Score E
Sequences producing significant alignments: (bits) Value
ref|ZP_00726102.1| COG0582: Integrase [Escherichia coli F11] 821 0.0
ref|YP_672358.1| prophage P4 integrase [Escherichia coli 53... 820 0.0
ref|YP_543812.1| prophage P4 integrase [Escherichia coli UT... 818 0.0
ref|NP_418691.1| KpLE2 phage-like element; predicted integr... 800 0.0
emb|CAD42017.1| bacteriophage P4 integrase [Escherichia coli] 777 0.0
ref|ZP_01588664.1| phage integrase [Enterobacter sp. 638] >... 749 0.0
ref|ZP_00729795.1| COG0582: Integrase [Escherichia coli E22] 681 0.0
ref|ZP_00699371.1| COG0582: Integrase [Shigella boydii BS512] 678 0.0
ref|ZP_00714759.1| COG0582: Integrase [Escherichia coli B7A] 659 0.0
ref|ZP_00821097.1| COG0582: Integrase [Yersinia bercovieri ... 657 0.0
ref|NP_668085.1| prophage P4 integrase [Yersinia pestis KIM... 657 0.0
ref|NP_406899.1| integrase [Yersinia pestis CO92] >gi|89102... 657 0.0
ref|ZP_00797005.1| COG0582: Integrase [Yersinia pestis Angola] 655 0.0
ref|ZP_00829619.1| COG0582: Integrase [Yersinia frederiksen... 654 0.0
ref|ZP_00834004.1| COG0582: Integrase [Yersinia intermedia ... 654 0.0
ref|YP_410419.1| prophage P4 integrase [Shigella boydii Sb2... 640 0.0
ref|ZP_01498036.1| hypothetical protein YpseI_02003210 [Yer... 632 e-180
ref|YP_691515.1| putative P4-type integrase [Shigella flexn... 615 e-174
ref|NP_839619.1| putative P4-type integrase [Shigella flexn... 613 e-174
ref|YP_050970.1| integrase [Erwinia carotovora subsp. atros... 608 e-172
gb|EAI62000.1| unknown [environmental sequence] 599 e-169
gb|AAK16198.1| Int [Escherichia coli] 599 e-169
ref|ZP_00725099.1| COG0582: Integrase [Escherichia coli F11... 596 e-169
gb|AAL51003.1|AF453829_1 CP4-like integrase [Escherichia coli] 596 e-169
ref|ZP_00700958.1| COG0582: Integrase [Escherichia coli E24... 596 e-169
ref|ZP_00708295.1| COG0582: Integrase [Escherichia coli B17... 595 e-168
gb|AAT48697.1| CP4-like integrase [Escherichia coli] 595 e-168
ref|NP_708738.1| putative P4-type integrase [Shigella flexn... 594 e-168
emb|CAJ87566.1| integrase [Escherichia coli] 593 e-168
gb|EAY46246.1| phage integrase family protein [Escherichia ... 593 e-168
ref|NP_755431.1| Prophage P4 integrase [Escherichia coli CF... 593 e-168
ref|YP_859807.1| Int (Putative P4-type integrase) [Escheric... 592 e-167
ref|NP_757064.1| Prophage P4 integrase [Escherichia coli CF... 592 e-167
ref|NP_289539.1| putative pathogenicity island integrase [E... 592 e-167
ref|YP_854214.1| putative P4-like integrase [Escherichia co... 591 e-167
gb|EAY49697.1| phage integrase family protein [Escherichia ... 590 e-167
emb|CAE55749.1| Int (Putative P4-type integrase) [Escherich... 590 e-167
ref|ZP_01495624.1| hypothetical protein YpseI_02000740 [Yer... 576 e-162
ref|NP_757219.1| Prophage P4 integrase [Escherichia coli CF... 565 e-159
emb|CAC81896.1| integrase [Escherichia coli] 555 e-156
ref|ZP_01587481.1| phage integrase [Enterobacter sp. 638] >... 555 e-156
gb|AAK00456.1| Int [Shigella flexneri 2a] 554 e-156
ref|ZP_00834521.1| COG0582: Integrase [Yersinia intermedia ... 553 e-156
gb|AAK16076.1|AF288080_3 IntB [Photorhabdus luminescens] 539 e-151
gb|AAB95339.1| putative integrase [Enterobacter aerogenes] 538 e-151
ref|NP_931643.1| hypothetical protein plu4477 [Photorhabdus... 526 e-148
ref|ZP_00824745.1| COG0582: Integrase [Yersinia mollaretii ... 517 e-145
ref|YP_049780.1| phage integrase [Erwinia carotovora subsp.... 508 e-142
ref|YP_153333.1| integrase [Salmonella enterica subsp. ente... 499 e-139
ref|NP_458899.1| integrase [Salmonella enterica subsp. ente... 498 e-139
ref|YP_410429.1| putative P4-type integrase [Shigella boydi... 494 e-138
gb|AAF06962.1|AF157599_1 P4 integrase-like protein [Escheri... 491 e-137
ref|YP_050980.1| integrase [Erwinia carotovora subsp. atros... 491 e-137
ref|NP_042035.1| integrase [Bacteriophage P4] >gi|1353214|s... 490 e-137
emb|CAA29379.1| integrase (P4 int) (AA 1-440) [Enterobacter... 486 e-136
ref|YP_407678.1| putative P4-type integrase [Shigella boydi... 473 e-132
ref|NP_458759.1| bacteriophage integrase [Salmonella enteri... 469 e-130
ref|ZP_00922739.1| COG0582: Integrase [Shigella dysenteriae... 469 e-130
ref|YP_455318.1| phage integrase [Sodalis glossinidius str.... 468 e-130
emb|CAB59974.1| integrase [Escherichia coli] 468 e-130
ref|NP_931626.1| hypothetical protein plu4460 [Photorhabdus... 468 e-130
emb|CAA08754.1| integrase [Yersinia pseudotuberculosis] 465 e-129
ref|NP_754341.1| Prophage P4 integrase [Escherichia coli CF... 464 e-129
ref|NP_405478.1| integrase [Yersinia pestis CO92] >gi|22126... 463 e-129
emb|CAJ87584.1| putative prophage P4 integrase [Escherichia... 462 e-128
ref|ZP_00795109.1| COG0582: Integrase [Yersinia pestis Angola] 460 e-128
ref|ZP_00718588.1| COG0582: Integrase [Escherichia coli E11... 459 e-127
ref|ZP_00925339.1| COG0582: Integrase [Escherichia coli 101-1] 453 e-125
ref|ZP_00712223.1| COG0582: Integrase [Escherichia coli B171] 451 e-125
gb|AAD17660.1| unknown [Yersinia pestis] 450 e-125
gb|ABB89924.1| P4-like integrase [Escherichia coli] 442 e-122
ref|ZP_00823958.1| COG0582: Integrase [Yersinia mollaretii ... 436 e-120
ref|ZP_00695621.1| COG0582: Integrase [Shigella boydii BS512] 436 e-120
gb|ABB89926.1| P4-like integrase [Escherichia coli] >gi|827... 429 e-118
gb|ABB89923.1| P4-like integrase [Escherichia coli] 429 e-118
gb|ABB89925.1| P4-like integrase [Escherichia coli] 428 e-118
ref|YP_348793.1| Phage integrase [Pseudomonas fluorescens P... 425 e-117
ref|ZP_01642095.1| phage integrase [Pseudomonas putida W619... 423 e-116
gb|AAL01551.1| IntB [Escherichia fergusonii] 418 e-115
ref|ZP_00699495.1| COG0582: Integrase [Shigella boydii BS512] 414 e-114
ref|YP_410566.1| putative P4-type integrase [Shigella boydi... 410 e-113
ref|ZP_00726491.1| COG0582: Integrase [Escherichia coli F11] 407 e-112
ref|YP_455784.1| putative phage integrase [Sodalis glossini... 403 e-110
ref|ZP_01368179.1| hypothetical protein PaerPA_01005335 [Ps... 395 e-108
ref|ZP_00926261.1| COG0582: Integrase [Escherichia coli 101-1] 389 e-106
ref|NP_290910.1| partial putative integrase [Escherichia co... 379 e-103
ref|NP_313280.1| putative integrase [Escherichia coli O157:... 379 e-103
ref|NP_754310.1| Prophage P4 integrase [Escherichia coli CF... 379 e-103
ref|YP_541179.1| putative integrase [Escherichia coli UTI89... 353 8e-96
gb|EAG93834.1| unknown [environmental sequence] 352 3e-95
emb|CAC39282.1| integrase [Escherichia coli] 346 2e-93
ref|NP_290239.1| putative integrase for prophage 933L and t... 346 2e-93
ref|NP_756353.1| Putative prophage integrase [Escherichia c... 346 2e-93
ref|YP_691185.1| putative integrase [Shigella flexneri 5 st... 345 4e-93
ref|YP_312525.1| putative integrase [Shigella sonnei Ss046]... 343 1e-92
ref|ZP_00715634.1| COG0582: Integrase [Escherichia coli B7A] 342 2e-92
ref|NP_709437.1| putative integrase [Shigella flexneri 2a s... 338 5e-91
ref|YP_072362.1| putative integrase [Yersinia pseudotubercu... 337 8e-91
ref|YP_671637.1| putative phage integrase [Escherichia coli... 335 4e-90
ref|ZP_00829773.1| COG0582: Integrase [Yersinia frederiksen... 328 5e-88
ref|ZP_00825977.1| COG0582: Integrase [Yersinia mollaretii ... 327 8e-88
emb|CAB59975.1| integrase [Escherichia coli] 326 1e-87
ref|ZP_01112295.1| prophage CP4-like integrase [Alteromonas... 322 2e-86
ref|ZP_01089574.1| probable cp4-like integrase protein [Bla... 318 3e-85
ref|ZP_00701012.1| COG0582: Integrase [Escherichia coli E24... 318 4e-85
ref|YP_621628.1| phage integrase [Burkholderia cenocepacia ... 318 5e-85
ref|NP_519089.1| PROBABLE CP4-LIKE INTEGRASE PROTEIN [Ralst... 316 1e-84
ref|NP_900321.1| prophage CP4-like integrase [Chromobacteri... 315 3e-84
ref|YP_332701.1| prophage CP4-like integrase [Burkholderia ... 314 5e-84
ref|NP_837605.1| putative integrase [Shigella flexneri 2a s... 314 7e-84
ref|ZP_00942828.1| DNA integration/recombination/invertion ... 313 9e-84
ref|ZP_00829262.1| COG0582: Integrase [Yersinia frederiksen... 313 9e-84
ref|ZP_00704574.1| COG0582: Integrase [Escherichia coli HS] 312 3e-83
ref|YP_774311.1| phage integrase family protein [Burkholder... 312 3e-83
ref|YP_001008254.1| putative phage integrase [Yersinia ente... 310 8e-83
ref|ZP_00795898.1| COG0582: Integrase [Yersinia pestis Angola] 310 8e-83
ref|ZP_00422887.1| Phage integrase [Burkholderia vietnamien... 310 1e-82
ref|NP_407466.1| putative phage integrase [Yersinia pestis ... 310 1e-82
ref|NP_404505.1| integrase [Yersinia pestis CO92] >gi|22127... 309 2e-82
ref|ZP_00834743.1| COG0582: Integrase [Yersinia intermedia ... 308 4e-82
ref|ZP_00826791.1| COG0582: Integrase [Yersinia mollaretii ... 308 4e-82
ref|YP_774290.1| phage integrase family protein [Burkholder... 308 5e-82
ref|YP_071664.1| putative phage integrase. [Yersinia pseudo... 308 5e-82
ref|ZP_01538078.1| phage integrase [Serratia proteamaculans... 307 7e-82
ref|YP_689484.1| putative integrase [Shigella flexneri 5 st... 307 7e-82
ref|YP_419851.1| Integrase [Magnetospirillum magneticum AMB... 306 1e-81
ref|ZP_01535688.1| phage integrase [Serratia proteamaculans... 306 1e-81
ref|ZP_01213610.1| hypothetical protein Bpse17_02001318 [Bu... 306 1e-81
ref|ZP_00822421.1| COG0582: Integrase [Yersinia bercovieri ... 306 2e-81
ref|ZP_01317570.1| hypothetical protein Bpse1_03003064 [Bur... 305 4e-81
ref|YP_363948.1| phage-related integrase [Xanthomonas campe... 304 6e-81
ref|NP_106945.1| symbiosis island integrase [Mesorhizobium ... 303 9e-81
ref|YP_314701.1| putative integrase prophage protein [Thiob... 302 2e-80
ref|NP_927495.1| hypothetical protein plu0125 [Photorhabdus... 302 2e-80
gb|EAY47615.1| phage integrase family protein [Escherichia ... 300 1e-79
ref|NP_285976.1| integrase protein for prophage CP-933I [Es... 299 2e-79
ref|NP_308316.1| putative integrase [Escherichia coli O157:... 299 2e-79
ref|YP_461774.1| DNA integration/recombination/inversion pr... 295 3e-78
ref|YP_901965.1| phage integrase family protein [Pelobacter... 295 3e-78
gb|AAC24508.1| symbiosis island integrase [Mesorhizobium lo... 295 4e-78
ref|ZP_00981990.1| COG0582: Integrase [Burkholderia cenocep... 293 1e-77
ref|YP_772805.1| phage integrase family protein [Burkholder... 292 2e-77
ref|ZP_01328742.1| hypothetical protein BpseS_03003106 [Bur... 291 5e-77
ref|YP_522619.1| phage integrase [Rhodoferax ferrireducens ... 290 8e-77
ref|NP_795075.1| site-specific recombinase, phage integrase... 290 8e-77
ref|YP_001020283.1| prophage CP4-like integrase [Methylibiu... 290 1e-76
ref|YP_912072.1| phage integrase family protein [Chlorobium... 288 4e-76
ref|YP_458887.1| symbiosis island integrase [Erythrobacter ... 287 7e-76
ref|NP_519992.1| PUTATIVE INTEGRASE PROPHAGE PROTEIN [Ralst... 287 9e-76
ref|ZP_00418143.1| Phage integrase [Azotobacter vinelandii ... 286 2e-75
gb|EAJ38336.1| unknown [environmental sequence] 285 3e-75
ref|ZP_01641043.1| phage integrase [Pseudomonas putida W619... 285 3e-75
ref|ZP_00702244.1| COG0582: Integrase [Escherichia coli E24... 285 3e-75
ref|ZP_01664273.1| putative integrase prophage protein [Ral... 285 3e-75
ref|YP_441483.1| site-specific recombinase, phage integrase... 284 6e-75
ref|YP_412868.1| Phage integrase [Nitrosospira multiformis ... 284 6e-75
ref|ZP_01593434.1| phage integrase [Geobacter lovleyi SZ] >... 283 1e-74
ref|YP_357234.1| prophage P4 integrase [Pelobacter carbinol... 283 1e-74
ref|YP_335034.1| prophage CP4-like integrase [Burkholderia ... 283 2e-74
ref|YP_296571.1| Phage integrase [Ralstonia eutropha JMP134... 283 2e-74
gb|EAY45569.1| phage integrase family protein [Escherichia ... 282 3e-74
gb|EAY45779.1| phage integrase family protein [Escherichia ... 281 5e-74
ref|ZP_00423636.1| Phage integrase [Burkholderia vietnamien... 279 2e-73
ref|ZP_01196158.1| probable cp4-like integrase protein [Xan... 279 2e-73
ref|ZP_00862700.1| probable cp4-like integrase protein [Bra... 278 4e-73
ref|YP_530520.1| phage integrase [Rhodopseudomonas palustri... 278 4e-73
ref|YP_051550.1| phage integrase [Erwinia carotovora subsp.... 278 6e-73
ref|ZP_01304201.1| symbiosis island integrase [Sphingomonas... 276 1e-72
ref|ZP_01002803.1| symbiosis island integrase [Loktanella v... 276 1e-72
ref|YP_315763.1| probable cp4-like integrase protein [Thiob... 276 2e-72
ref|ZP_01559922.1| phage integrase [Burkholderia cenocepaci... 275 5e-72
ref|ZP_01146673.1| symbiosis island integrase [Acidiphilium... 275 5e-72
ref|ZP_00946362.1| DNA integration/recombination/invertion ... 273 1e-71
ref|YP_748674.1| phage integrase family protein [Nitrosomon... 273 1e-71
ref|ZP_01200181.1| symbiosis island integrase [Xanthobacter... 272 2e-71
ref|YP_747954.1| phage integrase family protein [Nitrosomon... 271 4e-71
ref|YP_747345.1| phage integrase family protein [Nitrosomon... 271 4e-71
gb|AAK49816.1|AF251435_1 integrase-like gene 1 [Escherichia... 270 1e-70
ref|YP_155041.1| Integrase [Idiomarina loihiensis L2TR] >gi... 270 2e-70
ref|YP_010746.1| site-specific recombinase, phage integrase... 268 6e-70
ref|ZP_01304286.1| symbiosis island integrase [Sphingomonas... 267 1e-69
ref|ZP_01608517.1| phage integrase family protein [Sphingom... 266 1e-69
gb|EAH98394.1| unknown [environmental sequence] 265 3e-69
ref|ZP_01594126.1| phage integrase [Geobacter lovleyi SZ] >... 265 4e-69
ref|YP_285904.1| Phage integrase [Dechloromonas aromatica R... 265 4e-69
ref|YP_760305.1| site-specific recombinase, phage integrase... 262 2e-68
ref|YP_682505.1| CP4-like integrase, putative [Roseobacter ... 260 9e-68
ref|ZP_01043440.1| Integrase [Idiomarina baltica OS145] >gi... 260 9e-68
ref|YP_900993.1| phage integrase family protein [Pelobacter... 259 2e-67
ref|ZP_01305001.1| symbiosis island integrase [Sphingomonas... 256 2e-66
ref|YP_575650.1| phage integrase [Nitrobacter hamburgensis ... 255 3e-66
ref|YP_459807.1| symbiosis island integrase [Erythrobacter ... 255 4e-66
ref|YP_315831.1| putative integrase prophage protein [Thiob... 253 2e-65
ref|YP_064161.1| prophage integrase [Desulfotalea psychroph... 252 3e-65
ref|YP_982866.1| phage integrase family protein [Polaromona... 252 3e-65
ref|YP_164334.1| integrase [Pseudomonas aeruginosa phage F1... 250 1e-64
ref|ZP_01614768.1| site-specific recombinase, phage integra... 249 2e-64
ref|YP_773729.1| phage integrase family protein [Burkholder... 249 2e-64
ref|YP_364346.1| integrase [Xanthomonas campestris pv. vesi... 249 2e-64
ref|ZP_01528175.1| phage integrase [Pseudomonas mendocina y... 249 3e-64
ref|YP_760435.1| site-specific recombinase, phage integrase... 248 4e-64
ref|ZP_00921832.1| COG0582: Integrase [Shigella dysenteriae... 248 5e-64
gb|AAT28215.1| IntS [Mesorhizobium sp. WSM1283] 246 1e-63
ref|YP_997525.1| phage integrase family protein [Verminephr... 245 4e-63
gb|AAT28213.1| IntS [Mesorhizobium sp. WSM1497] 242 3e-62
ref|YP_734905.1| phage integrase family protein [Shewanella... 242 3e-62
ref|ZP_01039238.1| probable cp4-like integrase protein [Ery... 241 6e-62
gb|EAI51513.1| unknown [environmental sequence] 241 8e-62
ref|ZP_01528959.1| phage integrase [Pseudomonas mendocina y... 241 8e-62
ref|ZP_01164910.1| putative integrase prophage protein [Oce... 241 8e-62
gb|AAW31811.1| IntD [Dichelobacter nodosus] 240 1e-61
ref|NP_717087.1| site-specific recombinase, phage integrase... 240 1e-61
gb|AAT28216.1| IntS [Mesorhizobium ciceri subsp. biserrulae... 239 2e-61
ref|YP_001002721.1| phage integrase family protein [Halorho... 239 2e-61
gb|EAY48379.1| phage integrase family protein [Escherichia ... 239 3e-61
gb|AAT28214.1| IntS [Mesorhizobium sp. WSM1284] 239 3e-61
gb|AAT28218.1| IntS [Mesorhizobium sp. WSM2074] 239 3e-61
ref|NP_417111.1| CP4-57 prophage; integrase [Escherichia co... 238 4e-61
ref|ZP_01476421.1| hypothetical protein VEx2w_02000899 [Vib... 238 4e-61
ref|ZP_01519922.1| phage integrase [Comamonas testosteroni ... 238 5e-61
ref|YP_577272.1| phage integrase [Nitrobacter hamburgensis ... 238 6e-61
ref|YP_048945.1| prophage integrase [Erwinia carotovora sub... 238 6e-61
ref|ZP_00971985.1| COG0582: Integrase [Pseudomonas aerugino... 238 6e-61
gb|AAT28220.1| IntS [Mesorhizobium sp. WSM1276] 237 8e-61
ref|ZP_00696348.1| COG0582: Integrase [Shigella boydii BS512] 237 8e-61
ref|ZP_01601820.1| phage integrase family protein [Shewanel... 236 1e-60
emb|CAB57348.1| integrase [Dichelobacter nodosus] 236 2e-60
ref|ZP_01304363.1| symbiosis island integrase [Sphingomonas... 235 3e-60
ref|YP_408540.1| putative CP4-57-type integrase [Shigella b... 235 3e-60
ref|YP_296398.1| Phage integrase [Ralstonia eutropha JMP134... 235 3e-60
ref|YP_968865.1| phage integrase family protein [Acidovorax... 235 4e-60
gb|EAJ69566.1| unknown [environmental sequence] 234 5e-60
ref|YP_050841.1| prophage integrase [Erwinia carotovora sub... 234 9e-60
ref|YP_738896.1| phage integrase family protein [Shewanella... 234 9e-60
ref|YP_615498.1| phage integrase [Sphingopyxis alaskensis R... 234 9e-60
ref|YP_272965.1| prophage PSPPH01, site-specific recombinas... 233 1e-59
ref|ZP_00736749.1| COG0582: Integrase [Escherichia coli 53638] 233 1e-59
ref|NP_933610.1| phage integrase [Vibrio vulnificus YJ016] ... 233 2e-59
ref|ZP_01482049.1| hypothetical protein VchoR_02002048 [Vib... 232 4e-59
gb|ABM65820.1| IntA [Mesorhizobium sp. R88B] 231 5e-59
ref|NP_230494.1| integrase, phage family [Vibrio cholerae O... 231 5e-59
ref|YP_870585.1| phage integrase family protein [Shewanella... 231 8e-59
ref|ZP_01591213.1| phage integrase [Enterobacter sp. 638] >... 230 1e-58
ref|YP_457690.1| probable cp4-like integrase protein [Eryth... 229 2e-58
ref|YP_650298.1| integrase [Yersinia pestis Antiqua] >gi|10... 228 4e-58
ref|YP_957942.1| phage integrase family protein [Marinobact... 228 4e-58
ref|NP_542261.1| unknown [Sinorhizobium meliloti phage PBC5... 228 5e-58
ref|ZP_00900490.1| integrase, phage family [Pseudomonas put... 228 5e-58
ref|YP_346479.1| Phage integrase [Pseudomonas fluorescens P... 228 7e-58
ref|YP_113189.1| site-specific recombinase, phage integrase... 228 7e-58
ref|NP_106365.1| symbiosis island integrase [Mesorhizobium ... 227 9e-58
emb|CAA27775.1| unnamed protein product [Escherichia coli] 227 1e-57
ref|NP_935055.1| phage integrase [Vibrio vulnificus YJ016] ... 226 2e-57
ref|YP_942997.1| phage integrase family protein [Psychromon... 226 3e-57
ref|ZP_01042465.1| Integrase [Idiomarina baltica OS145] >gi... 226 3e-57
ref|YP_581612.1| phage integrase [Psychrobacter cryohalolen... 226 3e-57
ref|NP_708468.1| putative CP4-57-type integrase [Shigella f... 225 3e-57
ref|YP_156036.1| Integrase [Idiomarina loihiensis L2TR] >gi... 225 4e-57
ref|YP_001021598.1| integrase (int) [Methylibium petroleiph... 224 6e-57
ref|YP_160175.1| integrase [Azoarcus sp. EbN1] >gi|56314629... 224 7e-57
ref|NP_933353.1| phage integrase [Vibrio vulnificus YJ016] ... 224 7e-57
ref|NP_793168.1| site-specific recombinase, phage integrase... 224 1e-56
ref|YP_269617.1| site-specific recombinase, phage integrase... 224 1e-56
ref|YP_580893.1| phage integrase [Psychrobacter cryohalolen... 224 1e-56
ref|YP_986229.1| phage integrase family protein [Acidovorax... 223 1e-56
gb|AAB00935.1| integrase [Dichelobacter nodosus] 223 1e-56
ref|YP_943793.1| phage integrase family protein [Psychromon... 222 4e-56
ref|YP_719637.1| integrase [Haemophilus somnus 129PT] >gi|1... 221 5e-56
ref|ZP_00836768.1| Phage integrase [Shewanella sp. PV-4] >g... 221 5e-56
gb|EAY45856.1| phage integrase family protein [Escherichia ... 221 6e-56
ref|ZP_00717776.1| COG0582: Integrase [Escherichia coli B7A] 221 6e-56
ref|NP_958192.1| gene 16 protein [Enterobacteria phage Sf6]... 221 8e-56
ref|ZP_00829772.1| COG4644: Transposase and inactivated der... 221 8e-56
ref|ZP_00897759.1| site-specific recombinase, phage integra... 220 1e-55
ref|ZP_00827165.1| COG0582: Integrase [Yersinia mollaretii ... 220 1e-55
ref|YP_001005326.1| putative prophage integrase [Yersinia e... 219 2e-55
ref|NP_670380.1| prophage CP4-57 integrase [Yersinia pestis... 219 2e-55
ref|NP_404712.1| putative prophage integrase [Yersinia pest... 219 2e-55
gb|EAH06900.1| unknown [environmental sequence] 219 2e-55
ref|YP_541631.1| possible prophage integrase [Escherichia c... 219 3e-55
ref|NP_416850.1| CPS-53 (KpLE1) prophage; predicted prophag... 219 3e-55
sp|P76542|INTZ_ECOLI Putative prophage CPZ-55 integrase 218 4e-55
ref|NP_416937.1| CPZ-55 prophage; predicted integrase [Esch... 218 4e-55
ref|ZP_00822641.1| COG0582: Integrase [Yersinia bercovieri ... 218 4e-55
ref|NP_231394.1| integrase, phage family [Vibrio cholerae O... 218 4e-55
gb|EAY41707.1| phage integrase [Vibrio cholerae MZO-3] 218 5e-55
ref|YP_528215.1| phage integrase [Saccharophagus degradans ... 218 5e-55
ref|NP_112034.1| integrase [Bacteriophage HK620] >gi|135175... 218 7e-55
gb|EAY35703.1| integrase, phage family [Vibrio cholerae 1587] 217 9e-55
ref|ZP_01487155.1| hypothetical protein VchoV5_02000184 [Vi... 217 1e-54
ref|YP_987805.1| phage integrase family protein [Acidovorax... 217 1e-54
gb|AAQ17120.1| integrase [Pseudomonas putida] 217 1e-54
ref|YP_690233.1| prophage CP4-57 integrase [Shigella flexne... 216 2e-54
ref|YP_986697.1| phage integrase family protein [Acidovorax... 216 2e-54
ref|NP_230167.1| phage integrase [Vibrio cholerae O1 biovar... 216 2e-54
ref|ZP_00921488.1| COG0582: Integrase [Shigella dysenteriae... 216 2e-54
ref|ZP_01271195.1| Phage integrase [Psychrobacter sp. PRwf-... 216 2e-54
ref|ZP_00833867.1| COG0582: Integrase [Yersinia intermedia ... 216 2e-54
ref|NP_288921.1| putative prophage integrase [Escherichia c... 216 3e-54
ref|NP_311258.1| putative prophage Sf6-like integrase [Esch... 216 3e-54
ref|ZP_01301960.1| putative phage integrase [Sphingomonas s... 215 3e-54
ref|YP_311283.1| putative prophage Sf6-like integrase [Shig... 214 8e-54
gb|EAY42297.1| integrase, phage family [Vibrio cholerae MZO-3] 213 1e-53
ref|YP_157805.1| phage-related integrase [Azoarcus sp. EbN1... 213 1e-53
ref|YP_960635.1| phage integrase family protein [Marinobact... 213 1e-53
ref|YP_524073.1| phage integrase [Rhodoferax ferrireducens ... 213 2e-53
ref|NP_790934.1| site-specific recombinase, phage integrase... 213 2e-53
gb|EAB14893.1| unknown [environmental sequence] 212 3e-53
ref|ZP_01223515.1| integrase, phage family protein [marine ... 211 6e-53
ref|ZP_00985286.1| COG0582: Integrase [Burkholderia dolosa ... 211 6e-53
gb|EAC10228.1| unknown [environmental sequence] 209 2e-52
ref|ZP_01639372.1| phage integrase [Pseudomonas putida W619... 209 2e-52
ref|YP_746264.1| phage integrase family protein [Nitrosomon... 209 2e-52
ref|ZP_00829036.1| COG0582: Integrase [Yersinia frederiksen... 209 3e-52
gb|AAN62223.1|AF440524_10 putative integrase [Pseudomonas a... 208 4e-52
ref|ZP_00990392.1| site-specific recombinase, phage integra... 208 5e-52
ref|NP_797456.1| integrase, phage family [Vibrio parahaemol... 205 4e-51
ref|ZP_00952109.1| symbiosis island integrase [Oceanicaulis... 205 4e-51
ref|ZP_01065091.1| site-specific recombinase, phage integra... 204 8e-51
gb|EAH51859.1| unknown [environmental sequence] 203 1e-50
ref|YP_745623.1| DNA integration/recombination/inversion pr... 203 2e-50
ref|YP_943821.1| phage integrase family protein [Psychromon... 202 2e-50
ref|ZP_00156144.1| COG0582: Integrase [Haemophilus influenz... 202 3e-50
ref|ZP_01656882.1| phage-related integrase [Parvibaculum la... 199 2e-49
ref|YP_206506.1| DNA integration/recombination/invertion pr... 199 2e-49
ref|NP_806358.1| hypothetical protein t2647 [Salmonella ent... 198 4e-49
gb|EAF04807.1| unknown [environmental sequence] 197 7e-49
ref|YP_998386.1| phage integrase family protein [Verminephr... 197 7e-49
gb|EAG79556.1| unknown [environmental sequence] 196 2e-48
ref|YP_941700.1| phage integrase family protein [Psychromon... 196 2e-48
ref|NP_638493.1| phage-related integrase [Xanthomonas campe... 194 8e-48
ref|YP_316581.1| putative phage integrase [Thiobacillus den... 194 1e-47
gb|AAN62094.1|AF440523_1 putative integrase [Pseudomonas ae... 193 2e-47
ref|ZP_00974553.1| COG0582: Integrase [Pseudomonas aerugino... 193 2e-47
gb|EAY40870.1| integrase, phage family [Vibrio cholerae MZO-3] 192 2e-47
gb|EAH05992.1| unknown [environmental sequence] 191 5e-47
ref|YP_733819.1| phage integrase family protein [Shewanella... 191 7e-47
gb|EAJ99969.1| unknown [environmental sequence] 191 9e-47
ref|YP_737811.1| phage integrase family protein [Shewanella... 190 1e-46
ref|YP_363992.1| phage-related integrase [Xanthomonas campe... 190 2e-46
ref|YP_869430.1| phage integrase family protein [Shewanella... 189 2e-46
gb|EAJ34084.1| unknown [environmental sequence] 189 3e-46
ref|YP_248954.1| prophage CP4-57-like integrase [Haemophilu... 189 3e-46
ref|ZP_01366023.1| hypothetical protein PaerPA_01003154 [Ps... 189 3e-46
ref|ZP_01449729.1| DNA integration/recombination/inversion ... 188 6e-46
ref|YP_243085.1| phage-related integrase [Xanthomonas campe... 188 6e-46
ref|NP_637474.1| phage-related integrase [Xanthomonas campe... 188 6e-46
ref|YP_559901.1| Putative phage integrase [Burkholderia xen... 187 1e-45
ref|YP_331724.1| Integrase or site-specific recombinase [Bu... 187 1e-45
ref|YP_106707.1| putative phage integrase [Burkholderia pse... 187 1e-45
emb|CAA06238.1| integrase [Pseudomonas putida] >gi|40019127... 187 1e-45
ref|NP_299007.1| phage-related integrase [Xylella fastidios... 187 1e-45
gb|EAG10963.1| unknown [environmental sequence] 186 2e-45
ref|ZP_01302677.1| symbiosis island integrase [Sphingomonas... 186 2e-45
ref|YP_158323.1| integrase (int) [Azoarcus sp. EbN1] >gi|56... 186 3e-45
ref|ZP_00755609.1| COG0582: Integrase [Vibrio cholerae O395... 186 3e-45
gb|EAD96713.1| unknown [environmental sequence] 185 4e-45
ref|YP_719549.1| integrase [Haemophilus somnus 129PT] >gi|1... 184 6e-45
gb|EAF68591.1| unknown [environmental sequence] 184 1e-44
gb|EAB89343.1| unknown [environmental sequence] 184 1e-44
ref|YP_443726.1| site-specific recombinase, phage integrase... 184 1e-44
ref|ZP_01660286.1| putative integrase protein [Ralstonia pi... 183 1e-44
ref|ZP_01449665.1| site-specific recombinase, phage integra... 182 2e-44
ref|ZP_01583034.1| phage integrase [Delftia acidovorans SPH... 182 3e-44
ref|YP_985634.1| phage integrase family protein [Acidovorax... 182 4e-44
ref|YP_364029.1| phage-related integrase [Xanthomonas campe... 182 4e-44
ref|NP_520610.1| PUTATIVE INTEGRASE PROTEIN [Ralstonia sola... 181 7e-44
ref|NP_699555.1| site-specific recombinase, phage integrase... 180 2e-43
ref|YP_934188.1| putative integrase [Azoarcus sp. BH72] >gi... 179 3e-43
ref|YP_160819.1| integrase or site-specific recombinase [Az... 179 3e-43
ref|ZP_00833859.1| COG0582: Integrase [Yersinia intermedia ... 178 5e-43
ref|ZP_01085982.1| prophage CP4-like integrase [Synechococc... 178 6e-43
ref|YP_167162.1| site-specfic recombinase, phage integrase ... 176 2e-42
ref|ZP_01104599.1| phage integrase family [gamma proteobact... 176 2e-42
ref|YP_262056.1| site-specific recombinase, phage integrase... 176 2e-42
ref|YP_001023011.1| phage-related integrase [Methylibium pe... 176 2e-42
gb|AAF27347.1|AF198256_1 CP4-57 integrase-like protein [Hae... 176 3e-42
ref|ZP_01081615.1| prophage CP4-like integrase [Synechococc... 176 3e-42
ref|ZP_00963170.1| site-specfic recombinase, phage integras... 176 3e-42
ref|ZP_00729997.1| COG0582: Integrase [Escherichia coli E22] 176 3e-42
gb|EAU00342.1| site-specific recombinase, phage integrase f... 175 4e-42
ref|YP_342664.1| Phage integrase [Nitrosococcus oceani ATCC... 175 4e-42
ref|YP_958997.1| phage integrase family protein [Marinobact... 175 4e-42
ref|YP_986780.1| phage integrase family protein [Acidovorax... 174 7e-42
ref|ZP_01156819.1| site-specfic recombinase, phage integras... 174 1e-41
ref|YP_789365.1| putative integrase [Pseudomonas aeruginosa... 173 2e-41
ref|YP_425446.1| Phage integrase [Rhodospirillum rubrum ATC... 172 3e-41
ref|NP_887455.1| putative integrase [Bordetella bronchisept... 172 3e-41
ref|NP_838069.1| putative integrase [Shigella flexneri 2a s... 172 3e-41
ref|YP_558483.1| Putative CP4-like integrase [Burkholderia ... 172 4e-41
ref|ZP_00706593.1| COG0582: Integrase [Escherichia coli HS] 171 6e-41
gb|EAY45780.1| putative P4-type integrase [Escherichia coli B] 171 7e-41
ref|ZP_00974734.1| COG0582: Integrase [Pseudomonas aerugino... 171 1e-40
gb|AAT96071.1| site-specific recombinase [Pseudomonas virid... 170 2e-40
ref|NP_642603.1| phage-related integrase [Xanthomonas axono... 169 2e-40
ref|ZP_00715734.1| COG0582: Integrase [Escherichia coli B7A] 169 2e-40
ref|ZP_00756537.1| COG0582: Integrase [Vibrio cholerae O395... 169 2e-40
ref|NP_461667.1| integrase-like protein [Salmonella phage F... 169 3e-40
ref|ZP_01127005.1| prophage CP4-like integrase [Nitrococcus... 168 5e-40
ref|YP_985520.1| phage integrase family protein [Acidovorax... 168 6e-40
ref|NP_779202.1| phage-related integrase [Xylella fastidios... 168 6e-40
ref|YP_364215.1| phage-related integrase [Xanthomonas campe... 168 6e-40
ref|ZP_01377615.1| hypothetical protein Cjejd_01001757 [Cam... 167 8e-40
gb|ABF59992.1| integrase [Escherichia coli] 167 1e-39
ref|ZP_01476454.1| hypothetical protein VEx2w_02000932 [Vib... 167 1e-39
ref|YP_110398.1| phage integrase [Burkholderia pseudomallei... 166 2e-39
ref|ZP_01476766.1| hypothetical protein VEx2w_02000499 [Vib... 166 2e-39
gb|EAY45568.1| putative P4-type integrase [Escherichia coli B] 166 3e-39
gb|EAG63278.1| unknown [environmental sequence] 164 9e-39
ref|YP_158425.1| phage-related integrase [Azoarcus sp. EbN1... 164 9e-39
ref|ZP_01503565.1| phage integrase [Burkholderia phymatum S... 164 1e-38
gb|EAD19171.1| unknown [environmental sequence] 163 2e-38
ref|NP_286655.1| putative P4-family integrase [Escherichia ... 163 2e-38
gb|EAE30958.1| unknown [environmental sequence] 162 3e-38
ref|YP_540104.1| putative P4-family integrase [Escherichia ... 162 3e-38
gb|EAI44794.1| unknown [environmental sequence] 162 3e-38
ref|YP_974915.1| putative Phage integrase [Neisseria mening... 162 3e-38
ref|YP_001026998.1| integrase [Burkholderia mallei NCTC 102... 162 4e-38
ref|YP_440207.1| integrase [Burkholderia thailandensis E264... 162 4e-38
ref|YP_456910.1| site-specfic recombinase, phage integrase ... 162 4e-38
gb|EAK12640.1| unknown [environmental sequence] 161 6e-38
gb|AAL08426.1|AF326777_1 integrase [Shigella flexneri 2a] 161 8e-38
ref|YP_207612.1| putative phage integrase, putative phage a... 161 8e-38
ref|NP_753090.1| Putative P4-family integrase [Escherichia ... 161 8e-38
gb|EAJ41815.1| unknown [environmental sequence] 160 1e-37
gb|EAI72529.1| unknown [environmental sequence] 159 4e-37
ref|ZP_01146265.1| putative cp4-like integrase protein [Aci... 159 4e-37
ref|YP_050276.1| prophage integrase [Erwinia carotovora sub... 158 5e-37
gb|ABB76124.1| integrase [Enterobacter sp. Ni15] 158 6e-37
ref|YP_532925.1| phage integrase [Rhodopseudomonas palustri... 158 6e-37
ref|ZP_01512754.1| phage integrase [Burkholderia phytofirma... 157 8e-37
ref|YP_782175.1| phage integrase family protein [Rhodopseud... 156 2e-36
ref|ZP_00957098.1| hypothetical protein OA2633_08894 [Ocean... 156 2e-36
ref|ZP_01656781.1| integrase [Parvibaculum lavamentivorans ... 155 4e-36
ref|ZP_01422790.1| Phage integrase [Caulobacter sp. K31] >g... 154 7e-36
ref|YP_718730.1| phage integrase [Haemophilus somnus 129PT]... 154 7e-36
ref|ZP_01304523.1| putative integrase prophage protein [Sph... 154 7e-36
ref|ZP_01199231.1| integrase or site-specific recombinase [... 154 9e-36
ref|NP_881685.1| putative integrase [Bordetella pertussis T... 154 1e-35
ref|ZP_01485325.1| hypothetical protein VchoV5_02002057 [Vi... 154 1e-35
ref|YP_583617.1| phage integrase [Ralstonia metallidurans C... 154 1e-35
ref|YP_559298.1| Putative phage integrase [Burkholderia xen... 152 3e-35
ref|ZP_01373751.1| hypothetical protein Ccon1_01001620 [Cam... 152 4e-35
ref|ZP_01046656.1| phage integrase [Nitrobacter sp. Nb-311A... 152 5e-35
ref|ZP_01511803.1| phage integrase [Burkholderia phytofirma... 150 1e-34
ref|YP_561013.1| Putative phage integrase [Burkholderia xen... 150 1e-34
ref|YP_773911.1| phage integrase family protein [Burkholder... 150 1e-34
ref|NP_707883.1| putative integrase [Shigella flexneri 2a s... 150 1e-34
ref|YP_318748.1| phage integrase [Nitrobacter winogradskyi ... 150 1e-34
ref|NP_246708.1| SlpA [Pasteurella multocida subsp. multoci... 150 2e-34
gb|EAF94543.1| unknown [environmental sequence] 149 2e-34
ref|ZP_01517619.1| phage integrase [Comamonas testosteroni ... 149 3e-34
ref|YP_405932.1| hypothetical protein SDY_4580 [Shigella dy... 149 4e-34
gb|EAI05792.1| unknown [environmental sequence] 148 7e-34
gb|EAG02611.1| unknown [environmental sequence] 147 9e-34
ref|YP_673064.1| phage integrase [Mesorhizobium sp. BNC1] >... 147 9e-34
ref|NP_107352.1| CP4-like integrase [Mesorhizobium loti MAF... 147 1e-33
ref|ZP_01524658.1| phage integrase [Pseudomonas mendocina y... 147 1e-33
ref|ZP_01302809.1| integrase [Sphingomonas sp. SKA58] >gi|9... 146 2e-33
ref|NP_947549.1| integrase [Rhodopseudomonas palustris CGA0... 146 2e-33
ref|YP_122423.1| hypothetical protein lpp0072 [Legionella p... 145 3e-33
ref|ZP_00702243.1| COG0582: Integrase [Escherichia coli E24... 145 6e-33
ref|YP_285542.1| Phage integrase [Dechloromonas aromatica R... 144 7e-33
ref|ZP_00913214.1| site-specfic recombinase, phage integras... 144 1e-32
ref|YP_001020820.1| integrase or site-specific recombinase ... 144 1e-32
gb|EAG07217.1| unknown [environmental sequence] 143 2e-32
ref|ZP_01557860.1| phage integrase [Burkholderia ambifaria ... 142 3e-32
ref|YP_853646.1| integrase-like protein [Escherichia coli A... 142 3e-32
ref|NP_848235.1| integrase [Enterobacteria phage epsilon15]... 142 3e-32
ref|YP_741481.1| phage integrase family protein [Alkalilimn... 142 3e-32
gb|EAC64795.1| unknown [environmental sequence] 142 4e-32
ref|YP_547820.1| phage integrase [Polaromonas sp. JS666] >g... 141 6e-32
ref|ZP_00986691.1| COG0582: Integrase [Burkholderia dolosa ... 141 6e-32
ref|YP_512286.1| putative integrase [Phage phiV10] >gi|7405... 141 8e-32
ref|YP_411617.1| Phage integrase [Nitrosospira multiformis ... 140 1e-31
ref|YP_352805.1| putative P4-family integrase [Rhodobacter ... 140 1e-31
ref|YP_264173.1| probable phage integrase [Psychrobacter ar... 140 2e-31
ref|NP_642500.1| phage-related integrase [Xanthomonas axono... 140 2e-31
ref|YP_971698.1| phage integrase family protein [Acidovorax... 139 2e-31
gb|EAC75783.1| unknown [environmental sequence] 139 3e-31
ref|ZP_00731852.1| phage integrase [Actinobacillus succinog... 139 3e-31
ref|NP_458757.1| integrase (fragment) [Salmonella enterica ... 138 7e-31
ref|YP_580866.1| phage integrase [Psychrobacter cryohalolen... 137 9e-31
gb|EAF71143.1| unknown [environmental sequence] 137 1e-30
ref|YP_898026.1| phage integrase [Francisella tularensis su... 137 2e-30
ref|YP_109183.1| putative phage integrase [Burkholderia pse... 136 2e-30
ref|YP_897682.1| phage integrase [Francisella tularensis su... 136 3e-30
ref|YP_745329.1| transposase [Granulibacter bethesdensis CG... 136 3e-30
ref|ZP_01146263.1| putative phage integrase [Acidiphilium c... 135 3e-30
ref|ZP_01102627.1| phage-related integrase [gamma proteobac... 135 3e-30
ref|ZP_01442124.1| putative P4-family integrase [Roseovariu... 135 4e-30
ref|ZP_00926262.1| COG0582: Integrase [Escherichia coli 101-1] 135 4e-30
ref|ZP_01642484.1| phage integrase [Stenotrophomonas maltop... 134 8e-30
ref|YP_264321.1| probable phage integrase [Psychrobacter ar... 134 1e-29
ref|ZP_01505926.1| phage integrase [Burkholderia phymatum S... 134 1e-29
gb|EAB17364.1| unknown [environmental sequence] 132 3e-29
gb|ABF00410.1| IntS [Mesorhizobium sp. WSM1497] 132 4e-29
gb|EAE58210.1| unknown [environmental sequence] 132 5e-29
ref|YP_284892.1| Phage integrase [Dechloromonas aromatica R... 132 5e-29
gb|EAD12782.1| unknown [environmental sequence] 131 6e-29
ref|NP_758615.1| integrase [Pseudomonas resinovorans] >gi|2... 131 8e-29
gb|EAF20623.1| unknown [environmental sequence] 130 1e-28
ref|ZP_01376224.1| hypothetical protein Ccur5_01001091 [Cam... 130 1e-28
ref|ZP_01422932.1| Phage integrase [Caulobacter sp. K31] >g... 130 1e-28
ref|NP_863067.1| putative integrase [Pseudomonas putida] >g... 130 1e-28
dbj|BAF30931.1| integrase [uncultured bacterium] >gi|116235... 130 2e-28
ref|NP_759369.1| Phage integrase [Vibrio vulnificus CMCP6] ... 130 2e-28
ref|NP_356793.1| hypothetical protein AGR_L_2007 [Agrobacte... 130 2e-28
ref|ZP_00894743.1| hypothetical protein Bpse110_02002936 [B... 130 2e-28
ref|ZP_01449678.1| symbiosis island integrase [alpha proteo... 129 2e-28
gb|ABF00408.1| IntS [Mesorhizobium sp. WSM1283] 129 2e-28
ref|ZP_01290806.1| Phage integrase [delta proteobacterium M... 129 2e-28
ref|YP_534847.1| integrase TnpI [Pseudomonas putida] >gi|90... 129 2e-28
gb|EAG02612.1| unknown [environmental sequence] 129 3e-28
gb|EAE38686.1| unknown [environmental sequence] 129 4e-28
gb|ABF00407.1| IntS [Mesorhizobium ciceri subsp. biserrulae... 128 5e-28
ref|NP_641995.1| phage-related integrase [Xanthomonas axono... 128 7e-28
gb|ABF00409.1| IntS [Mesorhizobium sp. WSM1284] 127 2e-27
ref|YP_555663.1| Putative phage integrase [Burkholderia xen... 127 2e-27
gb|EAG16578.1| unknown [environmental sequence] 126 3e-27
ref|ZP_01212692.1| hypothetical protein Bpse17_02002157 [Bu... 126 3e-27
ref|NP_387205.1| PUTATIVE INTEGRASE DNA PROTEIN [Sinorhizob... 126 3e-27
ref|NP_754284.1| Putative P4-family integrase [Escherichia ... 124 8e-27
ref|NP_105010.1| phage integrase [Mesorhizobium loti MAFF30... 124 8e-27
ref|YP_981208.1| phage integrase family protein [Polaromona... 124 8e-27
ref|ZP_00723115.1| COG0582: Integrase [Escherichia coli F11] 124 8e-27
ref|ZP_00823957.1| COG0582: Integrase [Yersinia mollaretii ... 124 8e-27
ref|ZP_01412938.1| putative P4-family integrase [Sinorhizob... 124 1e-26
ref|ZP_01271168.1| Phage integrase [Psychrobacter sp. PRwf-... 124 1e-26
ref|NP_894123.1| Phage integrase [Prochlorococcus marinus s... 124 1e-26
gb|EAG88283.1| unknown [environmental sequence] 122 3e-26
gb|EAG38093.1| unknown [environmental sequence] 122 4e-26
ref|YP_095103.1| integrase, phage related [Legionella pneum... 121 7e-26
ref|ZP_01143808.1| hypothetical protein AcryDRAFT_3042 [Aci... 121 7e-26
ref|ZP_01037365.1| putative P4-family integrase [Roseovariu... 121 7e-26
gb|EAK71718.1| unknown [environmental sequence] 121 9e-26
gb|EAI62119.1| unknown [environmental sequence] 121 9e-26
ref|YP_615898.1| phage integrase [Sphingopyxis alaskensis R... 121 9e-26
ref|YP_318713.1| integrase [Nitrobacter winogradskyi Nb-255... 120 2e-25
ref|YP_126420.1| hypothetical protein lpl1066 [Legionella p... 119 3e-25
ref|ZP_01422927.1| Phage integrase [Caulobacter sp. K31] >g... 119 4e-25
ref|YP_123415.1| hypothetical protein lpp1088 [Legionella p... 119 4e-25
ref|NP_520017.1| PUTATIVE INTEGRASE PROPHAGE PROTEIN [Ralst... 119 4e-25
ref|ZP_00416530.1| putative integrase prophage protein [Azo... 118 6e-25
ref|ZP_01156177.1| site-specfic recombinase, phage integras... 118 7e-25
ref|ZP_01484172.1| hypothetical protein VchoV5_02003263 [Vi... 118 7e-25
gb|EAG58743.1| unknown [environmental sequence] 117 1e-24
ref|ZP_01196705.1| putative P4-family integrase [Xanthobact... 117 1e-24
ref|ZP_01196710.1| putative P4-family integrase [Xanthobact... 117 1e-24
ref|ZP_01660909.1| putative integrase prophage protein [Ral... 117 2e-24
gb|EAG31606.1| unknown [environmental sequence] 116 2e-24
ref|YP_431950.1| Integrase [Hahella chejuensis KCTC 2396] >... 116 2e-24
ref|NP_752328.1| CP4-like integrase [Escherichia coli CFT07... 116 3e-24
ref|YP_983552.1| phage integrase family protein [Polaromona... 115 4e-24
ref|YP_996625.1| putative integrase prophage protein [Vermi... 115 5e-24
ref|YP_530045.1| phage integrase [Rhodopseudomonas palustri... 115 5e-24
gb|EAE50796.1| unknown [environmental sequence] 114 8e-24
ref|YP_985873.1| phage integrase family protein [Acidovorax... 114 8e-24
gb|EAC36221.1| unknown [environmental sequence] 114 1e-23
ref|ZP_01517620.1| hypothetical protein CtesDRAFT_2663 [Com... 114 1e-23
ref|YP_534363.1| phage integrase [Rhodopseudomonas palustri... 114 1e-23
gb|AAO49782.1| integrase protein Int-F1 [Pseudomonas putida] 113 2e-23
gb|EAH14346.1| unknown [environmental sequence] 113 2e-23
emb|CAD59441.1| putative prophage integrase protein [Pseudo... 112 3e-23
ref|NP_859800.1| integrase [Helicobacter hepaticus ATCC 514... 112 3e-23
gb|EAJ24521.1| unknown [environmental sequence] 112 4e-23
gb|EAH28395.1| unknown [environmental sequence] 112 4e-23
emb|CAC83130.1| putative prophage integrase [Bacteriophage ... 112 4e-23
gb|AAC16220.1| prophage cp4-57 integrase [Rhodobacter capsu... 112 4e-23
ref|NP_540619.1| TRANSPOSASE [Brucella melitensis 16M] >gi|... 112 4e-23
gb|EAG38223.1| unknown [environmental sequence] 112 5e-23
gb|EAG21042.1| unknown [environmental sequence] 112 5e-23
ref|YP_127815.1| hypothetical protein lpl2486 [Legionella p... 111 7e-23
gb|AAO21906.1| integrase [Escherichia coli] 111 9e-23
ref|YP_744972.1| DNA integration/recombination/inversion pr... 110 1e-22
ref|YP_508171.1| phage integrase [Jannaschia sp. CCS1] >gi|... 110 1e-22
ref|ZP_00898207.1| hypothetical protein PputDRAFT_5175 [Pse... 110 1e-22
ref|ZP_01492694.1| phage integrase [Polynucleobacter sp. QL... 110 2e-22
ref|NP_898190.1| phage integrase family [Synechococcus sp. ... 109 3e-22
ref|ZP_00989468.1| site-specific recombinase, phage integra... 109 3e-22
gb|EAD68873.1| unknown [environmental sequence] 108 4e-22
gb|AAL21649.1| putative integrase [Salmonella typhimurium LT2] 108 4e-22
ref|ZP_01546914.1| phage-related integrase [Stappia aggrega... 108 6e-22
ref|YP_410837.1| hypothetical protein Nmul_A0136 [Nitrososp... 108 6e-22
ref|ZP_00953553.1| site-specfic recombinase, phage integras... 108 6e-22
ref|YP_391679.1| Phage integrase [Thiomicrospira crunogena ... 108 8e-22
ref|NP_897755.1| phage integrase family [Synechococcus sp. ... 107 1e-21
ref|ZP_01004335.1| possible phage-related integrase [Loktan... 107 2e-21
ref|YP_902772.1| phage integrase family protein [Pelobacter... 107 2e-21
ref|NP_951126.1| integrative genetic element Gsu32, integra... 106 2e-21
ref|ZP_01034018.1| putative P4-family integrase [Roseovariu... 106 3e-21
ref|YP_410765.1| Phage integrase [Nitrosospira multiformis ... 105 4e-21
ref|YP_179404.1| site-specific recombinase, phage integrase... 105 4e-21
ref|ZP_01607622.1| hypothetical protein SwitDRAFT_2867 [Sph... 105 5e-21
ref|ZP_01302678.1| putative integrase [Sphingomonas sp. SKA... 105 5e-21
gb|AAQ64991.1| unknown [Salmonella typhimurium] 105 5e-21
ref|YP_033134.1| hypothetical phage integrase [Bartonella h... 105 5e-21
gb|EAD67929.1| unknown [environmental sequence] 105 6e-21
ref|YP_957686.1| phage integrase family protein [Marinobact... 105 6e-21
ref|ZP_01475028.1| hypothetical protein VEx2w_02002353 [Vib... 105 6e-21
ref|ZP_00369240.1| integrase, phage family VC1758 [Campylob... 105 6e-21
ref|YP_673122.1| CP4-like integrase [Mesorhizobium sp. BNC1... 105 6e-21
ref|YP_898032.1| phage integrase [Francisella tularensis su... 104 8e-21
ref|ZP_00862600.1| phage integrase [Bradyrhizobium sp. BTAi... 104 8e-21
ref|YP_901528.1| phage integrase family protein [Pelobacter... 104 8e-21
ref|YP_584554.1| phage-related integrase [Ralstonia metalli... 104 1e-20
ref|NP_635786.1| phage-related integrase [Xanthomonas campe... 103 1e-20
ref|YP_048532.1| putative integrase (partial) [Erwinia caro... 103 1e-20
ref|NP_708230.1| putative integrase [Shigella flexneri 2a s... 103 2e-20
ref|YP_268745.1| site-specific recombinase, phage integrase... 103 2e-20
ref|YP_958772.1| phage integrase family protein [Marinobact... 103 2e-20
ref|ZP_01483894.1| hypothetical protein VchoR_02000112 [Vib... 103 2e-20
ref|NP_933070.1| site-specific recombinase, phage integrase... 102 3e-20
ref|NP_384597.1| PUTATIVE INTEGRASE DNA PROTEIN [Sinorhizob... 102 3e-20
ref|YP_943794.1| phage integrase [Psychromonas ingrahamii 3... 102 4e-20
ref|YP_555664.1| Putative phage integrase [Burkholderia xen... 102 4e-20
ref|YP_420017.1| Integrase [Magnetospirillum magneticum AMB... 102 4e-20
ref|ZP_00991577.1| integrase, putative [Vibrio splendidus 1... 102 4e-20
ref|ZP_00959789.1| putative integrase DNA protein [Roseovar... 102 4e-20
ref|YP_584549.1| phage integrase [Ralstonia metallidurans C... 102 4e-20
gb|EAI03777.1| unknown [environmental sequence] 102 5e-20
ref|ZP_01617926.1| integrase, phage related protein [marine... 102 5e-20
ref|YP_998883.1| phage integrase family protein [Verminephr... 102 5e-20
gb|EAH59142.1| unknown [environmental sequence] 101 9e-20
gb|EAB57030.1| unknown [environmental sequence] 101 9e-20
gb|EAK16974.1| unknown [environmental sequence] 100 2e-19
gb|EAG74919.1| unknown [environmental sequence] 100 2e-19
gb|EAG10107.1| unknown [environmental sequence] 100 2e-19
gb|EAD11148.1| unknown [environmental sequence] 100 2e-19
gb|EAF80127.1| unknown [environmental sequence] 99 5e-19
ref|ZP_01140795.1| integrative genetic element Gsu32, integ... 99 5e-19
ref|ZP_00913458.1| site-specific recombinase, phage integra... 99 5e-19
ref|ZP_00415307.1| hypothetical protein AvinDRAFT_5833 [Azo... 99 5e-19
gb|EAI21164.1| unknown [environmental sequence] 98 8e-19
ref|ZP_01450918.1| prophage CP4-like integrase [Mariprofund... 98 8e-19
ref|ZP_01111104.1| site-specific recombinase, phage integra... 98 1e-18
gb|EAA82185.1| unknown [environmental sequence] 97 1e-18
ref|NP_102279.1| probable prophage integrase [Mesorhizobium... 97 1e-18
ref|ZP_01223778.1| putative phage integrase [marine gamma p... 97 2e-18
ref|ZP_01512750.1| phage integrase [Burkholderia phytofirma... 97 2e-18
ref|ZP_00490826.1| COG0582: Integrase [Burkholderia pseudom... 97 2e-18
gb|EAD84913.1| unknown [environmental sequence] 96 3e-18
ref|YP_403016.1| integrase [Shigella dysenteriae Sd197] >gi... 96 3e-18
ref|NP_461571.1| integrase-like protein [Salmonella typhimu... 96 3e-18
gb|EAC46628.1| unknown [environmental sequence] 96 4e-18
ref|ZP_01610066.1| phage integrase family protein [Sphingom... 96 4e-18
ref|ZP_01557895.1| hypothetical protein BamMC406DRAFT_2646 ... 96 5e-18
ref|NP_903521.1| probable prophage integrase [Chromobacteri... 96 5e-18
ref|NP_943130.1| AGR-L-2007p integrase [Pseudomonas sp. ND6... 95 9e-18
ref|YP_509488.1| phage integrase [Jannaschia sp. CCS1] >gi|... 94 1e-17
ref|ZP_01497469.1| hypothetical protein YpseI_02002634 [Yer... 94 1e-17
gb|EAD68308.1| unknown [environmental sequence] 94 1e-17
ref|ZP_00720185.1| COG0582: Integrase [Escherichia coli F11... 93 3e-17
ref|ZP_01015128.1| putative P4-family integrase [Rhodobacte... 93 3e-17
ref|ZP_01054441.1| hypothetical protein MED193_17104 [Roseo... 92 6e-17
ref|ZP_00859179.1| putative phage integrase [Bradyrhizobium... 92 6e-17
ref|ZP_00812844.1| Phage integrase [Shewanella putrefaciens... 92 6e-17
gb|EAG77333.1| unknown [environmental sequence] 91 1e-16
gb|EAB91138.1| unknown [environmental sequence] 91 1e-16
gb|EAD55928.1| unknown [environmental sequence] 91 1e-16
ref|YP_985243.1| phage integrase family protein [Acidovorax... 91 1e-16
ref|YP_409955.1| putative integrase [Shigella boydii Sb227]... 91 1e-16
ref|YP_001021898.1| putative prophage integrase [Methylibiu... 91 1e-16
ref|YP_561335.1| phage integrase [Shewanella denitrificans ... 91 2e-16
ref|NP_232677.1| integrase, putative [Vibrio cholerae O1 bi... 91 2e-16
ref|YP_961735.1| phage integrase family protein [Shewanella... 91 2e-16
ref|ZP_00757701.1| COG0582: Integrase [Vibrio cholerae O395] 91 2e-16
ref|ZP_00133240.1| COG0582: Integrase [Haemophilus somnus 2... 91 2e-16
ref|ZP_01675613.1| integrase, truncation [Vibrio cholerae 2... 90 2e-16
ref|NP_936942.1| phage integrase [Vibrio vulnificus YJ016] ... 90 2e-16
ref|ZP_00826809.1| COG0582: Integrase [Yersinia mollaretii ... 90 2e-16
ref|ZP_01453398.1| integrative genetic element Gsu32, integ... 90 3e-16
ref|NP_897759.1| phage integrase family [Synechococcus sp. ... 90 3e-16
ref|ZP_01124706.1| phage integrase family protein [Synechoc... 90 3e-16
gb|EAC11129.1| unknown [environmental sequence] 89 4e-16
gb|EAJ00727.1| unknown [environmental sequence] 89 5e-16
ref|NP_106122.1| CP4-like integrase [Mesorhizobium loti MAF... 89 6e-16
ref|ZP_00976130.1| COG0582: Integrase [Pseudomonas aerugino... 89 6e-16
gb|EAK09623.1| unknown [environmental sequence] 88 8e-16
gb|EAF59266.1| unknown [environmental sequence] 88 8e-16
gb|EAB13071.1| unknown [environmental sequence] 88 8e-16
gb|EAF30555.1| unknown [environmental sequence] 88 1e-15
ref|ZP_01011628.1| site-specific recombinase, phage integra... 88 1e-15
ref|ZP_01494949.1| hypothetical protein YpseI_02000049 [Yer... 88 1e-15
ref|ZP_01377789.1| hypothetical protein Cjejd_01001449 [Cam... 87 1e-15
ref|YP_650295.1| integrase [Yersinia pestis Antiqua] >gi|10... 87 2e-15
ref|ZP_01216847.1| hypothetical protein PCNPT3_08535 [Psych... 87 2e-15
ref|YP_456045.1| putative phage integrase [Sodalis glossini... 87 2e-15
gb|EAG36469.1| unknown [environmental sequence] 87 2e-15
gb|AAW31848.1| IntB [Dichelobacter nodosus] 87 2e-15
ref|YP_178560.1| site-specific recombinase, phage integrase... 87 2e-15
ref|YP_963907.1| phage integrase family protein [Shewanella... 87 2e-15
ref|YP_385229.1| Phage integrase [Geobacter metallireducens... 86 3e-15
ref|NP_716026.1| site-specific recombinase, phage integrase... 86 3e-15
ref|ZP_01481779.1| hypothetical protein VchoR_02002316 [Vib... 86 3e-15
gb|EAB79895.1| unknown [environmental sequence] 86 4e-15
ref|ZP_00699709.1| COG0582: Integrase [Shigella boydii BS512] 86 4e-15
emb|CAG22424.1| hypothetical site-specific recombinase, pha... 86 5e-15
ref|YP_132224.2| integrase [Photobacterium profundum SS9] 86 5e-15
ref|YP_316433.1| hypothetical protein Tbd_2675 [Thiobacillu... 86 5e-15
ref|YP_353289.1| possible phage-related integrase [Rhodobac... 86 5e-15
gb|EAJ28408.1| unknown [environmental sequence] 85 9e-15
ref|ZP_01678980.1| integrase, putative [Vibrio cholerae 274... 85 9e-15
gb|EAU02042.1| site-specific recombinase, phage integrase f... 85 9e-15
ref|NP_718581.1| site-specific recombinase, phage integrase... 85 9e-15
ref|YP_871403.1| phage integrase family protein [Shewanella... 84 2e-14
gb|EAE00360.1| unknown [environmental sequence] 84 2e-14
ref|NP_519615.1| PUTATIVE INTEGRASE-LIKE PROTEIN [Ralstonia... 84 2e-14
ref|ZP_00833863.1| COG0582: Integrase [Yersinia intermedia ... 84 2e-14
ref|ZP_01484492.1| hypothetical protein VchoV5_02002924 [Vi... 84 2e-14
gb|EAF05458.1| unknown [environmental sequence] 83 3e-14
ref|ZP_01484171.1| hypothetical protein VchoV5_02003262 [Vi... 83 3e-14
ref|YP_794083.1| integrase [Stx2-converting bacteriophage 8... 83 3e-14
ref|YP_011072.1| integrase, truncation [Desulfovibrio vulga... 83 3e-14
ref|NP_463347.1| putative integrase [Salmonella typhimurium... 82 4e-14
ref|YP_132942.1| hypothetical phage integrase family [Photo... 82 4e-14
ref|NP_406162.1| integrase (partial) [Yersinia pestis CO92]... 82 4e-14
ref|ZP_00415308.1| Phage integrase [Azotobacter vinelandii ... 82 4e-14
gb|EAC94715.1| unknown [environmental sequence] 82 6e-14
ref|NP_760913.1| Integrase [Vibrio vulnificus CMCP6] >gi|27... 82 6e-14
ref|YP_892830.1| site-specific recombinase, phage integrase... 82 8e-14
ref|ZP_01262467.1| hypothetical protein V12G01_09547 [Vibri... 82 8e-14
gb|EAK55755.1| unknown [environmental sequence] 81 1e-13
ref|ZP_00952110.1| site-specific recombinase, phage integra... 81 1e-13
ref|ZP_00815167.1| Phage integrase [Shewanella putrefaciens... 81 1e-13
ref|ZP_01480856.1| hypothetical protein VchoR_02003300 [Vib... 81 1e-13
gb|EAG10579.1| unknown [environmental sequence] 80 2e-13
ref|YP_153344.1| hypothetical protein SPA4301 [Salmonella e... 80 2e-13
ref|NP_668538.1| hypothetical protein y1213 [Yersinia pesti... 80 2e-13
ref|YP_072342.1| putative phage integrase (partial) [Yersin... 80 2e-13
gb|EAG33047.1| unknown [environmental sequence] 80 3e-13
ref|ZP_00724835.1| COG0582: Integrase [Escherichia coli F11] 80 3e-13
gb|EAH12024.1| unknown [environmental sequence] 79 6e-13
ref|YP_356232.1| site-specific recombinase/integrase [Pelob... 79 6e-13
ref|ZP_01099361.1| site-specific recombinase, phage integra... 79 6e-13
ref|ZP_01042544.1| site-specific recombinase, phage integra... 79 6e-13
ref|ZP_01435639.1| phage integrase [Shewanella baltica OS19... 78 8e-13
ref|YP_318109.1| phage integrase [Nitrobacter winogradskyi ... 78 8e-13
ref|NP_953168.1| integrative genetic element Gsu56, integra... 78 8e-13
ref|YP_049774.1| integrase (partial) [Erwinia carotovora su... 78 8e-13
ref|YP_107779.1| putative phage integrase [Burkholderia pse... 78 1e-12
ref|ZP_01587650.1| phage integrase [Enterobacter sp. 638] >... 77 1e-12
ref|YP_024945.1| gp25 [Burkholderia cepacia complex phage B... 77 1e-12
ref|YP_065776.1| similar to integrase [Desulfotalea psychro... 77 1e-12
ref|YP_741903.1| phage integrase family protein [Alkalilimn... 77 1e-12
ref|ZP_00054261.1| COG0582: Integrase [Magnetospirillum mag... 77 1e-12
ref|ZP_01377988.1| hypothetical protein Cjejd_01001180 [Cam... 77 2e-12
gb|EAE96313.1| unknown [environmental sequence] 77 2e-12
gb|EAG35600.1| unknown [environmental sequence] 76 3e-12
ref|YP_285729.1| Phage integrase [Dechloromonas aromatica R... 76 3e-12
ref|YP_164918.1| site-specific recombinase, phage integrase... 76 3e-12
emb|CAA67164.1| intB [Dichelobacter nodosus] 76 3e-12
ref|ZP_01259872.1| Site-specific recombinase XerD-like prot... 76 4e-12
ref|YP_356237.1| site-specific recombinase/integrase [Pelob... 76 4e-12
gb|EAG28177.1| unknown [environmental sequence] 75 5e-12
gb|EAA80149.1| unknown [environmental sequence] 75 5e-12
gb|EAD94952.1| unknown [environmental sequence] 75 7e-12
gb|EAJ10879.1| unknown [environmental sequence] 75 9e-12
ref|YP_309845.1| putative integrase [Shigella sonnei Ss046]... 75 9e-12
ref|NP_719785.1| site-specific recombinase, phage integrase... 75 9e-12
gb|EAH08991.1| unknown [environmental sequence] 74 1e-11
gb|EAC56614.1| unknown [environmental sequence] 74 2e-11
ref|YP_668275.1| phage integrase [Escherichia coli 536] >gi... 74 2e-11
emb|CAD66211.1| putative phage integrase [Escherichia coli] 74 2e-11
ref|YP_369482.1| hypothetical protein Bcep18194_A5244 [Burk... 74 2e-11
gb|EAH49581.1| unknown [environmental sequence] 74 2e-11
gb|EAG48023.1| unknown [environmental sequence] 74 2e-11
ref|YP_901045.1| phage integrase family protein [Pelobacter... 74 2e-11
ref|ZP_01336291.1| hypothetical protein Bpse4_03001081 [Bur... 74 2e-11
ref|ZP_01103771.1| phage integrase [gamma proteobacterium K... 73 3e-11
ref|ZP_01042809.1| putative integrase [Idiomarina baltica O... 73 3e-11
gb|EAB16243.1| unknown [environmental sequence] 73 4e-11
ref|NP_744649.1| phage integrase, putative [Pseudomonas put... 73 4e-11
dbj|BAA20981.1| ORF [Escherichia coli] 72 5e-11
ref|ZP_01145507.1| putative integrase prophage protein [Aci... 72 5e-11
ref|YP_317448.1| Phage integrase [Nitrobacter winogradskyi ... 72 6e-11
ref|YP_750328.1| phage integrase family protein [Shewanella... 72 8e-11
gb|EAG83502.1| unknown [environmental sequence] 71 1e-10
ref|NP_668540.1| hypothetical protein y1215 [Yersinia pesti... 71 1e-10
ref|NP_406164.1| phage family integrase (partial) [Yersinia... 71 1e-10
ref|ZP_01157942.1| site-specific recombinase, phage integra... 71 1e-10
ref|ZP_00755126.1| COG0582: Integrase [Vibrio cholerae O395] 71 1e-10
ref|YP_719440.1| integrase [Haemophilus somnus 129PT] >gi|1... 71 1e-10
ref|ZP_01127006.1| symbiosis island integrase [Nitrococcus ... 71 1e-10
ref|ZP_01013781.1| Phage integrase [Rhodobacterales bacteri... 71 1e-10
ref|ZP_01478267.1| hypothetical protein VchoM_02002590 [Vib... 71 1e-10
gb|EAG40617.1| unknown [environmental sequence] 70 2e-10
gb|EAE12657.1| unknown [environmental sequence] 70 2e-10
gb|EAE79196.1| unknown [environmental sequence] 70 2e-10
ref|ZP_00922432.1| COG0582: Integrase [Shigella dysenteriae... 70 2e-10
gb|EAD61273.1| unknown [environmental sequence] 70 3e-10
emb|CAG24070.1| putative integrase [Proteus mirabilis] >gi|... 70 3e-10
dbj|BAC79050.1| integrase [Vibrio cholerae] 70 3e-10
ref|YP_736410.1| phage integrase family protein [Shewanella... 70 3e-10
ref|YP_957838.1| phage integrase family protein [Marinobact... 70 3e-10
ref|YP_836019.1| hypothetical protein Bcen2424_2376 [Burkho... 69 4e-10
emb|CAG24071.1| putative integrase [Shewanella putrefaciens] 69 4e-10
ref|ZP_00723973.1| COG0582: Integrase [Escherichia coli E11... 69 4e-10
ref|YP_621640.1| hypothetical protein Bcen_1764 [Burkholder... 69 4e-10
dbj|BAD16726.1| integrase [Vibrio fluvialis] >gi|77543200|g... 69 5e-10
ref|YP_962481.1| phage integrase family protein [Shewanella... 69 5e-10
gb|EAB27784.1| unknown [environmental sequence] 69 7e-10
gb|AAK07490.1| integrase [IncJ plasmid R391] >gi|20095222|g... 69 7e-10
ref|YP_199693.1| Integrase [Xanthomonas oryzae pv. oryzae K... 69 7e-10
ref|NP_287321.1| putative integrase of prophage CP-933C [Es... 69 7e-10
ref|NP_309601.1| putative integrase [Escherichia coli O157:... 69 7e-10
gb|EAG74698.1| unknown [environmental sequence] 68 9e-10
ref|YP_689502.1| putative integrase of prophage [Shigella f... 68 9e-10
ref|YP_559728.1| Putative phage integrase [Burkholderia xen... 68 9e-10
emb|CAG24068.1| putative integrase [Providencia rettgeri] 68 9e-10
dbj|BAC22654.1| probable integrase [Comamonas sp. NCIMB 9872] 68 9e-10
ref|YP_903214.1| phage integrase family protein [Pelobacter... 68 9e-10
ref|YP_688661.1| putative integrase of prophage [Shigella f... 68 1e-09
ref|YP_511173.1| phage integrase [Jannaschia sp. CCS1] >gi|... 68 1e-09
ref|YP_158428.1| phage-related integrase, fragmentary gene ... 68 1e-09
ref|ZP_00713451.1| COG0582: Integrase [Escherichia coli E11... 68 1e-09
emb|CAG24069.1| putative integrase [Proteus vulgaris] 67 1e-09
gb|EAB72742.1| unknown [environmental sequence] 67 3e-09
ref|YP_157763.1| hypothetical protein ebA1360 [Azoarcus sp.... 67 3e-09
ref|ZP_00990859.1| Site-specific recombinase XerD-like [Vib... 66 3e-09
ref|ZP_00718832.1| COG0582: Integrase [Escherichia coli E11... 66 3e-09
ref|ZP_00591910.1| putative integrase prophage protein [Pro... 66 4e-09
ref|ZP_01311263.1| phage integrase [Desulfuromonas acetoxid... 66 4e-09
ref|ZP_01503035.1| prophage PSPPH01, site-specific recombin... 65 6e-09
ref|YP_449983.1| hypothetical protein XOO_0954 [Xanthomonas... 65 6e-09
gb|EAJ24705.1| unknown [environmental sequence] 65 7e-09
ref|ZP_01292090.1| Phage integrase [delta proteobacterium M... 65 7e-09
ref|ZP_00999266.1| Putative P4-family integrase [Oceanicola... 65 7e-09
gb|EAC78557.1| unknown [environmental sequence] 65 1e-08
ref|YP_486913.1| Phage integrase [Rhodopseudomonas palustri... 65 1e-08
gb|EAH67493.1| unknown [environmental sequence] 64 1e-08
gb|EAH31934.1| unknown [environmental sequence] 64 1e-08
gb|EAH00933.1| unknown [environmental sequence] 64 1e-08
gb|EAG68717.1| unknown [environmental sequence] 64 1e-08
ref|YP_129903.1| hypothetical protein PBPRA1694 [Photobacte... 64 1e-08
gb|EAJ51175.1| unknown [environmental sequence] 64 2e-08
ref|ZP_01004499.1| putative phage integrase [Loktanella ves... 64 2e-08
gb|AAG37058.1|AF297061_16 unknown [Escherichia coli] 64 2e-08
ref|ZP_01058392.1| Phage integrase [Roseobacter sp. MED193]... 64 2e-08
ref|ZP_01380278.1| hypothetical protein RbelO_01001076 [Ric... 63 3e-08
ref|YP_537610.1| Integrase [Rickettsia bellii RML369-C] >gi... 63 3e-08
gb|EAG50164.1| unknown [environmental sequence] 63 4e-08
gb|EAB83878.1| unknown [environmental sequence] 63 4e-08
ref|ZP_01583656.1| phage integrase family protein [Dinorose... 63 4e-08
sp|P06155|VINT_BPPH8 Integrase 63 4e-08
emb|CAA27683.1| unnamed protein product [Bacteriophage phi-... 63 4e-08
ref|ZP_00728690.1| COG0582: Integrase [Escherichia coli E22] 63 4e-08
ref|YP_369880.1| Phage integrase [Burkholderia sp. 383] >gi... 62 5e-08
gb|EAB04490.1| unknown [environmental sequence] 61 1e-07
emb|CAE30338.1| putative integrase [Shewanella putrefaciens] 61 1e-07
ref|ZP_01017052.1| Phage integrase [Parvularcula bermudensi... 61 1e-07
ref|YP_660255.1| phage integrase [Pseudoalteromonas atlanti... 61 1e-07
ref|YP_556394.1| putative phage integrase [Burkholderia xen... 60 2e-07
gb|EAA91107.1| unknown [environmental sequence] 60 3e-07
ref|ZP_01047683.1| Phage integrase [Nitrobacter sp. Nb-311A... 60 3e-07
ref|ZP_00899999.1| phage integrase, putative [Pseudomonas p... 60 3e-07
ref|YP_583391.1| phage integrase [Ralstonia metallidurans C... 60 3e-07
ref|ZP_01513657.1| phage integrase [Burkholderia phytofirma... 59 4e-07
ref|NP_783538.1| hypothetical prophage Sf6-like integrase [... 59 4e-07
ref|YP_001001918.1| phage integrase family protein [Halorho... 59 4e-07
ref|ZP_00797434.1| COG0582: Integrase [Yersinia pestis Ango... 59 4e-07
ref|ZP_01017021.1| Phage integrase [Parvularcula bermudensi... 59 5e-07
ref|YP_369941.1| hypothetical protein Bcep18194_A5703 [Burk... 59 7e-07
ref|NP_746019.1| phage integrase, putative [Pseudomonas put... 59 7e-07
ref|YP_497483.1| phage integrase [Novosphingobium aromatici... 58 9e-07
ref|YP_217494.1| site-specific recombinase, phage integrase... 58 9e-07
ref|ZP_01047462.1| possible phage-related integrase [Nitrob... 58 9e-07
ref|ZP_00702628.1| COG0582: Integrase [Escherichia coli E24... 58 9e-07
ref|ZP_00053692.1| COG0582: Integrase [Magnetospirillum mag... 58 9e-07
gb|EAE18694.1| unknown [environmental sequence] 58 1e-06
ref|ZP_01421555.1| Phage integrase [Caulobacter sp. K31] >g... 58 1e-06
ref|YP_510842.1| phage integrase [Jannaschia sp. CCS1] >gi|... 58 1e-06
ref|ZP_00991386.1| Phage integrase [Vibrio splendidus 12B01... 58 1e-06
ref|YP_782900.1| phage integrase family protein [Rhodopseud... 58 1e-06
ref|YP_926199.1| hypothetical protein Sama_0318 [Shewanella... 58 1e-06
gb|EAF94671.1| unknown [environmental sequence] 57 2e-06
gb|EAB90972.1| unknown [environmental sequence] 57 2e-06
ref|NP_707882.1| putative integrase [Shigella flexneri 2a s... 57 2e-06
ref|YP_150455.1| integrase [Salmonella enterica subsp. ente... 57 2e-06
ref|NP_836195.1| IntA [Shigella flexneri 2a str. 2457T] >gi... 57 2e-06
ref|NP_949418.1| possible phage-like integrase [Rhodopseudo... 57 2e-06
ref|NP_455803.1| integrase (fragment) [Salmonella enterica ... 57 2e-06
ref|YP_676338.1| phage integrase [Mesorhizobium sp. BNC1] >... 57 2e-06
gb|EAG24220.1| unknown [environmental sequence] 57 3e-06
ref|ZP_01289843.1| Phage integrase [delta proteobacterium M... 57 3e-06
ref|YP_533717.1| phage integrase [Rhodopseudomonas palustri... 57 3e-06
ref|ZP_00210006.1| COG0582: Integrase [Magnetospirillum mag... 57 3e-06
ref|YP_617575.1| phage integrase [Sphingopyxis alaskensis R... 56 3e-06
ref|ZP_00628993.1| Phage integrase [Paracoccus denitrifican... 56 3e-06
gb|EAE73159.1| unknown [environmental sequence] 56 4e-06
gb|EAA97208.1| unknown [environmental sequence] 56 4e-06
ref|ZP_01670482.1| phage integrase family protein [Anaeromy... 56 4e-06
ref|ZP_00813440.1| Phage integrase [Shewanella putrefaciens... 56 4e-06
ref|YP_206470.1| hypothetical protein VFA0512 [Vibrio fisch... 55 6e-06
ref|YP_217628.1| Gifsy-1 prophage Int [Salmonella enterica ... 55 6e-06
emb|CAE30340.1| putative integrase [Proteus mirabilis] 55 6e-06
gb|EAF89441.1| unknown [environmental sequence] 55 8e-06
ref|YP_495537.1| phage integrase [Novosphingobium aromatici... 55 8e-06
ref|NP_106936.1| symbiosis island integrase [Mesorhizobium ... 55 8e-06
gb|EAK39166.1| unknown [environmental sequence] 55 1e-05
gb|EAC75869.1| unknown [environmental sequence] 55 1e-05
gb|EAB48450.1| unknown [environmental sequence] 55 1e-05
ref|ZP_01199983.1| hypothetical protein XautDRAFT_0766 [Xan... 55 1e-05
gb|EAG62077.1| unknown [environmental sequence] 54 1e-05
ref|YP_617177.1| hypothetical protein Sala_2135 [Sphingopyx... 54 1e-05
ref|YP_975050.1| putative phage integrase [Neisseria mening... 54 2e-05
ref|YP_113156.1| site-specific recombinase, phage integrase... 54 2e-05
ref|YP_050272.1| prophage integrase (partial) [Erwinia caro... 54 2e-05
ref|NP_283985.1| phage integrase [Neisseria meningitidis Z2... 54 2e-05
ref|NP_244418.1| integrase (phage-related protein) [Bacillu... 54 2e-05
gb|EAG01346.1| unknown [environmental sequence] 54 2e-05
ref|YP_868885.1| phage integrase family protein [Shewanella... 54 2e-05
ref|NP_935009.1| phage family integrase [Vibrio vulnificus ... 53 3e-05
gb|EAH92397.1| unknown [environmental sequence] 52 5e-05
gb|EAC17525.1| unknown [environmental sequence] 52 5e-05
ref|ZP_01102601.1| phage integrase [gamma proteobacterium K... 52 5e-05
ref|ZP_00862592.1| site-specific recombinase, phage integra... 52 5e-05
gb|EAK42889.1| unknown [environmental sequence] 52 6e-05
gb|EAA93448.1| unknown [environmental sequence] 52 6e-05
ref|YP_987171.1| phage integrase family protein [Acidovorax... 52 6e-05
ref|NP_743712.1| phage integrase, putative [Pseudomonas put... 52 6e-05
ref|NP_520743.1| PROBABLE INTEGRASE PROTEIN [Ralstonia sola... 52 6e-05
gb|EAF84095.1| unknown [environmental sequence] 52 8e-05
gb|EAB79091.1| unknown [environmental sequence] 52 8e-05
ref|YP_901802.1| phage integrase family protein [Pelobacter... 52 8e-05
ref|ZP_00204662.1| COG0582: Integrase [Haemophilus somnus 2... 52 8e-05
ref|ZP_00416466.1| Phage integrase [Azotobacter vinelandii ... 52 8e-05
ref|YP_548166.1| phage integrase [Polaromonas sp. JS666] >g... 51 1e-04
ref|ZP_01103579.1| prophage integrase [gamma proteobacteriu... 51 1e-04
ref|ZP_01039258.1| site-specific recombinase, phage integra... 51 1e-04
ref|ZP_01477718.1| hypothetical protein VchoM_02003164 [Vib... 51 1e-04
gb|EAJ34091.1| unknown [environmental sequence] 51 1e-04
gb|EAG59684.1| unknown [environmental sequence] 51 1e-04
emb|CAL97194.1| phage integrase [Lactococcus lactis subsp. ... 51 1e-04
ref|YP_611816.1| phage integrase [Silicibacter sp. TM1040] ... 51 1e-04
gb|EAD01017.1| unknown [environmental sequence] 50 2e-04
ref|ZP_01616907.1| integrative genetic element Gsu32, integ... 50 2e-04
gb|EAE56884.1| unknown [environmental sequence] 50 2e-04
ref|ZP_01434492.1| hypothetical protein Sbal195DRAFT_2146 [... 50 2e-04
ref|ZP_01289825.1| Phage integrase [delta proteobacterium M... 50 2e-04
emb|CAD61108.1| putative site specific recombinase [Cupriav... 50 2e-04
emb|CAA71790.1| putative integrase [Cupriavidus necator] 50 2e-04
ref|ZP_01004578.1| Phage integrase [Loktanella vestfoldensi... 50 2e-04
ref|ZP_01044910.1| probable integrase protein [Nitrobacter ... 50 3e-04
gb|EAG95271.1| unknown [environmental sequence] 49 4e-04
gb|EAG31605.1| unknown [environmental sequence] 49 4e-04
gb|EAK25278.1| unknown [environmental sequence] 49 5e-04
ref|YP_216992.1| putative P4-type integrase [Salmonella ent... 49 5e-04
gb|EAF18381.1| unknown [environmental sequence] 49 7e-04
gb|EAA82535.1| unknown [environmental sequence] 49 7e-04
ref|YP_095118.1| phage related integrase [Legionella pneumo... 49 7e-04
ref|YP_125443.1| hypothetical protein lpl0065 [Legionella p... 49 7e-04
gb|EAI76379.1| unknown [environmental sequence] 48 0.001
ref|YP_126439.1| hypothetical protein lpl1085 [Legionella p... 48 0.001
gb|EAH82281.1| unknown [environmental sequence] 48 0.001
gb|EAE37152.1| unknown [environmental sequence] 48 0.001
ref|ZP_01580157.1| phage integrase [Delftia acidovorans SPH... 48 0.001
ref|ZP_01506196.1| phage integrase [Burkholderia phymatum S... 48 0.001
ref|YP_790663.1| putative integrase [Pseudomonas aeruginosa... 48 0.001
ref|ZP_01004604.1| Site-specific recombinase XerD-like [Lok... 48 0.001
ref|ZP_00629023.1| Phage integrase [Paracoccus denitrifican... 48 0.001
ref|ZP_01443592.1| putative integrase dna protein [Roseovar... 47 0.002
ref|YP_969047.1| phage integrase family protein [Acidovorax... 47 0.002
ref|YP_986858.1| phage integrase family protein [Acidovorax... 47 0.002
ref|NP_934570.1| integrase [Vibrio vulnificus YJ016] >gi|37... 47 0.002
ref|ZP_01004592.1| Phage integrase [Loktanella vestfoldensi... 47 0.002
ref|ZP_00975085.1| COG0582: Integrase [Pseudomonas aerugino... 47 0.002
gb|EAH35725.1| unknown [environmental sequence] 47 0.002
ref|ZP_01641040.1| phage integrase [Pseudomonas putida W619... 47 0.002
ref|ZP_01513656.1| hypothetical protein BphytDRAFT_7303 [Bu... 47 0.002
ref|YP_998457.1| putative integrase protein [Verminephrobac... 47 0.002
ref|YP_457707.1| site-specific recombinase, phage integrase... 47 0.002
ref|ZP_01056028.1| site-specific recombinase, phage integra... 47 0.002
ref|ZP_01039373.1| hypothetical protein NAP1_03690 [Erythro... 47 0.002
ref|NP_761299.1| Integrase [Vibrio vulnificus CMCP6] >gi|27... 47 0.003
gb|ABD14561.1| Int [Enterococcus faecium] 47 0.003
gb|EAC79216.1| unknown [environmental sequence] 46 0.004
gb|EAF86186.1| unknown [environmental sequence] 46 0.004
ref|NP_642539.1| phage-related integrase [Xanthomonas axono... 46 0.004
ref|YP_047895.1| hypothetical protein ACIAD3414 [Acinetobac... 46 0.004
gb|EAI30763.1| unknown [environmental sequence] 46 0.005
gb|EAF09048.1| unknown [environmental sequence] 46 0.005
ref|YP_234315.1| hypothetical protein Psyr_1226 [Pseudomona... 46 0.005
ref|ZP_01199436.1| probable integrase protein [Xanthobacter... 46 0.005
ref|ZP_00828126.1| hypothetical protein YfreA_01003677 [Yer... 46 0.005
ref|ZP_01292868.1| hypothetical protein PaerP_01005263 [Pse... 45 0.006
ref|YP_318712.1| integrase [Nitrobacter winogradskyi Nb-255... 45 0.006
ref|YP_454609.1| phage integrase [Sodalis glossinidius str.... 45 0.006
ref|ZP_00718833.1| COG0582: Integrase [Escherichia coli E11... 45 0.006
ref|YP_998898.1| hypothetical protein Veis_4175 [Verminephr... 45 0.008
ref|NP_644092.1| integrase [Xanthomonas axonopodis pv. citr... 45 0.008
gb|EAC48898.1| unknown [environmental sequence] 45 0.010
ref|YP_670600.1| hypothetical protein ECP_2710 [Escherichia... 45 0.010
ref|ZP_00787270.1| site-specific recombinase, phage integra... 45 0.010
ref|ZP_01476783.1| hypothetical protein VEx2w_02000517 [Vib... 45 0.010
ref|ZP_00725698.1| COG0582: Integrase [Escherichia coli F11] 45 0.010
ref|YP_620727.1| phage integrase [Burkholderia cenocepacia ... 45 0.010
gb|EAJ33425.1| unknown [environmental sequence] 44 0.014
gb|EAD23696.1| unknown [environmental sequence] 44 0.014
gb|AAF12706.1|AF066865_4 integrase [bacteriophage TPW22] 44 0.014
ref|ZP_01561569.1| phage integrase [Burkholderia cenocepaci... 44 0.018
ref|YP_941865.1| phage integrase family protein [Psychromon... 44 0.018
ref|YP_163665.1| integrase [Zymomonas mobilis subsp. mobili... 44 0.018
ref|NP_840329.1| Phage integrase [Nitrosomonas europaea ATC... 44 0.018
ref|ZP_01311269.1| phage integrase [Desulfuromonas acetoxid... 44 0.018
ref|ZP_00051459.1| COG0582: Integrase [Magnetospirillum mag... 44 0.018
ref|ZP_00603285.1| Phage integrase [Enterococcus faecium DO... 44 0.018
gb|EAH94951.1| unknown [environmental sequence] 44 0.023
gb|EAF95081.1| unknown [environmental sequence] 44 0.023
ref|YP_693784.1| shufflon-specific DNA recombinase [Alcaniv... 44 0.023
ref|YP_585186.1| phage integrase [Ralstonia metallidurans C... 44 0.023
ref|NP_421479.1| integrase/recombinase, phage integrase fam... 43 0.030
ref|NP_773857.1| probable site-specific integrase/recombina... 43 0.030
ref|ZP_01135053.1| phage integrase, putative [Pseudoalterom... 43 0.030
ref|ZP_00133448.1| COG0582: Integrase [Haemophilus somnus 2... 43 0.039
ref|NP_734681.1| hypothetical protein gbs0211 [Streptococcu... 43 0.039
emb|CAL98709.1| phage integrase [Lactococcus lactis subsp. ... 42 0.051
emb|CAL98456.1| IntTn5276 protein [Lactococcus lactis subsp... 42 0.051
ref|ZP_01594738.1| phage integrase [Geobacter lovleyi SZ] >... 42 0.051
ref|YP_495588.1| phage integrase [Novosphingobium aromatici... 42 0.051
ref|YP_421087.1| Integrase [Magnetospirillum magneticum AMB... 42 0.051
gb|EAH26760.1| unknown [environmental sequence] 42 0.067
ref|ZP_01564780.1| hypothetical protein Bcenmc03DRAFT_4890 ... 42 0.067
ref|YP_808331.1| Integrase [Lactococcus lactis subsp. cremo... 42 0.067
ref|NP_936913.1| phage integrase [Vibrio vulnificus YJ016] ... 42 0.067
ref|ZP_00875936.1| Phage integrase [Streptococcus suis 89/1... 42 0.067
ref|YP_811732.1| Integrase [Lactococcus lactis subsp. cremo... 42 0.067
ref|NP_743689.1| phage integrase, putative [Pseudomonas put... 42 0.088
ref|NP_345599.1| integrase/recombinase, phage integrase fam... 42 0.088
dbj|BAA75916.1| similar to integrase [Pseudomonas putida] 42 0.088
ref|ZP_00733780.1| COG0582: Integrase [Escherichia coli 53638] 42 0.088
>ref|ZP_00726102.1| COG0582: Integrase [Escherichia coli F11]
Length = 420
Score = 821 bits (2120), Expect = 0.0
Identities = 406/420 (96%), Positives = 411/420 (97%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP DKQY LTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT
Sbjct: 1 MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEW+GTNKKWSEDHAHRV
Sbjct: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
Sbjct: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWA ELTLLIFIRSS
Sbjct: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLS QALAILKQIKQF
Sbjct: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRD
Sbjct: 301 CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSHM RNSVRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPF+YAKINNPLK
Sbjct: 361 AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK 420
>ref|YP_672358.1| prophage P4 integrase [Escherichia coli 536]
gb|ABG72457.1| prophage P4 integrase [Escherichia coli 536]
Length = 420
Score = 820 bits (2118), Expect = 0.0
Identities = 406/420 (96%), Positives = 411/420 (97%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP DKQY LTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT
Sbjct: 1 MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEW+GTNKKWSEDHAHRV
Sbjct: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
Sbjct: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWA ELTLLIFIRSS
Sbjct: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLS QALAILKQIKQF
Sbjct: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
GAHDLIFIG+HDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRD
Sbjct: 301 CGAHDLIFIGNHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSHM RNSVRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK 420
>ref|YP_543812.1| prophage P4 integrase [Escherichia coli UTI89]
gb|ABE10281.1| prophage P4 integrase [Escherichia coli UTI89]
Length = 420
Score = 818 bits (2112), Expect = 0.0
Identities = 405/420 (96%), Positives = 410/420 (97%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP DKQY LTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT
Sbjct: 1 MALTDLKVRTAKPADKQYKLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LADARVRRDEARKLLANGV PGDKKKNDKVEQSKARTFKEVAIEW+GTNKKWSEDHAHRV
Sbjct: 61 LADARVRRDEARKLLANGVAPGDKKKNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
Sbjct: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWA ELTLLIFIRSS
Sbjct: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLS QALAILKQIKQF
Sbjct: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQF 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRD
Sbjct: 301 CGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSHM RNSVRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPF+YAKINNPLK
Sbjct: 361 AVERQMSHMERNSVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFDYAKINNPLK 420
>ref|NP_418691.1| KpLE2 phage-like element; predicted integrase [Escherichia coli
K12]
ref|AP_004766.1| predicted integrase [Escherichia coli W3110]
sp|P39347|INTB_ECOLI Prophage P4 integrase (Int(P4))
gb|AAA97167.1| ORF_o396 [Escherichia coli]
gb|AAC77227.1| KpLE2 phage-like element; predicted integrase [Escherichia coli
K12]
dbj|BAE78267.1| predicted integrase [Escherichia coli W3110]
Length = 396
Score = 800 bits (2065), Expect = 0.0
Identities = 396/396 (100%), Positives = 396/396 (100%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK
Sbjct: 1 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60
Query: 86 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 145
KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL
Sbjct: 61 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 120
Query: 146 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 205
LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE
Sbjct: 121 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 180
Query: 206 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 265
LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP
Sbjct: 181 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 240
Query: 266 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS
Sbjct: 241 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 300
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL
Sbjct: 301 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 360
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ 421
EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ
Sbjct: 361 EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ 396
>emb|CAD42017.1| bacteriophage P4 integrase [Escherichia coli]
Length = 395
Score = 777 bits (2007), Expect = 0.0
Identities = 385/395 (97%), Positives = 389/395 (98%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK
Sbjct: 1 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 60
Query: 86 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 145
KNDKVEQSKARTFKEVAIEW+GTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL
Sbjct: 61 KNDKVEQSKARTFKEVAIEWYGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 120
Query: 146 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 205
LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE
Sbjct: 121 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 180
Query: 206 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 265
LKRIPELLTKIDSYTGRPLTRWA ELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP
Sbjct: 181 LKRIPELLTKIDSYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 240
Query: 266 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
IPGVKHSHRGSKMRTTHLVPLS QALAILKQIKQF GAHDLIFIG+HDSHKPMSENTVNS
Sbjct: 241 IPGVKHSHRGSKMRTTHLVPLSRQALAILKQIKQFCGAHDLIFIGNHDSHKPMSENTVNS 300
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRDAVERQMSHM RNSVRAAYIHKAEHL
Sbjct: 301 ALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMERNSVRAAYIHKAEHL 360
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
EERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 EERRLMLQWWADFLDANREKGISPFEYAKINNPLK 395
>ref|ZP_01588664.1| phage integrase [Enterobacter sp. 638]
gb|EAV85083.1| phage integrase [Enterobacter sp. 638]
Length = 420
Score = 749 bits (1933), Expect = 0.0
Identities = 364/416 (87%), Positives = 390/416 (93%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKVR AKPTDKQY LTD GMHLLVHPNGS+YWRLQYR+ GKQKMLALGVYP+++
Sbjct: 1 MALTDIKVRTAKPTDKQYKLTDSNGMHLLVHPNGSRYWRLQYRFGGKQKMLALGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LADAR RRDEARKLLAN +DPGDKKKNDKVEQ +ARTF+++A+EWH TNKKWSE+H+ RV
Sbjct: 61 LADARARRDEARKLLANSIDPGDKKKNDKVEQEEARTFEQLAVEWHATNKKWSEEHSRRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLEDNLF A+G+RNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL
Sbjct: 121 LKSLEDNLFPAIGKRNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQEMAGAVAS NRQHRPALELKRIPELL KIDSYTGRPLTRWA ELTLLIFIRSS
Sbjct: 181 IDYNPAQEMAGAVASSNRQHRPALELKRIPELLEKIDSYTGRPLTRWATELTLLIFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDFE S+WTIPPEREPIPGVKHSHRGSKMRT HLVPLS QAL IL+QIK F
Sbjct: 241 ELRFARWSEIDFETSMWTIPPEREPIPGVKHSHRGSKMRTPHLVPLSKQALEILRQIKHF 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G ++LIFIGDHD KPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWS+D
Sbjct: 301 CGEYELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
AVERQMSHM RNSVRAAYIHKAEHL+ER+LMLQWWADFLD NRE+ I+PF+YAKIN
Sbjct: 361 AVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKIN 416
>ref|ZP_00729795.1| COG0582: Integrase [Escherichia coli E22]
Length = 394
Score = 681 bits (1757), Expect = 0.0
Identities = 332/394 (84%), Positives = 362/394 (91%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKVR AKPTDKQY LTDG GMHLLVHPNGSKYWRLQYR+ GKQKMLALGVYP+++
Sbjct: 1 MALTDIKVRTAKPTDKQYKLTDGNGMHLLVHPNGSKYWRLQYRFGGKQKMLALGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LADAR RRD+ARKLLANG+DPGDKKKNDK+EQ +ARTF+++AIEWH TNKKWSE+H+ RV
Sbjct: 61 LADARARRDDARKLLANGIDPGDKKKNDKIEQEEARTFEQLAIEWHATNKKWSEEHSRRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLEDNLF A+G+RNIA+LKTRDLLAPIKAVE+SGRLEVA+RLQQRTTAIMRYAVQSGL
Sbjct: 121 LKSLEDNLFPAIGKRNIADLKTRDLLAPIKAVELSGRLEVASRLQQRTTAIMRYAVQSGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
+DYNPAQEM GAVAS NRQHRPAL+LK IPELL +IDSYTGRPLTR A+ELTLL+FIRSS
Sbjct: 181 LDYNPAQEMVGAVASNNRQHRPALQLKLIPELLRRIDSYTGRPLTRLAVELTLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDFE S+WTIP ERE I GVKHS RGSKMRT HLVPLS QALAILK + +
Sbjct: 241 ELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSHQALAILKDVYKL 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G D +FIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRD
Sbjct: 301 SGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQW 394
AVERQMSHM R+SVRAAYIHKAEHL+ERRLMLQW
Sbjct: 361 AVERQMSHMERSSVRAAYIHKAEHLDERRLMLQW 394
>ref|ZP_00699371.1| COG0582: Integrase [Shigella boydii BS512]
Length = 422
Score = 678 bits (1750), Expect = 0.0
Identities = 335/417 (80%), Positives = 371/417 (88%), Gaps = 1/417 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD KVR+AKP +K+Y L DG GM LLV P GSKYWR ++R+ GKQ ++A GVYP+++
Sbjct: 1 MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR-TFKEVAIEWHGTNKKWSEDHAHR 119
LADAR +R+EARKL+A G+DP + K+ K EQ+K TF++VA EW TN+KWSE+HA+R
Sbjct: 61 LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEEHANR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
V KSLEDN+F A+G NIAEL TRDLL PIKAVE SGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VKKSLEDNIFPAIGSHNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVASCNRQHRPALELKRIPELL KID YTGRPLTRWA ELTLLIFIRS
Sbjct: 181 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDFE S+WTIPPEREPIPGVKHS RG+KMRT HLVPLS QALAILKQIKQ
Sbjct: 241 SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQ 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
F G H+LIFIGDHD KPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWS+
Sbjct: 301 FCGEHELIFIGDHDPSKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DAVERQMSHM RNSVRAAYIHKAEHL+ER+LMLQWWADFLD NRE+ I+PF+YAKIN
Sbjct: 361 DAVERQMSHMERNSVRAAYIHKAEHLDERKLMLQWWADFLDANREKGITPFDYAKIN 417
>ref|ZP_00714759.1| COG0582: Integrase [Escherichia coli B7A]
Length = 422
Score = 659 bits (1700), Expect = 0.0
Identities = 325/422 (77%), Positives = 367/422 (86%), Gaps = 1/422 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD KVR+AKP +K+Y L DG GM LL+HPNGSKYWR ++R+ GKQ ++A GVYPE +
Sbjct: 1 MALTDTKVRSAKPQEKEYTLVDGDGMFLLIHPNGSKYWRFRFRFGGKQHLMAFGVYPETS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR +R+EAR+L+A G+DP + K+ K EQ+K A TF+ VA EWH TNKKWSE+H+ R
Sbjct: 61 LADARQKREEARRLVAAGIDPREHKRAVKEEQAKEAITFESVAREWHATNKKWSEEHSRR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF+A+G R+I ELKTRDLLAPIK VE +GR EVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFSAIGRRSIEELKTRDLLAPIKIVEATGRFEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVAS NR HRPALELKR+PELL +ID YTGRPLTR A+ELTLLIFIRS
Sbjct: 181 LIDYNPAQEMAGAVASSNRVHRPALELKRLPELLHRIDGYTGRPLTRLAVELTLLIFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF+ ++WTIP ERE I GVKHS RGSKMRT HLVPLS QALAILKQ+ +
Sbjct: 241 SELRFARWSEIDFDTAMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSHQALAILKQVHK 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G D +FIGDHD KPMSENTVN ALRVMGYDT+VEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 LSGERDFVFIGDHDPRKPMSENTVNKALRVMGYDTRVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPL 419
DAVERQMSHM RNSVRAAYIHKAEHL+ERRLMLQWWADFLDVNRE+ ISPF++AKI L
Sbjct: 361 DAVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWWADFLDVNREKVISPFDFAKIFASL 420
Query: 420 KQ 421
K+
Sbjct: 421 KR 422
>ref|ZP_00821097.1| COG0582: Integrase [Yersinia bercovieri ATCC 43970]
Length = 419
Score = 657 bits (1695), Expect = 0.0
Identities = 325/416 (78%), Positives = 366/416 (87%), Gaps = 1/416 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPEI+
Sbjct: 1 MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 61 LADARARRDEARKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIA+L TRDLL PIKAVEMSGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVA+ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++WT+P EREP+ GVKHSHRGSKMRT HLVPLS QALAIL++IK
Sbjct: 241 SELRFARWSEVDFETAMWTLPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILQKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKI 415
DAVERQMSH RNSVRAAYIHKAEHL+ERRLM+QWWAD+LD NRE+ +SPF++AK+
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKL 416
>ref|NP_668085.1| prophage P4 integrase [Yersinia pestis KIM]
ref|NP_992037.1| integrase [Yersinia pestis biovar Microtus str. 91001]
gb|AAM84336.1|AE013677_1 putative prophage P4 integrase [Yersinia pestis KIM]
gb|AAS60914.1| integrase [Yersinia pestis biovar Microtus str. 91001]
Length = 431
Score = 657 bits (1694), Expect = 0.0
Identities = 323/417 (77%), Positives = 367/417 (88%), Gaps = 1/417 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP K Y LTDG GM LLVHPNGSKYWRL+YR++GK+KMLALG YPEI+
Sbjct: 13 MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS 72
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARK LANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 73 LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 132
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIA+L TRDLL PIKAVEM+GRL+VA+RLQQRTTAIMRYAVQSG
Sbjct: 133 VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG 192
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVA+ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 193 LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 252
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++WTIP EREP+ GVKHSHRGSKMRT HL+PLS QALAIL++IK
Sbjct: 253 SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS 312
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 313 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 372
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DAVERQMSH RNSVRAAYIHKAEHL+ERRLM+QWWAD+LD NRE+ +SPF++AK+N
Sbjct: 373 DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLN 429
>ref|NP_406899.1| integrase [Yersinia pestis CO92]
ref|ZP_01175133.1| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275]
ref|YP_652846.1| integrase [Yersinia pestis Antiqua]
ref|YP_646583.1| integrase [Yersinia pestis Nepal516]
gb|ABG16983.1| integrase [Yersinia pestis Nepal516]
gb|ABG14901.1| integrase [Yersinia pestis Antiqua]
emb|CAL22027.1| integrase [Yersinia pestis CO92]
Length = 419
Score = 657 bits (1694), Expect = 0.0
Identities = 323/417 (77%), Positives = 367/417 (88%), Gaps = 1/417 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP K Y LTDG GM LLVHPNGSKYWRL+YR++GK+KMLALG YPEI+
Sbjct: 1 MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARK LANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 61 LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIA+L TRDLL PIKAVEM+GRL+VA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVA+ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++WTIP EREP+ GVKHSHRGSKMRT HL+PLS QALAIL++IK
Sbjct: 241 SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DAVERQMSH RNSVRAAYIHKAEHL+ERRLM+QWWAD+LD NRE+ +SPF++AK+N
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLN 417
>ref|ZP_00797005.1| COG0582: Integrase [Yersinia pestis Angola]
Length = 419
Score = 655 bits (1691), Expect = 0.0
Identities = 322/417 (77%), Positives = 367/417 (88%), Gaps = 1/417 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP K Y LTDG GM LLVHPNGSKYWRL+YR++GK+KMLALG YPEI+
Sbjct: 1 MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARK LANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 61 LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIA+L TRDLL PIKAVEM+GRL+VA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMAGRLQVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAV++ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEMAGAVSTGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++WTIP EREP+ GVKHSHRGSKMRT HL+PLS QALAIL++IK
Sbjct: 241 SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLIPLSRQALAILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DAVERQMSH RNSVRAAYIHKAEHL+ERRLM+QWWAD+LD NRE+ +SPF++AK+N
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLDERRLMIQWWADYLDANREKGVSPFDFAKLN 417
>ref|ZP_00829619.1| COG0582: Integrase [Yersinia frederiksenii ATCC 33641]
Length = 418
Score = 654 bits (1688), Expect = 0.0
Identities = 320/416 (76%), Positives = 367/416 (88%), Gaps = 1/416 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP +K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPE++
Sbjct: 1 MALSDVKVRTAKPEEKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRD+ARK LANG++P + KK KVEQ + A TF+ VA +WH +N+KWSE H+ R
Sbjct: 61 LADARARRDDARKQLANGMNPSESKKAVKVEQEQEAITFEVVARDWHASNQKWSESHSGR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+R+IAELKTRDLL PIKAVEMSGRLEVAARLQQRTTAIMR+AVQSG
Sbjct: 121 VLKSLEDNLFDAIGKRSIAELKTRDLLTPIKAVEMSGRLEVAARLQQRTTAIMRFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID+YTGRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDTYTGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARW E+DFE ++WTIP ER+P+ GVKHSHRGSKMRT HLVPLS QALAIL++IK
Sbjct: 241 SELRFARWPEVDFETAMWTIPGERDPLEGVKHSHRGSKMRTPHLVPLSQQALAILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIF+GDHD KPMSENTVN +LRVMGYDTKVEVCGHGFRTMACSSL+ESGLWS+
Sbjct: 301 MSGNRELIFVGDHDPRKPMSENTVNKSLRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKI 415
DAVERQMSH RNSVRAAYIHKAEHL ERRLM+QWWAD+LD NRE+ +SPF++AK+
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLGERRLMVQWWADYLDANREKGVSPFDFAKL 416
>ref|ZP_00834004.1| COG0582: Integrase [Yersinia intermedia ATCC 29909]
Length = 417
Score = 654 bits (1686), Expect = 0.0
Identities = 324/415 (78%), Positives = 364/415 (87%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR AKP K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPEI+
Sbjct: 1 MALSDVKVRTAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 61 LADARARRDEARKLLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIA+L TRDLL PIKAVEMSGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFQAIGKRNIADLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVA+ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++W+IP EREP+ GVKHSHRGSKMRT HLVPLS QALAIL++IK
Sbjct: 241 SELRFARWSEVDFETAMWSIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILQKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWS+
Sbjct: 301 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RNSVRAAYIHKAEHL+ERRLMLQWWAD+LD NRE+ +SPF++ K
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLDERRLMLQWWADYLDANREKGVSPFDFGK 415
>ref|YP_410419.1| prophage P4 integrase [Shigella boydii Sb227]
gb|ABB68591.1| prophage P4 integrase [Shigella boydii Sb227]
Length = 397
Score = 640 bits (1651), Expect = 0.0
Identities = 317/392 (80%), Positives = 350/392 (89%), Gaps = 1/392 (0%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
M LLV P GSKYWR ++R+ GKQ ++A GVYP+++LADAR +R+EARKL+A G+DP + K
Sbjct: 1 MSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVSLADARKKREEARKLVAAGIDPREHK 60
Query: 86 KNDKVEQSKAR-TFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRD 144
+ K EQ+K TF++VA EW TN+KWSE+HA+RV KSLEDN+F A+G NIAEL TRD
Sbjct: 61 RAVKEEQAKEIITFEKVAREWLVTNQKWSEEHANRVKKSLEDNIFPAIGSHNIAELGTRD 120
Query: 145 LLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPAL 204
LL PIKAVE SGRLEVA+RLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVAS NRQHRPAL
Sbjct: 121 LLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASSNRQHRPAL 180
Query: 205 ELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPERE 264
ELKRIPELL KID YTGRPLTRWA ELTLLIFIRSSELRFARWSEIDFE S+WTIPPERE
Sbjct: 181 ELKRIPELLQKIDEYTGRPLTRWATELTLLIFIRSSELRFARWSEIDFETSMWTIPPERE 240
Query: 265 PIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVN 324
PIPGVKHS RG+KMRT HLVPLS QALAILKQIKQF G H+LIFIGDHD KPMSENTVN
Sbjct: 241 PIPGVKHSQRGAKMRTPHLVPLSKQALAILKQIKQFCGEHELIFIGDHDPSKPMSENTVN 300
Query: 325 SALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEH 384
SALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWS+DAVERQMSHM RNSVRAAYIHKAEH
Sbjct: 301 SALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSKDAVERQMSHMERNSVRAAYIHKAEH 360
Query: 385 LEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
L+ER+LMLQWWADFLD NRE+ I+PF+YAKIN
Sbjct: 361 LDERKLMLQWWADFLDANREKGITPFDYAKIN 392
>ref|ZP_01498036.1| hypothetical protein YpseI_02003210 [Yersinia pseudotuberculosis IP
31758]
Length = 411
Score = 632 bits (1631), Expect = e-180
Identities = 312/399 (78%), Positives = 352/399 (88%), Gaps = 1/399 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR+AKP +K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG+YPEI+
Sbjct: 1 MALSDVKVRSAKPEEKAYKLTDGDGMVLLVHPNGSKYWRLRYRFGGKEKMLALGIYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARK LANGVDP + KK KVEQ + A TF+ VA EWH +N++WSE H+ R
Sbjct: 61 LADARARRDEARKQLANGVDPSESKKAVKVEQEQEAITFEVVAREWHASNRQWSEAHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF ++G+RNI +L TRDLL PIKAVEMSGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VLKSLEDNLFQSIGKRNITDLGTRDLLPPIKAVEMSGRLEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVA+ R+HR ALEL R+ ELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEMAGAVATGKRKHRAALELNRVSELLHRIDYYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSE+DFE ++WTIP EREP+ GVKHSHRGSKMRT HLVPLS QALAIL++IK
Sbjct: 241 SELRFARWSEVDFETAMWTIPGEREPLEGVKHSHRGSKMRTPHLVPLSRQALAILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIFIGDHD KPMSENTVN ALRVMGYDTKV+VCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFIGDHDPRKPMSENTVNKALRVMGYDTKVDVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADF 398
DAVERQMSH RNSVRAAYIHKAEHL+ER+LM+QWWADF
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLDERKLMIQWWADF 399
>ref|YP_691515.1| putative P4-type integrase [Shigella flexneri 5 str. 8401]
gb|ABF06210.1| putative P4-type integrase [Shigella flexneri 5 str. 8401]
Length = 397
Score = 615 bits (1586), Expect = e-174
Identities = 308/394 (78%), Positives = 344/394 (87%), Gaps = 1/394 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR+AKP K Y LTDG GM LLVHPNGSKYWRL+YR++GK+KMLALG YPE++
Sbjct: 1 MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFDGKEKMLALGKYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA +WH +N+KWS H+ R
Sbjct: 61 LADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIAELKTRDLL PIKAVE SGRLEVAARLQQRTTAIMR+AVQSG
Sbjct: 121 VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDFE ++WTIP ERE + GVKHS RGSKMRT HLVPLS QAL+IL++IK
Sbjct: 241 SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIF+GDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQ 393
DAVERQMSH R+SVRAAYIHKAEHL ERRLM +
Sbjct: 361 DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE 394
>ref|NP_839619.1| putative P4-type integrase [Shigella flexneri 2a str. 2457T]
ref|NP_709936.2| putative P4-type integrase [Shigella flexneri 2a str. 301]
gb|AAP19431.1| putative P4-type integrase [Shigella flexneri 2a str. 2457T]
gb|AAN45643.2| putative P4-type integrase [Shigella flexneri 2a str. 301]
Length = 403
Score = 613 bits (1582), Expect = e-174
Identities = 308/394 (78%), Positives = 343/394 (87%), Gaps = 1/394 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR+AKP K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPE++
Sbjct: 1 MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA +WH +N+KWS H+ R
Sbjct: 61 LADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIAELKTRDLL PIKAVE SGRLEVAARLQQRTTAIMR+AVQSG
Sbjct: 121 VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDFE ++WTIP ERE + GVKHS RGSKMRT HLVPLS QAL+IL++IK
Sbjct: 241 SELRFARWSEIDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +LIF+GDHD KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 MSGNRELIFVGDHDPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQ 393
DAVERQMSH R+SVRAAYIHKAEHL ERRLM +
Sbjct: 361 DAVERQMSHQERSSVRAAYIHKAEHLGERRLMFE 394
>ref|YP_050970.1| integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
emb|CAG75779.1| integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
Length = 417
Score = 608 bits (1569), Expect = e-172
Identities = 299/415 (72%), Positives = 342/415 (82%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKVR+AKP +K Y LTDG GM LLVH NGSKYWRL+YR +GK+K LALGVYPE++
Sbjct: 1 MALTDIKVRSAKPEEKPYKLTDGNGMFLLVHTNGSKYWRLRYRSDGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
L++AR +RDEARKL++ GVDP + KK K +Q +TF+ VA WH NKKWSE HA R
Sbjct: 61 LSEARQKRDEARKLISAGVDPNEHKKAVKTQQQDDEQTFEAVARAWHTDNKKWSESHAER 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
+LKSL DN+F A+G ++A LKTRDLL PIK+VE SGRLEVA RL+QR TAIM YAVQ+G
Sbjct: 121 ILKSLSDNIFPAIGGTHVANLKTRDLLTPIKSVERSGRLEVAKRLKQRVTAIMTYAVQNG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQ+MAGA+ +HRPALEL R+PELL +ID Y GR T+W I L+LLIFIRS
Sbjct: 181 LIDYNPAQDMAGAIMPGKVEHRPALELDRLPELLGRIDGYKGREFTKWVINLSLLIFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARW EIDFE S+WTIPPEREPIPGVK S RGSKM T HLVPLS QAL ILK+I++
Sbjct: 241 SELRFARWPEIDFERSLWTIPPEREPIPGVKFSERGSKMHTPHLVPLSRQALEILKKIRE 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +L+FIGDH S KP+SE TVN AL+ MGYDTK EVCGHGFRTMACSSL+ESGLWSR
Sbjct: 301 VSGHCELVFIGDHSSRKPVSEGTVNKALQTMGYDTKTEVCGHGFRTMACSSLIESGLWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RN VRAAYIHKAEHL+ERRLMLQWWADFLD NRER IS F++AK
Sbjct: 361 DAVERQMSHQERNGVRAAYIHKAEHLDERRLMLQWWADFLDANRERAISAFDFAK 415
>gb|EAI62000.1| unknown [environmental sequence]
Length = 417
Score = 599 bits (1544), Expect = e-169
Identities = 289/417 (69%), Positives = 344/417 (82%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKP +K Y L D G M LLVHPNGS+YWRL+YR+ GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPDEKPYKLADSGNMFLLVHPNGSRYWRLRYRFLGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RD ARKL+A G DP ++K+ K A+TF+ +A +WH +NKKWS H R+
Sbjct: 61 LSEAREKRDTARKLIAEGTDPCEQKRIKKSVPETAQTFEGIARQWHKSNKKWSASHNERI 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L+T DLL P+KA E E+AARLQQR TAIMRYA QSG+
Sbjct: 121 LKSLETHVFPFIGSRDITTLRTPDLLVPVKAAEAKEIYEIAARLQQRITAIMRYAAQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL L RI ELL ++D+Y G+PLTR A +LTLLIFIRSS
Sbjct: 181 ITYNPALDMAGALTTVKRQHRPALALNRISELLERLDAYRGQPLTRQATKLTLLIFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSEIDF+ ++WTIPPER+PI GVK+SHRGSKMRT HLVPLSTQA+ ILKQI
Sbjct: 241 ELRFARWSEIDFKKAMWTIPPERKPIEGVKYSHRGSKMRTEHLVPLSTQAVNILKQIHTI 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G H+LIF GDH+ KPMSENTVN+ALR+MGYDTKV+VCGHGFR MACSSL+ESGLWSRD
Sbjct: 301 SGEHELIFTGDHNPWKPMSENTVNNALRLMGYDTKVDVCGHGFRAMACSSLIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINN 417
AVERQMSHM RN+VRAAYIHKAEHL+ER+LMLQWWADFLD NRE+ +SPF+YAKINN
Sbjct: 361 AVERQMSHMERNTVRAAYIHKAEHLDERKLMLQWWADFLDANREQSVSPFDYAKINN 417
>gb|AAK16198.1| Int [Escherichia coli]
Length = 421
Score = 599 bits (1544), Expect = e-169
Identities = 286/421 (67%), Positives = 345/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL L R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTREVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
Query: 421 Q 421
Q
Sbjct: 421 Q 421
>ref|ZP_00725099.1| COG0582: Integrase [Escherichia coli F11]
ref|YP_670846.1| putative P4-type integrase [Escherichia coli 536]
emb|CAE85151.1| CP4 integrase protein [Escherichia coli]
gb|ABG70945.1| putative P4-type integrase [Escherichia coli 536]
Length = 421
Score = 596 bits (1537), Expect = e-169
Identities = 284/420 (67%), Positives = 344/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL L R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGS+MRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSRMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
>gb|AAL51003.1|AF453829_1 CP4-like integrase [Escherichia coli]
Length = 421
Score = 596 bits (1536), Expect = e-169
Identities = 284/421 (67%), Positives = 346/421 (82%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I+SY G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP ER+P+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
A ERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
Query: 421 Q 421
Q
Sbjct: 421 Q 421
>ref|ZP_00700958.1| COG0582: Integrase [Escherichia coli E24377A]
Length = 420
Score = 596 bits (1536), Expect = e-169
Identities = 283/420 (67%), Positives = 344/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LL+HPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLIHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL L R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+FISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK 420
>ref|ZP_00708295.1| COG0582: Integrase [Escherichia coli B171]
ref|ZP_00710033.1| COG0582: Integrase [Escherichia coli B171]
ref|ZP_00712435.1| COG0582: Integrase [Escherichia coli B171]
ref|ZP_00727879.1| COG0582: Integrase [Escherichia coli E22]
gb|AAL51028.1|AF454555_1 CP4-like integrase [Escherichia coli]
gb|AAL57571.1|AF453441_55 CP4-like integrase [Escherichia coli]
gb|AAL60261.1|AF461394_1 Int-phe [Escherichia coli]
Length = 421
Score = 595 bits (1535), Expect = e-168
Identities = 284/421 (67%), Positives = 345/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT +VCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
Query: 421 Q 421
Q
Sbjct: 421 Q 421
>gb|AAT48697.1| CP4-like integrase [Escherichia coli]
Length = 421
Score = 595 bits (1533), Expect = e-168
Identities = 284/421 (67%), Positives = 345/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL L R+PELL++I+SY G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALNLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP ER+P+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTREVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
A ERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AGERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
Query: 421 Q 421
Q
Sbjct: 421 Q 421
>ref|NP_708738.1| putative P4-type integrase [Shigella flexneri 2a str. 301]
ref|NP_838459.1| putative P4-type integrase [Shigella flexneri 2a str. 2457T]
gb|AAN44445.1| putative P4-type integrase [Shigella flexneri 2a str. 301]
gb|AAP18269.1| putative P4-type integrase [Shigella flexneri 2a str. 2457T]
Length = 420
Score = 594 bits (1532), Expect = e-168
Identities = 284/420 (67%), Positives = 343/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPALEL R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALELSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + S+WTIP EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNSMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK 420
>emb|CAJ87566.1| integrase [Escherichia coli]
Length = 420
Score = 593 bits (1530), Expect = e-168
Identities = 283/420 (67%), Positives = 345/420 (82%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++IDSY G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDSYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP ER+P+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSKQAVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKINNPLK 420
>gb|EAY46246.1| phage integrase family protein [Escherichia coli B]
Length = 421
Score = 593 bits (1528), Expect = e-168
Identities = 282/420 (67%), Positives = 345/420 (82%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L+T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLRTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVTLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALR MGYDT +VCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRGMGYDTTQDVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+FISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKFISPFEYAKINNPLK 420
>ref|NP_755431.1| Prophage P4 integrase [Escherichia coli CFT073]
gb|AAN82004.1|AE016766_92 Prophage P4 integrase [Escherichia coli CFT073]
Length = 421
Score = 593 bits (1528), Expect = e-168
Identities = 282/421 (66%), Positives = 346/421 (82%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E+ E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I+SY G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRINSYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP ER+P+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAERKPLPGVKFSHRGSKMRTPHLVPLSQQAVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE ISPFEYAK+NNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK 420
Query: 421 Q 421
+
Sbjct: 421 R 421
>ref|YP_859807.1| Int (Putative P4-type integrase) [Escherichia coli APEC O1]
gb|ABJ03683.1| Int (Putative P4-type integrase) [Escherichia coli APEC O1]
Length = 421
Score = 592 bits (1527), Expect = e-167
Identities = 282/421 (66%), Positives = 345/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E+ E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK S+RGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE ISPFEYAK+NNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREECISPFEYAKVNNPLK 420
Query: 421 Q 421
+
Sbjct: 421 R 421
>ref|NP_757064.1| Prophage P4 integrase [Escherichia coli CFT073]
gb|AAN83638.1|AE016771_149 Prophage P4 integrase [Escherichia coli CFT073]
Length = 420
Score = 592 bits (1526), Expect = e-167
Identities = 283/420 (67%), Positives = 344/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK 420
>ref|NP_289539.1| putative pathogenicity island integrase [Escherichia coli O157:H7
EDL933]
ref|NP_311870.1| integrase [Escherichia coli O157:H7 str. Sakai]
gb|AAG58098.1|AE005527_1 putative pathogenicity island integrase [Escherichia coli O157:H7
EDL933]
dbj|BAB37266.1| integrase [Escherichia coli O157:H7 str. Sakai]
Length = 421
Score = 592 bits (1526), Expect = e-167
Identities = 283/421 (67%), Positives = 344/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LAL VYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALVVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS Q +AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT +VCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRERFISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRERFISPFEYAKINNPLK 420
Query: 421 Q 421
Q
Sbjct: 421 Q 421
>ref|YP_854214.1| putative P4-like integrase [Escherichia coli APEC O1]
gb|AAZ04412.1| phage integrase [Escherichia coli]
gb|ABJ02393.1| putative P4-like integrase [Escherichia coli APEC O1]
Length = 420
Score = 591 bits (1524), Expect = e-167
Identities = 282/420 (67%), Positives = 344/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ G+DP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGIDPCEQKRVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRISSYKGQPVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREKGISPFEYAKINNPLK 420
>gb|EAY49697.1| phage integrase family protein [Escherichia coli B]
Length = 420
Score = 590 bits (1520), Expect = e-167
Identities = 282/420 (67%), Positives = 343/420 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++ID Y G P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGLPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK S+RGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT +VCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANREQCISPFEYAKINNPLK 420
>emb|CAE55749.1| Int (Putative P4-type integrase) [Escherichia coli Nissle 1917]
Length = 421
Score = 590 bits (1520), Expect = e-167
Identities = 281/421 (66%), Positives = 344/421 (81%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E+ E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLSTPDLLIPVRAAEVKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++ID Y G+P+TR A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK S+RGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSYRGSKMRTPHLVPLSQQAVAILAELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 AGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTKEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
AVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFLD NR ISPFEYAK+NNPLK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLDANRGECISPFEYAKVNNPLK 420
Query: 421 Q 421
+
Sbjct: 421 R 421
>ref|ZP_01495624.1| hypothetical protein YpseI_02000740 [Yersinia pseudotuberculosis IP
31758]
Length = 419
Score = 576 bits (1484), Expect = e-162
Identities = 279/414 (67%), Positives = 332/414 (80%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR+AK DK Y LTD GMHLLVHPNGSKYWRL+YRY GK+ LALGVYP ++
Sbjct: 1 MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPALS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RD ARKL+A G DP + K+ K +TF+ +A WH NK+WSE H+ +V
Sbjct: 61 LSEARAKRDAARKLIAEGSDPSEVKRAKKALPDATQTFEVIARRWHAANKQWSEQHSAKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LK+LE LF G R+IA L+T DLL PI+ E +G LEV+ARL QRTTAIMRYAVQ G+
Sbjct: 121 LKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQCGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQ+M GA+ + R HRPALEL RIPELL++I+ Y G+PLTR A+ L L +FIRSS
Sbjct: 181 IDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID E ++WTIP EREPIPGVK SHRGSKMRTTHLVPLS Q+LA+L++++
Sbjct: 241 ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLS 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G LIF GDHD KP+SENT+N ALR+MGY+TK EVCGHGFR MACS+L+ESGLWSRD
Sbjct: 301 GGESGLIFPGDHDPRKPISENTINKALRLMGYETKTEVCGHGFRAMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
AVERQMSH RN VRAAYIHKAE L+ERRLMLQWWADFLD NRE +SPF++AK
Sbjct: 361 AVERQMSHQERNGVRAAYIHKAEFLDERRLMLQWWADFLDTNREIAVSPFDFAK 414
>ref|NP_757219.1| Prophage P4 integrase [Escherichia coli CFT073]
gb|AAN83793.1|AE016771_304 Prophage P4 integrase [Escherichia coli CFT073]
Length = 383
Score = 565 bits (1455), Expect = e-159
Identities = 283/357 (79%), Positives = 311/357 (87%), Gaps = 1/357 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD KVR+AKP +K+Y L DG GM LLV P GSKYWR ++R+ GKQ ++A GVYP+++
Sbjct: 27 MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS 86
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR-TFKEVAIEWHGTNKKWSEDHAHR 119
LADAR +R+EARKL+ G+DP + K+ K EQ+K TF++VA EW TN+KWSEDHA+R
Sbjct: 87 LADARKKREEARKLVTAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR 146
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
V KSLEDN+F +G RNIAEL TRDLL PIKAVE SGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 147 VKKSLEDNIFPTIGARNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG 206
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQEMAGAVAS NRQHRPALELKRIPELL KID YTGRPLTRWA ELTLLIFIRS
Sbjct: 207 LIDYNPAQEMAGAVASSNRQHRPALELKRIPELLQKIDDYTGRPLTRWATELTLLIFIRS 266
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDFE S+WTIPPEREPIPGVKHS RGSKMRT HLVP S QALAILKQIKQ
Sbjct: 267 SELRFARWSEIDFETSMWTIPPEREPIPGVKHSQRGSKMRTPHLVPFSKQALAILKQIKQ 326
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL 356
F G H+LIFIGDHD KPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL+ESGL
Sbjct: 327 FCGEHELIFIGDHDPRKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLIESGL 383
>emb|CAC81896.1| integrase [Escherichia coli]
Length = 396
Score = 555 bits (1431), Expect = e-156
Identities = 264/396 (66%), Positives = 324/396 (81%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
M LLVHPNGS+YWRL+YR GK+K LALGVYPE++L++AR +RDEARKL++ GVDP ++K
Sbjct: 1 MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGVDPCEQK 60
Query: 86 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 145
+ KV +F+ +A WH +NK+W++ H+ +VLKSLE ++F +G R+I L T DL
Sbjct: 61 RAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL 120
Query: 146 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 205
L P++A E E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+ + RQHRPAL+
Sbjct: 121 LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALD 180
Query: 206 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 265
L R+PELL++I SY G+P+T+ A+ L LL+FIRSSELR+ARWSEID + ++WTIP EREP
Sbjct: 181 LSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSSELRYARWSEIDIDNAMWTIPAEREP 240
Query: 266 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
+PGVK SHRGSKMRT HLVPLS Q +AIL +++ + G + LIF G HD KP+SENTVN
Sbjct: 241 LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK 300
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALRVMGYDT +VCGHGFR MACS+L+ESGLWSRDAVERQMSH RN VRAAYIHKAEHL
Sbjct: 301 ALRVMGYDTTQDVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL 360
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYAKINNPLKQ 421
EERRLMLQWWADFLD NRERFISPFEYAKINNPLKQ
Sbjct: 361 EERRLMLQWWADFLDANRERFISPFEYAKINNPLKQ 396
>ref|ZP_01587481.1| phage integrase [Enterobacter sp. 638]
gb|EAV86341.1| phage integrase [Enterobacter sp. 638]
Length = 416
Score = 555 bits (1429), Expect = e-156
Identities = 264/413 (63%), Positives = 331/413 (80%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP DK LTDG GMHLLV P+GSKYWRLQYR+ GKQKMLALGVYPE++
Sbjct: 1 MALTDVKVRNAKPADKPVKLTDGNGMHLLVQPSGSKYWRLQYRFSGKQKMLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR RR+EAR+L+AN VDPG+K+K K+E+ F+ VA +WH +N+ WS+ H V
Sbjct: 61 LSEARRRREEARQLIANNVDPGEKRKTKKIEEKGLLIFETVARDWHSSNRTWSDSHRKTV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL ++F +G+RNI ELKTRDLL P+K E +G LE+AARLQQR TAIMRYAV + L
Sbjct: 121 LSSLITHVFPVIGKRNITELKTRDLLVPLKKAEATGHLELAARLQQRITAIMRYAVHNAL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
+D NPA ++ GAV + HRPAL L+++PELL +I +Y G+ +T+ A++LTLL FIRSS
Sbjct: 181 VDQNPAYDLTGAVTTAKSNHRPALPLEQLPELLKRIGTYKGKGITQIAVQLTLLTFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSE++F+ S+WTIP ER+ + GVK+S RGSKM+T HLVPLS QA+ +LK++
Sbjct: 241 ELRFARWSEVNFKNSLWTIPAERQVLDGVKYSGRGSKMKTPHLVPLSKQAVVLLKKLHAI 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G ++L+F+G KP+SENTVN ALR MGYDTK +VCGHGFRTMACS+L+ESGLWSRD
Sbjct: 301 SGENELMFVGFSRDDKPISENTVNKALRTMGYDTKKDVCGHGFRTMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYA 413
AVE+QMSH RNSVRAAYIHKAEHLEER+LMLQWWA++LD +E I+PF YA
Sbjct: 361 AVEKQMSHQERNSVRAAYIHKAEHLEERKLMLQWWANYLDTCKEEAITPFTYA 413
>gb|AAK00456.1| Int [Shigella flexneri 2a]
Length = 395
Score = 554 bits (1428), Expect = e-156
Identities = 264/395 (66%), Positives = 322/395 (81%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
M LLVHPNGS+YWRL+YR GK+K LALGVYPE++L++AR +RDEARKL++ G+DP ++K
Sbjct: 1 MFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVSLSEARTKRDEARKLISEGIDPCEQK 60
Query: 86 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 145
+ KV +F+ +A WH +NK+W++ H+ +VLKSLE ++F +G R+I L T DL
Sbjct: 61 RVKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKVLKSLETHVFPFIGNRDITTLNTPDL 120
Query: 146 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 205
L P++A E E+A+RLQQR +A+MRYAVQSG+I YNPA +MAGA+ + RQHRPALE
Sbjct: 121 LIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGIIRYNPALDMAGALTTVKRQHRPALE 180
Query: 206 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 265
L R+PELL++ID Y G+P+TR A+ L LL+FIRSSELR+ARWSEID + S+WTIP EREP
Sbjct: 181 LSRLPELLSRIDGYKGQPVTRLAVMLNLLVFIRSSELRYARWSEIDIDNSMWTIPAEREP 240
Query: 266 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
+PGVK SHRGSKMRT HLVPLS Q +AIL +++ + G + LIF G HD KP+SENTVN
Sbjct: 241 LPGVKFSHRGSKMRTPHLVPLSKQVVAILAELQTWAGENGLIFTGAHDPRKPISENTVNK 300
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALRVMGYDT EVCGHGFR MACS+L+ESGLWSRDAVERQMSH RN VRAAYIHKAEHL
Sbjct: 301 ALRVMGYDTTQEVCGHGFRAMACSALIESGLWSRDAVERQMSHQERNGVRAAYIHKAEHL 360
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYAKINNPLK 420
EERRLMLQWWADFLD NRE+ ISPFEYAKINNPLK
Sbjct: 361 EERRLMLQWWADFLDANREKGISPFEYAKINNPLK 395
>ref|ZP_00834521.1| COG0582: Integrase [Yersinia intermedia ATCC 29909]
Length = 418
Score = 553 bits (1426), Expect = e-156
Identities = 266/412 (64%), Positives = 331/412 (80%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALT++KVR AKP +K LTDGGGMHLL+ P+GSKYWRLQYR+ GKQKMLALGVYPEI+
Sbjct: 1 MALTEVKVRNAKPAEKPVKLTDGGGMHLLIQPSGSKYWRLQYRFAGKQKMLALGVYPEIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LA AR+RRDEARKL+AN +DP +K+K++KVE+ TF+ VA +WH +N+ WS+ H V
Sbjct: 61 LATARLRRDEARKLIANNIDPSEKRKSEKVEEKGLLTFETVARDWHSSNRTWSDSHRTTV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +LF +G+RNI ELKTRDLL P+K E SG LEVA+RLQQR TAIMRYAV + L
Sbjct: 121 LNSLITHLFPVIGKRNITELKTRDLLLPLKNAEKSGHLEVASRLQQRITAIMRYAVHNAL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
ID NPA +++GAV + HRPAL +++PELL +I++Y G+ +T+ A++LTLL FIRSS
Sbjct: 181 IDQNPAYDLSGAVTTPKSTHRPALPFEQLPELLRRIEAYKGKGITQIAVQLTLLTFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARWSE++FE S+WTIP ER+ + GVK+S RGSKM+ HLVPLS QA +L+++
Sbjct: 241 ELRFARWSEVNFENSLWTIPGERQELDGVKYSGRGSKMKNPHLVPLSKQAKTLLEKLHSI 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
G +L+FIG KP+SENTVN ALR +GYDTK EVCGHGFRTMACS+L+ESGLWSRD
Sbjct: 301 SGDKELMFIGFSRDDKPISENTVNKALRTIGYDTKKEVCGHGFRTMACSALIESGLWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEY 412
AVERQMSH RNSVRAAYIHKAEHLEER+LMLQWWAD+L+ E+ ++PF +
Sbjct: 361 AVERQMSHQERNSVRAAYIHKAEHLEERKLMLQWWADYLEACEEKELTPFSF 412
>gb|AAK16076.1|AF288080_3 IntB [Photorhabdus luminescens]
Length = 417
Score = 539 bits (1388), Expect = e-151
Identities = 256/414 (61%), Positives = 331/414 (79%), Gaps = 1/414 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD++ RAAKP +K+Y LTD G++LL+ PNGSK W L+YR+ GK+ +ALG YP++T
Sbjct: 1 MPLTDMEARAAKPREKEYKLTDVQGLYLLIKPNGSKRWYLKYRFAGKESRIALGAYPQVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ-SKARTFKEVAIEWHGTNKKWSEDHAHR 119
L AR +RD + ++ NG++P K++ +K E ++ TF++VA +WH +NK+WS H+ R
Sbjct: 61 LGKAREQRDSIKIMIRNGINPSKKREVEKQEAIAETLTFEKVARDWHSSNKRWSTTHSER 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VL L N+F A+G ++IA L+ +DLLAP+K +E SGRLE+A+R QQR TAIMRYAVQ+G
Sbjct: 121 VLGDLRRNVFPAIGNKSIATLEVKDLLAPLKEIESSGRLELASRQQQRITAIMRYAVQNG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LI NPAQ++ GA+A+ HRPAL L+++P+ LT+++ Y GR LT A+ LTL IFIRS
Sbjct: 181 LIARNPAQDLKGALATRKSTHRPALPLEKLPDFLTRLEHYKGRHLTILAVRLTLYIFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARW E+D + ++WTIP EREPI GVKHSHRGSKMRT HLVPLS QAL +LKQIK+
Sbjct: 241 SELRFARWREVDLDKALWTIPAEREPIDGVKHSHRGSKMRTVHLVPLSHQALELLKQIKK 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPMSENT+N+ALR MGYDTK EVCGHGFR MACS+LVESGLWS+
Sbjct: 301 LSGDNELIFPGDHNPNKPMSENTINAALRTMGYDTKTEVCGHGFRAMACSALVESGLWSK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYA 413
DAVERQMSH RNSVRAAYIHKAEHL+ER+LM+QWWAD+LD R+ FI P+E++
Sbjct: 361 DAVERQMSHQERNSVRAAYIHKAEHLKERKLMVQWWADYLDQCRKEFIDPYEFS 414
>gb|AAB95339.1| putative integrase [Enterobacter aerogenes]
Length = 344
Score = 538 bits (1387), Expect = e-151
Identities = 266/343 (77%), Positives = 297/343 (86%), Gaps = 1/343 (0%)
Query: 73 KLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAA 131
KL+A G+DP + K+ K EQ+K A TF+ VA EWH NKKW+E+H+ RVLKSLEDNLF A
Sbjct: 1 KLVAAGIDPREHKRAVKEEQTKGAITFESVAREWHAANKKWTEEHSRRVLKSLEDNLFPA 60
Query: 132 LGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAG 191
+G+R+I TRDLL PIK VE +GRLEVA+RLQQRT AIMRYAVQSGLIDYNPAQEMAG
Sbjct: 61 IGKRSIDSFSTRDLLVPIKVVEATGRLEVASRLQQRTNAIMRYAVQSGLIDYNPAQEMAG 120
Query: 192 AVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEID 251
AVAS NR HRPALELKR+PELL +IDSY+GRPLTR A+ELTLLIFIRSSELRFARW EID
Sbjct: 121 AVASSNRVHRPALELKRLPELLQRIDSYSGRPLTRLAVELTLLIFIRSSELRFARWPEID 180
Query: 252 FEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGD 311
FE ++WTIP ERE I GVKHS RGSKMRT HLVPLS QAL ILKQ+ +F G D +F+GD
Sbjct: 181 FERAMWTIPAEREAIEGVKHSQRGSKMRTPHLVPLSRQALEILKQVHKFSGERDFVFVGD 240
Query: 312 HDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMAR 371
H+ KPMSENTVN ALRVMGYDTKVEVCGHGFRTMACSSL+ESGLWSRDAVERQMSHM R
Sbjct: 241 HNPRKPMSENTVNKALRVMGYDTKVEVCGHGFRTMACSSLIESGLWSRDAVERQMSHMER 300
Query: 372 NSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
NSVRAAYIHKAEHL+ER+LMLQWWADFLD NR++ ISPF+YAK
Sbjct: 301 NSVRAAYIHKAEHLDERKLMLQWWADFLDANRQKGISPFDYAK 343
>ref|NP_931643.1| hypothetical protein plu4477 [Photorhabdus luminescens subsp.
laumondii TTO1]
emb|CAE16849.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 418
Score = 526 bits (1355), Expect = e-148
Identities = 254/415 (61%), Positives = 325/415 (78%), Gaps = 3/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+ R AKP ++ Y L D G++L++ P GSK W L+YR+EGK+ +A G YP I+
Sbjct: 1 MALTDVVARTAKPREQAYKLADAHGLYLMISPGGSKRWYLKYRFEGKESRIAFGAYPLIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR-TFKEVAIEWHG--TNKKWSEDHA 117
LA AR +RDE R LLA+G++P +K+ K E A TF++VA +WH + +WSE HA
Sbjct: 61 LAKAREKRDEVRLLLADGINPAEKRGEGKKEAQDALITFEKVARDWHRNISQNRWSETHA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
RV + +E N+ A+G R+IA+LKT+DLL P+KAVE +G L++A+RL+QR T IMRYAVQ
Sbjct: 121 GRVWRDMERNILPAIGHRHIADLKTKDLLEPLKAVEQNGHLDLASRLRQRVTDIMRYAVQ 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+ LI+ NPAQ+++GA+A HRPAL+L ++P+ L +I++Y GR LT A++ TL +FI
Sbjct: 181 NDLIERNPAQDLSGAIAPPKATHRPALKLDKLPDFLARIENYKGRTLTTLALKFTLCVFI 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
RSSELRFARW+EIDF+ ++WTIP ERE IPGVKHS RG+KMRT HLVPLS QALA+LK+I
Sbjct: 241 RSSELRFARWTEIDFKRAMWTIPAEREAIPGVKHSQRGAKMRTEHLVPLSRQALALLKEI 300
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G H+LIF GD KPMSENTVN+ALRVMGYDT E+CGHGFRTMACS+LVESG W
Sbjct: 301 QAISGGHELIFPGDRRPTKPMSENTVNNALRVMGYDTTTELCGHGFRTMACSALVESGQW 360
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEY 412
SRDAVERQMSH R+SVRAAYIHKAEH+EERRLMLQWWAD+LD NRE ++ P+E+
Sbjct: 361 SRDAVERQMSHQERDSVRAAYIHKAEHIEERRLMLQWWADYLDANREGYVVPYEF 415
>ref|ZP_00824745.1| COG0582: Integrase [Yersinia mollaretii ATCC 43969]
Length = 413
Score = 517 bits (1332), Expect = e-145
Identities = 242/412 (58%), Positives = 317/412 (76%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+ +R AKP K Y LTD G++L + P G K W L++R +GK+ +A G YP ++
Sbjct: 1 MALTDMAIRNAKPRTKAYKLTDAQGLYLQIQPGGGKLWYLKFRVDGKESRIAFGGYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L AR RD+A+ L+A G+ P ++++ +K TF+ VA +WH +NKKWS H+ RV
Sbjct: 61 LGQARAERDKAKALIAQGISPTNRREQEKEIIQNTHTFELVARDWHASNKKWSVQHSERV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L+ E LF A+G+RNI ELK RDLL P++ VE +G+L+VAARLQQR T +MRYAVQ+GL
Sbjct: 121 LRYFEMYLFPAIGKRNIDELKIRDLLTPLRVVEQTGKLDVAARLQQRITCVMRYAVQNGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I+YNPAQ++AGA+ + HR AL L+R+PELL ++D Y GRPLTR A+ L LL+FIRSS
Sbjct: 181 IEYNPAQDLAGALVTRKATHRAALPLERLPELLLRMDDYCGRPLTRMAVRLCLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELRFARW EID + ++WT+P ERE I V++SHRGSKM+T HLVPLS QA+ +L+QIK
Sbjct: 241 ELRFARWDEIDLDRALWTLPAEREVIDKVRYSHRGSKMKTPHLVPLSGQAITVLEQIKAL 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRD 360
+L+F GDH ++PMSENT+N+ALR MGYDTK E+CGHGFRTMACS+LVESG+WSRD
Sbjct: 301 TQDDNLVFPGDHHPNRPMSENTINNALRRMGYDTKTEICGHGFRTMACSALVESGMWSRD 360
Query: 361 AVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEY 412
AVERQMSH RN+VRAAYIHKAEH++ERRLM+QWWAD+LD R+ ++ P+ +
Sbjct: 361 AVERQMSHQERNNVRAAYIHKAEHMDERRLMVQWWADYLDKCRDGYVVPYGF 412
>ref|YP_049780.1| phage integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
emb|CAG74585.1| phage integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
Length = 425
Score = 508 bits (1308), Expect = e-142
Identities = 253/423 (59%), Positives = 316/423 (74%), Gaps = 9/423 (2%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD KV+ AK +K+Y LTDG GMHLLVHPNGSKYWRL YR+E KQ++LALGVYP ++
Sbjct: 1 MSLTDSKVKNAKSLEKEYKLTDGFGMHLLVHPNGSKYWRLSYRFEKKQRLLALGVYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKND----KVEQSKARTFKEVAIEWHGTNKKWSEDH 116
LADAR RRDEA+KLLA G+DP KK+ D + +++ R FK VA W T WSED+
Sbjct: 61 LADARQRRDEAKKLLAAGIDPSAKKQADNKTIQEKRNNTRAFKTVAKSWFSTKTTWSEDY 120
Query: 117 AHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAV 176
V LE LF +G ++IAEL T DLLAPIK +E G LE+A R++Q TTAIMRYAV
Sbjct: 121 QRSVWTRLETYLFPDIGNKDIAELDTGDLLAPIKKIEKLGYLEIAMRVKQYTTAIMRYAV 180
Query: 177 QSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRP-LTRWAIELTLLI 235
Q +I +NPA ++ GAV +HRPA+EL+ IP LL +I+ Y GR LT+ AI+L LLI
Sbjct: 181 QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYQGRSRLTQLAIKLNLLI 240
Query: 236 FIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILK 295
F+RSSELRFARWSEIDF++++W IP +R+ I G+KHS RG+KMR H VPL QALAIL+
Sbjct: 241 FVRSSELRFARWSEIDFKSALWVIPEQRQAIEGIKHSGRGAKMRRKHYVPLCDQALAILE 300
Query: 296 QIKQFY----GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL 351
++K G I G +D+ KPMSENT+N ALR MGYDTK ++CGHGFRT+ACS+L
Sbjct: 301 ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL 360
Query: 352 VESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFE 411
+ESG+W D VE QMSHM +N+VRAAY HKA+HLE+RRLMLQWWADFLD NR + PFE
Sbjct: 361 IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANRNGMVRPFE 420
Query: 412 YAK 414
+A+
Sbjct: 421 FAQ 423
>ref|YP_153333.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
gb|AAV80021.1| integrase [Salmonella enterica subsp. enterica serovar Paratyphi A
str. ATCC 9150]
Length = 419
Score = 499 bits (1285), Expect = e-139
Identities = 245/419 (58%), Positives = 314/419 (74%), Gaps = 2/419 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 1 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA AR +RDEA+KLL G+DP ++K + E S A TF+ +A EWH +NK+WSEDH
Sbjct: 61 VTLAQARAKRDEAKKLLVQGIDPKAEQKEAQAENSGAYTFETIAREWHESNKRWSEDHRS 120
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 121 RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKEVDTSGKHDVAQRLQQRVTAIMRYAVQN 180
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +TR A+EL+LL F+R
Sbjct: 181 DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR 240
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW E DF+ S+W IP +RE I GV++S+RG KM+ H+VPLS QA+ +L+Q+K
Sbjct: 241 SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLEQLK 300
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
Q G +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA +L ESGLWS
Sbjct: 301 QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 360
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINN 417
DA+ERQ+SH RNSVRAAYIH +EHL+ERRLM+QWWAD+LD N+ + IS F+YAK+++
Sbjct: 361 EDAIERQLSHSERNSVRAAYIHTSEHLDERRLMVQWWADYLDANKIKPISSFDYAKLHS 419
>ref|NP_458899.1| integrase [Salmonella enterica subsp. enterica serovar Typhi str.
CT18]
ref|NP_808103.1| integrase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
pir||AB1062 integrase [imported] - Salmonella enterica subsp. enterica serovar
Typhi (strain CT18)
emb|CAD06943.1| integrase [Salmonella enterica subsp. enterica serovar Typhi]
gb|AAO71963.1| integrase [Salmonella enterica subsp. enterica serovar Typhi Ty2]
Length = 421
Score = 498 bits (1282), Expect = e-139
Identities = 242/419 (57%), Positives = 313/419 (74%), Gaps = 2/419 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 1 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA AR +RDEA+KLL G+DP ++K + E S A TF+ +A EWH +NK+WSEDH
Sbjct: 61 VTLAQARAKRDEAKKLLVQGIDPKTEQKEAQAENSGAYTFETIAREWHASNKRWSEDHRS 120
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 121 RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 180
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +TR A+EL+LL F+R
Sbjct: 181 DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR 240
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW E DF+ S+W +P +RE I GV++S+RG KM+ H+VPLS QA+ +L+Q+K
Sbjct: 241 SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMVLLEQLK 300
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
Q G +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA +L ESGLWS
Sbjct: 301 QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 360
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKINN 417
DA+ERQ+SH RN+VRAAYIH +EHL+ERRLM+QWWAD+LD+ + I+P+EYA++ N
Sbjct: 361 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLDIIQYEHITPYEYARVCN 419
>ref|YP_410429.1| putative P4-type integrase [Shigella boydii Sb227]
gb|ABB68601.1| putative P4-type integrase [Shigella boydii Sb227]
Length = 421
Score = 494 bits (1272), Expect = e-138
Identities = 240/418 (57%), Positives = 312/418 (74%), Gaps = 2/418 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 1 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA AR +RD+A+KLLA G+DP ++K + E S A +F+ +A EWH +NK+WSEDH
Sbjct: 61 VTLAQARAKRDQAKKLLAQGIDPKAEQKEAQAENSGAYSFETIAREWHASNKRWSEDHRS 120
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 121 RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 180
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +TR A+EL+LL F+R
Sbjct: 181 DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVELSLLTFVR 240
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW E DF+ S+W +P +RE I GV++S+RG KM+ H+V LS QA+ +L Q+K
Sbjct: 241 SSELRFARWDEFDFDKSLWRVPAKREEIKGVRYSYRGMKMKEEHIVQLSRQAMILLNQLK 300
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
Q G +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA +L ESGLWS
Sbjct: 301 QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 360
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DA+ERQ+SH RN+VRAAYIH +EHL+ERRLM+QWWAD+L N+ + I+P+++AKIN
Sbjct: 361 EDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLQANKGKTITPYDFAKIN 418
>gb|AAF06962.1|AF157599_1 P4 integrase-like protein [Escherichia coli]
Length = 428
Score = 491 bits (1265), Expect = e-137
Identities = 245/419 (58%), Positives = 312/419 (74%), Gaps = 3/419 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 5 MKLNARQVETAKPKDKSYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 64
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA+AR RRDEA+KLLA G+DP +K + E + A F+ +A EWH +NK+WSEDH
Sbjct: 65 VTLAEARTRRDEAKKLLAQGIDPKAVQKEAQAENAGAYNFETIAREWHASNKRWSEDHRA 124
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 125 RVLRYLELYIFPYIGLSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 184
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +T+ A+EL+LL F+R
Sbjct: 185 DYIDSNPASDMAGALSTAKTRHYPALPSHRFPEFLARLAAYRGRMMTKIAVELSLLTFVR 244
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW E DF+ S+W IP +RE I GV++S+RG KM+ HLVPLS QA+ +L+Q+K
Sbjct: 245 SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHLVPLSRQAIGLLEQLK 304
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
Q G L+F GDHD+ K MSENTVN+ALR MGYDTK EVCGHGFRTMA +L ESGLWS
Sbjct: 305 QISGDKTLLFPGDHDATKVMSENTVNNALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 364
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYA-KIN 416
DA+ERQ+SH RN+VRAAYIH +EHL+ERRLM+QWWAD+L NRE+ IS FE+A K+N
Sbjct: 365 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMVQWWADYLYSNREKHISAFEFANKLN 423
>ref|YP_050980.1| integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
emb|CAG75789.1| integrase [Erwinia carotovora subsp. atroseptica SCRI1043]
Length = 428
Score = 491 bits (1263), Expect = e-137
Identities = 246/423 (58%), Positives = 309/423 (73%), Gaps = 9/423 (2%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD KV+ AKP++K LTDG G++LLVH NGSKYW+L YR+EGKQK+ ++GVYP ++
Sbjct: 1 MSLTDTKVKNAKPSEKVVKLTDGFGLYLLVHTNGSKYWQLGYRFEGKQKVFSIGVYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKND----KVEQSKARTFKEVAIEWHGTNKKWSEDH 116
LA+AR RRDEA+KLLA GVDP KK+ D + +++ R FK VA W T WSED+
Sbjct: 61 LANARQRRDEAKKLLAAGVDPSAKKRADNKSVQEKRNNTRAFKTVAKSWFATKTTWSEDY 120
Query: 117 AHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAV 176
V LE LF +G ++IAEL T DLL PIK +E G LE+A R++Q TAIMRYAV
Sbjct: 121 QRSVWTRLETYLFPDIGNKDIAELDTGDLLVPIKKIEKLGYLEIAMRVKQYATAIMRYAV 180
Query: 177 QSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRP-LTRWAIELTLLI 235
Q +I +NPA ++ GAV +HRPA+EL+ IP LL +I+ Y GR LT+ AI+L LLI
Sbjct: 181 QQKMIRFNPAYDLEGAVQKPQTEHRPAIELEEIPTLLERIEGYKGRSRLTQLAIKLNLLI 240
Query: 236 FIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILK 295
FIRSSELRFARWSEIDF++ +W IP +RE I G+KHS RG+KMR H VPL QAL IL
Sbjct: 241 FIRSSELRFARWSEIDFKSGLWVIPEQREAIKGIKHSDRGAKMRRKHYVPLCEQALVILG 300
Query: 296 QIKQFY----GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL 351
++K G I G +D+ KPMSENT+N ALR MGYDTK ++CGHGFRT+ACS+L
Sbjct: 301 ELKDLTYDVNGDDGFILTGCYDAMKPMSENTINKALRKMGYDTKTDLCGHGFRTLACSAL 360
Query: 352 VESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFE 411
+ESG+W D VE QMSHM +N+VRAAY HKA+HLE+RRLMLQWWADFLD N + PFE
Sbjct: 361 IESGIWPEDVVELQMSHMEKNNVRAAYTHKAKHLEQRRLMLQWWADFLDANGSGMVRPFE 420
Query: 412 YAK 414
+A+
Sbjct: 421 FAQ 423
>ref|NP_042035.1| integrase [Bacteriophage P4]
sp|P08320|VINT_BPP4 Integrase
emb|CAA35897.1| unnamed protein product [Enterobacteria phage P4]
Length = 439
Score = 490 bits (1262), Expect = e-137
Identities = 240/410 (58%), Positives = 306/410 (74%), Gaps = 2/410 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 5 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 64
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA AR +RDEA+KLL G+DP +K + E S A TF+ +A EWH +NK+WSEDH
Sbjct: 65 VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKRWSEDHRS 124
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 125 RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 184
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +TR A++L+LL F+R
Sbjct: 185 DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRIAVKLSLLTFVR 244
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW E DF+ S+W IP +RE I GV++S+RG KM+ H+VPLS QA+ +L Q+K
Sbjct: 245 SSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQLK 304
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
Q G +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA +L ESGLWS
Sbjct: 305 QISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLWS 364
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFIS 408
DA+ERQ+SH RN+VRAAYIH +EHL+ERRLM+QWWAD+LD+NR ++IS
Sbjct: 365 DDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYIS 414
>emb|CAA29379.1| integrase (P4 int) (AA 1-440) [Enterobacteria phage P4]
Length = 440
Score = 486 bits (1252), Expect = e-136
Identities = 240/411 (58%), Positives = 306/411 (74%), Gaps = 3/411 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V AKP DK Y + DGGG++L V GSKYWR++YR + K+ LA GV+P
Sbjct: 5 MKLNARQVETAKPKDKTYKMADGGGLYLEVSAKGSKYWRMKYRRPSDKKEDRLAFGVWPT 64
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
+TLA AR +RDEA+KLL G+DP +K + E S A TF+ +A EWH +NK+WSEDH
Sbjct: 65 VTLAQARAKRDEAKKLLVQGIDPKVVQKEARAENSGAYTFEAIAREWHASNKRWSEDHRS 124
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+ LE +F +G +I +LKT LLAPIK V+ SG+ +VA RLQQR TAIMRYAVQ+
Sbjct: 125 RVLRYLELYIFPHIGSSDIRQLKTSHLLAPIKKVDASGKHDVAQRLQQRVTAIMRYAVQN 184
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRW-AIELTLLIFI 237
ID NPA +MAGA+++ +H PAL R PE L ++ +Y GR +TR A++L+LL F+
Sbjct: 185 DYIDSNPASDMAGALSTTKARHYPALPSSRFPEFLARLAAYRGRVMTRMIAVKLSLLTFV 244
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
RSSELRFARW E DF+ S+W IP +RE I GV++S+RG KM+ H+VPLS QA+ +L Q+
Sbjct: 245 RSSELRFARWDEFDFDKSLWRIPAKREEIKGVRYSYRGMKMKEEHIVPLSRQAMILLNQL 304
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
KQ G +L+F GDHD+ K MSENTVNSALR MGYDTK EVCGHGFRTMA +L ESGLW
Sbjct: 305 KQISGDKELLFPGDHDATKVMSENTVNSALRAMGYDTKTEVCGHGFRTMARGALGESGLW 364
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFIS 408
S DA+ERQ+SH RN+VRAAYIH +EHL+ERRLM+QWWAD+LD+NR ++IS
Sbjct: 365 SDDAIERQLSHSERNNVRAAYIHTSEHLDERRLMMQWWADYLDMNRNKYIS 415
>ref|YP_407678.1| putative P4-type integrase [Shigella boydii Sb227]
gb|ABB65850.1| putative P4-type integrase [Shigella boydii Sb227]
Length = 420
Score = 473 bits (1217), Expect = e-132
Identities = 231/415 (55%), Positives = 304/415 (73%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+L D K+R KP+ K L+D G++LLV+ GS+ W L+YR+ GK+ ++LG YP ++
Sbjct: 1 MSLNDSKIRNLKPSSKPVKLSDSHGLYLLVNQGGSRIWYLKYRFSGKESRVSLGAYPLVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LA+AR RRD+ RKLL ++P ++ +DK S + FK VA+ WH TNKKWS D+A R+
Sbjct: 61 LAEARQRRDDIRKLLTQNINPAHQRMSDKAAASPEKYFKAVALAWHKTNKKWSPDYAARI 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L S+E+++F A+G + LKT++ A ++ +E G LEVA+R +Q+ IMRYAVQ G
Sbjct: 121 LASMENHIFPAIGHLPVTTLKTQNFTALLRVIEDKGFLEVASRTRQQLCNIMRYAVQQGF 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYT-GRPLTRWAIELTLLIFIRS 239
+ N AQ + G A + H PAL L+R+PEL +I Y GR LTR A+ LTL +FIRS
Sbjct: 181 TENNLAQHLEGVTAPPVKNHYPALPLERLPELFERIGDYQQGRQLTRLAVVLTLHLFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARW EIDF IWTIP RE I V+ S RG+KMRT ++VPLS QA+AILKQIK+
Sbjct: 241 SELRFARWGEIDFRNKIWTIPATREAIEKVRFSGRGAKMRTPYIVPLSRQAIAILKQIKE 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G +L+F GDH+ +KPMSENTVN ALR+MGYDTK +VCGHGFRTMACS+LVE+ LWSR
Sbjct: 301 ISGHLELVFPGDHNPYKPMSENTVNRALRLMGYDTKTDVCGHGFRTMACSALVETELWSR 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
D VERQMSH RNSVRAAYIH+AEHL+ R M+QWW+D+LDV+RE +++P+ YA+
Sbjct: 361 DTVERQMSHQERNSVRAAYIHRAEHLDARTAMMQWWSDYLDVSREGYVAPYIYAR 415
>ref|NP_458759.1| bacteriophage integrase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
ref|NP_807963.1| bacteriophage integrase [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
pir||AC1044 bacteriophage integrase [imported] - Salmonella enterica subsp.
enterica serovar Typhi (strain CT18)
emb|CAD06800.1| bacteriophage integrase [Salmonella enterica subsp. enterica
serovar Typhi]
gb|AAO71823.1| bacteriophage integrase [Salmonella enterica subsp. enterica
serovar Typhi Ty2]
Length = 419
Score = 469 bits (1207), Expect = e-130
Identities = 228/413 (55%), Positives = 298/413 (72%), Gaps = 1/413 (0%)
Query: 3 LTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLA 62
LTD K+RAAKP K Y LTD G++L V +GSK W +YR+EGK+ LA G YP++TLA
Sbjct: 2 LTDSKIRAAKPLAKSYKLTDAQGLYLTVSTSGSKLWYFRYRFEGKENRLAFGPYPQVTLA 61
Query: 63 DARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVL 121
+AR +RD ARKLL +GV P +K +K RTF+ +A WH + K WSEDHA ++L
Sbjct: 62 EAREKRDAARKLLVSGVCPSLPRKAEKAAVDGTRTFQYIATAWHSSCLKLWSEDHADKIL 121
Query: 122 KSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLI 181
L+ +F +G +IAE++TR L +K+++ G +VA R++Q T IMR+AVQ G I
Sbjct: 122 TCLKRYVFPDIGAMDIAEVETRHLAQLVKSIDDKGVHDVAGRVRQHLTKIMRHAVQQGTI 181
Query: 182 DYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSE 241
YNPA ++ G V QH PAL LKR+PELL KI+ Y GR LTR A+EL L +F+RSSE
Sbjct: 182 KYNPAYDLDGVVTPVVTQHHPALPLKRLPELLDKINGYKGRELTRLALELNLHVFLRSSE 241
Query: 242 LRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFY 301
LR ARW E + +A IWT+P +RE + V+ S RG+KM+ HLVPLS QA+A+L+QIK+
Sbjct: 242 LRLARWDEFNLKARIWTVPAKREAVKNVRFSERGAKMKDEHLVPLSAQAVALLEQIKEIT 301
Query: 302 GAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDA 361
G +F G H +KPMSENT+N ALRV+GYDTK EVCGHGFRTMACS+L ES LWS+DA
Sbjct: 302 GESVFVFAGAHSMNKPMSENTINKALRVIGYDTKTEVCGHGFRTMACSALNESALWSKDA 361
Query: 362 VERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
+ERQMSH RN VRAAY+HKAEHLE R M+QWW+D+LD++RE +++P+ YA+
Sbjct: 362 IERQMSHKERNGVRAAYVHKAEHLEARMEMMQWWSDYLDMSREGYVAPYIYAR 414
>ref|ZP_00922739.1| COG0582: Integrase [Shigella dysenteriae 1012]
Length = 406
Score = 469 bits (1206), Expect = e-130
Identities = 229/396 (57%), Positives = 296/396 (74%), Gaps = 1/396 (0%)
Query: 20 LTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGV 79
L+D G++LLV+P GS+ W L+YR+ GK+ ++LG YP ++LA+AR +RD RKLLA +
Sbjct: 6 LSDSHGLYLLVNPGGSRIWYLKYRFNGKESRVSLGAYPLVSLAEARQQRDGIRKLLAQNI 65
Query: 80 DPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAE 139
+P ++ +K S + FK VA+ WH TNKKWS D+A R+L S+E+++F A+G +A
Sbjct: 66 NPAQQRMAEKAACSPEKCFKAVALAWHKTNKKWSADYAARILASMENHIFPAIGHLPVAT 125
Query: 140 LKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQ 199
LKT+D A ++ +E G LEVA+R +Q+ + IMRYAVQ GL + NPAQ + G VAS +
Sbjct: 126 LKTQDFTALLRVIEDKGFLEVASRTRQQLSNIMRYAVQQGLTESNPAQHLDGVVASPVKN 185
Query: 200 HRPALELKRIPELLTKIDSYT-GRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWT 258
H PAL L+R+PELL +I Y GR LTR A+ LTL +FIRSSELRFA WSEIDF IWT
Sbjct: 186 HYPALPLERLPELLGRIGDYQQGRELTRLAVVLTLHLFIRSSELRFAHWSEIDFRHKIWT 245
Query: 259 IPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPM 318
IP RE I V+ S RG+KMRT H+VPLS QA+AILKQI++ G DL+F GDH+ +KPM
Sbjct: 246 IPATREAIDKVRFSGRGAKMRTPHIVPLSRQAIAILKQIQELSGHLDLVFPGDHNPYKPM 305
Query: 319 SENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAY 378
SENT N AL +MGYDTK E+CGHG R MACS+LVES LWSRD VERQMSH RNSVRAAY
Sbjct: 306 SENTTNRALHLMGYDTKTEICGHGLRAMACSALVESDLWSRDTVERQMSHQERNSVRAAY 365
Query: 379 IHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
+HKAEHLE R+ M+QWW+D+LDV RE +++P+ YA+
Sbjct: 366 VHKAEHLEARKAMMQWWSDYLDVCREGYVAPYIYAR 401
>ref|YP_455318.1| phage integrase [Sodalis glossinidius str. 'morsitans']
dbj|BAE74913.1| phage integrase [Sodalis glossinidius str. 'morsitans']
Length = 422
Score = 468 bits (1205), Expect = e-130
Identities = 229/416 (55%), Positives = 302/416 (72%), Gaps = 2/416 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L +V+ AK +K Y L+DGGGM+L V P GSKYWR++Y + K+ L+ GVYP
Sbjct: 1 MKLNPRQVQTAKAKEKSYKLSDGGGMYLEVTPRGSKYWRMKYHRPSDRKEDKLSFGVYPA 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
ITLA+AR +RDEA+KLLA G+DP +K + E + TF+ +A +WH N++W +
Sbjct: 61 ITLAEARAKRDEAKKLLAKGLDPKKVQKKEHAENNGEFTFESIARKWHSNNRRWENVTRN 120
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
+L SLE +F +G+ +I +LKTR LLA ++AVE +G+ EVA R+QQR T+IMRYAVQ+
Sbjct: 121 LILNSLEKYVFPIIGKNDIRQLKTRHLLAVVRAVEENGKHEVAQRIQQRITSIMRYAVQN 180
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
+I+ NPA +MAGA+ H PAL +P+ ++ SY GR +TR A+EL LL F+R
Sbjct: 181 EIIETNPALDMAGALIPPKSVHHPALAPIMLPQFFARLTSYKGRKITRIAVELNLLTFVR 240
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
SSELRFARW EIDFE ++W IP +REPI GV++S RG KM+++HLVPLS QA+ +LKQ+K
Sbjct: 241 SSELRFARWKEIDFEHALWEIPAKREPIAGVRYSERGMKMKSSHLVPLSKQAIELLKQLK 300
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
G IF GDHD MSENTVN ALRVMGYDTK E+CGHGFRTMA ++ ESGLW+
Sbjct: 301 VQRGDEAHIFPGDHDIKGVMSENTVNKALRVMGYDTKTEICGHGFRTMARGAMGESGLWA 360
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
D +E QMSH+ RN V+AAY+H +HLEERRLM+QWWAD+LD NRE +ISP+++AK
Sbjct: 361 DDVIELQMSHIERNGVKAAYLHTTKHLEERRLMMQWWADYLDANREHYISPYDFAK 416
>emb|CAB59974.1| integrase [Escherichia coli]
Length = 420
Score = 468 bits (1204), Expect = e-130
Identities = 223/415 (53%), Positives = 305/415 (73%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP ++
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRINGKESRIALGAYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGVRKMLALNINPVQQRAAERGSRTPDKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L S+ +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV GL
Sbjct: 121 LASMNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR+A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRFAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>ref|NP_931626.1| hypothetical protein plu4460 [Photorhabdus luminescens subsp.
laumondii TTO1]
emb|CAE16832.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 421
Score = 468 bits (1203), Expect = e-130
Identities = 225/416 (54%), Positives = 309/416 (74%), Gaps = 2/416 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRY--EGKQKMLALGVYPE 58
M L ++ AAKP DK Y L DGGG++L + P GSKYWR++YR + K+ LA GVYP
Sbjct: 1 MKLNARQIEAAKPKDKAYKLADGGGLYLEITPRGSKYWRMKYRRPTDKKEDRLAFGVYPV 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAH 118
I+LADAR +R+EA+KL+ANG+DP +K + E S F+ +A +WH +NK+W + +
Sbjct: 61 ISLADARAKRNEAKKLIANGIDPKATQKETQAEASGEFNFETIARKWHSSNKRWGDYNRA 120
Query: 119 RVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQS 178
RVL+SLE +F +G+ +I +LKTR+LL PIKAV+ + +++VA RLQQ TAIMRYAVQ
Sbjct: 121 RVLRSLEQYIFPHIGKIDIRQLKTRELLVPIKAVDDADKVDVAKRLQQCVTAIMRYAVQC 180
Query: 179 GLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIR 238
G+I+ NPA +MAGA+++ +H PAL R+PELL + + GR +TR AIE LL F+R
Sbjct: 181 GIIESNPALDMAGALSTTKTEHHPALPPSRLPELLERTALFKGREVTRIAIEFGLLTFVR 240
Query: 239 SSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIK 298
+S+LRF RW E DF+ +IW IP +RE I VK S RG KM+T H+VPLS+QA+A+L+++K
Sbjct: 241 ASKLRFVRWDEFDFDNAIWEIPGKREAIENVKFSERGMKMKTPHIVPLSSQAMALLEKLK 300
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
++ G + +F GD D +K MSENTVN ALRVMGYD K E+C HGFRTMA ++ ESG+W+
Sbjct: 301 EYSGDNRCLFPGDRDPNKVMSENTVNKALRVMGYDIKTEICYHGFRTMARGAMGESGIWA 360
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
D +ERQ+SH+ RN+V+AAY+H + HL+E RLMLQWWAD+LD NR+ FISP++YA+
Sbjct: 361 DDVIERQLSHLERNNVKAAYLHTSHHLDECRLMLQWWADYLDANRQGFISPYDYAQ 416
>emb|CAA08754.1| integrase [Yersinia pseudotuberculosis]
Length = 420
Score = 465 bits (1196), Expect = e-129
Identities = 224/415 (53%), Positives = 303/415 (73%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>ref|NP_754341.1| Prophage P4 integrase [Escherichia coli CFT073]
ref|YP_541203.1| prophage P4 integrase [Escherichia coli UTI89]
ref|YP_669862.1| bacteriophage integrase [Escherichia coli 536]
gb|AAN80908.1|AE016762_161 Prophage P4 integrase [Escherichia coli CFT073]
gb|ABE07672.1| prophage P4 integrase [Escherichia coli UTI89]
gb|ABG69961.1| bacteriophage integrase [Escherichia coli 536]
emb|CAJ76281.1| bacteriophage integrase [Escherichia coli]
Length = 423
Score = 464 bits (1195), Expect = e-129
Identities = 222/417 (53%), Positives = 306/417 (73%), Gaps = 1/417 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+L D K+R+ KPTDK + ++D G++LLV P GS+ W L+YR GK+ +ALG YP ++
Sbjct: 1 MSLNDAKIRSLKPTDKPFKVSDSHGLYLLVKPGGSRLWYLKYRINGKESRIALGAYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ + + + FK VA+EWH + KKWS++ A RV
Sbjct: 61 LSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWSQNTADRV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L L ++F +G + ELK+R + +K +E G LEVA+R +Q + IMRYAV GL
Sbjct: 121 LARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMRYAVHQGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
I+ NPA + G AS R+H P L L+R+PELL +IDSY GR LTR A+ LTL +FIRS
Sbjct: 181 IEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLTLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELR+ARW+EI+F IWTIP RE I GV++S RG+KMRT H+VPLS Q ++ILK+IK+
Sbjct: 241 SELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVISILKRIKE 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++L+F G HD +KPMSENT+N ALR MGY+TK ++CGHGFR MACS+L+ESGLWS+
Sbjct: 301 ISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALMESGLWSQ 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAKIN 416
DAVERQMSH RN+VR AYIHKAEH+E R M+QWW+D+LD+ E ++ P+ +++ N
Sbjct: 361 DAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPYIWSQQN 417
>ref|NP_405478.1| integrase [Yersinia pestis CO92]
ref|NP_669700.1| prophage integrase [Yersinia pestis KIM]
ref|NP_993013.1| integrase [Yersinia pestis biovar Microtus str. 91001]
ref|ZP_01174458.1| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275]
ref|YP_651207.1| integrase [Yersinia pestis Antiqua]
gb|AAM85951.1|AE013842_6 putative prophage integrase [Yersinia pestis KIM]
gb|AAC69581.1| CP4-like integrase [Yersinia pestis]
emb|CAA21384.1| int [Yersinia pestis]
gb|AAS61890.1| integrase [Yersinia pestis biovar Microtus str. 91001]
gb|ABG13262.1| integrase [Yersinia pestis Antiqua]
emb|CAL20556.1| integrase [Yersinia pestis CO92]
Length = 420
Score = 463 bits (1191), Expect = e-129
Identities = 223/415 (53%), Positives = 302/415 (72%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH N+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>emb|CAJ87584.1| putative prophage P4 integrase [Escherichia coli]
Length = 420
Score = 462 bits (1189), Expect = e-128
Identities = 223/415 (53%), Positives = 302/415 (72%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++L V P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRILKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKILALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>ref|ZP_00795109.1| COG0582: Integrase [Yersinia pestis Angola]
Length = 420
Score = 460 bits (1184), Expect = e-128
Identities = 222/415 (53%), Positives = 301/415 (72%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALR MGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRGMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH N+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>ref|ZP_00718588.1| COG0582: Integrase [Escherichia coli E110019]
ref|ZP_00734219.1| COG0582: Integrase [Escherichia coli 53638]
Length = 420
Score = 459 bits (1182), Expect = e-127
Identities = 222/415 (53%), Positives = 301/415 (72%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG Y I+
Sbjct: 1 MFLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYQAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK +A+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNLALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + +K +E G LEVA+R +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>ref|ZP_00925339.1| COG0582: Integrase [Escherichia coli 101-1]
Length = 304
Score = 453 bits (1165), Expect = e-125
Identities = 229/303 (75%), Positives = 260/303 (85%), Gaps = 1/303 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR+AKP K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPE++
Sbjct: 1 MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA +WH +N+KWS H+ R
Sbjct: 61 LADARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIAELKTRDLL PIKAVE SGRLEVAARLQQRTTAIMR+AVQSG
Sbjct: 121 VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SEL FARWSE+DFE ++WTIP ERE + GVKHS RGSKMRT HLVPLS QAL+IL++IK
Sbjct: 241 SELHFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS 300
Query: 300 FYG 302
G
Sbjct: 301 MSG 303
>ref|ZP_00712223.1| COG0582: Integrase [Escherichia coli B171]
Length = 304
Score = 451 bits (1161), Expect = e-125
Identities = 228/303 (75%), Positives = 259/303 (85%), Gaps = 1/303 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVR+AKP K Y LTDG GM LLVHPNGSKYWRL+YR+ GK+KMLALG YPE++
Sbjct: 1 MALSDVKVRSAKPEAKAYKLTDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLALGKYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
L DAR RRDEARKLLANGVDP + KK KVEQ + A TF+ VA +WH +N+KWS H+ R
Sbjct: 61 LTDARARRDEARKLLANGVDPSENKKAVKVEQEQEAITFEVVARDWHASNQKWSASHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIAELKTRDLL PIKAVE SGRLEVAARLQQRTTAIMR+AVQSG
Sbjct: 121 VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMRFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SEL FARWSE+DFE ++WTIP ERE + GVKHS RGSKMRT HLVPLS QAL+IL++IK
Sbjct: 241 SELHFARWSEVDFETAMWTIPGEREQLEGVKHSQRGSKMRTPHLVPLSRQALSILEKIKS 300
Query: 300 FYG 302
G
Sbjct: 301 MSG 303
>gb|AAD17660.1| unknown [Yersinia pestis]
Length = 420
Score = 450 bits (1157), Expect = e-125
Identities = 216/415 (52%), Positives = 299/415 (72%), Gaps = 1/415 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G +++LK R + +K ++ G LEVA+ +Q + IMR+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSKLKPRHFIDLLKGIKEKGLLEVASPTRQHLSNIMRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REP+ +++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPLLALRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGH FR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHRFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
DAVERQMSH N+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 361 DAVERQMSHQEHNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 415
>gb|ABB89924.1| P4-like integrase [Escherichia coli]
Length = 391
Score = 442 bits (1138), Expect = e-122
Identities = 213/390 (54%), Positives = 289/390 (74%), Gaps = 1/390 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++LLV P GS++W L+YR GK+ +ALG YP ++
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLLVKPGGSRHWILKYRINGKESRIALGAYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ AHR+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTAHRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L S+ +++F +G ++ELK R + +K +E G LEVA+R +Q + MR+AV GL
Sbjct: 121 LASMNNHIFPVIGNLPVSELKPRHFIDLLKRIEEKGLLEVASRTRQHLSNTMRHAVHQGL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYT-GRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I++Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIEAYNQGRELTRLAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERR 389
DAVERQMSH RN+VR AYIHKAEHLE R+
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARK 390
>ref|ZP_00823958.1| COG0582: Integrase [Yersinia mollaretii ATCC 43969]
Length = 332
Score = 436 bits (1121), Expect = e-120
Identities = 214/332 (64%), Positives = 260/332 (78%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR+AK DK Y LTD GMHLLVHPNGSKYWRL+YRY GK+ LALGVYP ++
Sbjct: 1 MALTDVKVRSAKTEDKPYKLTDSDGMHLLVHPNGSKYWRLRYRYLGKENTLALGVYPTLS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++ARV+RD ARKL+A G DP + K+ K +TF+ +A WH NK+WSE H+ +V
Sbjct: 61 LSEARVKRDAARKLIAEGSDPSEVKRAKKALPDTTQTFEVIARRWHAANKQWSEQHSAKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LK+LE LF G R+IA L+T DLL PI+ E +G LEV+ARL QRTTAIMRYAVQ G+
Sbjct: 121 LKNLEMYLFPVNGTRDIASLRTPDLLIPIRVAENAGFLEVSARLLQRTTAIMRYAVQCGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
IDYNPAQ+M GA+ + R HRPALEL RIPELL++I+ Y G+PLTR A+ L L +FIRSS
Sbjct: 181 IDYNPAQDMVGALTTVKRVHRPALELNRIPELLSRIEGYKGQPLTRLAVMLNLFVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID E ++WTIP EREPIPGVK SHRGSKMRTTHLVPLS Q+LA+L++++
Sbjct: 241 ELRYARWSEIDTERALWTIPAEREPIPGVKFSHRGSKMRTTHLVPLSQQSLAMLEELRLS 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSALRVMGY 332
G LIF GDHD KP+SENT+N ALR+MGY
Sbjct: 301 GGESGLIFPGDHDPRKPISENTINKALRLMGY 332
>ref|ZP_00695621.1| COG0582: Integrase [Shigella boydii BS512]
Length = 370
Score = 436 bits (1121), Expect = e-120
Identities = 215/365 (58%), Positives = 274/365 (75%), Gaps = 1/365 (0%)
Query: 51 LALGVYPEITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNK 110
++LG YP ++LA+AR +RD RKLLA ++P ++ +K S + FK VA+ WH TNK
Sbjct: 1 VSLGAYPLVSLAEARQQRDGIRKLLAQNINPAQQRMAEKSACSPEKCFKAVALAWHKTNK 60
Query: 111 KWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTA 170
KWS D+A R+L S+E+++F A+G +A LKT+D A ++ +E G LEVA+R +Q+ +
Sbjct: 61 KWSADYAARILASMENHIFPAVGHLPVAALKTQDFTALLRVIENKGFLEVASRTRQQLSN 120
Query: 171 IMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYT-GRPLTRWAI 229
IMRYAVQ GL D NPAQ + G AS + H PAL L+R+PELL +I Y GR LTR A+
Sbjct: 121 IMRYAVQQGLTDSNPAQHLEGVTASPVKNHYPALPLERLPELLDRIGDYRQGRELTRLAV 180
Query: 230 ELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQ 289
LTL +FIRSSELRFARWSEIDF IWTIP RE I V+ S RG+K+RT H+VPLS Q
Sbjct: 181 VLTLHLFIRSSELRFARWSEIDFRHKIWTIPATREAIDKVRFSGRGAKIRTPHIVPLSCQ 240
Query: 290 ALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACS 349
A+AILKQI++ G DL+F GDH+ +KPMSENT N ALR+MGYDTK E+CGHG R MACS
Sbjct: 241 AIAILKQIQELSGHLDLVFPGDHNPYKPMSENTTNRALRLMGYDTKTEICGHGLRAMACS 300
Query: 350 SLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISP 409
+LVES LWSRD VERQMSH RNSVRAAY+HKAEHLE R+ M+QWW+D+LDV RE +++P
Sbjct: 301 ALVESDLWSRDTVERQMSHQERNSVRAAYVHKAEHLEARKAMMQWWSDYLDVCREGYVAP 360
Query: 410 FEYAK 414
+ YA+
Sbjct: 361 YIYAR 365
>gb|ABB89926.1| P4-like integrase [Escherichia coli]
gb|ABB89927.1| P4-like integrase [Escherichia coli]
Length = 391
Score = 429 bits (1104), Expect = e-118
Identities = 212/390 (54%), Positives = 283/390 (72%), Gaps = 1/390 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++L V P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ + ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHRSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + K +E G LEVA+R +Q + I+R+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV +S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERR 389
DAVERQMSH RN+VR AYIHKAEHLE R+
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARK 390
>gb|ABB89923.1| P4-like integrase [Escherichia coli]
Length = 391
Score = 429 bits (1102), Expect = e-118
Identities = 213/390 (54%), Positives = 283/390 (72%), Gaps = 1/390 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++L V P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ + ++ + FK VA+ WH +N+KWS++ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + K +E G LEVA+R +Q + I+R+AV L
Sbjct: 121 LASLFNHIFPVIGNLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR AI L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAILLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV +S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFTNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERR 389
DAVERQMSH RN+VR AYIHKAEHLE R+
Sbjct: 361 DAVERQMSHQERNTVRMAYIHKAEHLEARK 390
>gb|ABB89925.1| P4-like integrase [Escherichia coli]
Length = 391
Score = 428 bits (1101), Expect = e-118
Identities = 212/390 (54%), Positives = 282/390 (72%), Gaps = 1/390 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M+LTD K+R KP+DK + ++D G++L V P GS++W L+YR GK+ +ALG YP I+
Sbjct: 1 MSLTDAKIRTLKPSDKPFKVSDSHGLYLRVKPGGSRHWYLKYRISGKESRIALGAYPAIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L+DAR +R+ RK+LA ++P ++ + ++ + FK VA+ WH +N+KWS+ A R+
Sbjct: 61 LSDARQQREGIRKMLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQSTADRL 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
L SL +++F +G ++ELK R + K +E G LEVA+R +Q + I+R+AV L
Sbjct: 121 LASLNNHIFPVIGNLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQEL 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRS 239
ID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRS
Sbjct: 181 IDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
SELRFARWSEIDF +WTIP REPI GV +S RG+KMR H+VPLS Q++AILKQIK
Sbjct: 241 SELRFARWSEIDFINRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKD 300
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++
Sbjct: 301 ITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAK 360
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERR 389
DAVERQMSH RN+VR AYIHKAEHLE R+
Sbjct: 361 DAVERQMSHQKRNTVRMAYIHKAEHLEARK 390
>ref|YP_348793.1| Phage integrase [Pseudomonas fluorescens PfO-1]
gb|ABA74802.1| Phage integrase [Pseudomonas fluorescens PfO-1]
Length = 438
Score = 425 bits (1092), Expect = e-117
Identities = 210/415 (50%), Positives = 289/415 (69%), Gaps = 4/415 (0%)
Query: 3 LTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQY-RYEGKQKMLALGVYPEITL 61
LTD R A+PTD+ Y L DG G++LL+ PNG K WRL+Y + +G++ + +LG YP I L
Sbjct: 8 LTDAACRLARPTDRPYKLFDGDGLYLLIQPNGRKGWRLRYVKPDGREGLTSLGSYPVIGL 67
Query: 62 ADARVRRDEARKLLANGVDPGDKKKNDKVEQS-KARTFKEVAIEWH-GTNKKWSEDHAHR 119
A+AR +R +A+++LA+G+DP + K+ K E + RTF+ VA++WH + +W+ DH+
Sbjct: 68 AEARQKRLDAKRMLADGIDPVESKRKAKTEDAVNGRTFESVALDWHKNMSARWTLDHSKN 127
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
V L + +F +G R IA+L T DL+ P++A+ G ++VA R+Q+ +IMR A +
Sbjct: 128 VFNRLNNYVFPFIGARAIADLDTYDLMQPLEAIRKRGTIDVALRVQRYLQSIMREAKRLR 187
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LI NPA ++ G + + HRP L L R+PELL +I +Y GR LTR + L+L +F+RS
Sbjct: 188 LIPMNPAYDLQGLIKAPRVSHRPTLPLSRLPELLARIYAYKGRELTRLTLMLSLHVFVRS 247
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMR-TTHLVPLSTQALAILKQIK 298
SELRFARW E D + +W IP R + V+HS RG+KM HLVPLS Q +A+L+QI
Sbjct: 248 SELRFARWCEFDLKRCVWEIPDTRPELEDVRHSTRGTKMAGDVHLVPLSPQVVAVLEQIH 307
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
GA DL+F GD + KPMSENTVN ALR MGYDTK E+CGHGFR+MACS+L+ESGLWS
Sbjct: 308 TLTGAFDLVFAGDARAWKPMSENTVNKALRTMGYDTKTEICGHGFRSMACSALIESGLWS 367
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYA 413
A+ERQMSH RNSVRAAYIHKAE +EERRL++ WW+ +L N + ++P E+A
Sbjct: 368 ETAIERQMSHRERNSVRAAYIHKAEFIEERRLIMNWWSRYLAANLQEHVTPHEFA 422
>ref|ZP_01642095.1| phage integrase [Pseudomonas putida W619]
gb|EAX15778.1| phage integrase [Pseudomonas putida W619]
Length = 439
Score = 423 bits (1087), Expect = e-116
Identities = 216/416 (51%), Positives = 288/416 (69%), Gaps = 4/416 (0%)
Query: 3 LTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQY-RYEGKQKMLALGVYPEITL 61
LTD R AK +++Y L DG G++LLV PNG K WRL+Y + +G++ + +LG YP + L
Sbjct: 8 LTDNACRTAKAREREYKLFDGDGLYLLVKPNGRKGWRLRYVKPDGREGLTSLGNYPVVGL 67
Query: 62 ADARVRRDEARKLLANGVDPGDKKKNDKVEQS-KARTFKEVAIEWH-GTNKKWSEDHAHR 119
ADAR +R E ++ LANG+DP K+ KV+ RTF+ VA++W+ G KW+ HA
Sbjct: 68 ADARHKRFELKQQLANGIDPIQSKQQAKVQAVINGRTFESVALDWYAGMVPKWAPGHAKT 127
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VL L+ ++F LG R I EL T DL+ P++AV G ++VA R++ +IMR A +
Sbjct: 128 VLSRLKTHVFPLLGARAIVELDTHDLMQPLEAVTKRGTIDVALRIKNYLQSIMREAKRLR 187
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LI NPA ++ G++ + HRPAL L R+PEL +ID Y GRPLTR + L+L +F+RS
Sbjct: 188 LITANPAHDLDGSIKTPRVTHRPALPLSRLPELQARIDGYKGRPLTRLTVMLSLHVFVRS 247
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMR-TTHLVPLSTQALAILKQIK 298
SELRFARW+E D + IW IP R + GV S RG+KM H+VPLS QA+A+L+QI
Sbjct: 248 SELRFARWNEFDLKRGIWEIPDTRPALDGVPFSTRGTKMAGDIHVVPLSPQAVALLEQIH 307
Query: 299 QFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWS 358
G +L+F GD KPMSENTVN+ALR MGYDTKV++CGHGFR MACS+LVESGLWS
Sbjct: 308 AITGKFELVFAGDAKPWKPMSENTVNAALRTMGYDTKVDICGHGFRAMACSALVESGLWS 367
Query: 359 RDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
A+ERQMSH RN+VRAAY HKAE LEERR+++ WW+ FL+ NRE ++P E+A+
Sbjct: 368 ETAIERQMSHKERNNVRAAYTHKAEFLEERRMIMTWWSRFLEANREDHVTPHEFAR 423
>gb|AAL01551.1| IntB [Escherichia fergusonii]
Length = 390
Score = 418 bits (1074), Expect = e-115
Identities = 206/388 (53%), Positives = 277/388 (71%), Gaps = 5/388 (1%)
Query: 26 MHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKK 85
M+LL+ PNGSK W ++YR +GK+K LALG YP+++L AR RD AR + G DP K
Sbjct: 1 MYLLIKPNGSKLWYMKYRIDGKEKKLALGPYPDVSLLKARQFRDAARSKVREGADPAVDK 60
Query: 86 KNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDL 145
K + ++ +TF+++A+ WH +++ S +A + + LE +F+ LG++ I ++ T+DL
Sbjct: 61 KIAQQKKKNRQTFRQIAMNWHADHRRCSAHYATTIQRRLERYMFSDLGDKYIHQIVTKDL 120
Query: 146 LAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALE 205
L ++ VE G LE+ A L+ T IMRYAV+ I NPA ++ G QH PAL
Sbjct: 121 LFTLRKVENKGFLEITAMLKNYVTEIMRYAVKKQFIKSNPALDLDGEFTPPGTQHYPALP 180
Query: 206 LKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREP 265
L+++PELL+ +GR LTR+A++L+LL F+RSSELRFARWSEID+ +W IP ERE
Sbjct: 181 LEKLPELLS-----SGRLLTRYALKLSLLFFVRSSELRFARWSEIDWRQKLWIIPEEREQ 235
Query: 266 IPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
I V+ SHRG+KM+T H+VPLS QA+AILKQ + G IF G++D K MS+NT+N
Sbjct: 236 IESVRFSHRGAKMKTQHIVPLSVQAIAILKQTEALSGHLTFIFPGEYDQDKCMSDNTINK 295
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALRVMGYDTK EVCGHGFR MACS+L ES LWS+ A+E+QMSH RNSV AAYIHKAE+L
Sbjct: 296 ALRVMGYDTKKEVCGHGFRAMACSALSESRLWSKQAIEKQMSHQERNSVGAAYIHKAEYL 355
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYA 413
EER M+QWWAD+LDVN ER++SP++YA
Sbjct: 356 EERISMMQWWADYLDVNTERYLSPYQYA 383
>ref|ZP_00699495.1| COG0582: Integrase [Shigella boydii BS512]
Length = 334
Score = 414 bits (1065), Expect = e-114
Identities = 197/326 (60%), Positives = 258/326 (79%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGAGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRATEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+P+T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQPVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSA 326
G + LIF G HD KP+SEN +N++
Sbjct: 301 AGENGLIFTGAHDPRKPISENVMNAS 326
>ref|YP_410566.1| putative P4-type integrase [Shigella boydii Sb227]
gb|ABB68738.1| putative P4-type integrase [Shigella boydii Sb227]
Length = 334
Score = 410 bits (1055), Expect = e-113
Identities = 196/326 (60%), Positives = 257/326 (78%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD K+RAAKPTDK Y LTDG GM LLVHPNGS+YWRL+YR GK+K LALGVYPE++
Sbjct: 1 MALTDAKIRAAKPTDKAYKLTDGTGMFLLVHPNGSRYWRLRYRILGKEKTLALGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
L++AR +RDEARKL++ GVDP ++K+ KV +F+ +A WH +NK+W++ H+ +V
Sbjct: 61 LSEARTKRDEARKLISEGVDPCEQKRAKKVVPDLQLSFEHIARRWHASNKQWAQSHSDKV 120
Query: 121 LKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGL 180
LKSLE ++F +G R+I L T DLL P++A E E+A+RLQQR +A+MRYAVQSG+
Sbjct: 121 LKSLETHVFPFIGNRDITTLNTPDLLIPVRAAEAKQIYEIASRLQQRISAVMRYAVQSGI 180
Query: 181 IDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSS 240
I YNPA +MAGA+ + RQHRPAL+L R+PELL++I SY G+ +T+ A+ L LL+FIRSS
Sbjct: 181 IRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIGSYKGQTVTQLAVMLNLLVFIRSS 240
Query: 241 ELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQF 300
ELR+ARWSEID + ++WTIP EREP+PGVK SHRGSKMRT HLVPLS QA+AIL +++ +
Sbjct: 241 ELRYARWSEIDIDNAMWTIPAEREPLPGVKFSHRGSKMRTPHLVPLSKQAVAILTELQTW 300
Query: 301 YGAHDLIFIGDHDSHKPMSENTVNSA 326
G + LIF G HD KP+SEN +N++
Sbjct: 301 AGENGLIFTGAHDPRKPISENVMNAS 326
>ref|ZP_00726491.1| COG0582: Integrase [Escherichia coli F11]
Length = 370
Score = 407 bits (1046), Expect = e-112
Identities = 196/364 (53%), Positives = 268/364 (73%), Gaps = 1/364 (0%)
Query: 54 GVYPEITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWS 113
G YP ++L+DAR +R+ RK+LA ++P ++ ++ + + + FK VA+EWH + KKWS
Sbjct: 1 GAYPAVSLSDARQQREGIRKMLALNINPAQQRAAERGSRMQEKMFKSVALEWHSSKKKWS 60
Query: 114 EDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMR 173
++ A RVL L ++F +G + ELK+R + +K +E G LEVA+R +Q + IMR
Sbjct: 61 QNTADRVLARLNRHVFPTIGHLPVTELKSRHFIELLKGIEEKGLLEVASRSRQHLSNIMR 120
Query: 174 YAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELT 232
YAV GLI+ NPA + G AS R+H P L L+R+PELL +IDSY GR LTR A+ LT
Sbjct: 121 YAVHQGLIEINPAANLDGVTASPARRHYPTLPLERLPELLERIDSYHQGRELTRLAVLLT 180
Query: 233 LLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALA 292
L +FIRSSELR+ARW+EI+F IWTIP RE I GV++S RG+KMRT H+VPLS Q ++
Sbjct: 181 LHVFIRSSELRYARWTEINFRNRIWTIPATREAIAGVRYSSRGAKMRTPHIVPLSEQVIS 240
Query: 293 ILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLV 352
ILK+IK+ G ++L+F G HD +KPMSENT+N ALR MGY+TK ++CGHGFR MACS+L+
Sbjct: 241 ILKRIKEISGGYELVFPGYHDPYKPMSENTINKALRQMGYNTKQDICGHGFRAMACSALM 300
Query: 353 ESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEY 412
ESGLWS+DAVERQMSH RN+VR AYIHKAEH+E R M+QWW+D+LD+ E ++ P+ +
Sbjct: 301 ESGLWSQDAVERQMSHQERNTVRLAYIHKAEHMEARMDMMQWWSDYLDMCSEIWVPPYIW 360
Query: 413 AKIN 416
++ N
Sbjct: 361 SQQN 364
>ref|YP_455784.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
dbj|BAE75379.1| putative phage integrase [Sodalis glossinidius str. 'morsitans']
Length = 291
Score = 403 bits (1035), Expect = e-110
Identities = 204/273 (74%), Positives = 232/273 (84%), Gaps = 1/273 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+KVRAAKP K Y L DG GM LLVHPNGSKYWRL+YR+ GK+KML LG YPE+
Sbjct: 1 MALSDVKVRAAKPEAKAYKLKDGEGMVLLVHPNGSKYWRLRYRFGGKEKMLELGQYPEVL 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-ARTFKEVAIEWHGTNKKWSEDHAHR 119
LADAR RRDEARKLLANG++P + KK KVEQ + A TF+ VA +WH +N+KWS H+ R
Sbjct: 61 LADARSRRDEARKLLANGINPIENKKAIKVEQEQEAITFEVVARDWHASNQKWSASHSAR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
VLKSLEDNLF A+G+RNIAELKTRDLL PIKAVE SGRLEVAARLQQRTTAIM +AVQSG
Sbjct: 121 VLKSLEDNLFTAIGKRNIAELKTRDLLVPIKAVESSGRLEVAARLQQRTTAIMCFAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDYNPAQE+AGAVA+ RQHR ALEL RIPELL +ID Y+GRPLTR A+ELTLL+FIRS
Sbjct: 181 LIDYNPAQEIAGAVATAKRQHRAALELNRIPELLHRIDHYSGRPLTRLAVELTLLVFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHS 272
SELRFARW E+DF+ + WTIP EREP+ GVKHS
Sbjct: 241 SELRFARWPEVDFDTAKWTIPGEREPLEGVKHS 273
>ref|ZP_01368179.1| hypothetical protein PaerPA_01005335 [Pseudomonas aeruginosa PACS2]
Length = 405
Score = 395 bits (1016), Expect = e-108
Identities = 200/389 (51%), Positives = 268/389 (68%), Gaps = 4/389 (1%)
Query: 30 VHPNGSKYWRLQY-RYEGKQKMLALGVYPEITLADARVRRDEARKLLANGVDPGDKKKND 88
+ PNG K WRL+Y + +G++ + ALG YP + L DAR +R E ++ LANG+DP K+
Sbjct: 1 MQPNGRKGWRLRYVKPDGREGLTALGSYPVVGLGDARRKRFEIKQQLANGIDPIQYKQQT 60
Query: 89 KVEQS-KARTFKEVAIEWHGTN-KKWSEDHAHRVLKSLEDNLFAALGERNIAELKTRDLL 146
K + RTF+ VA++WH + KW+ HA VL L+ ++F +G + I EL T DL+
Sbjct: 61 KTQAVINGRTFESVALDWHASMVPKWAPGHAKTVLSRLKTHVFPLIGAKAIVELYTHDLM 120
Query: 147 APIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALEL 206
P++AV G ++VA R++ +IMR A + LI NPA ++ G++ + HRPAL L
Sbjct: 121 QPLEAVTKRGTIDVALRIKNYLQSIMREAKRLRLITANPAHDLDGSIKTPRLTHRPALPL 180
Query: 207 KRIPELLTKIDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPI 266
R+PELL I+ Y GRPLTR + L+L +F+RSSELRFARW+E D + IW IP R +
Sbjct: 181 SRLPELLASIEDYRGRPLTRLTVMLSLHVFVRSSELRFARWNEFDLKRGIWEIPDTRPAL 240
Query: 267 PGVKHSHRGSKMR-TTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNS 325
GV S RG+KM H+VPLS QA+A+L+QI G +L+F GD KPMSENTVN+
Sbjct: 241 DGVPFSTRGTKMAGDIHVVPLSPQAVALLEQIHAITGKFELVFAGDAKPWKPMSENTVNA 300
Query: 326 ALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHL 385
ALR MGYDTKV++CGHGFR MACS+LVESGLWS A+ERQMSH RN+VRAAY HKAE L
Sbjct: 301 ALRTMGYDTKVDICGHGFRAMACSALVESGLWSETAIERQMSHKERNNVRAAYTHKAEFL 360
Query: 386 EERRLMLQWWADFLDVNRERFISPFEYAK 414
EERR+++ WW+ FL+ NRE ++P E+AK
Sbjct: 361 EERRMIMTWWSRFLEANREDHVTPHEFAK 389
>ref|ZP_00926261.1| COG0582: Integrase [Escherichia coli 101-1]
Length = 249
Score = 389 bits (998), Expect = e-106
Identities = 185/249 (74%), Positives = 214/249 (85%)
Query: 172 MRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIEL 231
MRYAVQSG+I YNPA +MAGA+ + RQHRPAL+L R+PELL++ID Y G+P+TR A+ L
Sbjct: 1 MRYAVQSGIIRYNPALDMAGALTTVKRQHRPALDLSRLPELLSRIDGYKGQPVTRLAVML 60
Query: 232 TLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQAL 291
LL+FIRSSELR++RWSEID + ++WTIP EREP+PGVK+SHRGSKMRT HLVPLS QA+
Sbjct: 61 NLLVFIRSSELRYSRWSEIDIDNAMWTIPAEREPLPGVKYSHRGSKMRTPHLVPLSKQAV 120
Query: 292 AILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSL 351
AIL +++ + G + LIF G HD KP+SENTVN ALRVMGYDT EVCGHGFR MACS+L
Sbjct: 121 AILTELQTWAGENGLIFTGAHDPRKPISENTVNKALRVMGYDTTQEVCGHGFRAMACSAL 180
Query: 352 VESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFE 411
+ESGLWSRDAVERQMSH RN VRAAYIHKAEHLEERRLMLQWWADFL NRE+ ISPFE
Sbjct: 181 IESGLWSRDAVERQMSHQERNGVRAAYIHKAEHLEERRLMLQWWADFLGANREQCISPFE 240
Query: 412 YAKINNPLK 420
YAKINNPLK
Sbjct: 241 YAKINNPLK 249
>ref|NP_290910.1| partial putative integrase [Escherichia coli O157:H7 EDL933]
gb|AAG59476.1|AE005659_11 partial putative integrase [Escherichia coli O157:H7 EDL933]
Length = 301
Score = 379 bits (974), Expect = e-103
Identities = 192/261 (73%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD KVR+AKP +K+Y L DG GM LLV P GSKYWR ++R+ GKQ ++A GVYP+++
Sbjct: 27 MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS 86
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR-TFKEVAIEWHGTNKKWSEDHAHR 119
LADAR +R+EARKL+A G+DP + K+ K EQ+K TF++VA EW TN+KWSEDHA+R
Sbjct: 87 LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR 146
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
V KSLEDN+F +G RNIAEL TRDLL PIKAVE SGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 147 VKKSLEDNIFPTIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG 206
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDY+PAQEM+GAVAS NRQHRPALELKRIPELL KIDSYTGRPLT ELTLLIFIRS
Sbjct: 207 LIDYDPAQEMSGAVASSNRQHRPALELKRIPELLDKIDSYTGRPLTHCTTELTLLIFIRS 266
Query: 240 SELRFARWSEIDFEASIWTIP 260
S+L FARWSEIDFE S+WTIP
Sbjct: 267 SKLHFARWSEIDFETSMWTIP 287
>ref|NP_313280.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
dbj|BAB38676.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
Length = 275
Score = 379 bits (974), Expect = e-103
Identities = 192/261 (73%), Positives = 221/261 (84%), Gaps = 1/261 (0%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD KVR+AKP +K+Y L DG GM LLV P GSKYWR ++R+ GKQ ++A GVYP+++
Sbjct: 1 MALTDTKVRSAKPEEKEYSLVDGDGMSLLVKPGGSKYWRFRFRFGGKQHLMAFGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR-TFKEVAIEWHGTNKKWSEDHAHR 119
LADAR +R+EARKL+A G+DP + K+ K EQ+K TF++VA EW TN+KWSEDHA+R
Sbjct: 61 LADARKKREEARKLVAAGIDPREHKRAVKEEQAKEIITFEKVAREWLVTNQKWSEDHANR 120
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
V KSLEDN+F +G RNIAEL TRDLL PIKAVE SGRLEVA+RLQQRTTAIMRYAVQSG
Sbjct: 121 VKKSLEDNIFPTIGTRNIAELGTRDLLIPIKAVEKSGRLEVASRLQQRTTAIMRYAVQSG 180
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
LIDY+PAQEM+GAVAS NRQHRPALELKRIPELL KIDSYTGRPLT ELTLLIFIRS
Sbjct: 181 LIDYDPAQEMSGAVASSNRQHRPALELKRIPELLDKIDSYTGRPLTHCTTELTLLIFIRS 240
Query: 240 SELRFARWSEIDFEASIWTIP 260
S+L FARWSEIDFE S+WTIP
Sbjct: 241 SKLHFARWSEIDFETSMWTIP 261
>ref|NP_754310.1| Prophage P4 integrase [Escherichia coli CFT073]
ref|ZP_00721386.1| COG0582: Integrase [Escherichia coli F11]
ref|YP_669837.1| P4-like integrase [Escherichia coli 536]
gb|AAD37509.1|AF135406_2 P4-like integrase [Yersinia sp.]
gb|AAN80877.1|AE016762_130 Prophage P4 integrase [Escherichia coli CFT073]
gb|ABG69936.1| P4-like integrase [Escherichia coli 536]
Length = 347
Score = 379 bits (974), Expect = e-103
Identities = 185/342 (54%), Positives = 247/342 (72%), Gaps = 1/342 (0%)
Query: 74 LLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALG 133
+LA ++P ++ ++ ++ + FK VA+ WH +N+KWS++ A R+ SL +++F +G
Sbjct: 1 MLALNINPVQQRAAERGSRTPEKVFKNVALAWHKSNRKWSQNTADRLRASLNNHIFPVIG 60
Query: 134 ERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAV 193
++ELK R + +K +E G LEVA+R +Q + IMR+AV LID NPA + G
Sbjct: 61 NLPVSELKPRHFIDLLKGIEEKGLLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVT 120
Query: 194 ASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRSSELRFARWSEIDF 252
R+H PA L+R+PELL +I +Y GR LTR A+ L L +FIRSSELRFARWSEIDF
Sbjct: 121 TPPVRRHYPAPPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF 180
Query: 253 EASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDH 312
+WTIP REPI GV++S RG+KMR H+VPLS Q++AILKQIK G ++LIF GDH
Sbjct: 181 TNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH 240
Query: 313 DSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARN 372
+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++DAVERQMSH RN
Sbjct: 241 NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN 300
Query: 373 SVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPFEYAK 414
+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+ K
Sbjct: 301 TVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPYTIGK 342
>ref|YP_541179.1| putative integrase [Escherichia coli UTI89]
ref|YP_853069.1| putative phage integrase [Escherichia coli APEC O1]
gb|ABE07648.1| putative integrase [Escherichia coli UTI89]
gb|ABJ01355.1| putative phage integrase [Escherichia coli APEC O1]
Length = 320
Score = 353 bits (907), Expect = 8e-96
Identities = 177/320 (55%), Positives = 232/320 (72%), Gaps = 1/320 (0%)
Query: 74 LLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRVLKSLEDNLFAALG 133
+LA ++P ++ + ++ + FK VA+ WH +N+KWS++ A R+L SL +++F +G
Sbjct: 1 MLALNINPVQQRAAVRGSRTPEKVFKNVALAWHKSNRKWSQNTADRLLASLNNHIFPVIG 60
Query: 134 ERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAV 193
++ELK R + K +E G LEVA+R +Q + I+R+AV LID NPA + G
Sbjct: 61 NLPVSELKPRHFIDLQKGIEEKGLLEVASRTRQHLSNIIRHAVHQELIDTNPAANLGGVT 120
Query: 194 ASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIELTLLIFIRSSELRFARWSEIDF 252
R+H PAL L+R+PELL +I +Y GR LTR A+ L L +FIRSSELRFARWSEIDF
Sbjct: 121 TPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDF 180
Query: 253 EASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDH 312
+WTIP REPI GV +S RG+KMR H+VPLS Q++AILKQIK G ++LIF GDH
Sbjct: 181 TNRVWTIPATREPIIGVHYSGRGAKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDH 240
Query: 313 DSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARN 372
+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+L+ESGLW++DAVERQMSH RN
Sbjct: 241 NPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSALMESGLWAKDAVERQMSHQERN 300
Query: 373 SVRAAYIHKAEHLEERRLML 392
+VR AYIHKAEHLE R+ M+
Sbjct: 301 TVRMAYIHKAEHLEARKAMM 320
>gb|EAG93834.1| unknown [environmental sequence]
Length = 206
Score = 352 bits (902), Expect = 3e-95
Identities = 169/201 (84%), Positives = 180/201 (89%)
Query: 216 IDSYTGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRG 275
IDSYTGRPLTR A+ELTLL+FIRSSELRFARWSEIDFE S+WTIP ERE I GVKHS RG
Sbjct: 1 IDSYTGRPLTRLAVELTLLVFIRSSELRFARWSEIDFETSMWTIPAEREAIEGVKHSQRG 60
Query: 276 SKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTK 335
SKMRT HLVPLS QALAILKQ+ + G D +FIGDHD KPMSENTVN ALRVMGYDTK
Sbjct: 61 SKMRTPHLVPLSRQALAILKQVHKLSGDRDFVFIGDHDHRKPMSENTVNKALRVMGYDTK 120
Query: 336 VEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWW 395
VEVCGHGFRTMACSSL+ESGLWSRD VERQMSHM RNSVRAAYIHKAEHL+ERRLMLQWW
Sbjct: 121 VEVCGHGFRTMACSSLIESGLWSRDVVERQMSHMERNSVRAAYIHKAEHLDERRLMLQWW 180
Query: 396 ADFLDVNRERFISPFEYAKIN 416
ADFLD NRE+ +SPF+YAKIN
Sbjct: 181 ADFLDANREKAVSPFDYAKIN 201
>emb|CAC39282.1| integrase [Escherichia coli]
Length = 394
Score = 346 bits (887), Expect = 2e-93
Identities = 175/403 (43%), Positives = 261/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKV+ AKP DK Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct: 1 MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARKLLA G DPG+ KK +K+ Q S TF+ +A EWH + +WS +
Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYID 387
>ref|NP_290239.1| putative integrase for prophage 933L and the LEE pathogenicity
island [Escherichia coli O157:H7 EDL933]
ref|NP_312561.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
gb|AAG58803.1|AE005593_5 putative integrase for prophage 933L and the LEE pathogenicity
island [Escherichia coli O157:H7 EDL933]
gb|AAC31482.1| CP4-like integrase [Escherichia coli]
dbj|BAB37957.1| putative integrase [Escherichia coli O157:H7 str. Sakai]
Length = 393
Score = 346 bits (887), Expect = 2e-93
Identities = 173/403 (42%), Positives = 263/403 (65%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KV+ AKP ++ Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct: 1 MALTDVKVKTAKPKERPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKV--EQSKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARK+LA G DPG+ KK +K+ + S TF+ VA EWH T +WS +
Sbjct: 61 LADAREKRSEARKILAAGGDPGEAKKEEKIALQMSLKNTFEAVAREWHQTKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P LT + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLTDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFA W +IDFEA +W IP E KM+ H+VP S Q +A+ KQ+
Sbjct: 241 RTQELRFAHWEDIDFEAKLWEIPAE------------VMKMKRPHIVPPSEQVIALFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYID 387
>ref|NP_756353.1| Putative prophage integrase [Escherichia coli CFT073]
ref|ZP_00927118.1| COG0582: Integrase [Escherichia coli 101-1]
gb|AAN82927.1|AE016769_42 Putative prophage integrase [Escherichia coli CFT073]
gb|AAW51716.1| Int [Escherichia coli]
Length = 394
Score = 346 bits (887), Expect = 2e-93
Identities = 175/403 (43%), Positives = 261/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKV+ AKP DK Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct: 1 MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARKLLA G DPG+ KK +K+ Q S TF+ +A EWH + +WS +
Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLQNTFEAIAREWHQSKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYID 387
>ref|YP_691185.1| putative integrase [Shigella flexneri 5 str. 8401]
gb|AAD44730.1|AF141323_1 Int [Shigella flexneri]
gb|ABF05880.1| putative integrase [Shigella flexneri 5 str. 8401]
Length = 394
Score = 345 bits (884), Expect = 4e-93
Identities = 176/403 (43%), Positives = 260/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKV+ AKP DK Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct: 1 MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARKLLA G DPG+ KK +K+ Q S TF+ +A EWH +WS +
Sbjct: 61 LADAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+FIG +D KP+S+ ++N A+ ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFIGRNDPRKPISKESINQAIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRDTYNH-ALYLDGRREMMQWYADYID 387
>ref|YP_312525.1| putative integrase [Shigella sonnei Ss046]
gb|AAZ90290.1| putative integrase [Shigella sonnei Ss046]
Length = 394
Score = 343 bits (880), Expect = 1e-92
Identities = 174/403 (43%), Positives = 260/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKV+ AKP DK Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++T
Sbjct: 1 MALTDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
LA AR +R EARKLLA G DPG+ KK +K+ Q S TF+ +A EWH + +WS +
Sbjct: 61 LAGAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQSKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYID 387
>ref|ZP_00715634.1| COG0582: Integrase [Escherichia coli B7A]
Length = 404
Score = 342 bits (877), Expect = 2e-92
Identities = 171/402 (42%), Positives = 260/402 (64%), Gaps = 19/402 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KV+ AKP +K Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP+++
Sbjct: 1 MALTDVKVKTAKPKEKPYKLADGGGMYLLINANGSKYWRMKYRFAGKEKMLSIGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSK--ARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARK+LA G DPG+ KK +KV Q TF+ VA EWH T +WS +
Sbjct: 61 LADAREKRSEARKILAAGGDPGEVKKEEKVAQQMILKNTFEAVAREWHQTKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYIGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ H L+F+G +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHHPLVFVGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+ +E Q++H+ +N++R Y H A++L+ RR M+QW+ADF+
Sbjct: 346 NSAWIETQLAHVDKNAIRGTYNH-AQYLDGRREMMQWYADFI 386
>ref|NP_709437.1| putative integrase [Shigella flexneri 2a str. 301]
ref|NP_839238.1| putative integrase [Shigella flexneri 2a str. 2457T]
gb|AAD54663.1|AF097520_1 Sai integrase [Shigella flexneri]
gb|AAN45144.1| putative integrase [Shigella flexneri 2a str. 301]
gb|AAP19049.1| putative integrase [Shigella flexneri 2a str. 2457T]
Length = 403
Score = 338 bits (866), Expect = 5e-91
Identities = 171/401 (42%), Positives = 256/401 (63%), Gaps = 19/401 (4%)
Query: 3 LTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLA 62
+ DIKV+ AKP DK Y L DGGGM+LL++ NGSKYWR++YR+ GK+KML++GVYP++TLA
Sbjct: 12 INDIKVKTAKPKDKPYKLADGGGMYLLINTNGSKYWRMKYRFAGKEKMLSIGVYPDVTLA 71
Query: 63 DARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHAHR 119
DAR +R EARKLLA G DPG+ KK +K+ Q S TF+ +A EWH +WS +
Sbjct: 72 DAREKRSEARKLLAAGGDPGEAKKEEKIAQQMSLKNTFEAIAREWHQLKADRWSLRYRDE 131
Query: 120 VLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSG 179
++ + E ++F +G+R IAE+K LL ++ +E G LE +++QR + RYA+ +G
Sbjct: 132 IIDTFEKDIFPYIGKRPIAEIKPMKLLEALRKMEKRGALEKMRKVRQRCGEVFRYAIVTG 191
Query: 180 LIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +R+
Sbjct: 192 RADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGVRT 251
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + KQ++
Sbjct: 252 QELRFARWEDIDFETKLWEIPAE------------VMKMKRPHIVPLSEQVIMLFKQLEP 299
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
H L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G ++
Sbjct: 300 ISKHHPLVFIGRNDPRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-FNS 356
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 357 AWIEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYID 396
>ref|YP_072362.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
emb|CAH23124.1| putative integrase [Yersinia pseudotuberculosis IP 32953]
Length = 404
Score = 337 bits (864), Expect = 8e-91
Identities = 175/403 (43%), Positives = 258/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTDIKV+ AKP DK Y LTDGGGM+LLV PNGSKYWRL+YR+ GK+KML++GVYP+++
Sbjct: 1 MPLTDIKVKTAKPIDKAYKLTDGGGMYLLVKPNGSKYWRLKYRFVGKEKMLSIGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +RDEARK+LA G DPG+ KK DK+ Q S TF+ +A EWH +WS +
Sbjct: 61 LADARQKRDEARKVLAAGGDPGEVKKADKLAQKLSSENTFEAIAREWHKQKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F LG R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYLGRRPIAEIKPMELLETLRRLEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A+A+ + H P L + +P + + YTG +T+ A ++ + +
Sbjct: 181 TGRAEYNPAPDLATALATPKKTHFPFLTAEELPYFIRDLAGYTGSVITKTATQIIMQTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW +IDFE +W IP E KM+ H+VPLS Q + + + +
Sbjct: 241 RTQELRFARWEDIDFEKRLWEIPSE------------VIKMKRPHIVPLSEQVVELFQSL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
K G + L+FIG +D KP+S+ +VN + ++GY K + GHGFR + L E G +
Sbjct: 289 KPITGMYPLVFIGRNDRAKPISKESVNQVIELLGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +N++R Y H A +LE RR M+QW+ D L+
Sbjct: 346 NSAWIETQLAHVDKNAIRGTYNH-AHYLEGRREMMQWYGDNLE 387
>ref|YP_671637.1| putative phage integrase [Escherichia coli 536]
gb|ABG71736.1| putative phage integrase [Escherichia coli 536]
Length = 393
Score = 335 bits (858), Expect = 4e-90
Identities = 169/403 (41%), Positives = 258/403 (64%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTDIKV+ KP DK Y L DG GM+LL++ NGSKYWR++YR+ GK+KML+LGVYP++T
Sbjct: 1 MALTDIKVKTVKPKDKPYKLADGSGMYLLINTNGSKYWRMKYRFAGKEKMLSLGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKV--EQSKARTFKEVAIEWHGTN-KKWSEDHA 117
LADAR +R EARK+LA G DPG+ KK +K+ + S TF+ +A EWH + +WS +
Sbjct: 61 LADARQKRSEARKILAAGGDPGEVKKEEKIALQMSLKNTFEAIAREWHRSKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F LG+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 DEIIDTFEKDIFPYLGKRPIAEIKPMELLEALRKMEKRGALEKMRKVRQRCGEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G DYNPA ++A A+A+ + H P L +P L + YTG +T+ A ++ +L +
Sbjct: 181 TGRADYNPAPDLASALATPKKVHFPFLTANELPHFLNDLAGYTGSIITKTATQIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFA W +I+ E +W IP E KM+ H+VPLS Q + + KQ+
Sbjct: 241 RTQELRFAHWEDINLEKKLWEIPAE------------VMKMKRPHIVPLSEQVITLFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ + L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 EPISKHYPLVFIGRNDPRKPISKESINQVIELIGY--KGRLTGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR M+QW+AD++D
Sbjct: 346 NSAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMMQWYADYID 387
>ref|ZP_00829773.1| COG0582: Integrase [Yersinia frederiksenii ATCC 33641]
Length = 404
Score = 328 bits (840), Expect = 5e-88
Identities = 166/403 (41%), Positives = 263/403 (65%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L ++ AKP +K+Y LTDGGG++LLV PNG+KYWRL+YR+ GK+K L++GVYP+I+
Sbjct: 1 MPLNARQIDTAKPKEKEYKLTDGGGLYLLVKPNGAKYWRLKYRFLGKEKKLSIGVYPDIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LADAR++R+EARK++A G DPG++KK +K+ Q + TFK +A+EWH + WS+ +A
Sbjct: 61 LADARLKREEARKVIALGGDPGEEKKAEKLAQKANVENTFKAIALEWHEYKRPNWSKGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++++ E+++F +G+R IAE+K ++L+ ++ +E G L+ +++Q + RYA+
Sbjct: 121 EDLMEAFENDIFPDIGKRPIAEIKPLEVLSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G + NPA E+A A+ + H P L +P+ L + +Y+G P+TR A + +L +
Sbjct: 181 TGRAETNPASELASALTAPRSTHYPHLLADELPDFLQALAAYSGSPITRLATRILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELR A W E DF+ +W +P ER KMR HLVPLS Q +A L++I
Sbjct: 241 RTVELRQAEWKEFDFDKRVWEVPVER------------MKMRRPHLVPLSDQVVAALREI 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G ++L+F G +D KPMSE ++N L+ +GY K GHGFR + L E G +
Sbjct: 289 QAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +N++R Y H A++LE+RR MLQW+ D++D
Sbjct: 346 NTALIELQLAHVDKNTIRGTYNH-AQYLEQRREMLQWYGDYVD 387
>ref|ZP_00825977.1| COG0582: Integrase [Yersinia mollaretii ATCC 43969]
Length = 403
Score = 327 bits (838), Expect = 8e-88
Identities = 166/403 (41%), Positives = 263/403 (65%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L ++ AKP +K+Y LTDGGG++LLV PNG+KYWRL+YR+ GK+K L++GVYP+I+
Sbjct: 1 MPLNARQIDTAKPKEKEYKLTDGGGLYLLVKPNGAKYWRLKYRFLGKEKKLSIGVYPDIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LADAR++R+EARK++A G DPG++KK +K+ Q + TFK +A+EWH + WS+ +A
Sbjct: 61 LADARLKREEARKVIALGGDPGEEKKAEKLAQKANVENTFKAIALEWHEYKRPNWSKGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++++ E+++F +G+R IAE+K ++L+ ++ +E G L+ +++Q + RYA+
Sbjct: 121 EDLMEAFENDIFPDIGKRPIAEIKPLEVLSSLRKLEKRGVLDKLRKIRQACNQVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G + NPA E+A A+ + H P L +P+ L + +Y+G P+TR A + +L +
Sbjct: 181 TGRAETNPASELASALTAPRSTHYPHLLADELPDFLQALAAYSGSPITRLATRILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELR A W E DF+ +W +P ER KMR HLVPLS Q +A L++I
Sbjct: 241 RTVELRQAEWKEFDFDKRVWEVPVER------------MKMRRPHLVPLSDQVVAALREI 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G ++L+F G +D KPMSE ++N L+ +GY K GHGFR + L E G +
Sbjct: 289 QAVTGRYNLVFPGRNDITKPMSEASINQVLKRIGYHGK--ATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +N++R Y H A++LE+RR MLQW+ D++D
Sbjct: 346 NTAWIELQLAHVDKNTIRGTYNH-AQYLEQRREMLQWYGDYVD 387
>emb|CAB59975.1| integrase [Escherichia coli]
Length = 304
Score = 326 bits (836), Expect = 1e-87
Identities = 160/259 (61%), Positives = 198/259 (76%), Gaps = 1/259 (0%)
Query: 157 RLEVAARLQQRTTAIMRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKI 216
+LEVA+R +Q + IMR+AV LID NPA + G R+H PAL L+R+PELL +I
Sbjct: 41 KLEVASRTRQHLSNIMRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERI 100
Query: 217 DSY-TGRPLTRWAIELTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRG 275
+Y GR LTR A+ L L +FIRSSELRFARWSEIDF +WTIP REPI GV++S RG
Sbjct: 101 GAYHQGRELTRHAVLLMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRG 160
Query: 276 SKMRTTHLVPLSTQALAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTK 335
+KMR H+VPLS Q++AILKQIK G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK
Sbjct: 161 AKMRMPHIVPLSEQSIAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTK 220
Query: 336 VEVCGHGFRTMACSSLVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWW 395
++CGHGFR MACS+L+ESGLW++DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW
Sbjct: 221 KDICGHGFRAMACSALMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWW 280
Query: 396 ADFLDVNRERFISPFEYAK 414
+D+L+ RE + P+ K
Sbjct: 281 SDYLEACRESYAPPYTIGK 299
>ref|ZP_01112295.1| prophage CP4-like integrase [Alteromonas macleodii 'Deep ecotype']
gb|EAR03324.1| prophage CP4-like integrase [Alteromonas macleodii 'Deep ecotype']
Length = 412
Score = 322 bits (826), Expect = 2e-86
Identities = 177/409 (43%), Positives = 247/409 (60%), Gaps = 22/409 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTDI+++ A+ + K LTD G+ LLV NGSKYWRL+YR++GKQK LA+GVYPE++
Sbjct: 1 MPLTDIQIKQAQASTKDIWLTDEKGLRLLVKKNGSKYWRLKYRFQGKQKTLAIGVYPEVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNK-KWSEDHA 117
L DAR EAR+ L + +DP K+ K S+ F A W K +WSE HA
Sbjct: 61 LKDAREAVSEARRQLRDDIDPSAIKQEKKHLSSVSEIELFNTQARLWWNKQKGQWSEGHA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
R+ L DN LG+R I E+ +D++ ++ +E G L+VA R+ Q + R+AVQ
Sbjct: 121 ARIWTRLNDNALKTLGKRPIGEITPQDIIRTVQKIETRGALDVAQRVLQDIRRVCRFAVQ 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY--TGRPLTRWAIELTLLI 235
+G++ +NPA E++G + HR +L + +P+ L +D+Y GR LT+ AIEL +
Sbjct: 181 TGVLLHNPASELSGILEKRKTSHRASLPREELPQFLRDLDAYHQQGRLLTKLAIELLVHT 240
Query: 236 FIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILK 295
F+R EL ARW E D E +W IP R KM++ H+VPLS QALA+L+
Sbjct: 241 FVRPGELAGARWDEFDLEEKLWRIPAHR------------MKMKSDHIVPLSRQALAVLE 288
Query: 296 QIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYD----TKVEVCGHGFRTMACSSL 351
K F + +F + D K MS+NT+ A+ MGYD K + HGFR A S L
Sbjct: 289 NTKPFSARFEFVFPSERDRFKQMSDNTMRMAIFRMGYDGETKGKSKANPHGFRATASSIL 348
Query: 352 VESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
E+G ++ DA+ERQ+SHM RN VRAAY H A +LEER+ M+QWW+D+LD
Sbjct: 349 NETG-FNPDAIERQLSHMERNGVRAAYTHHARYLEERKEMMQWWSDYLD 396
>ref|ZP_01089574.1| probable cp4-like integrase protein [Blastopirellula marina DSM
3645]
gb|EAQ81490.1| probable cp4-like integrase protein [Blastopirellula marina DSM
3645]
Length = 392
Score = 318 bits (816), Expect = 3e-85
Identities = 175/403 (43%), Positives = 251/403 (62%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD VR AKP +K Y + D GG+ L V P+G K+WR +YR+ GK+K+LALG YP+I+
Sbjct: 1 MTLTDAAVRNAKPREKPYKIFDAGGLFLWVQPSGGKWWRYKYRFAGKEKLLALGSYPDIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNK-KWSEDHA 117
LADAR R ARK+LA+G DPG+ KK+ K + TF+ +A EW + + KW +
Sbjct: 61 LADARERHALARKVLASGNDPGEVKKDAKRLALLNSVTTFEALAREWCESRRHKWVTSYG 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+L LE ++F +G R IA++ +LLA ++ VE +G L++A RL Q + I RYA+
Sbjct: 121 EAMLTRLESHVFPKIGSRPIADITAPELLAVLRIVESTGALDLAQRLLQASGQIFRYAIA 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G + NPA ++ GA+ R+H+ L+ +PE L K+D+Y G T+ A++ LL F+
Sbjct: 181 TGRAERNPAVDLRGALKPPVRKHQAYLKADELPEYLQKLDAYDGSLQTKLALKFLLLTFV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELR A W EI+ + ++W IP ER KMR+ H+VPLS QA+ +L+++
Sbjct: 241 RTGELRGAEWKEINLDEAVWRIPAER------------MKMRSPHIVPLSRQAVDVLREL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
G +F H MSENT+ L MGY +K GHGFR+ A + L E G +
Sbjct: 289 HPLTGQWRFVFPNQHKPSGCMSENTMLFGLYRMGYHSK--ATGHGFRSTASTILNEHG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
S D +ERQ++H+ RN VRAAY H A++L ERR M+QWWADF+D
Sbjct: 346 SPDVIERQLAHVERNQVRAAYNH-AQYLPERREMMQWWADFID 387
>ref|ZP_00701012.1| COG0582: Integrase [Escherichia coli E24377A]
Length = 394
Score = 318 bits (815), Expect = 4e-85
Identities = 170/403 (42%), Positives = 251/403 (62%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALT +V A+P +K Y L+D G++LLV G++YWRL+YR GK+K LALGVYP+I+
Sbjct: 1 MALTARQVETARPKEKDYKLSDERGLYLLVKTTGARYWRLKYRIAGKEKKLALGVYPDIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR++RD+ARK+++ G DPG+KK+ +K+ Q S TF +A EWH WSE +
Sbjct: 61 LAEARIKRDDARKIISEGGDPGEKKRKEKLTQKISATNTFHALATEWHQHKSLSWSESYT 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
VL++L+ ++F LG+R++ ++ ++L ++ +E G LE +++Q I RYA+
Sbjct: 121 RSVLEALDKDIFPYLGKRSVTDILPLEMLEILRRIEKRGSLEKLRKVRQYCNQIFRYAIA 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G NPA E+ +A+ H P L +P L K+ Y G P+TR A L LL +
Sbjct: 181 TGRATVNPASELTSTLAAPKAAHFPHLRADELPVFLRKLAEYHGSPVTRMATNLLLLTGL 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELR A WSEIDF+ ++WTIP R KMR H+VPLS QA IL Q+
Sbjct: 241 RTIELRSAEWSEIDFDNALWTIPESR------------MKMRRKHVVPLSRQATDILLQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
K F G + L+F G D +KPMSE ++N L+ +GYD + GHGFR + L E G +
Sbjct: 289 KTFSGQYRLVFPGRCDINKPMSEASINMVLKRIGYDGR--ATGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A +L+ RR M+QW+AD++D
Sbjct: 346 NSAWIEMQLAHVDKNSIRGTYNH-ALYLDGRREMMQWYADYID 387
>ref|YP_621628.1| phage integrase [Burkholderia cenocepacia AU 1054]
ref|YP_836007.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
gb|ABF76655.1| phage integrase [Burkholderia cenocepacia AU 1054]
gb|ABK09114.1| phage integrase family protein [Burkholderia cenocepacia HI2424]
Length = 404
Score = 318 bits (814), Expect = 5e-85
Identities = 182/406 (44%), Positives = 248/406 (61%), Gaps = 23/406 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTDI+VR AK + Y LTDG GM LLV PNG+KYWRL YR+ GKQK LALGVYP +T
Sbjct: 1 MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFRGKQKTLALGVYPAVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHA 117
LA AR +RDEAR+ +A G+DPG+ KK+ + E + A +F+ VA EW + + WS+ +A
Sbjct: 61 LATARKKRDEAREQIAAGIDPGEAKKDARRAAEIAAANSFEAVAREWFDSQRPGWSDGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL SLE ++F +G R IAE+ + +L+ ++ VE G E A R+ QR+ A+ +Y +
Sbjct: 121 EKVLNSLEVDVFPKIGARPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM 180
Query: 178 SGLIDYNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLL 234
+G NPA ++ QH ++ IP+L+ ID+Y G +TR A+ L L
Sbjct: 181 TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL 240
Query: 235 IFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAIL 294
F+R++E+ A WSE D A+ W +PPER KMR H+VPLS QAL +L
Sbjct: 241 TFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDVL 288
Query: 295 KQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVES 354
Q++ G H +F +S NT+ AL MGY K + GHGFR +A ++L E
Sbjct: 289 AQLRALNGQHRFVFY-SVQGRSHISNNTMLYALYRMGY--KSRMTGHGFRGLAATALREL 345
Query: 355 GLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
G + RD VERQM+H RN V AAY+H AE+L ERR M+Q W D LD
Sbjct: 346 G-FGRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD 389
>ref|NP_519089.1| PROBABLE CP4-LIKE INTEGRASE PROTEIN [Ralstonia solanacearum
GMI1000]
emb|CAD14670.1| probable cp4-like integrase protein [Ralstonia solanacearum]
Length = 391
Score = 316 bits (810), Expect = 1e-84
Identities = 181/403 (44%), Positives = 240/403 (59%), Gaps = 20/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD+ R AKP DK Y L DG GM+L V PNGSKYWRL+YR GK+K LALGVYP +
Sbjct: 1 MPLTDLSARNAKPQDKPYRLADGLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKART--FKEVAIEWHGTNKK-WSEDHA 117
LA AR RD+AR+L+A G DP +K K+ + ART F+ VA EWH W +A
Sbjct: 61 LAQARTARDDARRLIAAGTDPSQARKEAKLATTTARTHTFEVVAREWHEKQSATWVPTYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL SLE ++F LG R I E+ +LA ++ VE LE ARLQQR +A+ RYAV
Sbjct: 121 TKVLHSLETDIFPDLGARPITEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAVV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +NP ++ GA + QH ++ +P L+ I Y G +TR A++ L F+
Sbjct: 181 TGRAAHNPCTDLKGAFKTAKVQHMARVQANEVPTLIKNIRGYDGDLITRIALQFMALTFV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ EL A+WSEIDFE W IP ER KMR H VPLS QA+A+L+
Sbjct: 241 RTKELIGAQWSEIDFETEEWRIPAER------------MKMREPHFVPLSWQAIALLRAA 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
++ G +F +S NT+ AL +GY ++ + GHGFR +A + L E G +
Sbjct: 289 EKMTGNRQYVF-QSPKGRTHISNNTILYALYRLGYHSR--MTGHGFRGLASTMLHEQG-F 344
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ D +ERQ++H RN VRAAY H A++L ERR M+Q WAD LD
Sbjct: 345 NPDVIERQLAHAERNKVRAAYNH-AQYLPERRRMMQHWADHLD 386
>ref|NP_900321.1| prophage CP4-like integrase [Chromobacterium violaceum ATCC 12472]
gb|AAQ58327.1| prophage CP4-like integrase [Chromobacterium violaceum ATCC 12472]
Length = 397
Score = 315 bits (807), Expect = 3e-84
Identities = 180/404 (44%), Positives = 247/404 (61%), Gaps = 21/404 (5%)
Query: 1 MALTDIKVRAAKPTD--KQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPE 58
M LTD +R AKP + K L DGG + L V PNG+KYWR+ YR++GKQK LA GVYP
Sbjct: 1 MPLTDTAIRNAKPREDGKPAKLADGGSLFLWVMPNGAKYWRMAYRFDGKQKTLAFGVYPT 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSED 115
+L DAR +R+ ARKLLA G DP KK K E+ + +F+ VA EW+ +W++D
Sbjct: 61 TSLKDAREKREAARKLLAAGTDPNAAKKEQKRERQLTVENSFEIVAREWYDKQLPRWTDD 120
Query: 116 HAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYA 175
HA R+L SL+ + F LG+ +++L +L I+ +E G +E A R+ QR +A++RYA
Sbjct: 121 HAVRILDSLKADAFPDLGKLPVSQLTAPVILDTIRKIEKRGAVETAQRVLQRISAVIRYA 180
Query: 176 VQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLI 235
+Q+G +NPA ++ GA+ + +HRPAL + E ++ + TR A+ L +L
Sbjct: 181 IQTGRAVHNPATDLTGAIRAKKVEHRPALPRGELREFYRRLAAEPLYIPTRIAMHLLMLT 240
Query: 236 FIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILK 295
F+R ELR ARW E D E + W IP ER KMR HLVPLS QAL +LK
Sbjct: 241 FVRPGELRAARWEEFDEERAEWRIPAER------------MKMREPHLVPLSRQALELLK 288
Query: 296 QIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESG 355
+++ G L+F D KPMSENT+ A+ MGY K HGFR +A + L E G
Sbjct: 289 ELRPLTGKSALLFPAVTDLKKPMSENTLGYAMGRMGY--KGTATPHGFRALASTVLNEEG 346
Query: 356 LWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+ D +E+Q++H RN VRAAY H+AE+LEERR M+QWWA+FL
Sbjct: 347 -FDPDIIEKQLAHAERNKVRAAY-HRAEYLEERRKMMQWWAEFL 388
>ref|YP_332701.1| prophage CP4-like integrase [Burkholderia pseudomallei 1710b]
gb|ABA48913.1| prophage CP4-like integrase [Burkholderia pseudomallei 1710b]
Length = 404
Score = 314 bits (805), Expect = 5e-84
Identities = 181/406 (44%), Positives = 247/406 (60%), Gaps = 23/406 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD++VR AK + Y LTDG GM LLV PNG+KYWRL YR+ GKQK LALGVYP +T
Sbjct: 1 MPLTDVQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHA 117
LA AR +RDEAR+ LA G+DPG+ KK + E + A +F+ VA EW + + WS+ +A
Sbjct: 61 LATARKKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL SLE ++F +G R IAE+ + +L+ ++ VE G E A R+ QR+ A+ +Y +
Sbjct: 121 EKVLNSLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIV 180
Query: 178 SGLIDYNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLL 234
+G NPA ++ QH ++ IP+L+ ID+Y G +TR A+ L L
Sbjct: 181 TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL 240
Query: 235 IFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAIL 294
F+R++E+ A WSE D A+ W +PPER KMR H+VPLS QAL +L
Sbjct: 241 TFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDVL 288
Query: 295 KQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVES 354
Q++ G H +F +S NT+ AL +GY K + GHGFR +A ++L E
Sbjct: 289 AQLRALNGQHRFVFY-SVQGRSHISNNTMLYALYRIGY--KSRMTGHGFRGLAATALREL 345
Query: 355 GLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
G + RD VERQM+H RN V AAY+H AE+L ERR M+Q W D LD
Sbjct: 346 G-FGRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD 389
>ref|NP_837605.1| putative integrase [Shigella flexneri 2a str. 2457T]
gb|AAP17414.1| putative integrase [Shigella flexneri 2a str. 2457T]
Length = 249
Score = 314 bits (804), Expect = 7e-84
Identities = 153/244 (62%), Positives = 187/244 (76%), Gaps = 1/244 (0%)
Query: 172 MRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIE 230
MR+AV LID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+
Sbjct: 1 MRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVL 60
Query: 231 LTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQA 290
L L +FIRSSELRFARWSEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q+
Sbjct: 61 LMLHVFIRSSELRFARWSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQS 120
Query: 291 LAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSS 350
+AILKQIK G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+
Sbjct: 121 IAILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSA 180
Query: 351 LVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPF 410
L+ESGLW++DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+
Sbjct: 181 LMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPY 240
Query: 411 EYAK 414
K
Sbjct: 241 TIGK 244
>ref|ZP_00942828.1| DNA integration/recombination/invertion protein [Ralstonia
solanacearum UW551]
gb|EAP74582.1| DNA integration/recombination/invertion protein [Ralstonia
solanacearum UW551]
Length = 394
Score = 313 bits (803), Expect = 9e-84
Identities = 179/403 (44%), Positives = 240/403 (59%), Gaps = 20/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD+ R AKP DK Y L D GM+L V PNGSKYWRL+YR GK+K LALGVYP +
Sbjct: 1 MPLTDLSARNAKPQDKPYRLADSLGMYLEVMPNGSKYWRLKYRIAGKEKRLALGVYPSVG 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKAR--TFKEVAIEWHGTNKK-WSEDHA 117
LA AR RD+AR+L+A G DP +K K+ + AR TF+ VA EWH W +A
Sbjct: 61 LAQARTARDDARRLIAAGTDPSQARKEAKLATTTARAHTFEVVAREWHEKQSATWVPTYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL SLE ++F LG R IAE+ +LA ++ VE LE ARLQQR +A+ RYA+
Sbjct: 121 TKVLHSLETDVFPDLGARPIAEITAPQMLATLRKVESRDALETVARLQQRCSAVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +NP ++ GA + QH ++ +P L+ I Y G +TR A++ L F+
Sbjct: 181 TGRAIHNPCTDLKGAFKTAKVQHMARVQANEVPTLIRNIRGYDGDLITRIALQFMALTFV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ EL A+WSEIDFE + W IP ER KMR H VPLS QA+A+L +
Sbjct: 241 RTKELIGAQWSEIDFETAEWRIPAER------------MKMRDPHFVPLSRQAIALLHEA 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
++ +F +S NT+ AL +GY ++ + GHGFR +A + L E G +
Sbjct: 289 EKMTSGRQYVF-QSPKGRTHISNNTILYALYRLGYHSR--MTGHGFRGLASTMLHEQG-F 344
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ D +ERQ++H RN VRAAY H A++L ERR M+Q WAD LD
Sbjct: 345 NPDVIERQLAHAERNKVRAAYNH-AQYLPERRRMMQHWADHLD 386
>ref|ZP_00829262.1| COG0582: Integrase [Yersinia frederiksenii ATCC 33641]
Length = 392
Score = 313 bits (803), Expect = 9e-84
Identities = 161/402 (40%), Positives = 252/402 (62%), Gaps = 19/402 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L+DI++R AKP +K Y L+DG G+ LL+ PNGSK WR +YR+ GK ++++LG Y I+
Sbjct: 1 MPLSDIQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RD ARK +A+G DP + KK +K+ Q S +F+ ++ EWH +WS +
Sbjct: 61 LAEARSKRDMARKQVADGTDPAELKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+ +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A+++ +QH P L + +P + ++ YTG +T+ A+++ +L +
Sbjct: 181 TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAVKILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ E+RFA W EID E+ +W IP ER KMR H VPLSTQ +A+ KQ+
Sbjct: 241 RTKEMRFATWQEIDLESGLWEIPAER------------MKMRRPHTVPLSTQVIALFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
G + IFIG +D KP+S+ V+ + ++GY K GHGFR + L E G +
Sbjct: 289 LPITGHYPYIFIGRNDRKKPISKEAVSQVIELLGY--KGRATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+E Q++H+ +NS+R Y H A++LE+RR MLQW+ADFL
Sbjct: 346 DSAWIELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADFL 386
>ref|ZP_00704574.1| COG0582: Integrase [Escherichia coli HS]
Length = 402
Score = 312 bits (799), Expect = 3e-83
Identities = 164/411 (39%), Positives = 252/411 (61%), Gaps = 19/411 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AAKP +K Y L DG G++L V P+GS+YWR++YR+ GK+K +A GVYP ++
Sbjct: 1 MKLNARQVDAAKPREKAYKLADGAGLYLEVVPSGSRYWRMKYRFNGKEKRMAFGVYPAVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHGTN-KKWSEDHA 117
LA AR RD+A+K LA G+DP KK +K+ + TF+ VA+EWHGT +WSE +A
Sbjct: 61 LAQARALRDDAKKKLAEGIDPSLAKKEEKLVRDVQLNNTFQAVALEWHGTKVSRWSEGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++++ ++F +G++ + E+K LL ++ +E G E A +++QR + + RYA+
Sbjct: 121 SDIIEAFNKDIFPYIGQQPVNEIKPLVLLNVLRRIESRGATEKAKKVRQRCSEVFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++ A++ +H P L ++ +P+ + YTG PL A L +L +
Sbjct: 181 TGRAEYNPAADLTSAMSGHESKHYPFLTVEELPDFFKALAGYTGSPLVVLAARLLILTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELR A WSE D E ++W IP ER KM+ HLVPLSTQAL I++Q+
Sbjct: 241 RTGELRGAFWSEFDLEKAVWEIPAER------------MKMKRPHLVPLSTQALEIVQQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
K G + L+F G +D K MSE ++N + +GY + V GHGFR + L E G +
Sbjct: 289 KVMSGQYPLVFPGRNDPRKTMSEASINQVFKRIGYTGR--VTGHGFRHTMSTILHEEG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFIS 408
+ +E Q++H+ +N++R Y H A +LE RR M+QW+AD+++ N IS
Sbjct: 346 NTAWIETQLAHVDKNAIRGTYNH-ALYLEGRREMMQWYADYINANHNSCIS 395
>ref|YP_774311.1| phage integrase family protein [Burkholderia cepacia AMMD]
gb|ABI87977.1| phage integrase family protein [Burkholderia cepacia AMMD]
Length = 404
Score = 312 bits (799), Expect = 3e-83
Identities = 180/406 (44%), Positives = 245/406 (60%), Gaps = 23/406 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTDI+VR AK + Y LTDG GM LLV PNG+KYWRL YR+ GKQK LALGVYP +T
Sbjct: 1 MPLTDIQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHA 117
LA AR +RDEAR+ +A G+DPG+ KK+ K E + A +F+ VA EW + + WS+ +A
Sbjct: 61 LATARKKRDEAREQIAAGIDPGEAKKDAKRAAEIAAANSFEAVAREWFDSQRPGWSDGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL SLE ++F +G R +AE+ + +L+ ++ VE G E A R+ QR+ A+ +Y +
Sbjct: 121 EKVLNSLEVDVFPKIGARPMAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIM 180
Query: 178 SGLIDYNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLL 234
+G NPA ++ QH ++ IP+L+ ID+Y G +TR A+ L L
Sbjct: 181 TGRCSRNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMAL 240
Query: 235 IFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAIL 294
F+R++E+ A WSE D A+ W +PPER KMR H+VPLS QAL +L
Sbjct: 241 TFVRTTEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDVL 288
Query: 295 KQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVES 354
Q++ G H +F +S NT+ L MGY K + GHGFR ++L E
Sbjct: 289 AQLRALNGQHRFVFY-SVQGRSHISNNTMLYTLYHMGY--KSRMTGHGFRGPTATALREL 345
Query: 355 GLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
G + RD VERQM+H RN V AAY+H AE+L ERR M+Q W D LD
Sbjct: 346 G-FGRDVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQVWGDHLD 389
>ref|YP_001008254.1| putative phage integrase [Yersinia enterocolitica subsp.
enterocolitica 8081]
emb|CAL14133.1| putative phage integrase [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 404
Score = 310 bits (795), Expect = 8e-83
Identities = 158/403 (39%), Positives = 250/403 (62%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AK +K Y LTDGGG++L V +G+KYWR++YRY GK+K +A GVYP ++
Sbjct: 1 MKLNARQVETAKQKEKSYKLTDGGGLYLEVSASGAKYWRMKYRYGGKEKRIAFGVYPHVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHGTNK-KWSEDHA 117
LADAR +R+ A+KLLA+G DPG+ KK +K+ Q A +F+ +A EWH +WS +
Sbjct: 61 LADARQKRETAKKLLASGTDPGETKKAEKLAQKIAMENSFELMAREWHKNKADRWSLRYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G R IA++K +LL +K +E G LE +++QR + RYA+
Sbjct: 121 EEIIDTFEKDIFPFIGRRPIADIKPMELLETLKRMEKRGALEKMRKVRQRCGEVFRYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++AGA+ + +QH P L + +P L + YTG +T+ A + +L +
Sbjct: 181 TGRAEYNPAPDLAGALQTHKKQHLPFLTAQELPYFLRDLAGYTGSIITKTATRIIMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ ELRFARW ++D + +W IPPE KM+ H+VPLS Q + KQ+
Sbjct: 241 RTQELRFARWEDLDLDKGLWHIPPEH------------MKMKRPHVVPLSIQVITAFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ L+FIG +D KP+S+ ++N + ++GY K + GHGFR + L E G +
Sbjct: 289 HPLTHHYPLVFIGRNDHRKPISKESINQVIELLGY--KGRLTGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ R+ MLQW++D++D
Sbjct: 346 NSAWIETQLAHVDKNSIRGTYNH-AQYLDGRQEMLQWYSDYMD 387
>ref|ZP_00795898.1| COG0582: Integrase [Yersinia pestis Angola]
Length = 397
Score = 310 bits (795), Expect = 8e-83
Identities = 159/402 (39%), Positives = 251/402 (62%), Gaps = 19/402 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L+D ++R AKP +K Y L+DG G+ LL+ PNGSK WR +YR+ GK ++++LG Y ++
Sbjct: 1 MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RD ARK +A+G DP + KK +K+ Q S ++F+ ++ EWH +WS +
Sbjct: 61 LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSEKSFEAISREWHKAKADRWSLGYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+ +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A+++ +QH P L + +P + ++ YTG +T+ A ++ +L +
Sbjct: 181 TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ E+RFA W EID E +W IP ER KMR H+VPLSTQ +A+ KQ+
Sbjct: 241 RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
G + IFIG +D KP+S+ TVN + ++GY K GHGFR + L E G +
Sbjct: 289 LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGY--KGRATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+E Q++H+ +NS+R Y H A++LE+RR MLQW+AD +
Sbjct: 346 DSAWIELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI 386
>ref|ZP_00422887.1| Phage integrase [Burkholderia vietnamiensis G4]
gb|EAM30473.1| Phage integrase [Burkholderia vietnamiensis G4]
Length = 400
Score = 310 bits (794), Expect = 1e-82
Identities = 182/406 (44%), Positives = 245/406 (60%), Gaps = 23/406 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP DKQ L DG G+ LL+ P G K W +YR +GK+K LALG YP+++
Sbjct: 1 MALTDLKVRTAKPADKQQKLYDGAGLLLLITPAGGKRWIFKYRIDGKEKSLALGTYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR RRD AR+ LA GVDP + KK DK + + A +F+ VA EW T + WSE +A
Sbjct: 61 LAEARARRDSAREKLAAGVDPSEAKKADKRAAQLAAASSFEIVAREWFETQRGGWSEVYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+V+ LE ++F LG R IA + +LLA I+AVE G E A R+ QR+ A+ +Y +
Sbjct: 121 GKVINCLEVDVFPRLGARPIANIDAPELLAIIRAVESRGVRETAKRVLQRSRAVFQYGIM 180
Query: 178 SGLIDYNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLL 234
+G NPA ++ S QH +++ IP+L+ ID Y+G +TR A+ L
Sbjct: 181 TGRCSRNPAADIDAETVLKKSTGVQHMARVKVTEIPQLMRDIDEYSGDLVTRLALRFMAL 240
Query: 235 IFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAIL 294
F+R+ E+ A W EID A+ W +P ER KMR H+VPLS QAL +L
Sbjct: 241 TFVRTKEMIQAEWHEIDVGAAEWRVPAER------------MKMRDPHIVPLSRQALDVL 288
Query: 295 KQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVES 354
Q+++ G +F +S NT+ AL MGY K + GHGFR +A ++L E
Sbjct: 289 AQLREINGQRRFVFY-SVQGRSHISNNTMLYALYRMGY--KSRMTGHGFRGLAATTLREL 345
Query: 355 GLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
G +SRD VERQM+H RN V AAY+H AE+L ERR M+Q WAD LD
Sbjct: 346 G-YSRDVVERQMAHAERNQVTAAYVH-AEYLPERRKMMQHWADHLD 389
>ref|NP_407466.1| putative phage integrase [Yersinia pestis CO92]
ref|NP_671345.1| integrase [Yersinia pestis KIM]
ref|NP_994679.1| putative phage integrase [Yersinia pestis biovar Microtus str.
91001]
ref|ZP_01176243.1| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275]
ref|YP_654029.1| putative phage integrase [Yersinia pestis Antiqua]
ref|YP_649607.1| phage integrase [Yersinia pestis Nepal516]
gb|AAM87596.1|AE014006_10 putative integrase [Yersinia pestis KIM]
gb|AAS63556.1| putative phage integrase [Yersinia pestis biovar Microtus str.
91001]
gb|ABG20007.1| phage integrase [Yersinia pestis Nepal516]
gb|ABG16084.1| putative phage integrase [Yersinia pestis Antiqua]
emb|CAL22609.1| putative phage integrase [Yersinia pestis CO92]
Length = 397
Score = 310 bits (793), Expect = 1e-82
Identities = 159/402 (39%), Positives = 250/402 (62%), Gaps = 19/402 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L+D ++R AKP +K Y L+DG G+ LL+ PNGSK WR +YR+ GK ++++LG Y ++
Sbjct: 1 MPLSDRQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RD ARK +A+G DP + KK +K+ Q S +F+ ++ EWH +WS +
Sbjct: 61 LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+ +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A+++ +QH P L + +P + ++ YTG +T+ A ++ +L +
Sbjct: 181 TGRAEYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ E+RFA W EID E +W IP ER KMR H+VPLSTQ +A+ KQ+
Sbjct: 241 RTKEMRFATWQEIDLEGGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
G + IFIG +D KP+S+ TVN + ++GY K GHGFR + L E G +
Sbjct: 289 LPITGHYPYIFIGLNDRKKPISKETVNQVIELLGY--KGRATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+E Q++H+ +NS+R Y H A++LE+RR MLQW+AD +
Sbjct: 346 DSAWIELQLAHVDKNSIRGTYNH-AQYLEKRREMLQWYADLI 386
>ref|NP_404505.1| integrase [Yersinia pestis CO92]
ref|NP_670570.1| phage integrase [Yersinia pestis KIM]
ref|NP_994857.1| integrase [Yersinia pestis biovar Microtus str. 91001]
ref|ZP_00797894.1| COG0582: Integrase [Yersinia pestis Angola]
ref|ZP_01177324.1| COG0582: Integrase [Yersinia pestis biovar Orientalis str. IP275]
ref|YP_649013.1| integrase [Yersinia pestis Nepal516]
gb|AAM86821.1|AE013928_6 putative phage integrase [Yersinia pestis KIM]
gb|AAS63734.1| integrase [Yersinia pestis biovar Microtus str. 91001]
gb|ABG19413.1| integrase [Yersinia pestis Nepal516]
emb|CAL19554.1| integrase [Yersinia pestis CO92]
Length = 404
Score = 309 bits (791), Expect = 2e-82
Identities = 164/403 (40%), Positives = 247/403 (61%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AKP DK Y L DGGG++LLV+ NGS+YWRL+YR+ GK+K+LALGVYP+++
Sbjct: 1 MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLALGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKV--EQSKARTFKEVAIEWHGTN-KKWSEDHA 117
LA ARV+RDEA+K++A G DP K+ +K+ + TF+ + EW+ +WSE +
Sbjct: 61 LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G R I E+K +L+A + +E G E +++QR + +YA+
Sbjct: 121 LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A A R+H P L + IPE L+ + SY+G L + A+ L +L
Sbjct: 181 TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R ELR A W+E DF+ ++W IP R KMR H+VPL QA+ ILKQI
Sbjct: 241 RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G + +F G KP+SE T+N +R +GY + GHGFR + L E G +
Sbjct: 289 QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR MLQW+AD++D
Sbjct: 346 NTAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD 387
>ref|ZP_00834743.1| COG0582: Integrase [Yersinia intermedia ATCC 29909]
Length = 395
Score = 308 bits (789), Expect = 4e-82
Identities = 165/403 (40%), Positives = 252/403 (62%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AKP +K Y L+DGGG+ LLV GS+ WRL+YR GK+K+LA GVYP+IT
Sbjct: 1 MKLNARQVDTAKPKEKPYKLSDGGGLFLLVKTTGSRCWRLKYRIAGKEKLLAFGVYPDIT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RDEA+++LA G DPG++KK +K + + TF+ +A EWH + WS+ +A
Sbjct: 61 LAEARAKRDEAKRILAVGGDPGEEKKVEKQTRKVSIDNTFEALAREWHAYKRPNWSKGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+++S E ++F +G+R IAE+K ++L ++ +E G L+ +++Q + RYA+
Sbjct: 121 DDLMESFEKDIFPYVGKRPIAEIKPLEILETLRKLEKRGVLDKMRKIRQACSQTFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G + NPA E+AGA+A H P L +P L +++Y+G +TR A L +L +
Sbjct: 181 TGRAENNPASELAGALAVQKHTHYPHLLANELPAYLNALNAYSGSTVTRIATRLLMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R++ELR A W E D + ++W +P R KMR HLVPLS Q LA+L+Q+
Sbjct: 241 RTTELRAAEWLEFDLDKAVWEVPTAR------------MKMRRPHLVPLSEQVLALLRQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G L+F G +DS KPMSE ++N ++ +GY K GHGFR + L E G +
Sbjct: 289 HEITGRFKLVFPGRNDSLKPMSEASINQVIKRIGYHGK--ATGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR MLQW+AD++D
Sbjct: 346 NTAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD 387
>ref|ZP_00826791.1| COG0582: Integrase [Yersinia mollaretii ATCC 43969]
Length = 391
Score = 308 bits (789), Expect = 4e-82
Identities = 160/402 (39%), Positives = 249/402 (61%), Gaps = 19/402 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L+DI++R AKP +K Y L+DG G+ LL+ PNGSK WR +YR+ GK ++++LG Y I+
Sbjct: 1 MPLSDIQIRRAKPQEKAYTLSDGQGLSLLIEPNGSKGWRFRYRFAGKARLMSLGTYDLIS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RD ARK +A+G DP + KK +K+ Q S +F+ ++ EWH +WS +
Sbjct: 61 LAEARSKRDVARKQVADGTDPAEVKKAEKLAQRLSSENSFEAISREWHKAKADRWSLGYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G+R IAE+ +LL ++ +E G LE +++QR + RYA+
Sbjct: 121 EEIMSTFEADIFPYIGKRPIAEITPLELLDVLQRIEKRGALEKTRKVRQRCGEVFRYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G YNPA ++A A+++ +QH P L + +P + ++ YTG +T+ A ++ +L +
Sbjct: 181 TGRAAYNPAPDLASALSTPKKQHYPFLSAEEMPYFIRDLEGYTGSIITKNAAKILMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R+ E+RFA W EID E +W IP ER KMR H+VPLSTQ +A+ KQ+
Sbjct: 241 RTKEMRFATWQEIDLENGLWEIPAER------------MKMRRPHIVPLSTQVIALFKQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
G + IFIG +D KP+S+ TVN + ++GY K GHGFR + L E G +
Sbjct: 289 LPITGHYPYIFIGRNDRKKPISKETVNQVIELLGY--KGRATGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFL 399
+E Q++H+ +NS+R Y H A++LE+RR MLQW++ L
Sbjct: 346 DSTWIELQLAHVDKNSIRGTYNH-AQYLEKRRDMLQWYSTLL 386
>ref|YP_774290.1| phage integrase family protein [Burkholderia cepacia AMMD]
gb|ABI87956.1| phage integrase family protein [Burkholderia cepacia AMMD]
Length = 404
Score = 308 bits (788), Expect = 5e-82
Identities = 181/406 (44%), Positives = 244/406 (60%), Gaps = 23/406 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MALTD+KVR AKP +KQ L DGGG+ LL+ P G K W L+YR + K+K LALG YP+++
Sbjct: 1 MALTDLKVRTAKPAEKQQKLYDGGGLLLLITPAGGKRWVLKYRVDSKEKSLALGTYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR RRD AR+ LA GVDP + KK DK + + A +F+ VA EW T + WSE +A
Sbjct: 61 LAEARARRDNAREKLAAGVDPSEAKKADKRAAQLAAASSFEIVAREWFDTQRGGWSEVYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+V+ LE ++F LG R IA + +LLA I+ VE G E A R+ QR+ A+ +Y +
Sbjct: 121 GKVISCLEVDVFPRLGARPIASIDAPELLAIIRTVESRGVRETAKRVLQRSRAVFQYGIM 180
Query: 178 SGLIDYNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLL 234
+G NPA ++ S QH ++ IP L+ ID Y+G +TR A+ L
Sbjct: 181 TGRCARNPAADIDAETVLKKSTGVQHMARVKATEIPRLMRDIDEYSGDLVTRLALRFMAL 240
Query: 235 IFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAIL 294
F+R+ E+ A W EID +A+ W +P ER KMR H+VPLS QAL +L
Sbjct: 241 TFVRTKEMIQAEWPEIDVDAAEWRVPAER------------MKMRDPHIVPLSRQALGVL 288
Query: 295 KQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVES 354
Q+++ G +F +S NT+ AL MGY K + GHGFR +A ++L E
Sbjct: 289 AQLREINGQQRFVFY-SVQGRSHISNNTMLYALYRMGY--KSRMTGHGFRGLAATALREL 345
Query: 355 GLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
G +SRD VERQM+H RN V AAY+H AE+L ERR M+Q WAD LD
Sbjct: 346 G-YSRDVVERQMAHAERNQVTAAYVH-AEYLPERREMMQHWADRLD 389
>ref|YP_071664.1| putative phage integrase. [Yersinia pseudotuberculosis IP 32953]
ref|ZP_01495694.1| hypothetical protein YpseI_02000811 [Yersinia pseudotuberculosis IP
31758]
emb|CAH22400.1| Putative phage integrase. [Yersinia pseudotuberculosis IP 32953]
Length = 404
Score = 308 bits (788), Expect = 5e-82
Identities = 163/403 (40%), Positives = 247/403 (61%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AKP DK Y L DGGG++LLV+ NGS+YWRL+YR+ GK+K+LA+GVYP+++
Sbjct: 1 MKLNARQVETAKPKDKAYKLADGGGLYLLVNTNGSRYWRLKYRFAGKEKLLAVGVYPDVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKV--EQSKARTFKEVAIEWHGTN-KKWSEDHA 117
LA ARV+RDEA+K++A G DP K+ +K+ + TF+ + EW+ +WSE +
Sbjct: 61 LAVARVKRDEAKKIVAGGGDPSQNKQQEKLARQGEATNTFEAITREWYQRRYDRWSESYR 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++ + E ++F +G R I E+K +L+A + +E G E +++QR + +YA+
Sbjct: 121 LEMMSTFESDVFPYIGYRPIKEIKPLELMAVLSKLEKRGATEKMRKVRQRCGEVWKYAII 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A A R+H P L + IPE L+ + SY+G L + A+ L +L
Sbjct: 181 TGRAEYNPAPDLASAFAPHKREHYPHLTINEIPEFLSSLASYSGSMLVKLAMRLLILTGT 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R ELR A W+E DF+ ++W IP R KMR H+VPL QA+ ILKQI
Sbjct: 241 RPGELRQAEWAEFDFDNALWEIPAVR------------MKMRRPHMVPLPDQAITILKQI 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G + +F G KP+SE T+N +R +GY + GHGFR + L E G +
Sbjct: 289 QPISGRYQFVFPGRIQHSKPISEMTLNVLIRRIGYGGR--ATGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR MLQW+AD++D
Sbjct: 346 NTAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD 387
>ref|ZP_01538078.1| phage integrase [Serratia proteamaculans 568]
gb|EAV29805.1| phage integrase [Serratia proteamaculans 568]
Length = 404
Score = 307 bits (787), Expect = 7e-82
Identities = 156/403 (38%), Positives = 249/403 (61%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD+++R +KP DK Y L+DGGG+ +L+ PNGSK WR +YR++GK KML+LG YP ++
Sbjct: 1 MPLTDLELRRSKPQDKPYTLSDGGGLSILIEPNGSKGWRFRYRFDGKPKMLSLGTYPTVS 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQS--KARTFKEVAIEWHGTNK-KWSEDHA 117
L DAR +RDEA+KL+ +G++P + +K K ++ TF+ +A EW+ + +WSE +A
Sbjct: 61 LTDARQKRDEAKKLVVSGINPSEARKQQKRDRQDVTGNTFEGIAREWYEKRRDRWSESYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
++K+ E ++F +G R IAE+K +L+ + ++ G E +++QR + +YA+
Sbjct: 121 EEMMKTFESDVFPYIGNRPIAEIKPMELMGTLSKLDERGATEKLRKVRQRCGEVWKYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G +YNPA ++A A + ++H L + +PE ++YTG + + A+ L ++
Sbjct: 181 TGRAEYNPAPDLASAFSPHKKEHYAFLSVAELPEFFRIFNTYTGSLIVKLAMRLLIITGT 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R ELR A WSE DF+ +W +PPER K R H VPLS QA++IL+Q+
Sbjct: 241 RPGELRKAEWSEFDFDNRLWEVPPER------------MKKRRPHCVPLSDQAISILEQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
K G + +F G KP+SE +N +R +GY + V GHGFR + L E G +
Sbjct: 289 KPLTGHYSFVFPGRIHHSKPISEMAMNVLVRRIGYAGR--VTGHGFRHTMSTILHEQG-Y 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR MLQW+AD++D
Sbjct: 346 NTAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD 387
>ref|YP_689484.1| putative integrase [Shigella flexneri 5 str. 8401]
gb|ABF04179.1| putative integrase [Shigella flexneri 5 str. 8401]
Length = 249
Score = 307 bits (787), Expect = 7e-82
Identities = 151/244 (61%), Positives = 185/244 (75%), Gaps = 1/244 (0%)
Query: 172 MRYAVQSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSY-TGRPLTRWAIE 230
MR+AV LID NPA + G R+H PAL L+R+PELL +I +Y GR LTR A+
Sbjct: 1 MRHAVHQELIDTNPAANLGGVTTPPVRRHYPALPLERLPELLERIGAYHQGRELTRHAVL 60
Query: 231 LTLLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQA 290
L L +FIRSSELRFAR SEIDF +WTIP REPI GV++S RG+KMR H+VPLS Q+
Sbjct: 61 LMLHVFIRSSELRFARCSEIDFTNRVWTIPATREPIIGVRYSGRGAKMRMPHIVPLSEQS 120
Query: 291 LAILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSS 350
+ ILKQIK G ++LIF GDH+ +KPM ENTVN ALRVMGYDTK ++CGHGFR MACS+
Sbjct: 121 IVILKQIKDITGNNELIFPGDHNPYKPMCENTVNKALRVMGYDTKKDICGHGFRAMACSA 180
Query: 351 LVESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLDVNRERFISPF 410
L+ESGLW++DAVERQMSH RN+VR AYIHKAEHLE R+ M+QWW+D+L+ RE + P+
Sbjct: 181 LMESGLWAKDAVERQMSHQERNTVRMAYIHKAEHLEARKAMMQWWSDYLEACRESYAPPY 240
Query: 411 EYAK 414
K
Sbjct: 241 TIGK 244
>ref|YP_419851.1| Integrase [Magnetospirillum magneticum AMB-1]
dbj|BAE49292.1| Integrase [Magnetospirillum magneticum AMB-1]
Length = 412
Score = 306 bits (785), Expect = 1e-81
Identities = 167/405 (41%), Positives = 247/405 (60%), Gaps = 18/405 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTD++++AAKP DK L DGGGM LLV P +YWRL+YR+ GK+K+LALGVYP++T
Sbjct: 1 MPLTDLQIKAAKPADKPIKLADGGGMFLLVTPQDQRYWRLKYRFGGKEKLLALGVYPDVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTN-KKWSEDHA 117
+ AR RD+A+K LANG+DP D +K K Q +F+ VA EW N W+E H+
Sbjct: 61 IKTARQLRDDAKKQLANGIDPSDARKAKKSSQLLDGPDSFENVAREWFAKNVATWAETHS 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+VL+ LE ++F +G + I + +LA + +E G + A R Q IMRYAV
Sbjct: 121 SKVLQRLESDVFPLIGTKPIGSITAPMILAVARKIEARGANDTAHRAVQNAGQIMRYAVA 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPAL-ELKRIPELLTKIDSYTGRPLTRWAIELTLLIF 236
+G + +P ++ GA+ +H AL + K + ELL D++ G + + A++L L+F
Sbjct: 181 TGRAERDPTGDLRGALPPVRHKHFAALTDPKLVGELLRAFDAFEGTVVVKAALQLAPLVF 240
Query: 237 IRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRT-THLVPLSTQALAILK 295
+R ELR A+W++ID +A W H+ + K T HLVPLSTQA+ IL+
Sbjct: 241 VRPGELRKAKWADIDLDAGSWAF-----------HASKARKGETIEHLVPLSTQAVEILR 289
Query: 296 QIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESG 355
+ Q+ G + +F G D KPMSE VN+ALR +GYDTK E+ GHGFR MA + L E
Sbjct: 290 DLHQYTGNRECLFPG-RDPRKPMSEAAVNAALRRLGYDTKTEITGHGFRAMARTILAEQL 348
Query: 356 LWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+E+Q++H +++ AY ++ +++E+RR M+Q W+D+LD
Sbjct: 349 GEDPHVIEQQLAHRVPDALGRAY-NRTKYIEQRRAMMQRWSDYLD 392
>ref|ZP_01535688.1| phage integrase [Serratia proteamaculans 568]
gb|EAV32472.1| phage integrase [Serratia proteamaculans 568]
Length = 389
Score = 306 bits (784), Expect = 1e-81
Identities = 158/401 (39%), Positives = 250/401 (62%), Gaps = 21/401 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M LTDI++R +KP +K Y L DG G+ LL++ +GSK WR +YRY GK K+++ G YP +T
Sbjct: 1 MLLTDIQIRRSKPQEKPYTLNDGQGLSLLINTDGSKGWRFRYRYAGKAKLMSFGTYPLVT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQ--SKARTFKEVAIEWHGTNK--KWSEDH 116
LA+AR +R EARK +ANG+DP KK K+ Q S +F+ ++ EWH TNK +W+ +
Sbjct: 61 LAEAREKRGEARKQVANGIDPVADKKAQKLAQKLSFENSFEAISREWH-TNKADRWTLAY 119
Query: 117 AHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAV 176
++++ E ++F +G+R IAE+K +LL ++ +E G LE +++QR + RYA+
Sbjct: 120 REEIMRTFEQDVFPHIGQRPIAEIKPLELLEVLRRIEKRGALEKTRKIRQRCGEVFRYAI 179
Query: 177 QSGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIF 236
+G +YNPA ++A A+A ++H P L + +P + ++ YTG +T+ A ++ +L
Sbjct: 180 ITGRAEYNPAPDLASALAVPKQKHHPFLSAEELPYFVKDLEGYTGSIITKNAAKIVMLTG 239
Query: 237 IRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQ 296
+R+ E+RFA W EIDFE +IW IP R KMR H+VPLSTQ + + KQ
Sbjct: 240 VRTQEMRFATWEEIDFERAIWEIPAAR------------MKMRRLHIVPLSTQVVELFKQ 287
Query: 297 IKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGL 356
++ G + IFIG ++ KP+S+ +VN + ++GY K GHGFR + L E G
Sbjct: 288 LQPITGHYPYIFIGRNNRRKPISKESVNQVIELLGY--KGRATGHGFRHTMSTILHEQGF 345
Query: 357 WSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWAD 397
S +E Q++H+ +N +R Y H A++ +R+ M+QW++D
Sbjct: 346 DSA-WIEMQLAHVDKNGIRGTYNH-AQYFAQRQSMMQWYSD 384
>ref|ZP_01213610.1| hypothetical protein Bpse17_02001318 [Burkholderia pseudomallei
1710a]
ref|ZP_01324957.1| hypothetical protein BpseP_03001183 [Burkholderia pseudomallei
Pasteur]
Length = 399
Score = 306 bits (784), Expect = 1e-81
Identities = 177/401 (44%), Positives = 243/401 (60%), Gaps = 23/401 (5%)
Query: 6 IKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADAR 65
++VR AK + Y LTDG GM LLV PNG+KYWRL YR+ GKQK LALGVYP +TLA AR
Sbjct: 1 MQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATAR 60
Query: 66 VRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLK 122
+RDEAR+ LA G+DPG+ KK + E + A +F+ VA EW + + WS+ +A +VL
Sbjct: 61 KKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYAEKVLN 120
Query: 123 SLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLID 182
SLE ++F +G R IAE+ + +L+ ++ VE G E A R+ QR+ A+ +Y + +G
Sbjct: 121 SLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIVTGRCS 180
Query: 183 YNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
NPA ++ QH ++ IP+L+ ID+Y G +TR A+ L L F+R+
Sbjct: 181 RNPAADIDAQTVLKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMALTFVRT 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
+E+ A WSE D A+ W +PPER KMR H+VPLS QAL +L Q++
Sbjct: 241 TEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDVLAQLRA 288
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G H +F +S NT+ AL +GY K + GHGFR +A ++L E G + R
Sbjct: 289 LNGQHRFVFY-SVQGRSHISNNTMLYALYRIGY--KSRMTGHGFRGLAATALRELG-FGR 344
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
D VERQM+H RN V AAY+H AE+L ERR M+Q W D LD
Sbjct: 345 DVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD 384
>ref|ZP_00822421.1| COG0582: Integrase [Yersinia bercovieri ATCC 43970]
Length = 395
Score = 306 bits (783), Expect = 2e-81
Identities = 164/403 (40%), Positives = 251/403 (62%), Gaps = 19/403 (4%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
M L +V AKP +K Y L+DGGG+ LLV GS+ WRL+YR GK+K+LA GV+P+IT
Sbjct: 1 MKLNARQVDTAKPKEKPYKLSDGGGLFLLVKTTGSRCWRLKYRIAGKEKLLAFGVFPDIT 60
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKA--RTFKEVAIEWHGTNK-KWSEDHA 117
LA+AR +RDEA+ +LA G DPG++KK +K + + TF+ +A EWH + WS+ +A
Sbjct: 61 LAEARAKRDEAKHILAVGGDPGEEKKVEKQTRKVSIDNTFEALAREWHAYKRPNWSKGYA 120
Query: 118 HRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQ 177
+++S E ++F +G+R IAE+K ++L ++ +E G L+ +++Q + RYA+
Sbjct: 121 DDLMESFEKDIFPYVGKRPIAEIKPLEILETLRKLEKRGVLDKMRKIRQACSQTFRYAIV 180
Query: 178 SGLIDYNPAQEMAGAVASCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFI 237
+G + NPA E+AGA+A H P L +P L +++Y+G +TR A L +L +
Sbjct: 181 TGRAENNPASELAGALAVQKHTHYPHLLANELPAYLNALNAYSGSTVTRIATRLLMLTGV 240
Query: 238 RSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQI 297
R++ELR A W E D + ++W +P R KMR HLVPLS Q LA+L+Q+
Sbjct: 241 RTTELRAAEWLEFDLDKAVWEVPTAR------------MKMRRPHLVPLSVQVLALLRQL 288
Query: 298 KQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLW 357
+ G L+F G +DS KPMSE ++N ++ +GY K GHGFR + L E G +
Sbjct: 289 HEITGRFKLVFPGRNDSLKPMSEASINQVIKRIGYHGK--ATGHGFRHTMSTILHEQG-F 345
Query: 358 SRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
+ +E Q++H+ +NS+R Y H A++L+ RR MLQW+AD++D
Sbjct: 346 NTAWIETQLAHVDKNSIRGTYNH-AQYLDGRREMLQWYADYMD 387
>ref|ZP_01317570.1| hypothetical protein Bpse1_03003064 [Burkholderia pseudomallei
1655]
Length = 399
Score = 305 bits (780), Expect = 4e-81
Identities = 177/401 (44%), Positives = 243/401 (60%), Gaps = 23/401 (5%)
Query: 6 IKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEITLADAR 65
++VR AK + Y LTDG GM LLV PNG+KYWRL YR+ GKQK LALGVYP +TLA AR
Sbjct: 1 MQVRNAKASAAPYKLTDGNGMFLLVQPNGAKYWRLSYRFLGKQKTLALGVYPAVTLATAR 60
Query: 66 VRRDEARKLLANGVDPGDKKKNDK--VEQSKARTFKEVAIEWHGTNKK-WSEDHAHRVLK 122
+RDEAR+ LA G+DPG+ KK + E + A +F+ VA EW + + WS+ +A +VL
Sbjct: 61 KKRDEAREQLAAGIDPGEAKKEARRTAEIAAANSFEAVAREWFDSQRPGWSDGYAEKVLN 120
Query: 123 SLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMRYAVQSGLID 182
SLE ++F +G R IAE+ + +L+ ++ VE G E A R+ QR+ A+ +Y + +G
Sbjct: 121 SLEVDVFPKIGPRPIAEIDSPQMLSIVREVEARGVRETAKRILQRSRAVFQYGIVTGRCS 180
Query: 183 YNPAQEMAGAVA---SCNRQHRPALELKRIPELLTKIDSYTGRPLTRWAIELTLLIFIRS 239
NPA ++ A QH ++ IP+L+ ID+Y G +TR A+ L L +R+
Sbjct: 181 RNPAADIDAQTALKKGPGVQHMARVKATEIPQLMRDIDAYQGDLVTRLALRLMALTCVRT 240
Query: 240 SELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALAILKQIKQ 299
+E+ A WSE D A+ W +PPER KMR H+VPLS QAL +L Q++
Sbjct: 241 TEMIRAEWSEFDEAAAEWRVPPER------------MKMRDPHIVPLSRQALDVLAQLRA 288
Query: 300 FYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLVESGLWSR 359
G H +F +S NT+ AL +GY K + GHGFR +A ++L E G + R
Sbjct: 289 LNGQHRFVFY-SVQGRSHISNNTMLYALYRIGY--KSRMTGHGFRGLAATALRELG-FGR 344
Query: 360 DAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
D VERQM+H RN V AAY+H AE+L ERR M+Q W D LD
Sbjct: 345 DVVERQMAHAERNQVTAAYVH-AEYLPERRRMMQAWGDHLD 384
>ref|YP_363948.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
emb|CAJ23894.1| phage-related integrase [Xanthomonas campestris pv. vesicatoria
str. 85-10]
Length = 408
Score = 304 bits (779), Expect = 6e-81
Identities = 174/408 (42%), Positives = 249/408 (61%), Gaps = 24/408 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYR--YEGKQKMLALGVYPE 58
M LTD +R KP L DGGG++LL+ P+G+++WR YR GK+ L+LG YP+
Sbjct: 1 MPLTDTAIRKTKPGAVPLKLRDGGGLYLLMRPDGARWWRWDYRRPVTGKRNTLSLGTYPD 60
Query: 59 ITLADARVRRDEARKLLANGVDPGDKKKNDKVEQSK-----ARTFKEVAIEWHGTNKKWS 113
LADAR +RD ARKLLA GVDPG+++K K E++ TF+ VA EW + +
Sbjct: 61 TGLADAREKRDAARKLLAAGVDPGEQRKQAKQERAALVDAAGETFEVVAREWMA-RQTVA 119
Query: 114 EDHAHRVLKSLEDNLFAALGERNIAELKTRDLLAPIKAVEMSGRLEVAARLQQRTTAIMR 173
A + LE LF +G R I E+ R+LL ++ +E +G+LE AAR + + + R
Sbjct: 120 RVTAEKNRWLLETFLFPEIGSRPIGEITPRELLDALRKIEATGKLETAARAKIKAGQVFR 179
Query: 174 YAVQSGLIDYNPAQEMAGAVASCNRQHRPAL-ELKRIPELLTKIDSYTGRPLTRWAIELT 232
YA+ G + +P + GA+ + +H A+ E +I +LL I+ ++G+P+T A++L
Sbjct: 180 YAMLEGKAEIDPTASLRGALKAAKARHHAAVTEPAKIGQLLRAIEGFSGQPVTHAALKLA 239
Query: 233 LLIFIRSSELRFARWSEIDFEASIWTIPPEREPIPGVKHSHRGSKMRTTHLVPLSTQALA 292
L+F+R ELR A W+EID +A++W I PER KM+ HLVPLS+QA+A
Sbjct: 240 PLVFVRPGELRAAEWAEIDLDAAMWRIRPER------------MKMKAAHLVPLSSQAVA 287
Query: 293 ILKQIKQFYGAHDLIFIGDHDSHKPMSENTVNSALRVMGYDTKVEVCGHGFRTMACSSLV 352
IL+ + G +F G ++PMSENTVN+ALR +GY E+ GHGFR+MA + L
Sbjct: 288 ILRDLHALTGGGHHVFPGLR-PNRPMSENTVNAALRALGYSGD-EMTGHGFRSMAATRLN 345
Query: 353 ESGLWSRDAVERQMSHMARNSVRAAYIHKAEHLEERRLMLQWWADFLD 400
E G W+ DAVERQ++H N VR AY H A++L ER M+Q WAD+LD
Sbjct: 346 ELG-WNADAVERQLAHAETNKVREAYTHAAQYLHERVRMMQAWADYLD 392
>ref|NP_106945.1| symbiosis island integrase [Mesorhizobium loti MAFF303099]
dbj|BAB52731.1| symbiosis island integrase [Mesorhizobium loti MAFF303099]
Length = 441
Score = 303 bits (777), Expect = 9e-81
Identities = 171/404 (42%), Positives = 244/404 (60%), Gaps = 22/404 (5%)
Query: 1 MALTDIKVRAAKPTDKQYXLTDGGGMHLLVHPNGSKYWRLQYRYEGKQKMLALGVYPEIT 60
MAL+D+K R A+P K L+DGGG+ L V P GS+ WRL YR+ GKQK+LALG YP I+
Sbjct: 6 MALSDVKCRNARPASKLVKLSDGGGLQLWVQPTGSRLWRLAYRFGGKQKLLALGSYPLIS 65
Query: 61 LADARVRRDEARKLLANGVDPGDKKKNDKVEQSKARTFKEVAIEWHGTNKKWSEDHAHRV 120
LA+AR RD A++LL G+DP ++K+ K S TF+ +A ++ KK E A R
Sbjct: 66 LAEAREARDTAKRLLLRGIDPAQERKSQKA--SAEDTFRSIAEDYVDKLK
