTSSKLTKKTHKKSLNG--RVQIQVPKAKAKEY 380
>ref|YP_066859.1| probable reverse transcriptase/maturase family protein
[Desulfotalea psychrophila LSv54]
emb|CAG37869.1| probable reverse transcriptase/maturase family protein
[Desulfotalea psychrophila LSv54]
Length = 439
Score = 176 bits (447), Expect = 1e-42
Identities = 119/329 (36%), Positives = 173/329 (52%), Gaps = 42/329 (12%)
Query: 44 SSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGI 103
S+ GA G+DG + L V L L EL YQP P RRV IPK NG +R LGI
Sbjct: 27 SANGA--AGIDGQSVKDFAESLDVNLDRLLTELREKSYQPQPVRRVEIPKENGGIRLLGI 84
Query: 104 PALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVI 163
PA+RDR+VQ+A+L ++PI++ DFH SYG+RP RS H AI + + +WV+
Sbjct: 85 PAVRDRVVQQALLDILQPIFDPDFHPSSYGYRPGRSCHQAITKATMFIRKYDR---KWVV 141
Query: 164 EGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVI 223
+ DLS FDT+ H L++ ++ RRI D + LL K +K+G + ++A+ G PQGGVI
Sbjct: 142 DMDLSKCFDTLDHDLILSSLSRRIKDGSILGLLKKILKSGVMTDEGWQASEVGSPQGGVI 201
Query: 224 SPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYA 283
SPL++NI L++FDQ++ +R RYA
Sbjct: 202 SPLIANIYLDQFDQFMKKR---------------------------------GHRIVRYA 228
Query: 284 DDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
DD +LI+ +K+ + + LE L L +N +KT I H G FLG + K +R
Sbjct: 229 DD-ILILCSSKSAAKNALLQASCFLEKGLLLTVNREKTHICHSWSGVAFLGVSIHSKYTR 287
Query: 344 YGEMRVVSTIPQEKA---RNFAASLTALL 369
+ ++ S + KA RN +L A++
Sbjct: 288 IQKGKIGSFKEKVKALTRRNSGKNLEAVI 316
>ref|ZP_01426581.1| RNA-directed DNA polymerase [Herpetosiphon aurantiacus ATCC 23779]
gb|EAU16635.1| RNA-directed DNA polymerase [Herpetosiphon aurantiacus ATCC 23779]
Length = 595
Score = 175 bits (444), Expect = 3e-42
Identities = 115/365 (31%), Positives = 187/365 (51%), Gaps = 46/365 (12%)
Query: 20 LRIQRLLRLITQPEWLAEAARITLSSKGAHTPG-----VDGVNKTMLQARLAVELQILRD 74
L + R+ R++ + A + +GA T G +DG++ + +A
Sbjct: 19 LPLARVYRILFNEDLYLRAYGRLATKQGALTKGSTDETIDGMSMAKIHRIIA-------- 70
Query: 75 ELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGF 134
+L Y+ P RRVYIPK+ GK RPLG+P D++VQ + ++ ++ S+GF
Sbjct: 71 DLRRETYRWTPVRRVYIPKATGKTRPLGVPTWSDKLVQEVLRSILDAYYDPQMSDHSHGF 130
Query: 135 RPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMT 194
RP R H A++ ++ T RW IEGD++ YFDT++H L+ + +RI D RF+
Sbjct: 131 RPNRGCHTALKAIQRCWTGT-----RWFIEGDIAQYFDTINHTTLLTILAKRIHDGRFLR 185
Query: 195 LLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE----RYLSGKARK 250
L+ ++AG++ ++ G PQGGVISPLL+NI L+EFDQ++ Y G+ RK
Sbjct: 186 LIQTLLQAGYLHDWVYHPTLSGTPQGGVISPLLANIYLHEFDQFVEHTLIPAYTKGQRRK 245
Query: 251 DRWYWNNSIQR----------GRSTAVRENWQWKPA----------VAYCRYADDFVLIV 290
+ QR T + + + P+ + Y RYADDF+L
Sbjct: 246 VNPAYAQMEQRISKLRRQREYASVTPLLKELRTLPSRDVHDPDYRRLRYVRYADDFLLGF 305
Query: 291 KGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV-NDGFIFLGHRLIRKRS---RYGE 346
GTK + EAI+++ L L+L+L+ KT I H +D FLG+ ++ +++ + G
Sbjct: 306 AGTKVEAEAIKQQINVWLYDHLQLKLSTQKTLITHASSDPAHFLGYDIVTQQANSKQTGN 365
Query: 347 MRVVS 351
R+V+
Sbjct: 366 RRIVN 370
>ref|ZP_01621214.1| hypothetical protein L8106_27147 [Lyngbya sp. PCC 8106]
ref|ZP_01623137.1| hypothetical protein L8106_18297 [Lyngbya sp. PCC 8106]
gb|EAW34831.1| hypothetical protein L8106_18297 [Lyngbya sp. PCC 8106]
gb|EAW36909.1| hypothetical protein L8106_27147 [Lyngbya sp. PCC 8106]
Length = 566
Score = 174 bits (441), Expect = 7e-42
Identities = 111/317 (35%), Positives = 168/317 (52%), Gaps = 36/317 (11%)
Query: 21 RIQRLLRLITQP--EWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLS 78
+++ L++L+ + L R+T ++G T G+DG T R+ + ++ ++D +
Sbjct: 48 KVRSLMKLMIRSYSNLLLSVRRVTQENEGKSTAGIDGQTATTPALRVKL-IKEMKDYTIG 106
Query: 79 GHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPER 138
Q PARRVYIPK+NGK RPLGIP +++RI Q + A+EP WES SYGFRP R
Sbjct: 107 ---QAQPARRVYIPKANGKQRPLGIPTVKNRIAQAIIKNALEPSWESRMSGSSYGFRPGR 163
Query: 139 SVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWK 198
S H AI+ +L G RWV++ D+ FD + H ++K I + L+ +
Sbjct: 164 SCHDAIQHTWTRLNKQG--NDRWVLDADIKGAFDNISHNFILKT----IGEIPGRELIKQ 217
Query: 199 TIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE-RYLSGKARKDRWYWNN 257
+KAG+++ +F G PQGG+ISPLL+NI L+ +Q+L + + GK + R
Sbjct: 218 WLKAGYVESEIFHETESGTPQGGIISPLLANIALDGIEQFLSQFKKRQGKNKSPR----- 272
Query: 258 SIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLN 317
P + RYADDF++ + T +E I + +L+ + L LN
Sbjct: 273 ----------------APKYGFVRYADDFIITAE-TLMDIEEIIPSVKELLK-TRGLELN 314
Query: 318 MDKTKIPHVNDGFIFLG 334
DKT I HV GF FLG
Sbjct: 315 EDKTNIVHVEQGFNFLG 331
>ref|YP_717176.1| hypothetical protein MapooMp73 [Marchantia polymorpha]
Length = 743
Score = 174 bits (441), Expect = 7e-42
Identities = 110/303 (36%), Positives = 169/303 (55%), Gaps = 19/303 (6%)
Query: 47 GAHTPGVDGVNKTMLQARLAVELQILRDELLSGH--YQPLPARRVYIPKSNGKLRPLGIP 104
G+ PG G+ R +LQ LRD +L Y+ + + P K+ LGIP
Sbjct: 272 GSMNPGTHGLTIDGTSFR---KLQALRDAVLDSESPYEWGGTKIITKPGKREKIS-LGIP 327
Query: 105 ALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIE 164
+DRIVQ + M +EPI+ES F S+G+RP RS H A+RT++ +D +T W++
Sbjct: 328 CFQDRIVQEVLKMLLEPIYESIFSRRSHGWRPGRSAHTALRTIR---SDFKKTN--WIVP 382
Query: 165 GDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAG-HIDVGLFRAASEGVPQGGVI 223
G+++ FD V+H +L +RR+I D + + L+ +KA H+ G ++ G PQG ++
Sbjct: 383 GNINKLFDIVNHGILCHIMRRKIRDKKLLKLIAGGLKAKIHMPYGNIEESNLGTPQGRIL 442
Query: 224 SPLLSNIMLNEFDQYLHER---YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPA---V 277
SP+LSNI L+EFD ++ ER Y G+ W + R +R + + P +
Sbjct: 443 SPILSNIYLHEFDIWIEERIQQYNLGRKETRSWVLLRKQGKMRKARLRSD-PFNPLYRRM 501
Query: 278 AYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL 337
Y RY DDF++ ++G + +AIR+EC L LKL LNM+KT I H++ G FLGHR+
Sbjct: 502 EYRRYGDDFLIAIRGPLSDAKAIRQECETFLREKLKLLLNMEKTHIKHISVGIPFLGHRI 561
Query: 338 IRK 340
R+
Sbjct: 562 GRR 564
>emb|CAA38778.1| reverse transcriptase homologue COI ialpha grp II protein
[Podospora anserina]
Length = 788
Score = 174 bits (441), Expect = 7e-42
Identities = 114/350 (32%), Positives = 176/350 (50%), Gaps = 59/350 (16%)
Query: 44 SSKGAHTPGVD-----GVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKL 98
S G TP VD G++K + + ++L S ++ P RRVYIPK+NGK+
Sbjct: 204 SEPGNMTPRVDSETLDGISKEWFEK--------ISEQLKSEQFRFRPTRRVYIPKANGKM 255
Query: 99 RPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETR 158
RPLGI + RD+IVQ +E + E FH+ S+GFRP R H A+ T++
Sbjct: 256 RPLGIASPRDKIVQEVFRAILEQVLEPRFHSSSHGFRPGRGCHSALATIRYW------NG 309
Query: 159 GRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVP 218
+W IEGD+ +FD + H +L K + + D RF+ L WK +KAG+++ +++ GVP
Sbjct: 310 IKWFIEGDIKGFFDNIDHHILEKLLVKHFQDQRFIDLYWKMVKAGYVEFDKDKSSIIGVP 369
Query: 219 QGGVISPLLSNIMLNEFDQYL-------HERYLSGK-ARKDRWYWNNSIQRGRSTAVREN 270
QGG+ SP+LSN++LNE D+++ +E+ GK K+ Y + G+ T +
Sbjct: 370 QGGIASPILSNLVLNELDEFVQNIVDEFNEKLKGGKHTSKNPAYVVIDSRIGKITRLERK 429
Query: 271 WQWK-------------------------------PAVAYCRYADDFVLIVKGTKAQVEA 299
+ K + Y RYADD+++ V G+ A
Sbjct: 430 LKSKGQELDSGRKLERMKLIKVRATMPSMIPNPDLAKIYYVRYADDWLIGVAGSSETARA 489
Query: 300 IREECRGVLEGSLKLRLNMDKTKIPHVN-DGFIFLGHRLIRKRSRYGEMR 348
I+E L+ LKL L+M+KT I + + D FLG + R S GE++
Sbjct: 490 IKERIAAYLKDILKLELSMEKTLITNASEDKAYFLGTEIQRISSVKGEIK 539
>ref|NP_074925.1| orf787 [Podospora anserina]
Length = 787
Score = 174 bits (441), Expect = 7e-42
Identities = 114/350 (32%), Positives = 176/350 (50%), Gaps = 59/350 (16%)
Query: 44 SSKGAHTPGVD-----GVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKL 98
S G TP VD G++K + + ++L S ++ P RRVYIPK+NGK+
Sbjct: 203 SEPGNMTPRVDSETLDGISKEWFEK--------ISEQLKSEQFRFRPTRRVYIPKANGKM 254
Query: 99 RPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETR 158
RPLGI + RD+IVQ +E + E FH+ S+GFRP R H A+ T++
Sbjct: 255 RPLGIASPRDKIVQEVFRAILEQVLEPRFHSSSHGFRPGRGCHSALATIRYW------NG 308
Query: 159 GRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVP 218
+W IEGD+ +FD + H +L K + + D RF+ L WK +KAG+++ +++ GVP
Sbjct: 309 IKWFIEGDIKGFFDNIDHHILEKLLVKHFQDQRFIDLYWKMVKAGYVEFDKDKSSIIGVP 368
Query: 219 QGGVISPLLSNIMLNEFDQYL-------HERYLSGK-ARKDRWYWNNSIQRGRSTAVREN 270
QGG+ SP+LSN++LNE D+++ +E+ GK K+ Y + G+ T +
Sbjct: 369 QGGIASPILSNLVLNELDEFVQNIVDEFNEKLKGGKHTSKNPAYVVIDSRIGKITRLERK 428
Query: 271 WQWK-------------------------------PAVAYCRYADDFVLIVKGTKAQVEA 299
+ K + Y RYADD+++ V G+ A
Sbjct: 429 LKSKGQELDSGRKLERMKLIKVRATMPSMIPNPDLAKIYYVRYADDWLIGVAGSSETARA 488
Query: 300 IREECRGVLEGSLKLRLNMDKTKIPHVN-DGFIFLGHRLIRKRSRYGEMR 348
I+E L+ LKL L+M+KT I + + D FLG + R S GE++
Sbjct: 489 IKERIAAYLKDILKLELSMEKTLITNASEDKAYFLGTEIQRISSVKGEIK 538
>ref|NP_799494.1| putative reverse transcriptase [Bacillus megaterium]
gb|AAO52785.1| putative reverse transcriptase [Bacillus megaterium]
Length = 549
Score = 174 bits (441), Expect = 7e-42
Identities = 110/326 (33%), Positives = 173/326 (53%), Gaps = 27/326 (8%)
Query: 21 RIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGH 80
++QRLL L ++ L R+T + G TPGVDG + R+ + Q+++ +
Sbjct: 49 KLQRLL-LRSKANLLLSIRRVTQQNNGKRTPGVDGYTASKPNERIKLYQQLVKCNVF--R 105
Query: 81 YQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSV 140
++P PA+R +IPK NGKLRPLGIP +RDR+ Q + A+EP WE F SYGFRP+RS
Sbjct: 106 HRPKPAKRTFIPKKNGKLRPLGIPTMRDRVYQNVVKNALEPQWEVKFEPTSYGFRPKRST 165
Query: 141 HHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTI 200
H AI + +L ++ +WV EGD FD ++H +M+ + S TL+ + +
Sbjct: 166 HDAISNLFNKLNT--NSKKKWVFEGDFLGCFDHLNHNWIME----QTSMFPGNTLIKRWL 219
Query: 201 KAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQ 260
G+I+ + +EG PQGG++SPLL+NI L ++ + G K + N +
Sbjct: 220 NMGYIEQDMLHTTTEGTPQGGIVSPLLANIALCGMEEEI------GIVYKKTYKSNGGYK 273
Query: 261 RGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDK 320
K + YADDFV++ + TK Q E++ + L + L+ +K
Sbjct: 274 IDP----------KCKIGRVLYADDFVIVTE-TKEQAESMYQNLTPYLR-KRGITLSKEK 321
Query: 321 TKIPHVNDGFIFLGHRLIRKRSRYGE 346
T++ H+ DGF FLG L + + G+
Sbjct: 322 TRVTHIEDGFDFLGFSLRQYNTGQGK 347
>gb|AAC09431.1| coxII intron2 ORF [Marchantia polymorpha]
Length = 827
Score = 174 bits (441), Expect = 7e-42
Identities = 110/303 (36%), Positives = 169/303 (55%), Gaps = 19/303 (6%)
Query: 47 GAHTPGVDGVNKTMLQARLAVELQILRDELLSGH--YQPLPARRVYIPKSNGKLRPLGIP 104
G+ PG G+ R +LQ LRD +L Y+ + + P K+ LGIP
Sbjct: 356 GSMNPGTHGLTIDGTSFR---KLQALRDAVLDSESPYEWGGTKIITKPGKREKIS-LGIP 411
Query: 105 ALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIE 164
+DRIVQ + M +EPI+ES F S+G+RP RS H A+RT++ +D +T W++
Sbjct: 412 CFQDRIVQEVLKMLLEPIYESIFSRRSHGWRPGRSAHTALRTIR---SDFKKTN--WIVP 466
Query: 165 GDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAG-HIDVGLFRAASEGVPQGGVI 223
G+++ FD V+H +L +RR+I D + + L+ +KA H+ G ++ G PQG ++
Sbjct: 467 GNINKLFDIVNHGILCHIMRRKIRDKKLLKLIAGGLKAKIHMPYGNIEESNLGTPQGRIL 526
Query: 224 SPLLSNIMLNEFDQYLHER---YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPA---V 277
SP+LSNI L+EFD ++ ER Y G+ W + R +R + + P +
Sbjct: 527 SPILSNIYLHEFDIWIEERIQQYNLGRKETRSWVLLRKQGKMRKARLRSD-PFNPLYRRM 585
Query: 278 AYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRL 337
Y RY DDF++ ++G + +AIR+EC L LKL LNM+KT I H++ G FLGHR+
Sbjct: 586 EYRRYGDDFLIAIRGPLSDAKAIRQECETFLREKLKLLLNMEKTHIKHISVGIPFLGHRI 645
Query: 338 IRK 340
R+
Sbjct: 646 GRR 648
>ref|ZP_01247610.1| RNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
gb|EAS57602.1| RNA-directed DNA polymerase [Flavobacterium johnsoniae UW101]
Length = 465
Score = 173 bits (439), Expect = 1e-41
Identities = 111/325 (34%), Positives = 172/325 (52%), Gaps = 41/325 (12%)
Query: 16 TDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDE 75
T+ L +LL LI P + A + S+KG+ G+D ++ LQ L + L +
Sbjct: 37 TEVHLGQGKLLELILNPSNMNLAYKRVRSNKGSF--GIDKLSTEHLQEWLLKHKESLIES 94
Query: 76 LLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFR 135
L G Y+P RRV IPK GK R LGIP + DR+VQ++++ + PI+E +FHT S+GFR
Sbjct: 95 LEKGKYKPQAVRRVEIPKEGGKTRSLGIPTVVDRLVQQSIIQILTPIYEQEFHTSSHGFR 154
Query: 136 PERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTL 195
P+R H A++ V+ L D +V++ DL +FDTV+H L++ + +++ D R ++L
Sbjct: 155 PKRGCHTALKEVESHLND----EYCYVVDLDLEKFFDTVNHSRLIELLSKKVKDPRVISL 210
Query: 196 LWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYW 255
+ K ++AG + V F + GVPQGG +SPLLSNIML+E D+ L R
Sbjct: 211 IHKYLRAGVVVVNKFEESVLGVPQGGPLSPLLSNIMLHELDKELARR------------- 257
Query: 256 NNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLR 315
+ RYADD ++ K +A + ++E +E L LR
Sbjct: 258 --------------------GHRFVRYADDCLIFCKSKRACLR-VKESITAFIESVLYLR 296
Query: 316 LNMDKTKIPHVNDGFIFLGHRLIRK 340
+N +KT + ++ G FLG+ K
Sbjct: 297 VNKEKTTVGYIR-GKKFLGYSFYNK 320
>ref|YP_520785.1| hypothetical protein DSY4552 [Desulfitobacterium hafniense Y51]
dbj|BAE86341.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 437
Score = 173 bits (439), Expect = 1e-41
Identities = 115/327 (35%), Positives = 167/327 (51%), Gaps = 41/327 (12%)
Query: 9 KLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVE 68
K+A T+ + + + LL I + +A + +KGA G+DG+ L L
Sbjct: 6 KMAETDNTNTNKQTEGLLEQILSDANIDKAYKQVKRNKGAG--GIDGMQVNELSHFLKDH 63
Query: 69 LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFH 128
+ L +L G Y+P P RRV IPK NGK R LGIP + DR++Q+A+ + PI+E F
Sbjct: 64 KEELVKSILEGKYRPQPVRRVEIPKENGKTRKLGIPTVVDRLIQQAITQVLSPIFEKQFS 123
Query: 129 TLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRIS 188
S+GFRP RS H A+R + +TD G +V++ DL YFDTV+ L++ + I
Sbjct: 124 DNSFGFRPNRSAHDALRRCQKNITD-GYV---YVVDMDLEKYFDTVNQSKLIQILSETIK 179
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D R ++L+ K ++AG + GLF + EGVPQGG +SP+L NIMLNE D L R
Sbjct: 180 DGRVISLIHKFLRAGVMVKGLFEESLEGVPQGGPLSPILGNIMLNECDHELERR------ 233
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
+ RYADD ++ K KA + E +
Sbjct: 234 ---------------------------GHRFVRYADDMMIFCKSKKAASRTL-EHILPFI 265
Query: 309 EGSLKLRLNMDKTKIPHVNDGFIFLGH 335
EG L L++N +KT + +VN FLG+
Sbjct: 266 EGKLFLKVNREKTTVAYVNK-VKFLGY 291
>dbj|GAA00503.1| unnamed protein product [Pelotomaculum thermopropionicum SI]
Length = 428
Score = 172 bits (437), Expect = 2e-41
Identities = 125/363 (34%), Positives = 192/363 (52%), Gaps = 46/363 (12%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+ QRKL A + + R L + + + L A + ++KGA PG DG + ++
Sbjct: 12 VRNFQRKLYVKAKQEKTFRFYSLYDKLYREDVLQYAWQQCRANKGA--PGADGQSFKDIE 69
Query: 63 ARLAVE--LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
++ VE L+ + +EL +G Y+P+P RRVYI K +G RPLGIP ++DRI Q A L ++
Sbjct: 70 EKVGVERFLKEIAEELRNGTYRPMPVRRVYILKPDGSQRPLGIPTIKDRIAQMACLTVIQ 129
Query: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
PI+E+DF SYGFRP+R+ H AI + + G T V + DL+ FD++ HRL+M
Sbjct: 130 PIFEADFLDCSYGFRPKRNAHQAIGAITENIKQ-GFTA---VYDADLTKCFDSIQHRLIM 185
Query: 181 KAVRRRISDARFMTLLWKTIKAGHIDVG---LFRAASEGVPQGGVISPLLSNIMLNEFDQ 237
++ RI+D + + L+ ++A ++ G R +G PQGGVISPLL+NI+LN D+
Sbjct: 186 DSLAERITDGKVLRLIKGWLEAPIVEPGGPKQGRKNYQGTPQGGVISPLLANIVLNRLDR 245
Query: 238 YLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQV 297
H R RE + + RYADDFV++ +
Sbjct: 246 LWH----------------------RPGGPRERYNAR----LVRYADDFVVLARFIG--- 276
Query: 298 EAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFI--FLGHRLIRKRSRYGEMRVVSTIPQ 355
E I+ E ++ S+ L LN KT+I +N G I FLG+ + R + R ++ P
Sbjct: 277 EPIKNELESIIT-SMGLNLNEKKTRILDLNKGDILNFLGYSIRISRDK---NRRITIKPS 332
Query: 356 EKA 358
+KA
Sbjct: 333 DKA 335
>ref|NP_054460.1| hypothetical protein MapooMp68 [Marchantia polymorpha]
sp|P38478|YMF40_MARPO Hypothetical 57.7 kDa protein in 18S rRNA intron 1 (ORF 502)
gb|AAC09457.1| 18S ribosomal RNA intron 1 ORF [Marchantia polymorpha]
Length = 502
Score = 172 bits (436), Expect = 3e-41
Identities = 117/332 (35%), Positives = 171/332 (51%), Gaps = 36/332 (10%)
Query: 29 ITQPEWLAEAARITLSSKGAHTPGVDGVNKT-MLQARLAVELQILRDELLSGHYQPLPAR 87
+ PE A + S G PG D QA + ++ L+DE +Q P+R
Sbjct: 9 LLDPEIFRLAYELKKSKSGNMKPGADKETLDGFSQAYVEKVVRQLKDE----SFQFRPSR 64
Query: 88 RVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTV 147
R +IPK++GKLR LGIP+ RD+IVQ M +EP++E F S+GFRP RS H A+R +
Sbjct: 65 REFIPKADGKLRSLGIPSPRDKIVQEVMRRILEPVFEPRFLDSSHGFRPHRSPHTALRQI 124
Query: 148 KLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDV 207
+ T W+IEGD+ YFD + H LL + + D R + L WK ++AG+++
Sbjct: 125 RRW------TGTSWMIEGDIKGYFDNIDHHLLAGFIAELVKDQRLLALYWKLVRAGYVNQ 178
Query: 208 GLFRA-ASEGVPQGGVISPLLSNIMLNEFDQYLHE---RYLSG-----------KARKDR 252
G GVPQG ++SPLLSNI L++FD ++ E +Y + KAR
Sbjct: 179 GKAEPHLLTGVPQGRILSPLLSNIYLHQFDLFMEEIKVKYTTTGALSKNNPIYLKARNKY 238
Query: 253 WYWNNSIQRGRSTAVRE---------NWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREE 303
+ S++ + +R Q V Y RYADD+V+ V G KA I+EE
Sbjct: 239 YKLVKSLKASSAEIIRARRDMLKMTYGIQTGSRVRYVRYADDWVIGVTGPKALAVQIKEE 298
Query: 304 CRGVLEGSLKLRLNMDKTKIPHVN-DGFIFLG 334
L+ LKL L +KT+I +++ +FLG
Sbjct: 299 VSTFLQEKLKLSLQAEKTRITNLSRSEALFLG 330
>gb|EAJ69265.1| unknown [environmental sequence]
Length = 392
Score = 172 bits (435), Expect = 4e-41
Identities = 109/299 (36%), Positives = 160/299 (53%), Gaps = 39/299 (13%)
Query: 45 SKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIP 104
+KGA G+DG + + + L EL L EL + YQP P RRV IPK G R LGIP
Sbjct: 17 AKGA--AGIDGQSLSAFASNLDNELSQLLLELKTKRYQPQPVRRVIIPKDGGGERLLGIP 74
Query: 105 ALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIE 164
+RDR+VQ+ + + PI+E FH S+G+RP+RS H AI L + G R V++
Sbjct: 75 TVRDRVVQQCLNDLLTPIFEEQFHPSSFGYRPKRSCHDAINKATLFIRRYGR---RHVVD 131
Query: 165 GDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVIS 224
DLS FD + H L++++++RR+ D + L+ + +++G + G ++ G PQGGVIS
Sbjct: 132 MDLSKCFDKLDHTLIIRSIKRRVRDGSVLNLITQFLQSGAMVDGHWQQTETGSPQGGVIS 191
Query: 225 PLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYAD 284
PL++NI L+ FD+ + QRG RYAD
Sbjct: 192 PLIANIYLDAFDEEMK-------------------QRGHRIV--------------RYAD 218
Query: 285 DFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
D +LI+ ++A E + + +LE LKL +N DKT I H +DG FLG + K +R
Sbjct: 219 D-ILILCSSRAAAENAKAQATHILEEKLKLSVNTDKTHITHSDDGVKFLGVEIGTKHTR 276
>ref|YP_517917.1| hypothetical protein DSY1684 [Desulfitobacterium hafniense Y51]
dbj|BAE83473.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 431
Score = 172 bits (435), Expect = 4e-41
Identities = 108/305 (35%), Positives = 156/305 (51%), Gaps = 40/305 (13%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
+ L I E L +A R +KGA G+DG+ L L L + L G Y+
Sbjct: 14 EELFEQILSSENLNQAYRQVKKNKGAG--GIDGMQVDELLPYLRDHKDELLESLREGTYR 71
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P RRV IPK NGK R LGIP + DR++Q+A+ + PI+E F S+GFRP RS H
Sbjct: 72 PTPVRRVEIPKENGKTRKLGIPTVVDRLIQQAIAQILSPIFEKQFSESSFGFRPNRSAHD 131
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
A++ + +T ++V++ DL YFDTV+ L++ + RI D R ++L+ K ++A
Sbjct: 132 ALKKSQSYIT----AGYKYVVDMDLEKYFDTVNQSKLIQILSERIKDGRVISLIHKYLRA 187
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262
G + G+F + EGVPQGG +SPLL NIMLNE D L +R
Sbjct: 188 GIMVEGMFEESPEGVPQGGPLSPLLGNIMLNECDHELEKR-------------------- 227
Query: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTK 322
+ RYADD ++ + KA + E +E L L++N +K+K
Sbjct: 228 -------------GHRFVRYADDLMIFCRSRKA-AQRTMEHIVPYIEKKLFLKVNREKSK 273
Query: 323 IPHVN 327
+ HVN
Sbjct: 274 VTHVN 278
>ref|ZP_01143676.1| group II intron-encoding maturase [Geobacter uraniumreducens Rf4]
gb|EAR34403.1| group II intron-encoding maturase [Geobacter uraniumreducens Rf4]
Length = 467
Score = 172 bits (435), Expect = 4e-41
Identities = 108/316 (34%), Positives = 163/316 (51%), Gaps = 45/316 (14%)
Query: 8 RKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAV 67
RK A W P + +++++ +A +R+ + +KGA PGVD + T L+ L
Sbjct: 37 RKAAHW----PEAATGLMEKIVSRGNMMAAYSRV-MRNKGA--PGVDNMPVTALKGYLQE 89
Query: 68 ELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDF 127
E +R+ELL+G Y P P R+V IPK G R LGIP + DR++Q+A+ + P+++ F
Sbjct: 90 EWPRIREELLTGTYHPQPVRKVEIPKPGGGTRMLGIPTVLDRLIQQAVHQVLSPLFDPGF 149
Query: 128 HTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRI 187
S+GFRP RS H AI+ + + E+ RWV++ DL +FD VHH LM V+R++
Sbjct: 150 SISSHGFRPGRSAHQAIKAARKYV----ESGLRWVVDIDLEKFFDRVHHDTLMSLVKRKV 205
Query: 188 SDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGK 247
D ++L+ +KAG ++ G+ EG PQGG +SPLLSNI+L+E D+ L R
Sbjct: 206 GDRLVLSLIDSYLKAGILEGGVTSPRLEGTPQGGPLSPLLSNILLDELDKKLERR----- 260
Query: 248 ARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGV 307
+CRYADD + V T+ E + G
Sbjct: 261 ----------------------------GHKFCRYADDANIYV-ATRRSGERVMASITGY 291
Query: 308 LEGSLKLRLNMDKTKI 323
L LKL +N K+ +
Sbjct: 292 LSERLKLTVNQGKSAV 307
>ref|ZP_01140758.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
gb|EAR37380.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
Length = 522
Score = 172 bits (435), Expect = 4e-41
Identities = 128/367 (34%), Positives = 191/367 (52%), Gaps = 49/367 (13%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+S ++ KL++ A +P R L I + + L A ++KGA PGVDGV+ ++
Sbjct: 103 VSLLRWKLSSKAKREPQFRFYALYDRIHRRDVLETAWLRVKANKGA--PGVDGVSIESIE 160
Query: 63 AR---LAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
R ++ L +++ L + +Y+P P RRVYI K NGKLRPLGIP +RDRIVQ A+L+ +
Sbjct: 161 VRADGISGYLDEIQESLRTKNYKPSPVRRVYITKPNGKLRPLGIPCVRDRIVQAAVLLIL 220
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPI+E DF S+GFRP+R H A+ V L + + V + DLSSYFD++ H L
Sbjct: 221 EPIFEVDFLDCSHGFRPKRRPHGALDQVGNNL----QLGRQEVYDADLSSYFDSIPHEHL 276
Query: 180 MKAVRRRISDARFMTLLWKTIKAGHIDV-GLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
+ + RRI+D + L+ + + + ++ G +G PQGGVISPLL+NI L+ D+
Sbjct: 277 IVELERRIADRSVLKLIRQWLHSPVVEEDGSISRPKQGTPQGGVISPLLANIYLHRLDRA 336
Query: 239 LHER----YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTK 294
HE Y +AR R+ADDFV++ +
Sbjct: 337 FHEEADSPYHFARAR-----------------------------MVRFADDFVVMARHMG 367
Query: 295 AQVEAIREECRGVLEGSLKLRLNMDKTKIPHVN--DGFIFLGHRLIRKRSRYG-EMRVVS 351
++ EE LE L L +N DKT I +N + FLG L R G + ++
Sbjct: 368 NRITGWLEE---KLETDLGLSINRDKTGIVRMNKKESLNFLGFTLRYDRDLRGRDWDYLN 424
Query: 352 TIPQEKA 358
+P +KA
Sbjct: 425 IMPSKKA 431
>ref|YP_433141.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
ref|YP_433380.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
ref|YP_435692.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
ref|YP_436300.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
ref|YP_437778.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC28716.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC28955.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC31267.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC31875.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC33353.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
Length = 462
Score = 171 bits (434), Expect = 5e-41
Identities = 107/312 (34%), Positives = 163/312 (52%), Gaps = 44/312 (14%)
Query: 12 TWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQI 71
+W +P+ ++++L +P L A + +S+KGA GVD + L+ L
Sbjct: 35 SWTNAEPNTLMEQVLE---RPN-LMHAYQRVMSNKGA--AGVDQMPVAALKGHLQQHWPT 88
Query: 72 LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLS 131
LR+ LL+G Y P P RRV IPK G R LGIP ++DR++Q+A+ + P+ E F S
Sbjct: 89 LRERLLAGDYHPQPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHS 148
Query: 132 YGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDAR 191
YGFRP RS H A+R ++ + D RWV++ DL +FD V+H +LM + RRI+D R
Sbjct: 149 YGFRPGRSAHQAVRAMQRHIND----GHRWVVDLDLEQFFDRVNHDVLMGLLARRIADRR 204
Query: 192 FMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKD 251
+TL+ + ++AG +D GL EG PQGG +SPLLSN++L E D+ L R
Sbjct: 205 MLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDRELERR--------- 255
Query: 252 RWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGS 311
+CRYADD + V+ +A + L+
Sbjct: 256 ------------------------GHRFCRYADDCNIYVRSERAG-HRVMTSITHYLKMH 290
Query: 312 LKLRLNMDKTKI 323
L+L++N +K+ +
Sbjct: 291 LRLKVNAEKSAV 302
>ref|YP_132479.1| hypothetical maturase [Photobacterium profundum SS9]
emb|CAG22679.1| hypothetical maturase [Photobacterium profundum SS9]
Length = 421
Score = 171 bits (434), Expect = 5e-41
Identities = 116/300 (38%), Positives = 160/300 (53%), Gaps = 39/300 (13%)
Query: 35 LAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKS 94
L E R +KGA PGVDG L L L EL YQP P +RV IPK
Sbjct: 17 LYEGFRKVWKNKGA--PGVDGQCVEDFAQDLESNLNQLLLELQEKRYQPQPVKRVEIPKD 74
Query: 95 NGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDC 154
+G +R LGIPA+RDRIVQ+ + M PI++ DFH SYG+RP RS H AI + +
Sbjct: 75 DGGIRLLGIPAVRDRIVQQCLSTIMTPIFDPDFHPSSYGYRPGRSCHQAISKATMFIRKY 134
Query: 155 GETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAAS 214
G R V++ DLS FD + H +++++V+RRI+D + L+ K +K+G + G+++ +
Sbjct: 135 GR---RHVVDMDLSKCFDMLDHDVIIQSVKRRITDGSILKLIDKFLKSGIMIGGVWQESE 191
Query: 215 EGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWK 274
G PQGGV SPLL+NI L+ FDQ + +R N+ I
Sbjct: 192 LGSPQGGVFSPLLANIYLDAFDQEMKQR-------------NHRI--------------- 223
Query: 275 PAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLG 334
RYADD +LI+ T+ E R+ +LE LKL +N KT I H ++G FLG
Sbjct: 224 -----VRYADD-ILILCCTQTAAEHARKVTSHILEKKLKLIVNERKTHIAHSDEGVKFLG 277
>ref|YP_431437.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
gb|ABC27012.1| group II intron-encoding maturase [Hahella chejuensis KCTC 2396]
Length = 462
Score = 171 bits (433), Expect = 6e-41
Identities = 107/312 (34%), Positives = 163/312 (52%), Gaps = 44/312 (14%)
Query: 12 TWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQI 71
+W +P+ ++++L +P L A + +S+KGA GVD + L+ L
Sbjct: 35 SWTNAEPNTLMEQVLE---RPN-LMHAYQRVMSNKGA--AGVDQMPVAALKGHLQQHWPT 88
Query: 72 LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLS 131
LR+ LL+G Y P P RRV IPK G R LGIP ++DR++Q+A+ + P+ E F S
Sbjct: 89 LRERLLAGDYHPQPVRRVSIPKPQGGERILGIPTVQDRLIQQALHQVLSPMLEPIFSDHS 148
Query: 132 YGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDAR 191
YGFRP RS H A+R ++ + D RWV++ DL +FD V+H +LM + RRI+D R
Sbjct: 149 YGFRPGRSAHQAVRAMQRHIND----GHRWVVDLDLEQFFDRVNHDVLMGLLARRIADRR 204
Query: 192 FMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKD 251
+TL+ + ++AG +D GL EG PQGG +SPLLSN++L E D+ L R
Sbjct: 205 MLTLIRRYLQAGMLDGGLVSPRREGAPQGGPLSPLLSNVLLTELDRELERR--------- 255
Query: 252 RWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGS 311
+CRYADD + V+ +A + L+
Sbjct: 256 ------------------------GHRFCRYADDCNIYVRSERAG-HRVMTSITHYLKMH 290
Query: 312 LKLRLNMDKTKI 323
L+L++N +K+ +
Sbjct: 291 LRLKVNAEKSVV 302
>ref|NP_842108.1| Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse
transcriptase); part of type II intron [Nitrosomonas
europaea ATCC 19718]
ref|NP_842195.1| Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse
transcriptase); part of type II intron [Nitrosomonas
europaea ATCC 19718]
emb|CAD86009.1| Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse
transcriptase); part of type II intron [Nitrosomonas
europaea ATCC 19718]
emb|CAD86102.1| Maturase; integron/retron-type RNA-directed DNA polymerase (Reverse
transcriptase); part of type II intron [Nitrosomonas
europaea ATCC 19718]
Length = 437
Score = 171 bits (432), Expect = 8e-41
Identities = 109/325 (33%), Positives = 172/325 (52%), Gaps = 43/325 (13%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
Q LL + + LA A R S++GA PG+DGV R+++ +G Y+
Sbjct: 16 QDLLEAVLARDNLARAWRRVKSNRGA--PGIDGVTTAEWPEHARAHWPATREQIEAGRYR 73
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P RRV IPK +G R LGIP + DR++Q+A+ + PI++ F S+GFRP R+ H
Sbjct: 74 PQPVRRVDIPKPDGGQRQLGIPTVTDRVIQQAIAQVLIPIFDPGFSASSFGFRPGRNAHQ 133
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
AIR V+ + + RW ++ DL+ +FD V+H LLM + R I+D R + L+ + ++A
Sbjct: 134 AIRQVQAHV----KAGYRWAVDLDLARFFDNVNHDLLMSLLSRSIADKRLLALIGRYLRA 189
Query: 203 GHIDVGLFRAASE-GVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQR 261
G + VG SE G PQGG +SPLL+N++L++FD L R
Sbjct: 190 G-VLVGEHPQPSEVGTPQGGPLSPLLANVLLHQFDLELERR------------------- 229
Query: 262 GRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKT 321
+ RYADD +++VK +A E + + L+ +LKL +N+ K+
Sbjct: 230 --------------GHRFARYADDVIILVKSRRA-AERVMQSLTYFLQSTLKLTVNLAKS 274
Query: 322 KIPHVNDGFIFLGHRLIRKRSRYGE 346
++ +++ FLG L+ K+ R+ E
Sbjct: 275 QVAPMSE-CSFLGFTLVGKKIRWTE 298
>ref|ZP_01139713.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
gb|EAR38209.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
Length = 522
Score = 171 bits (432), Expect = 8e-41
Identities = 128/367 (34%), Positives = 190/367 (51%), Gaps = 49/367 (13%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+S ++ KL++ A +P R L I + + L A +KGA PGVDGV+ ++
Sbjct: 103 VSLLRWKLSSKAKREPQFRFYALYDRIHRRDVLETAWLRVKVNKGA--PGVDGVSIESIE 160
Query: 63 AR---LAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
R ++ L +++ L + +Y+P P RRVYI K NGKLRPLGIP +RDRIVQ A+L+ +
Sbjct: 161 VRADGISGYLDEIQESLRTKNYKPSPVRRVYITKPNGKLRPLGIPCVRDRIVQAAVLLIL 220
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPI+E DF S+GFRP+R H A+ V L + + V + DLSSYFD++ H L
Sbjct: 221 EPIFEVDFLDCSHGFRPKRRPHGALDQVGNNL----QLGRQEVYDADLSSYFDSIPHEHL 276
Query: 180 MKAVRRRISDARFMTLLWKTIKAGHIDV-GLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
+ + RRI+D + L+ + + + ++ G +G PQGGVISPLL+NI L+ D+
Sbjct: 277 IVELERRIADRSVLKLIRQWLHSPVVEEDGSISRPKQGTPQGGVISPLLANIYLHRLDRA 336
Query: 239 LHER----YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTK 294
HE Y +AR R+ADDFV++ +
Sbjct: 337 FHEEADSPYHFARAR-----------------------------MVRFADDFVVMARHMG 367
Query: 295 AQVEAIREECRGVLEGSLKLRLNMDKTKIPHVN--DGFIFLGHRLIRKRSRYG-EMRVVS 351
++ EE LE L L +N DKT I +N + FLG L R G + ++
Sbjct: 368 NRITGWLEE---KLETDLGLSINRDKTGIVRMNKKESLNFLGFTLRYDRDLRGRDWDYLN 424
Query: 352 TIPQEKA 358
+P +KA
Sbjct: 425 IMPSKKA 431
>ref|ZP_01109209.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
gb|EAR06260.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
Length = 423
Score = 171 bits (432), Expect = 8e-41
Identities = 108/299 (36%), Positives = 159/299 (53%), Gaps = 39/299 (13%)
Query: 45 SKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIP 104
+KGA G+DG + + + L EL L EL + YQP P RRV IPK G R LGIP
Sbjct: 27 AKGA--AGIDGQSLSAFASNLDNELSQLLLELKTKRYQPQPVRRVIIPKDGGGERLLGIP 84
Query: 105 ALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIE 164
+RDR+VQ+ + + PI+E FH S+G+RP+RS H AI + + G R V++
Sbjct: 85 TVRDRVVQQCLNDLLTPIFEEQFHPSSFGYRPKRSCHDAINKATMFIRRYGR---RHVVD 141
Query: 165 GDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVIS 224
DLS FD + H L++K+++RR+ D + L+ + +++G + G ++ G PQGGVIS
Sbjct: 142 MDLSKCFDKLDHTLIIKSIKRRVRDGSVLKLITQFLESGVMVDGHWQQTETGSPQGGVIS 201
Query: 225 PLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYAD 284
PL++NI L+ FD+ + ER RYAD
Sbjct: 202 PLIANIYLDAFDKEMKER---------------------------------GHRIVRYAD 228
Query: 285 DFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
D +LI+ ++A E + + +LE LKL +N DKT I H +DG FLG + K +R
Sbjct: 229 D-ILILCSSRAAAENAKAQATHILEEKLKLSVNTDKTHITHSDDGVKFLGVEIGTKYTR 286
>ref|ZP_01139703.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
gb|EAR38199.1| similar to Retron-type reverse transcriptase [Geobacter
uraniumreducens Rf4]
Length = 522
Score = 170 bits (431), Expect = 1e-40
Identities = 128/367 (34%), Positives = 190/367 (51%), Gaps = 49/367 (13%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+S ++ KL++ A +P R L I + + L A ++KGA PGVDGV+ ++
Sbjct: 103 VSLLRWKLSSKAKREPQFRFYALYDRIHRRDVLETAWLRVKANKGA--PGVDGVSIESIE 160
Query: 63 AR---LAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAM 119
R ++ L +++ L + +Y+P P RRVYI K NGKLRPLGIP +RDRIVQ A+L+ +
Sbjct: 161 VRADGISGYLDEIQESLRTKNYKPSPVRRVYITKPNGKLRPLGIPCVRDRIVQAAVLLIL 220
Query: 120 EPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLL 179
EPI+E DF S+GFRP+R H A+ V L + + V + DLSSYFD++ H L
Sbjct: 221 EPIFEVDFLDCSHGFRPKRRPHGALDQVGNNL----QLGRQEVYDADLSSYFDSIPHEHL 276
Query: 180 MKAVRRRISDARFMTLLWKTIKAG-HIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQY 238
+ + RRI+D + L+ + + + + G +G PQGGVISPLL+NI L+ D+
Sbjct: 277 IVELERRIADRSVLKLIRQWLHSPVREEDGSISRPKQGTPQGGVISPLLANIYLHRLDRA 336
Query: 239 LHER----YLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTK 294
HE Y +AR R+ADDFV++ +
Sbjct: 337 FHEEADSPYHFARAR-----------------------------MVRFADDFVVMARHMG 367
Query: 295 AQVEAIREECRGVLEGSLKLRLNMDKTKIPHVN--DGFIFLGHRLIRKRSRYG-EMRVVS 351
++ EE LE L L +N DKT I +N + FLG L R G + ++
Sbjct: 368 NRITGWLEE---KLETDLGLSINRDKTGIVRMNKKESLNFLGFTLRYDRDLRGRDWDYLN 424
Query: 352 TIPQEKA 358
+P +KA
Sbjct: 425 IMPSKKA 431
>ref|ZP_01368733.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Desulfitobacterium hafniense DCB-2]
gb|EAT52315.1| RNA-directed DNA polymerase (Reverse transcriptase)
[Desulfitobacterium hafniense DCB-2]
Length = 469
Score = 170 bits (431), Expect = 1e-40
Identities = 107/305 (35%), Positives = 155/305 (50%), Gaps = 40/305 (13%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
+ L I E L +A R +KGA G+DG+ L L L + L G Y+
Sbjct: 52 EELFEQILSSENLNQAYRQVKKNKGAG--GIDGMQVDELLPYLRDHKDELLESLREGTYR 109
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P RRV IPK NGK R LGIP + DR++Q+A+ + PI+E F S+GFRP RS H
Sbjct: 110 PTPVRRVEIPKENGKTRKLGIPTVVDRLIQQAIAQILSPIFEKQFSESSFGFRPNRSAHD 169
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
++ + +T ++V++ DL YFDTV+ L++ + RI D R ++L+ K ++A
Sbjct: 170 VLKKSQSYIT----AGYKYVVDMDLEKYFDTVNQSKLIQILSERIKDGRVISLIHKYLRA 225
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262
G + G+F + EGVPQGG +SPLL NIMLNE D L +R
Sbjct: 226 GIMVEGMFEESPEGVPQGGPLSPLLGNIMLNECDHELEKR-------------------- 265
Query: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTK 322
+ RYADD ++ + KA + E +E L L++N +K+K
Sbjct: 266 -------------GHRFVRYADDLMIFCRSRKA-AQRTMEHIVPYIEKKLFLKVNREKSK 311
Query: 323 IPHVN 327
+ HVN
Sbjct: 312 VTHVN 316
>ref|ZP_00427901.1| RNA-directed DNA polymerase (Reverse transcriptase) [Burkholderia
vietnamiensis G4]
gb|EAM25524.1| RNA-directed DNA polymerase (Reverse transcriptase) [Burkholderia
vietnamiensis G4]
Length = 456
Score = 170 bits (431), Expect = 1e-40
Identities = 113/323 (34%), Positives = 166/323 (51%), Gaps = 45/323 (13%)
Query: 24 RLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQP 83
RL+ + + E L A + ++KGA PGVDG+ L A L + +R LL+G Y+P
Sbjct: 44 RLMEEVCERENLKRALKRVKANKGA--PGVDGMTVQALPAFLREQWPSIRATLLNGTYKP 101
Query: 84 LPARRVYIPKSNGK-LRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P RRV IPK +G +R LGIP DR VQ+A+L ++ W+ F SYGFRP RS H
Sbjct: 102 QPVRRVEIPKPDGGGVRKLGIPCALDRFVQQAVLQVLQRQWDPTFSEASYGFRPGRSAHQ 161
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
A+ + + ++ RWV++ DL +FD V+H +LM V RR+SD R + L+ + A
Sbjct: 162 AVAKAQSYI----QSGYRWVVDLDLEKFFDRVNHDILMSRVARRVSDRRVLKLIRSFLTA 217
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262
G ++ GL A EG PQGG +SPLLSN+ML++ D+ L R
Sbjct: 218 GVMEHGLVGATDEGTPQGGPLSPLLSNLMLDDLDRELGRR-------------------- 257
Query: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTK 322
+ + RYADD + V+ +A + + + L G LKL++N K+
Sbjct: 258 -------------GLRFVRYADDCNVYVRSERAG-QRVMVGLKAFLTGKLKLKVNEAKSA 303
Query: 323 I--PHVND--GFIFLGHRLIRKR 341
+ PH GF F ++R
Sbjct: 304 VARPHTRKFLGFSFTPQAWAKRR 326
>ref|NP_811530.1| reverse transcriptase [Bacteroides thetaiotaomicron VPI-5482]
gb|AAO77724.1| reverse transcriptase [Bacteroides thetaiotaomicron VPI-5482]
Length = 468
Score = 170 bits (430), Expect = 1e-40
Identities = 111/319 (34%), Positives = 168/319 (52%), Gaps = 41/319 (12%)
Query: 23 QRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQ 82
+ LL +I P L +A + + + G+ G+D ++ L + L L L SG Y+
Sbjct: 48 EHLLEIILSPSNLNKAYKAVVRNNGSG--GIDKMSCEQLLSWLKANKDELIISLQSGTYR 105
Query: 83 PLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142
P P RRV IPK NGK R LGIP + DR+VQ+A+ + I+E F SYGFRP+R H
Sbjct: 106 PNPVRRVEIPKDNGKKRLLGIPTVVDRLVQQAINQVLTLIYERQFSKTSYGFRPQRGCHD 165
Query: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202
A+R + +++ +V++ DL +FDTV H L++ + R I D R ++L+ K +++
Sbjct: 166 ALRKAQKIVSE----GYIYVVDLDLERFFDTVSHSKLIEILSRTIKDGRVISLIHKYLRS 221
Query: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262
G I+ G+F ++EG PQGG +SPLLSNIMLNE D+ L R
Sbjct: 222 GVINRGMFEMSTEGTPQGGPLSPLLSNIMLNELDKELERR-------------------- 261
Query: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTK 322
+ RYADD ++ K +A + +RE +EG L L++N +KT
Sbjct: 262 -------------GHPFVRYADDAMIFCKSKRA-AKRVRESITLFIEGKLFLKVNHEKTV 307
Query: 323 IPHVNDGFIFLGHRLIRKR 341
+ +V G FLG+ K+
Sbjct: 308 VSYVK-GVKFLGYSFYVKK 325
>ref|YP_753720.1| hypothetical protein Swol_1035 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
ref|YP_753933.1| hypothetical protein Swol_1253 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
ref|YP_754644.1| hypothetical protein Swol_1977 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gb|ABI68349.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gb|ABI68562.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gb|ABI69273.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 482
Score = 170 bits (430), Expect = 1e-40
Identities = 114/327 (34%), Positives = 163/327 (49%), Gaps = 41/327 (12%)
Query: 9 KLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVE 68
K+ +T+ + + + LL I + L A + +KGA G+DG+ L L
Sbjct: 51 KMTETDSTNTNEQTEGLLEQILSRDNLNRAYKQVKRNKGAG--GIDGMQVDELLPFLKEN 108
Query: 69 LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFH 128
L L G Y+P P RRV IPK NGK R LGIP + DR++Q+A+ + I+E F
Sbjct: 109 KNELVQSLRDGKYRPKPVRRVEIPKENGKTRKLGIPTVVDRLIQQAICQVLSLIFEKQFS 168
Query: 129 TLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRIS 188
S+GFRP+RS H A++ + +TD R+V++ DL YFDTV+ L++ + I
Sbjct: 169 NNSFGFRPKRSAHDALKRCQTNITD----GYRYVVDMDLEKYFDTVNQSKLIQILSETIK 224
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D R + L+ K ++AG + G+F + EGVPQGG +SPLL NIMLNE D L R
Sbjct: 225 DGRVIALIHKFLRAGVMVGGMFEDSPEGVPQGGPLSPLLGNIMLNECDHELERR------ 278
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
+ RYADD ++ K KA + +
Sbjct: 279 ---------------------------GHRFVRYADDMMIFCKSKKAANRTL-NHILPYI 310
Query: 309 EGSLKLRLNMDKTKIPHVNDGFIFLGH 335
E L LR+N DKT++ HVN FLG+
Sbjct: 311 EEKLFLRVNRDKTQVAHVNK-VKFLGY 336
>ref|ZP_01464265.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Stigmatella aurantiaca DW4/3-1]
gb|EAU64974.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Stigmatella aurantiaca DW4/3-1]
Length = 421
Score = 169 bits (429), Expect = 2e-40
Identities = 103/277 (37%), Positives = 145/277 (52%), Gaps = 39/277 (14%)
Query: 33 EWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIP 92
EWL A T A G+D +A L V L+ L + + SG Y+ P RR YIP
Sbjct: 13 EWLRYAYEQTRKDGAA---GIDRQTAKDYEANLEVNLKSLLERIKSGRYKAPPVRRTYIP 69
Query: 93 KSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLT 152
K++G RPLGIP D++ QRA+++ +EPI+E DF S+GFRP RS H A+R ++ +
Sbjct: 70 KADGSQRPLGIPTFEDKVAQRAIVLLLEPIYEQDFRPFSFGFRPGRSAHQALRELRSSIL 129
Query: 153 DCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRA 212
E GRWV++ DL YFDT+ H L + + RR++D ++ K +KAG ++ G
Sbjct: 130 ---ERNGRWVLDVDLRRYFDTIEHGKLREVLARRVADGVVRRMIDKWLKAGVLEEGPLLR 186
Query: 213 ASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQ 272
+G PQGGVISPLL+N+ YLH Y+ D WY + R
Sbjct: 187 LEQGTPQGGVISPLLANV-------YLH--YV-----LDEWYEREVVPR----------- 221
Query: 273 WKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLE 309
K + RYADD V++ + +CR VLE
Sbjct: 222 MKGKCSLIRYADDLVMVFEDFL--------DCRRVLE 250
>gb|ABK00737.1| reverse transcriptase [Bacillus cereus]
Length = 633
Score = 169 bits (428), Expect = 2e-40
Identities = 121/363 (33%), Positives = 198/363 (54%), Gaps = 37/363 (10%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ-ARLAVELQILRDELLSGHYQP 83
LL + + A S+KG+ TPGVDG KT+ RL+ E I EL+ G
Sbjct: 41 LLEIAMSKPNIVTAIHSLKSNKGSMTPGVDG--KTIQDYLRLSEEKLI---ELIRGRLTN 95
Query: 84 LPA---RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSV 140
A +RV+IPK+NG RPLGIP + DRI+Q+ M +EP+ E+ F S+GFRPER+
Sbjct: 96 FKAHLIKRVFIPKANGGQRPLGIPTIEDRIIQQMMKQVLEPVLEAQFFKYSFGFRPERTT 155
Query: 141 HHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAV-RRRISDARFMTLLWKT 199
+HA+ VK+ + + G W++EGD+ +FD V+HR+L+K + I D R + L+ +
Sbjct: 156 YHALERVKVLVHNTGY---HWIVEGDIRQFFDKVNHRILIKKLWSMGIKDRRILCLITEF 212
Query: 200 IKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSI 259
+KAG I + R G PQGG++SPLL+N+ L+ FD+++ +++ R + ++ +
Sbjct: 213 LKAG-IFKNIIR-NDNGTPQGGILSPLLANVYLHSFDKWVAKQFEEFTTRHEYSKHDHKL 270
Query: 260 QRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMD 319
+ +S+ ++ + RYADD+VL V K+ + + L+ LKL L+ +
Sbjct: 271 RGLKSSNLKPGY-------LIRYADDWVL-VTNNKSHAYRWKTVIKNFLQKELKLELSEE 322
Query: 320 KTKIPHVNDGFI-FLGHR-------LIRKRSRYGEMRVVSTIP------QEKARNFAASL 365
KT+I ++ I FLG + + K+ + + R +S I + K + A+L
Sbjct: 323 KTRITNIRHKPIEFLGFKYKVVLKGVKGKKKKDKKTRYISQITPSDKKIKRKVKELRATL 382
Query: 366 TAL 368
T+L
Sbjct: 383 TSL 385
>ref|NP_982096.1| reverse transcriptase [Bacillus cereus ATCC 10987]
gb|AAS44939.1| reverse transcriptase [Bacillus cereus ATCC 10987]
Length = 632
Score = 169 bits (428), Expect = 2e-40
Identities = 121/363 (33%), Positives = 198/363 (54%), Gaps = 37/363 (10%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ-ARLAVELQILRDELLSGHYQP 83
LL + + A S+KG+ TPGVDG KT+ RL+ E I EL+ G
Sbjct: 40 LLEIAMSKPNIVTAIHSLKSNKGSMTPGVDG--KTIQDYLRLSEEKLI---ELIRGRLTN 94
Query: 84 LPA---RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSV 140
A +RV+IPK+NG RPLGIP + DRI+Q+ M +EP+ E+ F S+GFRPER+
Sbjct: 95 FKAHLIKRVFIPKANGGQRPLGIPTIEDRIIQQMMKQVLEPVLEAQFFKYSFGFRPERTT 154
Query: 141 HHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAV-RRRISDARFMTLLWKT 199
+HA+ VK+ + + G W++EGD+ +FD V+HR+L+K + I D R + L+ +
Sbjct: 155 YHALERVKVLVHNTGY---HWIVEGDIRQFFDKVNHRILIKKLWSMGIKDRRILCLITEF 211
Query: 200 IKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSI 259
+KAG I + R G PQGG++SPLL+N+ L+ FD+++ +++ R + ++ +
Sbjct: 212 LKAG-IFKNIIR-NDNGTPQGGILSPLLANVYLHSFDKWVAKQFEEFTTRHEYSKHDHKL 269
Query: 260 QRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMD 319
+ +S+ ++ + RYADD+VL V K+ + + L+ LKL L+ +
Sbjct: 270 RGLKSSNLKPGY-------LIRYADDWVL-VTNNKSHAYRWKTVIKNFLQKELKLELSEE 321
Query: 320 KTKIPHVNDGFI-FLGHR-------LIRKRSRYGEMRVVSTIP------QEKARNFAASL 365
KT+I ++ I FLG + + K+ + + R +S I + K + A+L
Sbjct: 322 KTRITNIRHKPIEFLGFKYKVVLKGVKGKKKKDKKTRYISQITPSDKKIKRKVKELRATL 381
Query: 366 TAL 368
T+L
Sbjct: 382 TSL 384
>ref|YP_520807.1| hypothetical protein DSY4574 [Desulfitobacterium hafniense Y51]
dbj|BAE86363.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 439
Score = 169 bits (428), Expect = 2e-40
Identities = 110/319 (34%), Positives = 161/319 (50%), Gaps = 40/319 (12%)
Query: 9 KLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVE 68
K+ +T+ + + + LL I + L A + +KGA G+DG+ L L
Sbjct: 6 KITETDSTNTNKQKEGLLEQILSADNLNRAYKQVKRNKGAG--GIDGMQVDELLPFLENH 63
Query: 69 LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFH 128
L L G Y+P P RRV I K NGK+R LGIP + DR++Q+A+ + PI+E F
Sbjct: 64 KDELVKSLWDGKYRPKPVRRVEILKENGKMRKLGIPTVVDRLIQQAITQVLSPIFEEQFS 123
Query: 129 TLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRIS 188
S+GFRP+RS H A+R + + R+V++ DL YFDTV+ L++ + I
Sbjct: 124 DSSFGFRPKRSAHDALRRCQSHING----GYRYVVDMDLEKYFDTVNQSKLIQILSETIK 179
Query: 189 DARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKA 248
D R ++L+ K +++G + GLF + EGVPQGG +SPLL NIMLNE D L R
Sbjct: 180 DGRVISLIHKFLQSGVMVDGLFEESPEGVPQGGPLSPLLGNIMLNECDHELERR------ 233
Query: 249 RKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVL 308
+ RYADD ++ K KA + + +
Sbjct: 234 ---------------------------GHRFVRYADDMMIFCKSKKAAKRTL-DHILPYI 265
Query: 309 EGSLKLRLNMDKTKIPHVN 327
EG L L++N +KTK+ HVN
Sbjct: 266 EGKLFLKVNREKTKVAHVN 284
>ref|YP_074573.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_074953.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39729.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40109.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_074709.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39865.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_075809.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40965.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 328
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_074723.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39879.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_074813.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39969.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_076561.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD41717.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 169 bits (428), Expect = 2e-40
Identities = 108/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_075623.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40779.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 168 bits (426), Expect = 4e-40
Identities = 107/319 (33%), Positives = 164/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ E + +R+ELL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRAEWERIREELLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>ref|YP_357678.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Pelobacter carbinolicus DSM 2380]
gb|ABA89508.1| prophage LambdaSa1, reverse transcriptase/maturase family protein
[Pelobacter carbinolicus DSM 2380]
Length = 446
Score = 168 bits (425), Expect = 5e-40
Identities = 123/353 (34%), Positives = 179/353 (50%), Gaps = 48/353 (13%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
I ++QRKL A +P+ R L + + + L+ A + ++KG+ G+DGV ++
Sbjct: 8 IRKLQRKLYRKAKQEPACRFHALYDKVYRADILSHAYALVRANKGS--AGIDGVTFAAIE 65
Query: 63 ARLAVELQI--LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
R V I L + L S Y+P P +RV IPK++G RPLGIP +RDR+ Q A+ + +E
Sbjct: 66 EREGVSALIAELEEALRSKTYKPDPVKRVMIPKADGSQRPLGIPTIRDRVAQMAVKLVVE 125
Query: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
PI+E+DF SYGFRP++S H A+ V + + G T VI+ D+S YFDT+ H LM
Sbjct: 126 PIFEADFCDTSYGFRPKKSAHDAVDDVAYAM-NIGYTE---VIDADISKYFDTIPHTNLM 181
Query: 181 KAVRRRISDARFMTLLWKTIKAGHIDVGL---------FRAASEGVPQGGVISPLLSNIM 231
V RI D + L+ +K+ ++VG + G PQGGVISPLL+N+
Sbjct: 182 AVVAERICDGAILHLIQMWLKSSVMEVGKDGKKRNVGGGKGNRRGTPQGGVISPLLANLY 241
Query: 232 LNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVK 291
L+ D+ W R N Q + RYADD VL+ +
Sbjct: 242 LHILDR----------------IWE-----------RRNLQQRLNARIVRYADDTVLLCR 274
Query: 292 GTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPH-VNDGFIFLGHRLIRKRSR 343
K+ + R +LE L L LN KTK+ + GF FLG + +SR
Sbjct: 275 RNKS--DEAMAVLRQILE-RLGLTLNEAKTKVVNGYKGGFDFLGFSIRMGKSR 324
>gb|ABD24341.1| putative reverse transcriptase [Bacillus thuringiensis]
Length = 443
Score = 168 bits (425), Expect = 5e-40
Identities = 124/362 (34%), Positives = 193/362 (53%), Gaps = 43/362 (11%)
Query: 3 ISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQ 62
+ E+++++ A ++P+ R + IT+ L EA + + GA PG+DG + ++
Sbjct: 16 LQELRQRIYRKAKSEPTHRFWGIFTHITKITTLHEAYQQARKNNGA--PGIDGKSFADIE 73
Query: 63 ARLAVE-LQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEP 121
+ L +++EL +G YQP R+V IPK+NGK+R L IP +RDR+VQ A+ + +E
Sbjct: 74 LEGVIPFLTGIQEELQAGIYQPQANRKVEIPKTNGKMRTLQIPCIRDRVVQGALKLILEA 133
Query: 122 IWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMK 181
I+E+DF SYGFRP+RS H A+ V+ + R +I+ DLS YFDT+ H +L++
Sbjct: 134 IFEADFCPNSYGFRPKRSPHQALAEVRRSIL----RRMTIIIDVDLSRYFDTIRHNILLE 189
Query: 182 AVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHE 241
+ +R+ D + M L+ + IKA GVPQGG SPL +NI LNE D
Sbjct: 190 KIAKRVQDPQVMHLVKQVIKA---------TGKIGVPQGGPFSPLAANIYLNEVD----- 235
Query: 242 RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIR 301
W + ++I+R + E AV Y R+ADD V+ V G ++
Sbjct: 236 -----------WTF-DTIRRKTADGNYE------AVNYHRFADDIVIAVSGHSSKSGWAE 277
Query: 302 EECRGVLE--GSLKLRLNMDKTKIPHV--NDGFIFLGHRLIRKRSRYGEMRVVSTIPQEK 357
R + E L + LN++KT++ +V + F FLG L R +R V IP++K
Sbjct: 278 LALRRLWEQLKPLGVELNLEKTQMVNVLKGESFGFLGFDLRRIPNRNKNGFFVFMIPKKK 337
Query: 358 AR 359
AR
Sbjct: 338 AR 339
>ref|ZP_01175840.1| COG3344: Retron-type reverse transcriptase [Yersinia pestis biovar
Orientalis str. IP275]
Length = 101
Score = 168 bits (425), Expect = 5e-40
Identities = 83/89 (93%), Positives = 84/89 (94%)
Query: 56 VNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAM 115
+NKT LQARLA ELQILRDELLSG YQPLPARRVYIPKSNGK RPLGIP LRDRIVQRAM
Sbjct: 1 MNKTTLQARLAAELQILRDELLSGCYQPLPARRVYIPKSNGKQRPLGIPTLRDRIVQRAM 60
Query: 116 LMAMEPIWESDFHTLSYGFRPERSVHHAI 144
LMAMEPIWESDFHTLSYGFRPERSVHHAI
Sbjct: 61 LMAMEPIWESDFHTLSYGFRPERSVHHAI 89
>ref|ZP_01610016.1| RNA-directed DNA polymerase [Sphingomonas wittichii RW1]
gb|EAW01906.1| RNA-directed DNA polymerase [Sphingomonas wittichii RW1]
Length = 572
Score = 167 bits (424), Expect = 7e-40
Identities = 114/323 (35%), Positives = 153/323 (47%), Gaps = 46/323 (14%)
Query: 50 TPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDR 109
TPGVDG L L + G Y+P P RRVYIPK NGK+RPLGIP DR
Sbjct: 2 TPGVDGQT---FDGMTLARLDRLTQGVAEGRYRPRPVRRVYIPKGNGKMRPLGIPTADDR 58
Query: 110 IVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSS 169
IVQ A M + I+E F S+GFR RS H A+ ++ T +W+IE D+
Sbjct: 59 IVQEAARMILAAIYEPVFSKHSHGFRAGRSCHTALEEIRRTWTG-----AKWLIEVDVRG 113
Query: 170 YFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSN 229
+FD + H +L+ + RRI D F+ L+ +KAG +D F G PQGGVISPLL+N
Sbjct: 114 FFDNIDHDILLSLLARRIDDPVFIDLIGTMLKAGCMDEWKFERTYSGTPQGGVISPLLAN 173
Query: 230 IMLNEFDQYLHE-RYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVA---------- 278
I L+E D ++ E R K K R +Q + A+R+ AV
Sbjct: 174 IYLHELDLFMEEMRARFDKGVKRRANPVYVVQSQKIAALRKEIDAIRAVGADEAEVRTRL 233
Query: 279 ---------------------------YCRYADDFVLIVKGTKAQVEAIREECRGVLEGS 311
YCRYADDF++ V G+KA I + + L
Sbjct: 234 ARIEAINRDRRKISSVDQMDPNFRRLRYCRYADDFLVGVIGSKADAVRIMADIQHFLADR 293
Query: 312 LKLRLNMDKTKIPHVNDGFIFLG 334
L L ++ +KT + + G FLG
Sbjct: 294 LNLTVSPEKTGVRDASRGSPFLG 316
>ref|ZP_01388905.1| RNA-directed DNA polymerase [Geobacter sp. FRC-32]
gb|EAT61797.1| RNA-directed DNA polymerase [Geobacter sp. FRC-32]
Length = 446
Score = 167 bits (424), Expect = 7e-40
Identities = 116/336 (34%), Positives = 165/336 (49%), Gaps = 44/336 (13%)
Query: 17 DPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDEL 76
DP LL I PE + A + ++KGA PGVDGVN +R L
Sbjct: 20 DPQTPENHLLERILSPENMELAWKRVRANKGA--PGVDGVNIDDFPDITRPLWGDIRASL 77
Query: 77 LSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRP 136
+G Y P P RV IPK G RPLGIP + DR++Q+++ + PI++ F S+GFRP
Sbjct: 78 ATGSYLPKPVLRVEIPKPTGGNRPLGIPTVLDRLIQQSIAQVLTPIFDPGFSESSFGFRP 137
Query: 137 ERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLL 196
RS H A+R QL + R ++ DL+ +FDTV+H LLM V R++ D R + L+
Sbjct: 138 GRSAHDAVR----QLREYLRQGYRIAVDIDLAKFFDTVNHDLLMTFVGRKVRDKRVLALI 193
Query: 197 WKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWN 256
+ ++AG G GVPQGG +SPLL+NI+L+ D+ L +R
Sbjct: 194 GRYLRAGVEVDGRLEKTRMGVPQGGPLSPLLANILLDHLDKELEKR-------------- 239
Query: 257 NSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRL 316
+ RYADDFV++VK +A E + R L LKL +
Sbjct: 240 -------------------GHKFVRYADDFVILVKSERAG-ERVMGSVRKHLTTKLKLTV 279
Query: 317 NMDKTKIPHVND----GFIFLGHRLIRKRSRYGEMR 348
N DK+K+ + GF+F G +++ Y E R
Sbjct: 280 NEDKSKVAKSDQISFLGFVFKGTKILWSDKAYKEFR 315
>gb|AAT72329.1| reverse transcriptase/maturase [Geobacillus stearothermophilus]
Length = 420
Score = 167 bits (424), Expect = 7e-40
Identities = 101/299 (33%), Positives = 163/299 (54%), Gaps = 40/299 (13%)
Query: 25 LLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPL 84
LL I + L A + +++GA PG+DGV+ L+ + +R +LL+G Y+P
Sbjct: 3 LLERILARDNLITALKRVEANQGA--PGIDGVSTDQLRDYIRAHWSTIRAQLLAGTYRPA 60
Query: 85 PARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAI 144
P RRV IPK G R LGIP + DR++Q+A+L + PI++ DF S+GFRP R+ H A+
Sbjct: 61 PVRRVGIPKPGGGTRQLGIPTVVDRLIQQAILQELTPIFDPDFSPSSFGFRPGRNAHDAV 120
Query: 145 RTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGH 204
R + + + R+V++ DL +FD V+H +LM V R++ D R + L+ ++AG
Sbjct: 121 RQAQGYI----QEGYRYVVDMDLEKFFDRVNHDILMSRVARKVKDKRVLKLIRAYLQAGV 176
Query: 205 IDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRS 264
+ G+ EG PQGG +SPLL+NI+L++ D+ L +R L
Sbjct: 177 MIEGVKVQTEEGTPQGGPLSPLLANILLDDLDKELEKRGLK------------------- 217
Query: 265 TAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKI 323
+CRYADD + VK +A + +++ + LE +LKL++N +K+ +
Sbjct: 218 --------------FCRYADDCNIYVKSLRAG-QRVKQSIQRFLEKTLKLKVNEEKSAV 261
>ref|ZP_01112144.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
gb|EAR03509.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
Length = 423
Score = 167 bits (423), Expect = 9e-40
Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 39/299 (13%)
Query: 45 SKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIP 104
+KGA G+DG + + + L EL L EL + YQP P RRV IPK G R LGIP
Sbjct: 27 AKGA--AGIDGQSLSAFASNLDNELSQLLLELKTKRYQPQPVRRVIIPKDGGGERLLGIP 84
Query: 105 ALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIE 164
+RDR+VQ+ + + PI+E FH S+G+RP+RS H AI + + R + V++
Sbjct: 85 TVRDRVVQQCLNDLLTPIFEEQFHPSSFGYRPKRSCHDAINKATMFIR---RYRRQHVVD 141
Query: 165 GDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVIS 224
DLS FD + H L++K+++RR+ D ++L+ + +++G + G ++ G PQGGVIS
Sbjct: 142 MDLSKCFDKLDHTLIIKSIKRRVRDGSVLSLIAQFLQSGVMVDGHWQQTETGSPQGGVIS 201
Query: 225 PLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRYAD 284
PL++NI L+ FD+ + QRG RYAD
Sbjct: 202 PLIANIYLDAFDEEMK-------------------QRGHRIV--------------RYAD 228
Query: 285 DFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRSR 343
D +LI+ ++A E + + +LE LKL +N +KT I H +DG FLG + K +R
Sbjct: 229 D-ILILCSSRAAAENAKVQATHILEEKLKLSVNTEKTHITHSDDGVKFLGVEIGTKYTR 286
>ref|ZP_01110659.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
gb|EAR04950.1| hypothetical maturase [Alteromonas macleodii 'Deep ecotype']
Length = 423
Score = 167 bits (423), Expect = 9e-40
Identities = 107/301 (35%), Positives = 161/301 (53%), Gaps = 39/301 (12%)
Query: 43 LSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLG 102
L +KGA G+DG + + + L EL L EL + YQ P RRV IPK G R LG
Sbjct: 25 LKAKGA--AGIDGQSLSAFASNLDNELTQLLLELKTKRYQAQPVRRVVIPKDGGGERLLG 82
Query: 103 IPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWV 162
IP +RDR+VQ+ + + PI+E FH S+G+RP+RS H AI + + R + V
Sbjct: 83 IPTVRDRVVQQCLNDLLTPIFEEQFHPSSFGYRPKRSCHDAINKATMFIR---RYRRQHV 139
Query: 163 IEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGV 222
++ DLS FD + H L++K+++RR+ D ++L+ + +++G + G ++ G PQGGV
Sbjct: 140 VDMDLSKCFDKLDHTLIIKSIKRRVRDGSVLSLITQFLQSGVMVDGHWQQTETGSPQGGV 199
Query: 223 ISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTAVRENWQWKPAVAYCRY 282
ISPL++NI L+ FD+ + QRG RY
Sbjct: 200 ISPLIANIYLDAFDEEMK-------------------QRGHRIV--------------RY 226
Query: 283 ADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHVNDGFIFLGHRLIRKRS 342
ADD +LI+ ++ E + + +LEG LKL +N +KT I H +DG FLG + K +
Sbjct: 227 ADD-ILILCCSRTAAENAKAQATHILEGKLKLSVNTEKTHITHSDDGVKFLGVEIGTKHT 285
Query: 343 R 343
R
Sbjct: 286 R 286
>gb|EAJ92722.1| unknown [environmental sequence]
Length = 223
Score = 167 bits (422), Expect = 1e-39
Identities = 92/230 (40%), Positives = 135/230 (58%), Gaps = 7/230 (3%)
Query: 1 MIISEMQRKLATWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTM 60
MI+S Q+++A A P L L + EWL EA R+T G+DG
Sbjct: 1 MIVSTKQQQIAKLAKEKPKLVFTSLNHQL-DIEWLYEAYRLTRKDGAV---GIDGETARD 56
Query: 61 LQARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAME 120
+ L LQ L + + SG Y+ RRV+IPK +GKLRPLGIP D++VQRA++M +E
Sbjct: 57 YEQHLDANLQSLLERVKSGRYRAPAIRRVFIPKGDGKLRPLGIPTFEDKLVQRAVVMLLE 116
Query: 121 PIWESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLM 180
PI+E F+ S+GFRP S H A+++++ + D G G+WV++ D+ YFDT+ H L
Sbjct: 117 PIYEQTFYDCSFGFRPGYSAHQALQSLRNHIMDDG---GKWVLDVDIQQYFDTIEHTQLR 173
Query: 181 KAVRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNI 230
+ +R++D ++ K +KAG +D + + G PQGGVISPLL+NI
Sbjct: 174 NFLDQRVTDGVIRKMIDKWLKAGVMDGSKLKKSVIGTPQGGVISPLLANI 223
>ref|YP_986460.1| RNA-directed DNA polymerase [Acidovorax sp. JS42]
gb|ABM42384.1| RNA-directed DNA polymerase [Acidovorax sp. JS42]
Length = 473
Score = 167 bits (422), Expect = 1e-39
Identities = 111/312 (35%), Positives = 153/312 (49%), Gaps = 44/312 (14%)
Query: 12 TWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQI 71
TW +P + R+L P L A + +S+KGA PG DG+ L + I
Sbjct: 46 TWTNAEPDTLMARVLA----PANLRRAYQRVVSNKGA--PGADGMTVDDLADYVNQYWPI 99
Query: 72 LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLS 131
L+ LL+G Y P R V IPK G R LGIP + DR++Q+A+L + PI++ F S
Sbjct: 100 LQRRLLAGEYHPQGVRAVDIPKPKGGTRQLGIPCVVDRLIQQALLQQLTPIFDPLFSDYS 159
Query: 132 YGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDAR 191
YGFRP RS H AI T + + RW +E DL +FD V+H LLM V R+I D R
Sbjct: 160 YGFRPGRSAHQAIETARAHVA----AGHRWCVELDLEKFFDRVNHDLLMAYVARQIVDKR 215
Query: 192 FMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKD 251
+ L+ + ++AG + G+ EG PQGG +SPLLSNI+LNE D+ L R
Sbjct: 216 VLRLIRRYLQAGEMSGGIASRRQEGTPQGGPLSPLLSNILLNELDRELERR--------- 266
Query: 252 RWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGS 311
+ RYADD + V+ +A E + L
Sbjct: 267 ------------------------GHRFVRYADDANIYVRSPRAG-ERVMASVERFLNQR 301
Query: 312 LKLRLNMDKTKI 323
LKL LN DK+++
Sbjct: 302 LKLTLNRDKSRV 313
>gb|AAK11468.1|AF323437_1 putative maturase/reverse transcriptase [Pseudomonas alcaligenes]
Length = 407
Score = 166 bits (421), Expect = 2e-39
Identities = 109/312 (34%), Positives = 157/312 (50%), Gaps = 44/312 (14%)
Query: 12 TWAATDPSLRIQRLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQI 71
TW +P+ ++R+L P L A R ++++GA PG DG++ L L
Sbjct: 38 TWTKAEPNTLMERVL----SPANLRRAYRRVVNNRGA--PGADGLSVDELAGYLKQYWPS 91
Query: 72 LRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLS 131
LR+ L +G YQP R V IPK +G +R LGIP++ DR++Q+A+L + P++E F S
Sbjct: 92 LRERLQTGEYQPYGVRAVNIPKPDGGVRTLGIPSVLDRLIQQALLQQLTPLFEPLFSDFS 151
Query: 132 YGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDAR 191
YGFRP RS H AI + + RW +E DL +FD V H LLM + R++ D R
Sbjct: 152 YGFRPGRSAHQAIEMARAHVA----AGYRWSVELDLEKFFDRVDHDLLMDLLARQVEDPR 207
Query: 192 FMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKD 251
L+ + ++AG + GL EG PQGG +SPLLSNI+LNE D+ L R
Sbjct: 208 VRRLVRRYLEAGVMAGGLVSLRREGTPQGGPLSPLLSNILLNELDRELSRR--------- 258
Query: 252 RWYWNNSIQRGRSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGS 311
+ RYADD + V+ +A E + LE
Sbjct: 259 ------------------------GHRFVRYADDANVYVRSRQAG-ERVLASLERFLEQR 293
Query: 312 LKLRLNMDKTKI 323
L+LRLN K+++
Sbjct: 294 LRLRLNRAKSQV 305
>ref|YP_073849.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_074676.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_075175.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_075379.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_075500.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_075843.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_075886.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_076388.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_076751.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_076780.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_076936.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_076947.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
ref|YP_077138.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39005.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD39832.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40331.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40535.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40656.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD40999.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD41042.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD41544.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD41907.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD41936.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD42092.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD42103.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
dbj|BAD42294.1| group II intron-encoding maturase [Symbiobacterium thermophilum IAM
14863]
Length = 429
Score = 166 bits (421), Expect = 2e-39
Identities = 107/319 (33%), Positives = 163/319 (51%), Gaps = 45/319 (14%)
Query: 27 RLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQPLPA 86
+++ + LA R+ + PGVDGV L+ ++ VE +R+ LL G Y+P P
Sbjct: 3 QVVARENMLAALKRV---ERNGGAPGVDGVPTERLRDQIRVEWSRIREGLLQGTYRPQPV 59
Query: 87 RRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHHAIRT 146
RRV IPK G R LGIP + DR++Q+A+L + PI++ F SYGFRP R H A+R
Sbjct: 60 RRVEIPKPGGGKRMLGIPTVMDRLIQQALLQVLTPIFDPTFSESSYGFRPGRRGHDAVRK 119
Query: 147 VKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKAGHID 206
+ + E WV++ DL +FD V+H +LM V RR++D R + L+ + ++AG +
Sbjct: 120 ARQYV----EEGYDWVVDMDLEKFFDRVNHDVLMARVARRVTDKRVLRLIRRYLQAGVML 175
Query: 207 VGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRGRSTA 266
G+ A EG PQGG +SPLL+NI+L++ D+ L R
Sbjct: 176 NGVVVATEEGTPQGGPLSPLLANILLDDLDKELERR------------------------ 211
Query: 267 VRENWQWKPAVAYCRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV 326
+ RYADD + V+ +A E + R L+ L+L++N +K+ +
Sbjct: 212 ---------GHHFVRYADDCNIYVRSKRAG-ERVYRSVRHFLQERLRLKVNEEKSAVDRP 261
Query: 327 ND----GFIFLGHRLIRKR 341
GF F HR +R R
Sbjct: 262 WKRQFLGFSFYKHRGVRIR 280
>gb|AAB95256.1| RT-like protein [Venturia inaequalis]
Length = 760
Score = 166 bits (420), Expect = 2e-39
Identities = 113/374 (30%), Positives = 196/374 (52%), Gaps = 48/374 (12%)
Query: 9 KLATWAATDPSLRIQR-LLRLITQPEWLAEAARITLSSKGAHTPGV-----DGVNKTMLQ 62
KL+ + ++P+ I R L L T + L A S G T GV DG+++ L
Sbjct: 246 KLSIRSKSNPNSIIDRELYTLATSVDTLIYAYENIKSKPGNMTQGVLPETLDGISREKLT 305
Query: 63 ARLAVELQILRDELLSGHYQPLPARRVYIPKSNGKLRPLGIPALRDRIVQRAMLMAMEPI 122
L D L S + P+RR+ IPK++G RPL I + D+IVQ AM + +E I
Sbjct: 306 K--------LSDSLRSEKFSFSPSRRIQIPKASGGSRPLSIASPMDKIVQEAMRLVLEAI 357
Query: 123 WESDFHTLSYGFRPERSVHHAIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKA 182
++ F S+GFRP +S H A+++V + +WVIEGDL+ +FD++ H LMK
Sbjct: 358 YDPVFLDCSHGFRPNKSCHTALKSVSQEFQPV-----QWVIEGDLAKFFDSISHSKLMKL 412
Query: 183 VRRRISDARFMTLLWKTIKAGHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLH-- 240
V +I+D RF L+WK + AG+ + ++++ G PQG ++SP+L+NI L++ D +++
Sbjct: 413 VESKITDRRFTNLIWKALTAGYFEFKIYKSNIVGTPQGSIVSPILANIFLHQLDLFVNCL 472
Query: 241 -----ERYLSGKARKDRWYWNNSI----------------QRGRSTAVRENWQWKPAVAY 279
+ + +++ R+Y +++ +R ++ ++ + + Y
Sbjct: 473 KRDFDKGTRAPRSKSSRYYEYHTLKARKAGDTLQLQKLIAERSQNPSIDFGSESFKRLVY 532
Query: 280 CRYADDFVLIVKGTKAQVEAIREECRGVLEGSLKLRLNMDKTKIPHV-NDGFIFLGHRLI 338
RYADD+++ ++GT+ Q + I + R S+ L L+ KTK+ + + +FLG +
Sbjct: 533 VRYADDWIIGIRGTREQAKYILTKVREFCT-SIDLELSEHKTKLTSLHSQPILFLGTSIS 591
Query: 339 R----KRSRYGEMR 348
R + SR G +R
Sbjct: 592 RSSHVRYSRIGSVR 605
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