Blast performed on February-12-2007
BLASTP 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: nr_env 
           5,549,519 sequences; 1,762,256,069 total letters

Query= EG11786 yfiF 
         (345 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_311474.1|  hypothetical protein ECs3447 [Escherichia ...   705   0.0   
ref|ZP_00698246.1|  COG0566: rRNA methylases [Shigella boydi...   705   0.0   
ref|ZP_00922261.1|  COG0566: rRNA methylases [Shigella dysen...   704   0.0   
ref|ZP_00700601.1|  COG0566: rRNA methylases [Escherichia co...   704   0.0   
ref|NP_838153.1|  hypothetical protein S2816 [Shigella flexn...   702   0.0   
ref|YP_690045.1|  hypothetical protein SFV_2644 [Shigella fl...   701   0.0   
ref|YP_670473.1|  hypothetical tRNA/rRNA methyltransferase Y...   701   0.0   
ref|ZP_00721435.1|  COG0566: rRNA methylases [Escherichia co...   701   0.0   
ref|NP_289139.1|  hypothetical protein Z3865 [Escherichia co...   700   0.0   
ref|YP_541894.1|  hypothetical tRNA/rRNA methyltransferase Y...   699   0.0   
ref|YP_408983.1|  hypothetical protein SBO_2613 [Shigella bo...   697   0.0   
ref|NP_754987.1|  Hypothetical tRNA/rRNA methyltransferase y...   697   0.0   
ref|NP_708432.2|  hypothetical protein SF2643 [Shigella flex...   689   0.0   
ref|NP_457123.1|  putative RNA methyltransferase [Salmonella...   622   e-177 
ref|YP_149604.1|  putative RNA methyltransferase [Salmonella...   617   e-175 
ref|ZP_01591131.1|  tRNA/rRNA methyltransferase (SpoU) [Ente...   568   e-160 
ref|ZP_01538143.1|  tRNA/rRNA methyltransferase (SpoU) [Serr...   456   e-126 
emb|CAC44352.1|  YfiF protein [Erwinia chrysanthemi]              452   e-125 
ref|ZP_00827975.1|  COG0566: rRNA methylases [Yersinia frede...   448   e-124 
ref|ZP_00823891.1|  COG0566: rRNA methylases [Yersinia molla...   446   e-124 
ref|ZP_00821026.1|  COG0566: rRNA methylases [Yersinia berco...   446   e-123 
ref|ZP_00833768.1|  COG0566: rRNA methylases [Yersinia inter...   444   e-123 
ref|YP_001007418.1|  putative trna/rRNA methyltransferase [Y...   440   e-122 
ref|NP_668251.1|  hypothetical protein y0920 [Yersinia pesti...   440   e-122 
ref|NP_406739.1|  putative tRNA/rRNA methyltransferase [Yers...   440   e-122 
ref|YP_069395.1|  putative tRNA/rRNA methyltransferase [Yers...   440   e-122 
ref|ZP_00795424.1|  COG0566: rRNA methylases [Yersinia pesti...   439   e-121 
ref|NP_928585.1|  hypothetical protein plu1274 [Photorhabdus...   437   e-121 
ref|ZP_01497738.1|  hypothetical protein YpseI_02002907 [Yer...   436   e-121 
ref|YP_051604.1|  putative tRNA/rRNA methyltransferase [Erwi...   434   e-120 
ref|YP_455588.1|  hypothetical protein SG1908 [Sodalis gloss...   389   e-106 
gb|EAJ43787.1|  unknown [environmental sequence]                  367   e-100 
ref|YP_928398.1|  putative tRNA/rRNA methyltransferase [Shew...   244   7e-63 
ref|YP_853715.1|  tRNA/rRNA methyltransferase YfiF [Escheric...   235   3e-60 
gb|EAG57629.1|  unknown [environmental sequence]                  234   5e-60 
ref|ZP_00155426.2|  COG0566: rRNA methylases [Haemophilus in...   218   4e-55 
ref|NP_438585.1|  rRNA methylase [Haemophilus influenzae Rd ...   214   7e-54 
ref|NP_246796.1|  hypothetical protein PM1857 [Pasteurella m...   213   2e-53 
ref|ZP_00156260.2|  COG0566: rRNA methylases [Haemophilus in...   213   2e-53 
ref|YP_087440.1|  SpoU protein [Mannheimia succiniciproducen...   206   2e-51 
ref|ZP_00134616.1|  COG0566: rRNA methylases [Actinobacillus...   204   4e-51 
ref|ZP_00132468.2|  COG0566: rRNA methylases [Haemophilus so...   199   1e-49 
gb|EAH33449.1|  unknown [environmental sequence]                  197   5e-49 
ref|YP_718507.1|  tRNA/rRNA methyltransferase [Haemophilus s...   196   2e-48 
ref|NP_873014.1|  conserved putative tRNA/rRNA methyltransfe...   191   4e-47 
ref|ZP_00733168.1|  rRNA methylases [Actinobacillus succinog...   182   3e-44 
ref|ZP_01645038.1|  RNA methyltransferase, TrmH family, grou...   178   4e-43 
gb|EAG36624.1|  unknown [environmental sequence]                  177   8e-43 
ref|YP_365165.1|  tRNA/rRNA methyltransferase [Xanthomonas c...   174   8e-42 
ref|NP_638511.1|  tRNA/rRNA methyltransferase [Xanthomonas c...   173   1e-41 
ref|NP_643623.1|  tRNA/rRNA methyltransferase [Xanthomonas a...   172   2e-41 
ref|YP_242094.1|  tRNA/rRNA methyltransferase [Xanthomonas c...   172   3e-41 
ref|YP_202027.1|  tRNA/rRNA methyltransferase [Xanthomonas o...   169   3e-40 
ref|YP_452219.1|  tRNA/rRNA methyltransferase [Xanthomonas o...   169   3e-40 
gb|EAK20017.1|  unknown [environmental sequence]                  152   2e-35 
gb|EAG53376.1|  unknown [environmental sequence]                  123   2e-26 
ref|YP_114407.1|  RNA methyltransferase, TrmH family, group ...   105   3e-21 
ref|YP_377312.1|  RNA methyltransferase TrmH, group 3 [Synec...   104   6e-21 
ref|ZP_01640236.1|  RNA methyltransferase TrmH, group 3 [Pse...   103   2e-20 
ref|YP_693912.1|  RNA methyltransferase, TrmH family, group ...   102   3e-20 
ref|ZP_00902910.1|  RNA methyltransferase TrmH, group 3 [Pse...   102   4e-20 
ref|YP_340969.1|  Gm2251 methyltransferase of 23S rRNA [Pseu...   101   5e-20 
ref|YP_610360.1|  RNA methyltransferase, TrmH family, group ...   101   7e-20 
ref|YP_384315.1|  RNA methyltransferase TrmH, group 3 [Geoba...   101   7e-20 
ref|ZP_01297365.1|  hypothetical protein PaerP_01000864 [Pse...   100   2e-19 
ref|NP_746983.1|  RNA methyltransferase, TrmH family, group ...   100   2e-19 
ref|ZP_01526054.1|  RNA methyltransferase, TrmH family, grou...   100   2e-19 
ref|NP_253623.1|  probable rRNA methylase [Pseudomonas aerug...   100   2e-19 
ref|ZP_00966061.1|  COG0566: rRNA methylases [Pseudomonas ae...    99   3e-19 
ref|YP_793404.1|  putative RNA methyltransferase, TrmH famil...    98   6e-19 
ref|YP_722010.1|  RNA methyltransferase, TrmH family, group ...    97   1e-18 
ref|YP_381465.1|  RNA methyltransferase TrmH, group 3 [Synec...    97   2e-18 
ref|ZP_01110324.1|  Gm2251 methyltransferase of 23S rRNA [Al...    97   2e-18 
ref|ZP_00418500.1|  RNA methyltransferase TrmH, group 3 [Azo...    96   2e-18 
ref|ZP_01125854.1|  RNA methyltransferase, TrmH family, grou...    96   3e-18 
ref|ZP_01614161.1|  23S rRNA (Gm2251)-methyltransferase [Alt...    96   4e-18 
ref|YP_422512.1|  rRNA methylase [Magnetospirillum magneticu...    96   4e-18 
ref|ZP_01313434.1|  RNA methyltransferase TrmH, group 3 [Des...    95   5e-18 
ref|ZP_01624902.1|  RNA methyltransferase TrmH, group 3 [mar...    95   7e-18 
ref|YP_113068.1|  RNA methyltransferase, TrmH family [Methyl...    95   7e-18 
ref|YP_233688.1|  RNA methyltransferase TrmH, group 3 [Pseud...    95   7e-18 
ref|YP_421836.1|  rRNA methylase [Magnetospirillum magneticu...    95   7e-18 
ref|ZP_00814670.1|  RNA methyltransferase TrmH, group 3 [She...    95   7e-18 
ref|ZP_01432728.1|  RNA methyltransferase TrmH, group 3 [She...    94   9e-18 
ref|YP_432983.1|  rRNA methylases [Hahella chejuensis KCTC 2...    94   1e-17 
ref|YP_855245.1|  RNA methyltransferase, TrmH family, group ...    94   1e-17 
ref|NP_900819.1|  probable RNA methyltransferase [Chromobact...    94   1e-17 
ref|YP_516683.1|  hypothetical protein DSY0450 [Desulfitobac...    94   1e-17 
ref|YP_631271.1|  RNA methyltransferase, TrmH family, group ...    93   2e-17 
ref|NP_794667.1|  RNA methyltransferase, TrmH family, group ...    93   2e-17 
ref|ZP_01085047.1|  tRNA/rRNA methyltransferase (SpoU):RNA m...    93   2e-17 
ref|ZP_00584345.1|  RNA methyltransferase TrmH, group 3 [She...    93   2e-17 
ref|NP_973311.1|  RNA methyltransferase, TrmH family [Trepon...    93   2e-17 
sp|Q9JUU8|RLMB_NEIMA  23S rRNA (guanosine-2'-O-)-methyltrans...    93   2e-17 
ref|NP_894483.1|  tRNA/rRNA methyltransferase (SpoU):RNA met...    93   2e-17 
ref|NP_283895.1|  RNA methylase [Neisseria meningitidis Z2491]     93   2e-17 
ref|YP_868342.1|  RNA methyltransferase, TrmH family, group ...    93   2e-17 
ref|ZP_01621406.1|  tRNA/rRNA methyltransferase [Lyngbya sp....    92   3e-17 
ref|ZP_01492840.1|  RNA methyltransferase TrmH, group 3 [Pol...    92   3e-17 
ref|NP_927127.1|  tRNA/rRNA methyltransferase [Gloeobacter v...    92   3e-17 
ref|NP_719465.1|  RNA methyltransferase, TrmH family, group ...    92   3e-17 
ref|ZP_00053931.1|  COG0566: rRNA methylases [Magnetospirill...    92   3e-17 
gb|EAK43875.1|  unknown [environmental sequence]                   92   4e-17 
ref|YP_974980.1|  putative RNA methylase [Neisseria meningit...    92   4e-17 
ref|ZP_01502138.1|  RNA methyltransferase, TrmH family, grou...    92   4e-17 
ref|NP_273970.1|  RNA methyltransferase, TrmH family [Neisse...    92   4e-17 
ref|YP_620947.1|  RNA methyltransferase TrmH, group 3 [Burkh...    92   4e-17 
ref|YP_272875.1|  RNA methyltransferase, TrmH family, group ...    92   6e-17 
ref|YP_257720.1|  RNA methyltransferase, TrmH family, group ...    92   6e-17 
ref|NP_662510.1|  SpoU rRNA methylase family protein [Chloro...    92   6e-17 
ref|YP_001002242.1|  RNA methyltransferase, TrmH family, gro...    92   6e-17 
ref|ZP_01571188.1|  RNA methyltransferase, TrmH family, grou...    91   7e-17 
ref|ZP_01562986.1|  RNA methyltransferase, TrmH family, grou...    91   7e-17 
ref|ZP_01388313.1|  RNA methyltransferase TrmH, group 3 [Geo...    91   7e-17 
ref|NP_952513.1|  RNA methyltransferase, TrmH family, group ...    91   7e-17 
ref|ZP_01143169.1|  RNA methyltransferase TrmH, group 3 [Geo...    91   7e-17 
ref|YP_959650.1|  RNA methyltransferase, TrmH family, group ...    91   7e-17 
gb|EAH65273.1|  unknown [environmental sequence]                   91   9e-17 
ref|YP_001017589.1|  rRNA methylase [Prochlorococcus marinus...    91   9e-17 
ref|ZP_01510223.1|  RNA methyltransferase, TrmH family, grou...    91   9e-17 
ref|YP_736743.1|  RNA methyltransferase, TrmH family, group ...    91   9e-17 
ref|YP_558485.1|  RNA methyltransferase TrmH, group 3 [Burkh...    91   9e-17 
ref|YP_735388.1|  RNA methyltransferase, TrmH family, group ...    91   9e-17 
gb|AAO52200.1|  similar to Dictyostelium discoideum (Slime m...    91   1e-16 
ref|YP_346266.1|  RNA methyltransferase TrmH, group 3 [Pseud...    91   1e-16 
ref|XP_643609.1|  hypothetical protein DDBDRAFT_0217723 [Dic...    91   1e-16 
ref|YP_572943.1|  RNA methyltransferase TrmH, group 3 [Chrom...    90   2e-16 
ref|YP_356114.1|  rRNA methyltranferase [Pelobacter carbinol...    90   2e-16 
ref|YP_368928.1|  RNA methyltransferase TrmH, group 3 [Burkh...    90   2e-16 
ref|NP_897122.1|  possible tRNA/rRNA methyltransferase [Syne...    90   2e-16 
ref|ZP_01080081.1|  tRNA/rRNA methyltransferase (SpoU):RNA m...    90   2e-16 
ref|YP_901349.1|  RNA methyltransferase, TrmH family, group ...    90   2e-16 
gb|EAK13227.1|  unknown [environmental sequence]                   90   2e-16 
ref|NP_458805.1|  probable tRNA/rRNA methyltransferase [Salm...    90   2e-16 
gb|EAH94964.1|  unknown [environmental sequence]                   89   3e-16 
sp|Q9RED7|RLMB_BURSP  23S rRNA (guanosine-2'-O-)-methyltrans...    89   3e-16 
ref|ZP_00661687.1|  RNA methyltransferase TrmH, group 3 [Pro...    89   3e-16 
ref|YP_752029.1|  RNA methyltransferase, TrmH family, group ...    89   3e-16 
gb|EAI64522.1|  unknown [environmental sequence]                   89   4e-16 
ref|YP_928938.1|  RNA methyltransferase TrmH, group 3 [Shewa...    89   4e-16 
ref|YP_250092.1|  putative rRNA methylase [Corynebacterium j...    89   4e-16 
ref|YP_864348.1|  RNA methyltransferase, TrmH family, group ...    89   4e-16 
ref|YP_157686.1|  tRNA/rRNA methyltransferase protein [Azoar...    89   5e-16 
ref|ZP_01605626.1|  RNA methyltransferase, TrmH family, grou...    88   6e-16 
ref|ZP_01448406.1|  hypothetical protein OM2255_16034 [alpha...    88   6e-16 
ref|NP_463230.1|  putative tRNA/rRNA methyltransferase [Salm...    88   6e-16 
ref|ZP_01133554.1|  Gm2251 methyltransferase of 23S rRNA [Ps...    88   6e-16 
ref|ZP_01668572.1|  RNA methyltransferase, TrmH family, grou...    88   8e-16 
ref|YP_526529.1|  Tyrosyl-tRNA synthetase, class Ib [Sacchar...    88   8e-16 
ref|YP_427787.1|  RNA methyltransferase TrmH, group 3 [Rhodo...    88   8e-16 
ref|YP_380025.1|  RNA methyltransferase TrmH, group 3 [Chlor...    88   8e-16 
ref|YP_375513.1|  RNA methyltransferase TrmH, group 3 [Pelod...    88   8e-16 
ref|YP_271263.1|  RNA methyltransferase, TrmH family, group ...    88   8e-16 
ref|YP_773340.1|  RNA methyltransferase, TrmH family, group ...    87   1e-15 
ref|ZP_00426981.1|  RNA methyltransferase TrmH, group 3 [Bur...    87   1e-15 
ref|ZP_00133380.2|  COG0566: rRNA methylases [Haemophilus so...    87   1e-15 
ref|NP_404029.1|  putative methylase [Yersinia pestis CO92] ...    87   1e-15 
ref|YP_561527.1|  RNA methyltransferase TrmH, group 3 [Shewa...    87   1e-15 
ref|YP_391755.1|  RNA methyltransferase TrmH, group 3 [Thiom...    87   1e-15 
ref|ZP_00833071.1|  COG0566: rRNA methylases [Yersinia inter...    87   1e-15 
ref|ZP_01538479.1|  RNA methyltransferase, TrmH family, grou...    87   2e-15 
ref|ZP_01465617.1|  RNA methyltransferase, TrmH family, grou...    87   2e-15 
ref|YP_410526.1|  hypothetical protein SBO_4276 [Shigella bo...    87   2e-15 
ref|NP_840438.1|  putative tRNA/rRNA methyltransferase [Nitr...    87   2e-15 
ref|NP_485202.1|  tRNA/rRNA methyltransferase [Nostoc sp. PC...    87   2e-15 
ref|ZP_00825138.1|  COG0566: rRNA methylases [Yersinia molla...    87   2e-15 
ref|YP_001004760.1|  putative methylase [Yersinia enterocoli...    86   2e-15 
ref|ZP_01307074.1|  RNA methyltransferase, TrmH family, grou...    86   2e-15 
ref|NP_218494.1|  hypothetical protein TP0054 [Treponema pal...    86   2e-15 
ref|ZP_01123938.1|  hypothetical protein WH7805_02022 [Synec...    86   2e-15 
ref|ZP_00820320.1|  COG0566: rRNA methylases [Yersinia berco...    86   2e-15 
ref|YP_932444.1|  tRNA/rRNA methyltransferase [Azoarcus sp. ...    86   3e-15 
ref|ZP_01615017.1|  RNA methyltransferase, TrmH family, grou...    86   3e-15 
ref|ZP_00839206.1|  RNA methyltransferase TrmH, group 3 [She...    86   3e-15 
ref|YP_590080.1|  RNA methyltransferase TrmH, group 3 [Acido...    86   4e-15 
ref|YP_464793.1|  RNA methyltransferase TrmH, group 3 [Anaer...    86   4e-15 
ref|NP_246892.1|  hypothetical protein PM1953 [Pasteurella m...    86   4e-15 
ref|ZP_00699453.1|  COG0566: rRNA methylases [Shigella boydi...    86   4e-15 
ref|YP_605485.1|  RNA methyltransferase TrmH, group 3 [Deino...    86   4e-15 
ref|YP_877180.1|  RNA methyltransferase, TrmH family, group ...    85   5e-15 
ref|YP_333368.1|  RNA methyltransferase, TrmH family, group ...    85   5e-15 
ref|YP_087666.1|  SpoU protein [Mannheimia succiniciproducen...    85   5e-15 
ref|NP_441742.1|  hypothetical protein slr0955 [Synechocysti...    85   5e-15 
ref|ZP_01102166.1|  23S rRNA (guanosine-2'-O-)-methyltransfe...    85   5e-15 
ref|ZP_01005597.1|  rRNA methylase [Prochlorococcus marinus ...    85   5e-15 
ref|ZP_00829514.1|  COG0566: rRNA methylases [Yersinia frede...    85   5e-15 
ref|YP_108472.1|  putative tRNA/rRNA methyltransferase [Burk...    85   5e-15 
ref|NP_232226.1|  RNA methyltransferase, TrmH family [Vibrio...    85   5e-15 
ref|ZP_01594445.1|  RNA methyltransferase, TrmH family, grou...    85   7e-15 
ref|ZP_01543499.1|  RNA methyltransferase, TrmH family, grou...    85   7e-15 
ref|YP_479015.1|  RNA methyltransferase, TrmH family, group ...    85   7e-15 
ref|YP_443037.1|  RNA methyltransferase, TrmH family, group ...    85   7e-15 
ref|ZP_00757284.1|  COG0566: rRNA methylases [Vibrio cholera...    85   7e-15 
ref|YP_747826.1|  RNA methyltransferase, TrmH family, group ...    85   7e-15 
ref|ZP_01471878.1|  hypothetical protein RS9916_28824 [Synec...    84   9e-15 
ref|YP_730838.1|  RNA methyltransferase, TrmH family, group ...    84   9e-15 
ref|NP_294471.1|  RNA methyltransferase, TrmH family [Deinoc...    84   9e-15 
ref|NP_940301.1|  SpoU rRNA Methylase family protein [Coryne...    84   9e-15 
ref|ZP_00944992.1|  23S rRNA Gm2251 methyltransferase [Ralst...    84   9e-15 
gb|EAI25046.1|  unknown [environmental sequence]                   84   1e-14 
ref|ZP_01588567.1|  RNA methyltransferase, TrmH family, grou...    84   1e-14 
ref|YP_716646.1|  tRNA/RRNA methyltransferase [Frankia alni ...    84   1e-14 
ref|YP_944701.1|  RNA methyltransferase, TrmH family, group ...    84   1e-14 
ref|YP_296279.1|  RNA methyltransferase TrmH, group 3 [Ralst...    84   1e-14 
ref|YP_324906.1|  RNA methyltransferase TrmH, group 3 [Anaba...    84   1e-14 
ref|ZP_00733474.1|  rRNA methylases [Actinobacillus succinog...    84   1e-14 
ref|ZP_00573317.1|  RNA methyltransferase TrmH, group 3 [Fra...    84   1e-14 
ref|ZP_00488475.1|  COG0566: rRNA methylases [Burkholderia p...    84   1e-14 
ref|NP_290810.1|  hypothetical protein Z5787 [Escherichia co...    84   1e-14 
gb|EAX33789.1|  RNA methyltransferase, TrmH family, group 3 ...    84   2e-14 
ref|YP_619448.1|  tRNA/rRNA methyltransferase [Lactobacillus...    84   2e-14 
ref|ZP_01299277.1|  hypothetical protein CburD_01000958 [Cox...    84   2e-14 
ref|NP_601840.1|  rRNA methylase [Corynebacterium glutamicum...    84   2e-14 
ref|NP_819993.1|  RNA methyltransferase, TrmH family, group ...    84   2e-14 
ref|ZP_01167500.1|  hypothetical protein MED92_00984 [Oceano...    84   2e-14 
ref|ZP_01114508.1|  hypothetical protein MED297_12747 [Reine...    84   2e-14 
ref|ZP_00991941.1|  RNA methyltransferase, TrmH family [Vibr...    84   2e-14 
ref|YP_813479.1|  rRNA methylase [Lactobacillus delbrueckii ...    84   2e-14 
ref|NP_760233.1|  rRNA methylase [Vibrio vulnificus CMCP6] >...    83   2e-14 
ref|ZP_01066522.1|  RNA methyltransferase, TrmH family prote...    83   2e-14 
gb|EAI93837.1|  unknown [environmental sequence]                   83   3e-14 
gb|EAD68443.1|  unknown [environmental sequence]                   83   3e-14 
ref|YP_342279.1|  RNA methyltransferase TrmH, group 3 [Nitro...    83   3e-14 
ref|YP_156323.1|  RRNA methylase, SpoU family [Idiomarina lo...    83   3e-14 
ref|YP_431306.1|  RNA methyltransferase TrmH, group 3 [Moore...    83   3e-14 
ref|NP_519350.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTE...    83   3e-14 
ref|NP_439020.1|  hypothetical protein HI0860 [Haemophilus i...    83   3e-14 
ref|ZP_00589917.1|  RNA methyltransferase TrmH, group 3 [Pel...    83   3e-14 
ref|ZP_01385344.1|  RNA methyltransferase TrmH, group 3 [Chl...    82   3e-14 
ref|YP_055093.1|  putative tRNA/rRNA methyltransferase [Prop...    82   3e-14 
ref|YP_412639.1|  RNA methyltransferase TrmH, group 3 [Nitro...    82   3e-14 
ref|YP_248566.1|  probable tRNA/rRNA methyltransferase [Haem...    82   3e-14 
ref|NP_641901.1|  tRNA/rRNA methyltransferase [Xanthomonas a...    82   3e-14 
ref|ZP_01484246.1|  hypothetical protein VchoV5_02003181 [Vi...    82   3e-14 
ref|ZP_00512043.1|  RNA methyltransferase TrmH, group 3 [Chl...    82   3e-14 
ref|YP_911052.1|  RNA methyltransferase, TrmH family, group ...    82   3e-14 
ref|ZP_01519887.1|  RNA methyltransferase, TrmH family, grou...    82   4e-14 
ref|ZP_01310056.1|  hypothetical protein CburR_01000902 [Cox...    82   4e-14 
ref|ZP_01217104.1|  RNA methyltransferase, TrmH family, grou...    82   4e-14 
ref|YP_405787.1|  hypothetical protein SDY_4409 [Shigella dy...    82   4e-14 
ref|YP_454024.1|  hypothetical protein SG0344 [Sodalis gloss...    82   4e-14 
ref|YP_051709.1|  probable tRNA/rRNA methyltransferase [Erwi...    82   4e-14 
ref|NP_799185.1|  RNA methyltransferase, TrmH family [Vibrio...    82   4e-14 
ref|YP_660575.1|  RNA methyltransferase, TrmH family, group ...    82   4e-14 
ref|YP_584239.1|  RNA methyltransferase TrmH, group 3 [Ralst...    82   4e-14 
gb|EAI93850.1|  unknown [environmental sequence]                   82   6e-14 
ref|ZP_01289027.1|  RNA methyltransferase TrmH, group 3 [del...    82   6e-14 
ref|YP_401136.1|  RNA methyltransferase TrmH, group 3 [Synec...    82   6e-14 
ref|NP_875140.1|  rRNA methylase [Prochlorococcus marinus su...    82   6e-14 
ref|YP_363340.1|  tRNA/rRNA methyltransferase [Xanthomonas c...    82   6e-14 
ref|NP_636890.1|  tRNA/rRNA methyltransferase [Xanthomonas c...    82   6e-14 
gb|EAH24349.1|  unknown [environmental sequence]                   81   7e-14 
ref|ZP_01596965.1|  RNA methyltransferase, TrmH family, grou...    81   7e-14 
ref|YP_200723.1|  tRNA/rRNA methyltransferase [Xanthomonas o...    81   7e-14 
ref|YP_172683.1|  probable tRNA/rRNA methyltransferase [Syne...    81   7e-14 
ref|ZP_00134060.1|  COG0566: rRNA methylases [Actinobacillus...    81   7e-14 
gb|EAE19608.1|  unknown [environmental sequence]                   81   1e-13 
ref|ZP_01224495.1|  RNA methyltransferase, TrmH family, grou...    81   1e-13 
pdb|1GZ0|A  Chain A, 23s Ribosomal Rna G2251 2'o-Methyltrans...    81   1e-13 
ref|ZP_01474642.1|  hypothetical protein VEx2w_02002773 [Vib...    81   1e-13 
ref|ZP_00155855.1|  COG0566: rRNA methylases [Haemophilus in...    81   1e-13 
gb|EAK09788.1|  unknown [environmental sequence]                   80   1e-13 
ref|ZP_01662510.1|  putative tRNA/rRNA methyltransferase pro...    80   1e-13 
ref|ZP_01552124.1|  probable RNA methyltransferase [Methylop...    80   1e-13 
ref|ZP_01467707.1|  RNA methyltransferase TrmH, group 3 [Syn...    80   1e-13 
ref|ZP_01261807.1|  RNA methyltransferase, TrmH family prote...    80   1e-13 
ref|YP_045129.1|  putative tRNA/rRNA methyltransferase [Acin...    80   1e-13 
ref|NP_931738.1|  hypothetical protein plu4574 [Photorhabdus...    80   1e-13 
ref|ZP_00156715.2|  COG0566: rRNA methylases [Haemophilus in...    80   1e-13 
ref|YP_673646.1|  tRNA/rRNA methyltransferase (SpoU) [Mesorh...    80   1e-13 
gb|EAK36182.1|  unknown [environmental sequence]                   80   2e-13 
ref|ZP_01642638.1|  RNA methyltransferase, TrmH family, grou...    80   2e-13 
ref|ZP_01362802.1|  RNA methyltransferase TrmH, group 3 [Clo...    80   2e-13 
ref|YP_473775.1|  RNA methyltransferase, TrmH family, group ...    80   2e-13 
ref|NP_299267.1|  tRNA/rRNA methyltransferase [Xylella fasti...    80   2e-13 
ref|ZP_01196076.1|  RNA methyltransferase TrmH, group 3 [Xan...    80   2e-13 
ref|YP_982121.1|  RNA methyltransferase, TrmH family, group ...    80   2e-13 
ref|ZP_01630430.1|  RNA methyltransferase TrmH, group 3 [Nod...    80   2e-13 
ref|ZP_01582468.1|  RNA methyltransferase, TrmH family, grou...    80   2e-13 
ref|NP_882042.1|  putative tRNA/rRNA methyltransferase [Bord...    80   2e-13 
ref|NP_077955.1|  rRNA methylase [Ureaplasma parvum serovar ...    80   2e-13 
ref|YP_755014.1|  conserved hypothetical tRNA/rRNA methyltra...    80   2e-13 
gb|EAI93840.1|  unknown [environmental sequence]                   79   3e-13 
ref|YP_726812.1|  rRNA methylase [Ralstonia eutropha H16] >g...    79   3e-13 
ref|YP_460326.1|  23S rRNA Gm2251 methyltransferase [Syntrop...    79   3e-13 
ref|NP_964425.1|  hypothetical protein LJ0402 [Lactobacillus...    79   3e-13 
ref|YP_744204.1|  23S rRNA Gm2251 methyltransferase [Granuli...    79   4e-13 
emb|CAJ49733.1|  putative tRNA/rRNA methyltransferase [Borde...    79   5e-13 
ref|ZP_01222441.1|  putative RNA methyltransferase, TrmH fam...    79   5e-13 
ref|YP_824080.1|  RNA methyltransferase, TrmH family, group ...    79   5e-13 
ref|ZP_01667488.1|  RNA methyltransferase, TrmH family, grou...    78   6e-13 
ref|YP_986507.1|  RNA methyltransferase, TrmH family, group ...    78   6e-13 
ref|YP_549841.1|  RNA methyltransferase TrmH, group 3 [Polar...    78   6e-13 
ref|YP_131440.1|  putative RNA methyltransferase, TrmH famil...    78   6e-13 
ref|YP_533495.1|  RNA methyltransferase TrmH, group 3 [Rhodo...    78   6e-13 
ref|ZP_00652145.1|  RNA methyltransferase TrmH, group 3 [Xyl...    78   6e-13 
ref|NP_779040.1|  tRNA/rRNA methyltransferase [Xylella fasti...    78   6e-13 
gb|EAI90412.1|  unknown [environmental sequence]                   78   8e-13 
gb|EAB50020.1|  unknown [environmental sequence]                   78   8e-13 
ref|NP_783133.1|  23S rRNA methyltransferase [Clostridium te...    78   8e-13 
ref|YP_302314.1|  SpoU rRNA Methylase family protein [Staphy...    78   8e-13 
ref|NP_872862.1|  putative tRNA/rRNA methyltransferase [Haem...    78   8e-13 
ref|NP_628410.1|  tRNA/rRNA methyltransferase [Streptomyces ...    78   8e-13 
ref|ZP_01651607.1|  RNA methyltransferase, TrmH family, grou...    77   1e-12 
ref|ZP_01291270.1|  RNA methyltransferase TrmH, group 3 [del...    77   1e-12 
ref|YP_767360.1|  putative 23S rRNA (guanosine-2'-O-)-methyl...    77   1e-12 
ref|YP_641896.1|  RNA methyltransferase TrmH, group 3 [Mycob...    77   1e-12 
ref|NP_681833.1|  putative tRNA/rRNA methyltransferase [Ther...    77   1e-12 
ref|ZP_01044303.1|  RRNA methylase, SpoU family protein [Idi...    77   1e-12 
ref|ZP_00109394.1|  COG0566: rRNA methylases [Nostoc punctif...    77   1e-12 
ref|YP_814184.1|  rRNA methylase [Lactobacillus gasseri ATCC...    77   1e-12 
gb|EAG00685.1|  unknown [environmental sequence]                   77   2e-12 
ref|YP_741425.1|  RNA methyltransferase, TrmH family, group ...    77   2e-12 
gb|EAJ98955.1|  unknown [environmental sequence]                   76   2e-12 
ref|YP_001014754.1|  RNA methyltransferase TrmH, group 3 [Pr...    76   2e-12 
ref|YP_291457.1|  RNA methyltransferase TrmH, group 3 [Proch...    76   2e-12 
ref|NP_229539.1|  hypothetical protein TM1741 [Thermotoga ma...    76   2e-12 
ref|ZP_01076472.1|  RNA methyltransferase, TrmH family, grou...    76   2e-12 
ref|YP_988872.1|  RNA methyltransferase, TrmH family [Barton...    76   2e-12 
gb|EAH78950.1|  unknown [environmental sequence]                   76   3e-12 
gb|EAH35981.1|  unknown [environmental sequence]                   76   3e-12 
gb|EAA81532.1|  unknown [environmental sequence]                   76   3e-12 
ref|NP_240979.1|  tRNA/rRNA methyltransferase [Bacillus halo...    76   3e-12 
ref|ZP_00591422.1|  RNA methyltransferase TrmH, group 3 [Pro...    76   3e-12 
ref|ZP_00530980.1|  RNA methyltransferase TrmH, group 3 [Chl...    76   3e-12 
ref|YP_001021011.1|  putative tRNA/rRNA methyltransferase pr...    76   3e-12 
ref|YP_879854.1|  RNA methyltransferase, TrmH family protein...    75   4e-12 
emb|CAJ66869.1|  putative tRNA/rRNA methyltransferase [Clost...    75   4e-12 
ref|ZP_01237163.1|  putative RNA methyltransferase, TrmH fam...    75   4e-12 
ref|ZP_01636851.1|  hypothetical protein CdifQ_03000064 [Clo...    75   4e-12 
ref|NP_825143.1|  tRNA/rRNA methyltransferase [Streptomyces ...    75   4e-12 
ref|NP_739125.1|  hypothetical protein CE2515 [Corynebacteri...    75   4e-12 
ref|YP_898180.1|  tRNA/rRNA methyltransferase [Francisella t...    75   5e-12 
ref|ZP_01275614.1|  RNA methyltransferase TrmH, group 3 [Myc...    75   5e-12 
ref|YP_956114.1|  RNA methyltransferase, TrmH family, group ...    75   5e-12 
ref|YP_161967.1|  rRNA methylase [Zymomonas mobilis subsp. m...    75   5e-12 
ref|YP_077382.1|  putative tRNA/rRNA methyltransferase YacO ...    75   5e-12 
ref|YP_263368.1|  probable RNA methyltransferase, TrmH famil...    75   5e-12 
ref|YP_185464.1|  RNA methyltransferase, TrmH family [Staphy...    75   5e-12 
ref|ZP_01162347.1|  putative RNA methyltransferase, TrmH fam...    75   5e-12 
ref|ZP_01156989.1|  tRNA/rRNA metyltransferase [Oceanicola g...    75   5e-12 
ref|NP_371055.1|  putative tRNA/rRNA methyltransferase [Stap...    75   5e-12 
ref|YP_971359.1|  RNA methyltransferase, TrmH family, group ...    75   7e-12 
ref|YP_483321.1|  RNA methyltransferase TrmH, group 3 [Frank...    75   7e-12 
ref|NP_959413.1|  hypothetical protein MAP0479 [Mycobacteriu...    75   7e-12 
ref|NP_354965.1|  hypothetical protein AGR_C_3623 [Agrobacte...    75   7e-12 
ref|NP_893066.1|  tRNA/rRNA methyltransferase [Prochlorococc...    75   7e-12 
ref|ZP_00914683.1|  RNA methyltransferase TrmH, group 3 [Rho...    75   7e-12 
ref|ZP_00504559.1|  RNA methyltransferase TrmH, group 3 [Clo...    75   7e-12 
ref|YP_076941.1|  rRNA methyltransferase [Symbiobacterium th...    74   9e-12 
ref|NP_691022.1|  tRNA:rRNA methyltransferase [Oceanobacillu...    74   9e-12 
ref|ZP_00618938.1|  RNA methyltransferase TrmH, group 3 [Kin...    74   9e-12 
gb|EAF71125.1|  unknown [environmental sequence]                   74   1e-11 
ref|YP_696569.1|  RNA methyltransferase, TrmH family [Clostr...    74   1e-11 
ref|NP_623850.1|  rRNA methylase [Thermoanaerobacter tengcon...    74   1e-11 
ref|YP_033431.1|  tRNA /rRNA methyltransferase [Bartonella h...    74   1e-11 
ref|NP_969771.1|  RNA methyltransferase, TrmH family, group ...    74   1e-11 
ref|ZP_01047705.1|  RNA methyltransferase TrmH, group 3 [Nit...    74   1e-11 
gb|EAK40685.1|  unknown [environmental sequence]                   74   2e-11 
gb|EAK35211.1|  unknown [environmental sequence]                   74   2e-11 
gb|EAJ40670.1|  unknown [environmental sequence]                   74   2e-11 
ref|YP_890295.1|  RNA methyltransferase, TrmH family protein...    74   2e-11 
ref|ZP_01532780.1|  RNA methyltransferase TrmH, group 3 [Ros...    74   2e-11 
ref|ZP_01432591.1|  RNA methyltransferase TrmH, group 3 [Sal...    74   2e-11 
ref|YP_699167.1|  RNA methyltransferase, TrmH family [Clostr...    74   2e-11 
ref|NP_562805.1|  probable rRNA methylase [Clostridium perfr...    74   2e-11 
gb|EAI12450.1|  unknown [environmental sequence]                   73   2e-11 
gb|EAG17066.1|  unknown [environmental sequence]                   73   2e-11 
gb|EAA90675.1|  unknown [environmental sequence]                   73   2e-11 
ref|ZP_01647097.1|  RNA methyltransferase, TrmH family, grou...    73   2e-11 
ref|ZP_01271474.1|  RNA methyltransferase TrmH, group 3 [Psy...    73   2e-11 
ref|YP_254392.1|  hypothetical protein SH2477 [Staphylococcu...    73   2e-11 
ref|ZP_00517655.1|  RNA methyltransferase TrmH, group 3 [Cro...    73   2e-11 
ref|NP_218096.1|  POSSIBLE TRNA/RRNA METHYLTRANSFERASE [Myco...    73   2e-11 
ref|ZP_01658522.1|  rRNA methylase [Parvibaculum lavamentivo...    73   3e-11 
ref|ZP_01300770.1|  hypothetical protein Rgryl_01000090 [Ric...    73   3e-11 
ref|YP_545734.1|  RNA methyltransferase TrmH, group 3 [Methy...    73   3e-11 
ref|YP_445585.1|  RNA methyltransferase, TrmH family, group ...    73   3e-11 
ref|YP_303247.1|  RNA methyl transferase TrmH, group 3 [Ehrl...    73   3e-11 
ref|NP_772139.1|  tRNA/rRNA metyltransferase [Bradyrhizobium...    73   3e-11 
ref|YP_579333.1|  RNA methyltransferase TrmH, group 3 [Psych...    73   3e-11 
ref|YP_704407.1|  tRNA (guanosine-2 [Rhodococcus sp. RHA1] >...    72   3e-11 
ref|ZP_01356939.1|  RNA methyltransferase TrmH, group 3 [Ros...    72   3e-11 
ref|YP_424103.1|  RNA methyltransferase, TrmH family, group ...    72   3e-11 
ref|NP_857249.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE [Myco...    72   3e-11 
ref|NP_212650.1|  rRNA methylase (yacO) [Borrelia burgdorfer...    72   3e-11 
ref|ZP_00997232.1|  putative tRNA/rRNA methyltransferase [Ja...    72   3e-11 
ref|YP_998153.1|  RNA methyltransferase, TrmH family, group ...    72   5e-11 
ref|YP_485819.1|  RNA methyltransferase TrmH, group 3 [Rhodo...    72   5e-11 
ref|YP_523485.1|  RNA methyltransferase TrmH, group 3 [Rhodo...    72   5e-11 
ref|NP_532670.1|  tRNA/rRNA metyltransferase [Agrobacterium ...    72   5e-11 
ref|YP_507224.1|  RNA methyltransferase, TrmH family, group ...    72   5e-11 
ref|YP_190935.1|  23S rRNA methyltransferase [Gluconobacter ...    72   5e-11 
ref|YP_286169.1|  RNA methyltransferase TrmH, group 3 [Dechl...    72   5e-11 
ref|NP_338229.1|  spoU rRNA methylase family protein [Mycoba...    72   5e-11 
ref|ZP_01003778.1|  RNA methyltransferase, TrmH family, grou...    72   5e-11 
ref|YP_676937.1|  tRNA/rRNA methyltransferase, TrmH family [...    72   5e-11 
gb|EAB39980.1|  unknown [environmental sequence]                   72   6e-11 
ref|YP_709962.1|  rRNA methylase [Borrelia afzelii PKo] >gi|...    72   6e-11 
ref|ZP_01353751.1|  RNA methyltransferase TrmH, group 3 [Clo...    72   6e-11 
ref|YP_352295.1|  tRNA/rRNA metyltransferase [Rhodobacter sp...    72   6e-11 
ref|NP_972049.1|  RNA methyltransferase, TrmH family, group ...    72   6e-11 
emb|CAA83745.1|  rRNA methylase [Mycoplasma capricolum subsp...    72   6e-11 
ref|NP_102094.1|  tRNA/rRNA metyltransferase [Mesorhizobium ...    72   6e-11 
ref|NP_243978.1|  rRNA methylase [Bacillus halodurans C-125]...    72   6e-11 
ref|ZP_00918614.1|  RNA methyltransferase TrmH, group 3 [Rho...    72   6e-11 
ref|YP_847734.1|  RNA methyltransferase, TrmH family, group ...    72   6e-11 
gb|AAR05334.1|  predicted tRNA/rRNA methyltransferase [uncul...    71   8e-11 
ref|YP_469180.1|  probable tRNA/rRNA methyltransferase prote...    71   8e-11 
ref|YP_116645.1|  putative tRNA/rRNA methyltransferase [Noca...    71   8e-11 
ref|ZP_00545123.1|  RNA methyltransferase TrmH, group 3 [Ehr...    71   8e-11 
gb|EAE47492.1|  unknown [environmental sequence]                   71   1e-10 
ref|YP_979723.1|  putative tRNA/rRNA methyltransferase [Myco...    71   1e-10 
ref|NP_326009.1|  TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pu...    71   1e-10 
ref|ZP_00121137.1|  COG0566: rRNA methylases [Bifidobacteriu...    71   1e-10 
gb|EAE25532.1|  unknown [environmental sequence]                   70   1e-10 
ref|YP_001011345.1|  RNA methyltransferase TrmH, group 3 [Pr...    70   1e-10 
ref|ZP_01426349.1|  RNA methyltransferase TrmH, group 3 [Her...    70   1e-10 
ref|ZP_01415525.1|  putative tRNA/rRNA methyltransferase pro...    70   1e-10 
ref|YP_757047.1|  tRNA/rRNA methyltransferase (SpoU) [Marica...    70   1e-10 
ref|YP_577752.1|  RNA methyltransferase TrmH, group 3 [Nitro...    70   1e-10 
ref|YP_396292.1|  Putative tRNA/rRNA methyltransferase [Lact...    70   1e-10 
ref|ZP_00540479.1|  RNA methyltransferase TrmH, group 3 [Exi...    70   1e-10 
ref|YP_819282.1|  rRNA methylase [Leuconostoc mesenteroides ...    70   1e-10 
gb|EAI08058.1|  unknown [environmental sequence]                   70   2e-10 
ref|ZP_01453770.1|  RNA methyltransferase, TrmH family, grou...    70   2e-10 
ref|YP_072958.1|  rRNA methylase [Borrelia garinii PBi] >gi|...    70   2e-10 
ref|YP_001967.1|  tRNA/rRNA methyltransferase [Leptospira in...    70   2e-10 
ref|NP_712043.1|  tRNA/rRNA methyltransferase [Leptospira in...    70   2e-10 
ref|NP_387977.1|  hypothetical protein BSU00960 [Bacillus su...    70   2e-10 
ref|NP_385444.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTE...    70   2e-10 
ref|ZP_01675160.1|  RNA methyltransferase TrmH, group 3 [Can...    70   2e-10 
ref|ZP_01653779.1|  RNA methyltransferase, TrmH family, grou...    70   2e-10 
ref|YP_094147.1|  tRNA/rRNA methyltransferase [Legionella pn...    70   2e-10 
ref|ZP_01150251.1|  RNA methyltransferase TrmH, group 3 [Des...    70   2e-10 
ref|YP_782592.1|  RNA methyltransferase, TrmH family, group ...    70   2e-10 
ref|ZP_00532272.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    70   2e-10 
ref|YP_807492.1|  rRNA methylase [Lactobacillus casei ATCC 3...    70   2e-10 
gb|EAK48265.1|  unknown [environmental sequence]                   69   3e-10 
gb|EAK01168.1|  unknown [environmental sequence]                   69   3e-10 
ref|YP_001009303.1|  RNA methyltransferase TrmH, group 3 [Pr...    69   3e-10 
ref|ZP_01608793.1|  RNA methyltransferase, TrmH family, grou...    69   3e-10 
ref|YP_907666.1|  tRNA/rRNA methyltransferase [Mycobacterium...    69   3e-10 
ref|YP_536135.1|  TRNA/rRNA methyltransferase [Lactobacillus...    69   3e-10 
ref|YP_122458.1|  hypothetical protein lpp0107 [Legionella p...    69   3e-10 
gb|EAI10476.1|  unknown [environmental sequence]                   69   4e-10 
gb|EAH90859.1|  unknown [environmental sequence]                   69   4e-10 
gb|EAH50101.1|  unknown [environmental sequence]                   69   4e-10 
ref|YP_816752.1|  TrmH family RNA methyltransferase group 3 ...    69   4e-10 
ref|YP_221956.1|  RNA methyltransferase, TrmH family, group ...    69   4e-10 
ref|YP_288274.1|  RNA methyltransferase TrmH, group 3 [Therm...    69   4e-10 
ref|NP_698258.1|  RNA methyltransferase, TrmH family, group ...    69   4e-10 
ref|NP_358904.1|  tRNA (guanosine-2'-O-)-methyltransferase, ...    69   4e-10 
ref|ZP_01192811.1|  RNA methyltransferase TrmH, group 3 [Myc...    69   4e-10 
gb|EAF83050.1|  unknown [environmental sequence]                   69   5e-10 
gb|EAF01144.1|  unknown [environmental sequence]                   69   5e-10 
ref|ZP_01437370.1|  putative trna/rrna methyltransferase pro...    69   5e-10 
ref|NP_349751.1|  RRNA methylase, YACO B.subtilis ortholog [...    69   5e-10 
ref|NP_539658.1|  23S ribosomal RNA methyltransferase [Bruce...    69   5e-10 
ref|YP_871845.1|  RNA methyltransferase, TrmH family, group ...    69   5e-10 
gb|EAG61134.1|  unknown [environmental sequence]                   68   7e-10 
gb|EAB74622.1|  unknown [environmental sequence]                   68   7e-10 
emb|CAL98630.1|  tRNA/rRNA methyltransferase [Lactococcus la...    68   7e-10 
ref|YP_877839.1|  rRNA methylase [Clostridium novyi NT] >gi|...    68   7e-10 
ref|ZP_01418260.1|  RNA methyltransferase TrmH, group 3 [Cau...    68   7e-10 
emb|CAK98515.1|  putative trna/rrna methyltransferase protei...    68   7e-10 
ref|YP_496642.1|  RNA methyltransferase TrmH, group 3 [Novos...    68   7e-10 
ref|YP_361140.1|  RNA methyltransferase, TrmH family, group ...    68   7e-10 
ref|NP_948703.1|  putative rRNA methylase [Rhodopseudomonas ...    68   7e-10 
ref|YP_570356.1|  RNA methyltransferase TrmH, group 3 [Rhodo...    68   7e-10 
ref|YP_138632.1|  tRNA/rRNA methyltransferase [Streptococcus...    68   7e-10 
gb|EAJ60579.1|  unknown [environmental sequence]                   68   9e-10 
gb|EAC68134.1|  unknown [environmental sequence]                   68   9e-10 
gb|EAC08099.1|  unknown [environmental sequence]                   68   9e-10 
gb|EAB45643.1|  unknown [environmental sequence]                   68   9e-10 
ref|YP_925204.1|  RNA methyltransferase, TrmH family, group ...    68   9e-10 
ref|ZP_01548604.1|  tRNA/rRNA metyltransferase [Stappia aggr...    68   9e-10 
ref|YP_205696.1|  23S rRNA Gm2251 methyltransferase [Vibrio ...    68   9e-10 
ref|NP_720634.1|  putative tRNA/rRNA methyltransferase [Stre...    68   9e-10 
ref|YP_125470.1|  hypothetical protein lpl0092 [Legionella p...    68   9e-10 
ref|ZP_00911735.1|  RNA methyltransferase TrmH, group 3 [Clo...    68   9e-10 
ref|ZP_00884688.1|  RNA methyltransferase TrmH, group 3 [Cal...    68   9e-10 
ref|YP_811657.1|  rRNA methylase [Lactococcus lactis subsp. ...    68   9e-10 
gb|EAI83750.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAI83747.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAI34337.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAH64546.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAF43712.1|  unknown [environmental sequence]                   67   1e-09 
ref|ZP_01302424.1|  rRNA methylase [Sphingomonas sp. SKA58] ...    67   1e-09 
ref|YP_589003.1|  RNA methyltransferase, TrmH family, group ...    67   1e-09 
ref|YP_318672.1|  RNA methyltransferase TrmH, group 3 [Nitro...    67   1e-09 
ref|NP_268029.1|  tRNA-guanosine methyltransferase [Lactococ...    67   1e-09 
ref|NP_695865.1|  possible tRNA/rRNA methyltransferase [Bifi...    67   1e-09 
ref|ZP_01173593.1|  tRNA/rRNA methyltransferase [Bacillus sp...    67   1e-09 
ref|ZP_00982482.1|  COG0566: rRNA methylases [Burkholderia c...    67   1e-09 
ref|YP_804971.1|  rRNA methylase [Pediococcus pentosaceus AT...    67   1e-09 
ref|NP_345911.1|  spoU rRNA methylase family protein [Strept...    67   1e-09 
gb|EAE82874.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAB01862.1|  unknown [environmental sequence]                   67   1e-09 
ref|ZP_01039171.1|  rRNA methylase [Erythrobacter sp. NAP1] ...    67   1e-09 
ref|ZP_00964254.1|  RNA methyltransferase, TrmH family, grou...    67   1e-09 
ref|ZP_00864073.1|  RNA methyltransferase TrmH, group 3 [Bra...    67   1e-09 
ref|ZP_00603455.1|  RNA methyltransferase TrmH, group 3 [Ent...    67   1e-09 
ref|ZP_00766488.1|  RNA methyltransferase TrmH, group 3 [Chl...    67   1e-09 
gb|EAJ51805.1|  unknown [environmental sequence]                   67   2e-09 
gb|EAD44640.1|  unknown [environmental sequence]                   67   2e-09 
gb|EAB64095.1|  unknown [environmental sequence]                   67   2e-09 
gb|EAE39850.1|  unknown [environmental sequence]                   67   2e-09 
ref|ZP_01666069.1|  tRNA/rRNA methyltransferase (SpoU) [Ther...    67   2e-09 
ref|ZP_01225693.1|  RNA methyltransferase, TrmH family, grou...    67   2e-09 
ref|YP_193273.1|  tRNA-rRNA methyltransferase [Lactobacillus...    67   2e-09 
ref|NP_763849.1|  putative tRNA/rRNA methyltransferase [Stap...    67   2e-09 
ref|YP_187768.1|  RNA methyltransferase, TrmH family, group ...    67   2e-09 
ref|ZP_01130404.1|  tRNA/rRNA methyltransferase protein [mar...    67   2e-09 
ref|ZP_00999144.1|  RNA methyltransferase, TrmH family, grou...    67   2e-09 
ref|ZP_00909777.1|  probable rRNA methylase [Clostridium bei...    67   2e-09 
gb|EAJ66773.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAI78852.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAI56914.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAH57876.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAG96511.1|  unknown [environmental sequence]                   66   2e-09 
ref|ZP_01543685.1|  tRNA/rRNA methyltransferase [Oenococcus ...    66   2e-09 
ref|YP_060978.1|  23S rRNA Gm2251 methyltransferase [Strepto...    66   2e-09 
ref|YP_397347.1|  RNA methyltransferase TrmH, group 3 [Proch...    66   2e-09 
ref|YP_032357.1|  tRNA /rRNA methyltransferase [Bartonella q...    66   2e-09 
ref|NP_665473.1|  putative tRNA/rRNA methyltransferase, spoU...    66   2e-09 
ref|ZP_01056297.1|  RNA methyltransferase, TrmH family, grou...    66   2e-09 
ref|ZP_00955302.1|  RNA methyltransferase, TrmH family prote...    66   2e-09 
ref|YP_644928.1|  RNA methyltransferase TrmH, group 3 [Rubro...    66   2e-09 
gb|EAJ18559.1|  unknown [environmental sequence]                   66   3e-09 
gb|EAI58537.1|  unknown [environmental sequence]                   66   3e-09 
gb|EAF78626.1|  unknown [environmental sequence]                   66   3e-09 
gb|EAE46857.1|  unknown [environmental sequence]                   66   3e-09 
ref|NP_420052.1|  spoU rRNA methylase family protein [Caulob...    66   3e-09 
ref|NP_757409.1|  rRNA methylase [Mycoplasma penetrans HF-2]...    66   3e-09 
ref|NP_301351.1|  putative methyltransferase [Mycobacterium ...    66   3e-09 
gb|EAJ55321.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAH59719.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAH31363.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAG74901.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAG62827.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAB82669.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAE73293.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAE53602.1|  unknown [environmental sequence]                   65   4e-09 
ref|YP_798243.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    65   4e-09 
ref|YP_699682.1|  RNA methyltransferase, TrmH family, group ...    65   4e-09 
ref|YP_697113.1|  RNA methyltransferase, TrmH family, group ...    65   4e-09 
ref|YP_597384.1|  23S rRNA Gm2251 methyltransferase [Strepto...    65   4e-09 
ref|NP_348974.1|  RRNA methylase, YSGA B.subtilis ortholog [...    65   4e-09 
ref|NP_878394.1|  probable tRNA/rRNA methyltransferase [Cand...    65   4e-09 
ref|NP_563340.1|  probable tRNA/rRNA methyltransferase [Clos...    65   4e-09 
ref|YP_615897.1|  RNA methyltransferase TrmH, group 3 [Sphin...    65   4e-09 
gb|EAJ63092.1|  unknown [environmental sequence]                   65   6e-09 
gb|EAE47375.1|  unknown [environmental sequence]                   65   6e-09 
ref|YP_281105.1|  23S rRNA methyltransferase [Streptococcus ...    65   6e-09 
ref|YP_166400.1|  RNA methyltransferase, TrmH family, group ...    65   6e-09 
ref|YP_053328.1|  rRNA methylase [Mesoplasma florum L1] >gi|...    65   6e-09 
ref|NP_269915.1|  putative tRNA/rRNA methyltransferase [Stre...    65   6e-09 
ref|NP_734674.1|  hypothetical protein gbs0204 [Streptococcu...    65   6e-09 
ref|ZP_01015684.1|  tRNA/rRNA metyltransferase [Rhodobactera...    65   6e-09 
ref|ZP_00786329.1|  RNA methyltransferase, TrmH family, grou...    65   6e-09 
gb|EAK03310.1|  unknown [environmental sequence]                   65   7e-09 
gb|EAJ39449.1|  unknown [environmental sequence]                   65   7e-09 
gb|EAI34283.1|  unknown [environmental sequence]                   65   7e-09 
gb|EAD10456.1|  unknown [environmental sequence]                   65   7e-09 
gb|EAC01029.1|  unknown [environmental sequence]                   65   7e-09 
gb|EAB51168.1|  unknown [environmental sequence]                   65   7e-09 
ref|NP_687244.1|  RNA methyltransferase, TrmH family, group ...    65   7e-09 
gb|EAK42735.1|  unknown [environmental sequence]                   64   9e-09 
gb|EAH58782.1|  unknown [environmental sequence]                   64   9e-09 
gb|EAD65211.1|  unknown [environmental sequence]                   64   9e-09 
ref|YP_862873.1|  TrmH family tRNA/rRNA methyltransferase [G...    64   9e-09 
ref|NP_975927.1|  rRNA Methylase [Mycoplasma mycoides subsp....    64   9e-09 
ref|NP_871181.1|  hypothetical protein WGLp178 [Wigglesworth...    64   9e-09 
ref|NP_071221.1|  rRNA methylase, putative [Archaeoglobus fu...    64   9e-09 
ref|XP_829640.1|  hypothetical protein Tb11.01.7490 [Trypano...    64   9e-09 
ref|ZP_00631307.1|  RNA methyltransferase TrmH, group 3 [Par...    64   9e-09 
ref|ZP_00365654.1|  COG0566: rRNA methylases [Streptococcus ...    64   9e-09 
gb|EAH65601.1|  unknown [environmental sequence]                   64   1e-08 
gb|EAF48086.1|  unknown [environmental sequence]                   64   1e-08 
gb|EAF39066.1|  unknown [environmental sequence]                   64   1e-08 
ref|YP_683732.1|  RNA methyltransferase, TrmH family, putati...    64   1e-08 
ref|ZP_01038304.1|  RNA methyltransferase, TrmH family, grou...    64   1e-08 
ref|ZP_00049585.1|  COG0566: rRNA methylases [Magnetospirill...    64   1e-08 
gb|EAJ90987.1|  unknown [environmental sequence]                   64   2e-08 
gb|EAJ29317.1|  unknown [environmental sequence]                   64   2e-08 
gb|EAC89880.1|  unknown [environmental sequence]                   64   2e-08 
gb|EAE99105.1|  unknown [environmental sequence]                   64   2e-08 
gb|EAB12369.1|  unknown [environmental sequence]                   64   2e-08 
ref|ZP_01445077.1|  RNA methyltransferase, TrmH family, grou...    64   2e-08 
ref|ZP_01357071.1|  tRNA/rRNA methyltransferase (SpoU) [Rose...    64   2e-08 
ref|ZP_01355190.1|  tRNA/rRNA methyltransferase (SpoU) [Clos...    64   2e-08 
ref|YP_277602.1|  probable tRNA/rRNA methyltransferase [Cand...    64   2e-08 
ref|YP_197517.1|  Hypothetical tRNA/rRNA methyltransferase [...    64   2e-08 
ref|YP_196558.1|  Hypothetical tRNA/rRNA methyltransferase [...    64   2e-08 
ref|YP_180475.1|  putative tRNA/rRNA methyltransferase [Ehrl...    64   2e-08 
ref|ZP_01164225.1|  RNA methyltransferase TrmH, group 3 [Lac...    64   2e-08 
ref|YP_830229.1|  RNA methyltransferase, TrmH family, group ...    64   2e-08 
gb|EAD57508.1|  unknown [environmental sequence]                   63   2e-08 
ref|ZP_01575257.1|  RNA methyltransferase, TrmH family, grou...    63   2e-08 
ref|ZP_01274684.1|  RNA methyltransferase TrmH, group 3 [Lac...    63   2e-08 
ref|NP_602346.1|  23S rRNA methyltransferase [Fusobacterium ...    63   2e-08 
ref|NP_390743.1|  hypothetical protein BSU28650 [Bacillus su...    63   2e-08 
ref|ZP_00232234.1|  RNA methyltransferase, TrmH family, grou...    63   2e-08 
gb|EAK48121.1|  unknown [environmental sequence]                   63   3e-08 
gb|EAK00354.1|  unknown [environmental sequence]                   63   3e-08 
gb|EAJ81511.1|  unknown [environmental sequence]                   63   3e-08 
gb|EAI54163.1|  unknown [environmental sequence]                   63   3e-08 
gb|EAD59101.1|  unknown [environmental sequence]                   63   3e-08 
gb|EAC34616.1|  unknown [environmental sequence]                   63   3e-08 
ref|YP_848405.1|  RNA methyltransferase, TrmH family, group ...    63   3e-08 
ref|YP_966354.1|  tRNA guanosine-2'-O-methyltransferase [Des...    63   3e-08 
ref|ZP_01245499.1|  RNA methyltransferase TrmH, group 3 [Fla...    63   3e-08 
ref|YP_506155.1|  RNA methyltransferase, TrmH family, group ...    63   3e-08 
ref|YP_011568.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    63   3e-08 
ref|NP_784380.1|  tRNA/rRNA methyltransferase [Lactobacillus...    63   3e-08 
ref|ZP_00960082.1|  RNA methyltransferase, TrmH family, grou...    63   3e-08 
ref|ZP_00144235.1|  23S rRNA methyltransferase [Fusobacteriu...    63   3e-08 
gb|EAH64011.1|  unknown [environmental sequence]                   62   4e-08 
gb|EAH53423.1|  unknown [environmental sequence]                   62   4e-08 
gb|EAC34746.1|  unknown [environmental sequence]                   62   4e-08 
ref|ZP_01624220.1|  tRNA/rRNA methyltransferase (SpoU) [Lyng...    62   4e-08 
ref|YP_444648.1|  putative RNA methyltransferase [Salinibact...    62   4e-08 
ref|YP_910454.1|  tRNA/rRNA methyltransferase protein [Bifid...    62   4e-08 
ref|ZP_00952126.1|  spoU rRNA methylase family protein [Ocea...    62   4e-08 
ref|ZP_00504301.1|  RNA methyltransferase TrmH, group 3 [Clo...    62   4e-08 
ref|NP_469618.1|  hypothetical protein lin0273 [Listeria inn...    62   4e-08 
gb|EAK59345.1|  unknown [environmental sequence]                   62   5e-08 
gb|EAK39511.1|  unknown [environmental sequence]                   62   5e-08 
gb|EAK00605.1|  unknown [environmental sequence]                   62   5e-08 
gb|EAJ75474.1|  unknown [environmental sequence]                   62   5e-08 
gb|EAI44735.1|  unknown [environmental sequence]                   62   5e-08 
gb|EAI38255.1|  unknown [environmental sequence]                   62   5e-08 
ref|ZP_01679008.1|  RNA methyltransferase, TrmH family [Vibr...    62   5e-08 
ref|ZP_01514427.1|  RNA methyltransferase TrmH, group 3 [Chl...    62   5e-08 
ref|YP_810951.1|  rRNA methylase [Oenococcus oeni PSU-1] >gi...    62   5e-08 
ref|YP_360402.1|  RNA methyltransferase, TrmH family protein...    62   5e-08 
ref|YP_012863.1|  RNA methyltransferase, TrmH family, group ...    62   5e-08 
ref|NP_906688.1|  hypothetical protein WS0446 [Wolinella suc...    62   5e-08 
ref|NP_110043.1|  tRNA/rRNA methyltransferase [Mycoplasma pn...    62   5e-08 
gb|EAK63352.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAI01858.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAG49071.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAG25000.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAB93782.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAB71860.1|  unknown [environmental sequence]                   62   6e-08 
gb|EAF03952.1|  unknown [environmental sequence]                   62   6e-08 
emb|CAL97171.1|  rRNA methyltransferase [Lactococcus lactis ...    62   6e-08 
ref|ZP_01449083.1|  RNA methyltransferase, TrmH family, grou...    62   6e-08 
ref|YP_538235.1|  tRNA/rRNA methyltransferase [Rickettsia be...    62   6e-08 
ref|XP_641892.2|  tRNA/rRNA methyltransferase SpoU family pr...    62   6e-08 
ref|YP_015844.1|  spoU class tRNA/rRNA methylase [Mycoplasma...    62   6e-08 
ref|ZP_00588233.1|  tRNA/rRNA methyltransferase (SpoU) [Pelo...    62   6e-08 
ref|YP_808613.1|  rRNA methylase [Lactococcus lactis subsp. ...    62   6e-08 
ref|YP_946696.1|  putative RNA methyltransferase, TrmH famil...    61   8e-08 
ref|YP_794759.1|  rRNA methylase [Lactobacillus brevis ATCC ...    61   8e-08 
ref|YP_761366.1|  RNA methyltransferase, TrmH family, group ...    61   8e-08 
ref|YP_753774.1|  23S rRNA methyltransferase [Syntrophomonas...    61   8e-08 
ref|NP_001048646.1|  Os03g0100500 [Oryza sativa (japonica cu...    61   8e-08 
gb|ABF93471.1|  RNA methyltransferase, TrmH family protein, ...    61   8e-08 
ref|YP_062669.1|  tRNA/rRNA methyltransferase protein [Leifs...    61   8e-08 
ref|YP_457630.1|  rRNA methylase [Erythrobacter litoralis HT...    61   8e-08 
ref|NP_218549.1|  rRNA methylase, putative [Treponema pallid...    61   8e-08 
ref|NP_495375.2|  T14B4.1 [Caenorhabditis elegans] >gi|24418...    61   8e-08 
pir||T28895  hypothetical protein T14B4.1 - Caenorhabditis e...    61   8e-08 
ref|ZP_00660832.1|  tRNA/rRNA methyltransferase (SpoU) [Pros...    61   8e-08 
gb|EAI58543.1|  unknown [environmental sequence]                   61   1e-07 
gb|EAH98914.1|  unknown [environmental sequence]                   61   1e-07 
gb|EAD78232.1|  unknown [environmental sequence]                   61   1e-07 
gb|EAC48431.1|  unknown [environmental sequence]                   61   1e-07 
ref|ZP_01425559.1|  tRNA/rRNA methyltransferase (SpoU) [Herp...    61   1e-07 
ref|YP_504889.1|  RNA methyltransferase, TrmH family, group ...    61   1e-07 
ref|YP_380029.1|  SpoU rRNA methylase family protein [Chloro...    61   1e-07 
ref|YP_145940.1|  tRNA/rRNA methyltransferase [Geobacillus k...    61   1e-07 
ref|ZP_01145441.1|  RNA methyltransferase TrmH, group 3 [Aci...    61   1e-07 
ref|ZP_01119012.1|  RNA methyltransferase, TrmH family prote...    61   1e-07 
gb|EAJ52342.1|  unknown [environmental sequence]                   60   1e-07 
gb|EAC93465.1|  unknown [environmental sequence]                   60   1e-07 
ref|ZP_01531057.1|  tRNA/rRNA methyltransferase (SpoU) [Rose...    60   1e-07 
gb|AAM28546.1|AF494517_1  putative tRNA/rRNA methyl transfer...    60   1e-07 
ref|NP_782822.1|  23S rRNA methyltransferase [Clostridium te...    60   1e-07 
ref|NP_923500.1|  probable tRNA/rRNA methyltransferase [Gloe...    60   1e-07 
ref|ZP_01051127.1|  putative tRNA:rRNA methyltransferase [Ce...    60   1e-07 
gb|EAJ54639.1|  unknown [environmental sequence]                   60   2e-07 
gb|EAF99160.1|  unknown [environmental sequence]                   60   2e-07 
gb|EAB42679.1|  unknown [environmental sequence]                   60   2e-07 
ref|ZP_01690930.1|  RNA methyltransferase, TrmH family, grou...    60   2e-07 
pdb|2I6D|A  Chain A, The Structure Of A Putative Rna Methylt...    60   2e-07 
ref|ZP_01253034.1|  putative tRNA:rRNA methyltransferase [Ps...    60   2e-07 
ref|YP_516503.1|  hypothetical protein DSY0270 [Desulfitobac...    60   2e-07 
ref|YP_066595.1|  similar to tRNA/rRNA methyltransferase [De...    60   2e-07 
ref|NP_682758.1|  putative tRNA/rRNA methyltransferase [Ther...    60   2e-07 
ref|ZP_01054094.1|  putative tRNA:rRNA methyltransferase [Te...    60   2e-07 
ref|NP_842659.1|  RNA methyltransferase, TrmH family, group ...    60   2e-07 
gb|EAH59047.1|  unknown [environmental sequence]                   60   2e-07 
gb|EAH55691.1|  unknown [environmental sequence]                   60   2e-07 
gb|EAB99836.1|  unknown [environmental sequence]                   60   2e-07 
ref|YP_903762.1|  RNA methyltransferase, TrmH family, group ...    60   2e-07 
emb|CAL57658.1|  SpoU rRNA Methylase family protein (ISS) [O...    60   2e-07 
gb|EAT33757.1|  conserved hypothetical protein [Aedes aegypti]     60   2e-07 
ref|YP_591688.1|  tRNA/rRNA methyltransferase (SpoU) [Acidob...    60   2e-07 
ref|ZP_01278403.1|  tRNA/rRNA methyltransferase (SpoU) [Myco...    60   2e-07 
ref|NP_905013.1|  RNA methyltransferase, TrmH family [Porphy...    60   2e-07 
ref|YP_005660.1|  23S rRNA methyltransferase [Thermus thermo...    60   2e-07 
gb|EAH81993.1|  unknown [environmental sequence]                   59   3e-07 
gb|EAD67310.1|  unknown [environmental sequence]                   59   3e-07 
gb|EAG68126.1|  unknown [environmental sequence]                   59   3e-07 
gb|EAB55996.1|  unknown [environmental sequence]                   59   3e-07 
ref|ZP_01586832.1|  RNA methyltransferase, TrmH family, grou...    59   3e-07 
ref|ZP_01523132.1|  RNA methyltransferase TrmH, group 3 [Fer...    59   3e-07 
ref|ZP_01418329.1|  tRNA/rRNA methyltransferase, SpoU:RNA 2-...    59   3e-07 
ref|YP_314367.1|  RNA methyltransferase TrmH [Thiobacillus d...    59   3e-07 
ref|XP_536342.2|  PREDICTED: similar to TAR RNA binding prot...    59   3e-07 
ref|YP_154080.1|  hypothetical protein AM915 [Anaplasma marg...    59   3e-07 
ref|YP_173635.1|  tRNA/rRNA methyltransferase [Bacillus clau...    59   3e-07 
ref|NP_441675.1|  rRNA methylase [Synechocystis sp. PCC 6803...    59   3e-07 
ref|ZP_01120662.1|  putative tRNA:rRNA methyltransferase [Ro...    59   3e-07 
ref|ZP_01085789.1|  tRNA/rRNA methyltransferase (SpoU) [Syne...    59   3e-07 
ref|ZP_01053833.1|  RNA methyltransferase, TrmH family prote...    59   3e-07 
gb|EAH32186.1|  unknown [environmental sequence]                   59   4e-07 
gb|EAC38757.1|  unknown [environmental sequence]                   59   4e-07 
gb|EAC26252.1|  unknown [environmental sequence]                   59   4e-07 
gb|EAB97397.1|  unknown [environmental sequence]                   59   4e-07 
ref|YP_510743.1|  RNA methyltransferase TrmH, group 3 [Janna...    59   4e-07 
ref|YP_549494.1|  tRNA/rRNA methyltransferase (SpoU) [Polaro...    59   4e-07 
gb|AAS73070.1|  predicted rRNA methylase [uncultured marine ...    59   4e-07 
ref|ZP_01181941.1|  RNA methyltransferase TrmH, group 3 [Bac...    59   4e-07 
ref|ZP_00208891.1|  COG0566: rRNA methylases [Magnetospirill...    59   4e-07 
gb|EAJ79777.1|  unknown [environmental sequence]                   59   5e-07 
gb|EAF03436.1|  unknown [environmental sequence]                   59   5e-07 
ref|XP_969390.1|  PREDICTED: similar to TAR RNA binding prot...    59   5e-07 
ref|NP_484219.1|  rRNA methylase [Nostoc sp. PCC 7120] >gi|1...    59   5e-07 
ref|ZP_01187021.1|  RNA methyltransferase TrmH, group 3 [Bac...    59   5e-07 
ref|ZP_00106744.1|  COG0566: rRNA methylases [Nostoc punctif...    59   5e-07 
gb|EAK63499.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAJ58220.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAI70920.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAI68525.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAI41385.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAD73393.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAH24396.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAC53223.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAF89678.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAC18144.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAC09506.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAE50545.1|  unknown [environmental sequence]                   58   7e-07 
gb|EAD87306.1|  unknown [environmental sequence]                   58   7e-07 
ref|XP_001102931.1|  PREDICTED: similar to TAR RNA binding p...    58   7e-07 
ref|YP_637659.1|  tRNA/rRNA methyltransferase (SpoU) [Mycoba...    58   7e-07 
ref|ZP_01203168.1|  RNA methyltransferase, TrmH family, grou...    58   7e-07 
ref|NP_853460.1|  SpoU [Mycoplasma gallisepticum R] >gi|3154...    58   7e-07 
ref|NP_266763.1|  tRNA/rRNA methyltransferase [Lactococcus l...    58   7e-07 
ref|YP_100259.1|  tRNA/rRNA methyltransferase [Bacteroides f...    58   7e-07 
ref|YP_614043.1|  RNA methyltransferase TrmH, group 3 [Silic...    58   7e-07 
gb|EAK42772.1|  unknown [environmental sequence]                   58   9e-07 
gb|EAJ04512.1|  unknown [environmental sequence]                   58   9e-07 
gb|EAC08271.1|  unknown [environmental sequence]                   58   9e-07 
gb|EAE70401.1|  unknown [environmental sequence]                   58   9e-07 
ref|ZP_01632675.1|  rRNA methylase [Nodularia spumigena CCY9...    58   9e-07 
ref|ZP_01386998.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    58   9e-07 
ref|ZP_01371572.1|  tRNA/rRNA methyltransferase (SpoU) [Desu...    58   9e-07 
gb|AAR05259.1|  predicted 23S rRNA methylase [uncultured mar...    58   9e-07 
gb|AAQ62387.1|  predicted rRNA methylase [uncultured marine ...    58   9e-07 
ref|NP_829993.1|  23S rRNA methyltransferase [Bacillus cereu...    58   9e-07 
ref|NP_813857.1|  RNA methyltransferase, TrmH family [Entero...    58   9e-07 
ref|NP_868166.1|  spoU rRNA methylase family protein [Rhodop...    58   9e-07 
ref|NP_072917.1|  RNA methyltransferase, TrmH family, group ...    58   9e-07 
ref|ZP_00950080.1|  putative tRNA:rRNA methyltransferase [Cr...    58   9e-07 
ref|ZP_00618824.1|  tRNA/rRNA methyltransferase (SpoU) [Kine...    58   9e-07 
ref|XP_766969.1|  hypothetical protein GLP_398_6250_2867 [Gi...    58   9e-07 
gb|EAF92903.1|  unknown [environmental sequence]                   57   1e-06 
gb|EAF24019.1|  unknown [environmental sequence]                   57   1e-06 
ref|XP_001237715.1|  ENSANGP00000030085 [Anopheles gambiae s...    57   1e-06 
ref|YP_798658.1|  rRNA methylase [Leptospira borgpetersenii ...    57   1e-06 
ref|ZP_01427630.1|  tRNA/rRNA methyltransferase (SpoU) [Herp...    57   1e-06 
ref|YP_176177.1|  23S rRNA methyltransferase [Bacillus claus...    57   1e-06 
ref|NP_840849.1|  tRNA/rRNA methyltransferase (SpoU) [Nitros...    57   1e-06 
pdb|1IPA|A  Chain A, Crystal Structure Of Rna 2'-O Ribose Me...    57   1e-06 
gb|EAI42976.1|  unknown [environmental sequence]                   57   2e-06 
gb|EAH04729.1|  unknown [environmental sequence]                   57   2e-06 
ref|ZP_01306436.1|  putative tRNA/rRNA methyltransferase [Oc...    57   2e-06 
ref|YP_951507.1|  tRNA/rRNA methyltransferase (SpoU) [Mycoba...    57   2e-06 
gb|ABD72531.1|  prespore-specific protein-like [Physarum pol...    57   2e-06 
ref|ZP_01062327.1|  putative tRNA:rRNA methyltransferase [Fl...    57   2e-06 
ref|ZP_01052082.1|  spoU protein [Tenacibaculum sp. MED152] ...    57   2e-06 
ref|ZP_00994586.1|  putative rRNA methylase [Janibacter sp. ...    57   2e-06 
ref|ZP_00518860.1|  tRNA/rRNA methyltransferase (SpoU) [Croc...    57   2e-06 
gb|EAC84799.1|  unknown [environmental sequence]                   57   2e-06 
gb|EAB79959.1|  unknown [environmental sequence]                   57   2e-06 
gb|EAB54760.1|  unknown [environmental sequence]                   57   2e-06 
gb|EAB12954.1|  unknown [environmental sequence]                   57   2e-06 
gb|EAE04132.1|  unknown [environmental sequence]                   57   2e-06 
ref|XP_514281.2|  PREDICTED: TAR RNA binding protein 1 [Pan ...    57   2e-06 
pdb|2HA8|A  Chain A, Methyltransferase Domain Of Human Tar (...    57   2e-06 
ref|ZP_01260453.1|  RNA methyltransferase, TrmH family prote...    57   2e-06 
ref|NP_360646.1|  tRNA/rRNA methyltransferase [EC:2.1.1.-] [...    57   2e-06 
ref|NP_005637.3|  TAR RNA binding protein 1 [Homo sapiens] >...    57   2e-06 
ref|NP_214143.1|  rRNA methylase SpoU [Aquifex aeolicus VF5]...    57   2e-06 
ref|ZP_01118731.1|  spoU protein [Polaribacter irgensii 23-P...    57   2e-06 
ref|ZP_00766857.1|  tRNA/rRNA methyltransferase (SpoU):tRNA/...    57   2e-06 
ref|ZP_00340632.1|  COG0566: rRNA methylases [Rickettsia aka...    57   2e-06 
ref|YP_674765.1|  tRNA/rRNA methyltransferase (SpoU) [Mesorh...    57   2e-06 
gb|EAK34348.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAJ53237.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAJ31542.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAJ17357.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAH73282.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAD65461.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAG89454.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAE59949.1|  unknown [environmental sequence]                   56   3e-06 
ref|ZP_01200850.1|  RNA methyltransferase, SpoU family [Flav...    56   3e-06 
ref|XP_368509.1|  hypothetical protein MG00735.4 [Magnaporth...    56   3e-06 
ref|YP_545216.1|  tRNA/rRNA methyltransferase (SpoU) [Methyl...    56   3e-06 
ref|YP_266538.1|  SpoU rRNA Methylase family [Candidatus Pel...    56   3e-06 
ref|NP_214299.1|  rRNA methylase [Aquifex aeolicus VF5] >gi|...    56   3e-06 
ref|NP_897772.1|  putative tRNA (guanosine-2'-O-)-methyltran...    56   3e-06 
ref|ZP_00153988.2|  COG0566: rRNA methylases [Rickettsia ric...    56   3e-06 
ref|ZP_00142846.1|  tRNA/rRNA methyltransferase [Rickettsia ...    56   3e-06 
gb|EAK60342.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAK42596.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAJ16530.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAG93059.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAB66025.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAF04033.1|  unknown [environmental sequence]                   56   3e-06 
gb|EAE51144.1|  unknown [environmental sequence]                   56   3e-06 
ref|ZP_01577800.1|  tRNA/rRNA methyltransferase (SpoU) [Delf...    56   3e-06 
ref|ZP_01516058.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    56   3e-06 
ref|YP_705468.1|  probable RNA methyltransferase [Rhodococcu...    56   3e-06 
ref|ZP_01275206.1|  tRNA/rRNA methyltransferase (SpoU) [Lact...    56   3e-06 
ref|XP_001246776.1|  hypothetical protein CIMG_00547 [Coccid...    56   3e-06 
ref|ZP_01224460.1|  putative rRNA methylase [marine gamma pr...    56   3e-06 
ref|YP_387978.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    56   3e-06 
ref|NP_662765.1|  SpoU rRNA methylase family protein [Chloro...    56   3e-06 
ref|NP_693053.1|  rRNA methylase [Oceanobacillus iheyensis H...    56   3e-06 
ref|YP_982004.1|  tRNA/rRNA methyltransferase (SpoU) [Polaro...    56   3e-06 
ref|ZP_00378770.1|  COG0566: rRNA methylases [Brevibacterium...    56   3e-06 
gb|EAF50134.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAB79816.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAF15220.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAB58860.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAB12968.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAE54447.1|  unknown [environmental sequence]                   55   4e-06 
gb|EAE53840.1|  unknown [environmental sequence]                   55   4e-06 
ref|XP_614988.3|  PREDICTED: similar to TAR RNA loop binding...    55   4e-06 
ref|YP_883915.1|  spou rRNA methylase family protein [Mycoba...    55   4e-06 
ref|XP_447717.1|  hypothetical protein CAGL0I10989g [Candida...    55   4e-06 
ref|YP_002748.1|  rRNA methylase [Leptospira interrogans ser...    55   4e-06 
ref|NP_962793.1|  hypothetical protein MAP3859 [Mycobacteriu...    55   4e-06 
ref|NP_710968.1|  SpoU rRNA Methylase family protein [Leptos...    55   4e-06 
ref|NP_540715.1|  23S ribosomal RNA methyltransferase [Bruce...    55   4e-06 
ref|NP_302605.1|  possible RNA methyltransferase [Mycobacter...    55   4e-06 
ref|NP_797333.1|  RNA methyltransferase, TrmH family [Vibrio...    55   4e-06 
ref|ZP_01164536.1|  rRNA methylase [Lactobacillus reuteri JC...    55   4e-06 
ref|ZP_00995589.1|  putative rRNA methyltransferase [Janibac...    55   4e-06 
gb|EAH11207.1|  unknown [environmental sequence]                   55   6e-06 
gb|EAG04664.1|  unknown [environmental sequence]                   55   6e-06 
ref|ZP_01650205.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    55   6e-06 
ref|YP_891491.1|  RNA methyltransferase, TrmH family, group ...    55   6e-06 
ref|YP_394417.1|  RNA methyltransferase TrmH, group 3 [Thiom...    55   6e-06 
ref|XP_454364.1|  unnamed protein product [Kluyveromyces lac...    55   6e-06 
ref|NP_936225.1|  rRNA methylase [Vibrio vulnificus YJ016] >...    55   6e-06 
ref|ZP_01191619.1|  tRNA/rRNA methyltransferase (SpoU) [Myco...    55   6e-06 
gb|EAK63633.1|  unknown [environmental sequence]                   55   8e-06 
gb|EAK54894.1|  unknown [environmental sequence]                   55   8e-06 
gb|EAI14250.1|  unknown [environmental sequence]                   55   8e-06 
gb|EAE19525.1|  unknown [environmental sequence]                   55   8e-06 
ref|ZP_01627933.1|  tRNA/rRNA methyltransferase (SpoU) [mari...    55   8e-06 
ref|YP_896860.1|  23S rRNA methyltransferase [Bacillus thuri...    55   8e-06 
ref|YP_817193.1|  SpoU rRNA Methylase family protein [Strept...    55   8e-06 
ref|XP_001025291.1|  RNA methyltransferase, TrmH family prot...    55   8e-06 
ref|YP_400216.1|  probable tRNA/rRNA methyltransferase [Syne...    55   8e-06 
ref|YP_220919.1|  RNA methyltransferase, TrmH family [Brucel...    55   8e-06 
ref|NP_359380.1|  Possible rRNA/tRNA methylase [Streptococcu...    55   8e-06 
ref|NP_697188.1|  RNA methyltransferase, TrmH family [Brucel...    55   8e-06 
ref|NP_763231.1|  rRNA methylase [Vibrio vulnificus CMCP6] >...    55   8e-06 
ref|NP_346400.1|  spoU rRNA Methylase family protein [Strept...    55   8e-06 
ref|YP_413639.1|  tRNA/rRNA methyltransferase (SpoU) [Brucel...    55   8e-06 
ref|YP_171061.1|  probable tRNA/rRNA methyltransferase [Syne...    55   8e-06 
ref|NP_950504.1|  cation transport ATPase [Onion yellows phy...    55   8e-06 
ref|ZP_01171762.1|  23S rRNA methyltransferase [Bacillus sp....    55   8e-06 
gb|EAJ24974.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAH70388.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAD26076.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAG26322.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAC31390.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAF34344.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAF26842.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAE33147.1|  unknown [environmental sequence]                   54   1e-05 
ref|ZP_01616566.1|  tRNA/rRNA methyltransferase (SpoU) [mari...    54   1e-05 
gb|EAT98580.1|  RNA methyltransferase, TrmH family [Campylob...    54   1e-05 
ref|ZP_01251802.1|  rRNA methylase [Psychroflexus torquis AT...    54   1e-05 
emb|CAJ08792.1|  hypothetical protein, conserved [Leishmania...    54   1e-05 
ref|YP_288025.1|  tRNA/rRNA methyltransferase [Mycoplasma hy...    54   1e-05 
ref|YP_085884.1|  23S rRNA methyltransferase [Bacillus cereu...    54   1e-05 
ref|YP_321954.1|  tRNA/rRNA methyltransferase (SpoU) [Anabae...    54   1e-05 
ref|YP_289742.1|  probable tRNA/rRNA methyltransferase [Ther...    54   1e-05 
ref|NP_829088.1|  spoU rRNA methylase family protein [Chlamy...    54   1e-05 
ref|NP_810273.1|  tRNA/rRNA methyltransferase [Bacteroides t...    54   1e-05 
ref|NP_214894.1|  POSSIBLE RNA METHYLTRANSFERASE (RNA METHYL...    54   1e-05 
ref|NP_224726.1|  rRNA Methylase [Chlamydophila pneumoniae C...    54   1e-05 
ref|ZP_01183917.1|  tRNA/rRNA methyltransferase (SpoU) [Baci...    54   1e-05 
ref|ZP_01168021.1|  rRNA methylase SpoU [Oceanospirillum sp....    54   1e-05 
ref|ZP_01683284.1|  hypothetical protein MtubF_02000391 [Myc...    54   1e-05 
gb|EAJ74022.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAJ16625.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAI94644.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAI17162.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAH66261.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAE96506.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAE91253.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAB42639.1|  unknown [environmental sequence]                   54   1e-05 
gb|EAY42629.1|  RNA methyltransferase, TrmH family [Vibrio c...    54   1e-05 
ref|ZP_01470573.1|  putative tRNA (guanosine-2'-O-)-methyltr...    54   1e-05 
ref|YP_627272.1|  23S rRNA methyltransferase [Helicobacter p...    54   1e-05 
ref|YP_594732.1|  rRNA methylases [Lawsonia intracellularis ...    54   1e-05 
ref|YP_377579.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    54   1e-05 
ref|YP_279434.1|  putative tRNA/rRNA methyltransferase [Myco...    54   1e-05 
ref|YP_246291.1|  tRNA/rRNA methyltransferase [Rickettsia fe...    54   1e-05 
ref|YP_116168.1|  hypothetical protein mhp660 [Mycoplasma hy...    54   1e-05 
ref|NP_980981.1|  RNA methyltransferase, TrmH family [Bacill...    54   1e-05 
ref|NP_834268.1|  23S rRNA methyltransferase [Bacillus cereu...    54   1e-05 
ref|NP_230452.1|  RNA methyltransferase, TrmH family [Vibrio...    54   1e-05 
ref|YP_249984.1|  putative rRNA methylase [Corynebacterium j...    54   1e-05 
ref|NP_940412.1|  Putative RNA methylase family protein [Cor...    54   1e-05 
ref|ZP_01199910.1|  putative RNA methyltransferase [Xanthoba...    54   1e-05 
ref|ZP_01117666.1|  RNA methyltransferase, TrmH family prote...    54   1e-05 
ref|ZP_01017993.1|  rRNA methylase [Parvularcula bermudensis...    54   1e-05 
ref|ZP_00886132.1|  rRNA methylase [Caldicellulosiruptor sac...    54   1e-05 
ref|ZP_00755584.1|  COG0566: rRNA methylases [Vibrio cholera...    54   1e-05 
ref|YP_604551.1|  tRNA/rRNA methyltransferase (SpoU) [Deinoc...    54   1e-05 
ref|ZP_00369332.1|  RNA methyltransferase, TrmH family, grou...    54   1e-05 
ref|YP_804221.1|  rRNA methylase [Pediococcus pentosaceus AT...    54   1e-05 
gb|EAK75187.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAJ15367.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAI65627.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAH66216.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAH11717.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAG78303.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAC89823.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAG36169.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAC82453.1|  unknown [environmental sequence]                   54   2e-05 
gb|EAE91174.1|  unknown [environmental sequence]                   54   2e-05 
ref|ZP_01454617.1|  tRNA/rRNA methyltransferase (SpoU) [Ther...    54   2e-05 
ref|ZP_01347869.1|  hypothetical protein RcanM_01000836 [Ric...    54   2e-05 
gb|AAW24848.1|  SJCHGC03201 protein [Schistosoma japonicum]        54   2e-05 
gb|AAV48972.1|  hypothetical RNA methyltransferase [Weissell...    54   2e-05 
gb|AAM82703.1|  rRNA methylase-like protein [Synechococcus s...    54   2e-05 
ref|YP_156756.1|  rRNA methylase SpoU [Idiomarina loihiensis...    54   2e-05 
ref|YP_005681.1|  23S rRNA methyltransferase [Thermus thermo...    54   2e-05 
ref|NP_905938.1|  RNA methyltransferase, TrmH family [Porphy...    54   2e-05 
ref|NP_946542.1|  putative RNA methyltransferase [Rhodopseud...    54   2e-05 
ref|ZP_01105046.1|  putative tRNA/rRNA methyltransferase [Fl...    54   2e-05 
ref|ZP_00778618.1|  tRNA/rRNA methyltransferase (SpoU) [Ther...    54   2e-05 
ref|YP_721951.1|  tRNA/rRNA methyltransferase (SpoU) [Tricho...    54   2e-05 
gb|EAJ70498.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAI78211.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAH27163.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAG40892.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAF23909.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAF03829.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAE69092.1|  unknown [environmental sequence]                   53   2e-05 
gb|EAD85684.1|  unknown [environmental sequence]                   53   2e-05 
ref|YP_968357.1|  RNA methyltransferase, TrmH family, group ...    53   2e-05 
ref|YP_904351.1|  RNA methyltransferase [Mycobacterium ulcer...    53   2e-05 
ref|XP_419559.2|  PREDICTED: similar to TAR RNA loop binding...    53   2e-05 
ref|ZP_01514305.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    53   2e-05 
dbj|BAF02030.1|  hypothetical protein [Arabidopsis thaliana]       53   2e-05 
ref|YP_038610.1|  23S rRNA methyltransferase [Bacillus thuri...    53   2e-05 
ref|YP_396915.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    53   2e-05 
ref|YP_278481.1|  putative tRNA/rRNA methyltransferase [Myco...    53   2e-05 
ref|YP_198319.1|  rRNA methylase [Wolbachia endosymbiont str...    53   2e-05 
ref|YP_009267.1|  RNA methyltransferase, TrmH family, group ...    53   2e-05 
ref|NP_970667.1|  RNA methyltransferase, TrmH family [Trepon...    53   2e-05 
ref|NP_624146.1|  rRNA methylase [Thermoanaerobacter tengcon...    53   2e-05 
ref|NP_193496.1|  RNA binding / RNA methyltransferase [Arabi...    53   2e-05 
ref|ZP_01102783.1|  SpoU rRNA methylase family protein [gamm...    53   2e-05 
ref|ZP_00660566.1|  tRNA (guanosine-2'-O-)-methyltransferase...    53   2e-05 
ref|XP_960584.1|  hypothetical protein [Neurospora crassa OR...    53   2e-05 
ref|YP_722773.1|  tRNA/rRNA methyltransferase (SpoU) [Tricho...    53   2e-05 
ref|NP_847008.1|  RNA methyltransferase, TrmH family [Bacill...    53   2e-05 
gb|EAJ24877.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAJ11069.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAG61293.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAG39638.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAG21449.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAC27932.1|  unknown [environmental sequence]                   53   3e-05 
gb|EAF28186.1|  unknown [environmental sequence]                   53   3e-05 
ref|ZP_01673560.1|  S-adenosylmethionine-dependent methyltra...    53   3e-05 
ref|ZP_01469545.1|  tRNA (guanosine-2'-O-)-methyltransferase...    53   3e-05 
ref|YP_267533.1|  RNA methyltransferase, TrmH family [Colwel...    53   3e-05 
ref|NP_892540.1|  tRNA/rRNA methyltransferase (SpoU) [Prochl...    53   3e-05 
ref|XP_815672.1|  hypothetical protein [Trypanosoma cruzi st...    53   3e-05 
ref|XP_804694.1|  hypothetical protein [Trypanosoma cruzi st...    53   3e-05 
ref|YP_912592.1|  tRNA/rRNA methyltransferase (SpoU) [Chloro...    53   3e-05 
gb|EAK14734.1|  unknown [environmental sequence]                   52   4e-05 
gb|EAJ20434.1|  unknown [environmental sequence]                   52   4e-05 
gb|EAI63111.1|  unknown [environmental sequence]                   52   4e-05 
gb|EAI45837.1|  unknown [environmental sequence]                   52   4e-05 
gb|EAG80521.1|  unknown [environmental sequence]                   52   4e-05 
gb|EAC69917.1|  unknown [environmental sequence]                   52   4e-05 
ref|YP_001008868.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    52   4e-05 
ref|ZP_01648535.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    52   4e-05 
ref|ZP_01385801.1|  tRNA (guanosine-2'-O-)-methyltransferase...    52   4e-05 
ref|ZP_01376940.1|  hypothetical protein Ccur5_01000247 [Cam...    52   4e-05 
ref|ZP_01314656.1|  hypothetical protein Wendoof_01000527 [W...    52   4e-05 
ref|NP_539346.1|  23S ribosomal RNA methyltransferase [Bruce...    52   4e-05 
ref|NP_207348.1|  hypothetical protein HP0553 [Helicobacter ...    52   4e-05 
ref|YP_148562.1|  rRNA methylase [Geobacillus kaustophilus H...    52   4e-05 
ref|YP_143541.1|  RNA 2'-O ribose methyltransferase [Thermus...    52   4e-05 
emb|CAG09449.1|  unnamed protein product [Tetraodon nigrovir...    52   4e-05 
ref|YP_225675.1|  23S RIBOSOMAL RNA METHYLTRANSFERASE [Coryn...    52   4e-05 
ref|NP_787474.1|  tRNA/rRNA methyltransferase [Tropheryma wh...    52   4e-05 
ref|ZP_00858293.1|  tRNA/rRNA methyltransferase [Bradyrhizob...    52   4e-05 
ref|YP_568440.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodop...    52   4e-05 
ref|XP_642670.1|  hypothetical protein DDBDRAFT_0169271 [Dic...    52   4e-05 
gb|EAK65884.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAJ20442.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAI97109.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAC90859.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAB64610.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAE60783.1|  unknown [environmental sequence]                   52   5e-05 
gb|EAB00210.1|  unknown [environmental sequence]                   52   5e-05 
ref|ZP_01519690.1|  tRNA/rRNA methyltransferase (SpoU) [Coma...    52   5e-05 
ref|YP_664653.1|  putative rRNA methylase [Helicobacter acin...    52   5e-05 
ref|ZP_01374548.1|  hypothetical protein Ccon1_01000791 [Cam...    52   5e-05 
ref|NP_759829.1|  rRNA methylase [Vibrio vulnificus CMCP6] >...    52   5e-05 
ref|NP_966682.1|  RNA methyltransferase, TrmH family, group ...    52   5e-05 
ref|NP_965433.1|  hypothetical protein LJ1627 [Lactobacillus...    52   5e-05 
ref|YP_515709.1|  tRNA/rRNA methyltransferase [Chlamydophila...    52   5e-05 
ref|YP_513278.1|  tRNA/rRNA methyltransferase [Francisella t...    52   5e-05 
ref|ZP_01475996.1|  hypothetical protein VEx2w_02001360 [Vib...    52   5e-05 
ref|ZP_00589682.1|  tRNA (guanosine-2'-O-)-methyltransferase...    52   5e-05 
ref|ZP_00539220.1|  tRNA/rRNA methyltransferase (SpoU) [Exig...    52   5e-05 
ref|YP_815194.1|  rRNA methylase [Lactobacillus gasseri ATCC...    52   5e-05 
gb|EAI36614.1|  unknown [environmental sequence]                   52   6e-05 
gb|EAG74357.1|  unknown [environmental sequence]                   52   6e-05 
gb|EAD25997.1|  unknown [environmental sequence]                   52   6e-05 
gb|EAC91176.1|  unknown [environmental sequence]                   52   6e-05 
gb|EAE93799.1|  unknown [environmental sequence]                   52   6e-05 
ref|ZP_01302040.1|  tRNA/rRNA methyltransferase [Sphingomona...    52   6e-05 
ref|YP_456664.1|  23S rRNA methyltransferase [Aster yellows ...    52   6e-05 
ref|NP_661772.1|  tRNA methyltransferase SpoU [Chlorobium te...    52   6e-05 
ref|YP_118127.1|  putative ribosomal RNA methyltransferase [...    52   6e-05 
ref|NP_893416.1|  tRNA/rRNA methyltransferase (SpoU) [Prochl...    52   6e-05 
ref|ZP_01189662.1|  tRNA/rRNA methyltransferase (SpoU) [Halo...    52   6e-05 
ref|ZP_01108510.1|  putative RNA methylase [Alteromonas macl...    52   6e-05 
ref|ZP_01106038.1|  spoU protein [Flavobacteriales bacterium...    52   6e-05 
ref|ZP_01085968.1|  putative tRNA (guanosine-2'-O-)-methyltr...    52   6e-05 
ref|ZP_01081407.1|  putative tRNA (guanosine-2'-O-)-methyltr...    52   6e-05 
ref|ZP_01064070.1|  RNA methyltransferase, TrmH family prote...    52   6e-05 
gb|EAK49025.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAJ07045.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAI21574.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAI20871.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAH24550.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAD53724.1|  unknown [environmental sequence]                   51   8e-05 
gb|EAE47490.1|  unknown [environmental sequence]                   51   8e-05 
emb|CAK72213.1|  unnamed protein product [Paramecium tetraur...    51   8e-05 
ref|ZP_01513590.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    51   8e-05 
ref|ZP_01430840.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    51   8e-05 
ref|ZP_01432186.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    51   8e-05 
ref|YP_559310.1|  Putative RNA methylase [Burkholderia xenov...    51   8e-05 
ref|NP_933033.1|  rRNA methylase [Vibrio vulnificus YJ016] >...    51   8e-05 
ref|YP_926143.1|  tRNA guanosine-2'-O-methyltransferase [She...    51   8e-05 
gb|EAH37330.1|  unknown [environmental sequence]                   51   1e-04 
gb|EAD15698.1|  unknown [environmental sequence]                   51   1e-04 
gb|EAC49406.1|  unknown [environmental sequence]                   51   1e-04 
gb|EAB71196.1|  unknown [environmental sequence]                   51   1e-04 
ref|ZP_01439362.1|  rRNA methylase protein, TrmH family [Ful...    51   1e-04 
ref|YP_527183.1|  von Willebrand factor, type A [Saccharopha...    51   1e-04 
ref|NP_702162.1|  hypothetical protein PF14_0273 [Plasmodium...    51   1e-04 
ref|YP_460295.1|  23S rRNA methyltransferase [Syntrophus aci...    51   1e-04 
ref|ZP_01061507.1|  putative rRNA methylase [Flavobacterium ...    51   1e-04 
ref|ZP_01061179.1|  spoU protein [Flavobacterium sp. MED217]...    51   1e-04 
gb|EAH53072.1|  unknown [environmental sequence]                   50   1e-04 
gb|EAD41451.1|  unknown [environmental sequence]                   50   1e-04 
gb|EAD14103.1|  unknown [environmental sequence]                   50   1e-04 
ref|YP_933397.1|  RNA methyltransferase [Azoarcus sp. BH72] ...    50   1e-04 
ref|ZP_01614600.1|  RNA methyltransferase, TrmH family prote...    50   1e-04 
ref|ZP_01411558.1|  putative tRNA/rRNA methyltransferase pro...    50   1e-04 
gb|EAT82702.1|  hypothetical protein SNOG_10367 [Phaeosphaer...    50   1e-04 
ref|YP_692533.1|  RNA methyltransferase, TrmH family, group ...    50   1e-04 
ref|YP_484820.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodop...    50   1e-04 
ref|NP_874815.1|  rRNA methylase [Prochlorococcus marinus su...    50   1e-04 
ref|NP_853280.1|  SpoU [Mycoplasma gallisepticum R] >gi|3154...    50   1e-04 
ref|YP_290119.1|  putative rRNA methylase [Thermobifida fusc...    50   1e-04 
ref|ZP_01179130.1|  tRNA/rRNA methyltransferase (SpoU) [Baci...    50   1e-04 
ref|ZP_01130117.1|  rRNA methyltransferase [marine actinobac...    50   1e-04 
ref|ZP_01121953.1|  spoU protein [Robiginitalea biformata HT...    50   1e-04 
ref|ZP_00988262.1|  RNA methyltransferase, TrmH family [Vibr...    50   1e-04 
ref|ZP_00951282.1|  SpoU rRNA methylase family protein [Croc...    50   1e-04 
ref|YP_530812.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodop...    50   1e-04 
ref|ZP_01487013.1|  hypothetical protein VchoV5_02000365 [Vi...    50   1e-04 
ref|YP_001021158.1|  putative tRNA/rRNA methyltransferase pr...    50   1e-04 
gb|EAI24381.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAH91339.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAG96471.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAD36647.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAA97751.1|  unknown [environmental sequence]                   50   2e-04 
ref|ZP_01549350.1|  RNA methyltransferase [Stappia aggregata...    50   2e-04 
ref|YP_397891.1|  tRNA/rRNA methyltransferase (SpoU) [Prochl...    50   2e-04 
ref|YP_194371.1|  rRNA methylase [Lactobacillus acidophilus ...    50   2e-04 
ref|YP_219639.1|  4.2.3 [Chlamydophila abortus S26/3] >gi|62...    50   2e-04 
ref|ZP_00532126.1|  tRNA (guanosine-2'-O-)-methyltransferase...    50   2e-04 
ref|ZP_00372541.1|  RNA methyltransferase, TrmH family, grou...    50   2e-04 
ref|ZP_00373774.1|  RNA methyltransferase, TrmH family, grou...    50   2e-04 
ref|ZP_00367806.1|  RNA methyltransferase, TrmH family, grou...    50   2e-04 
gb|EAJ08552.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAI94900.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAI76868.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAH50514.1|  unknown [environmental sequence]                   50   2e-04 
gb|EAD18379.1|  unknown [environmental sequence]                   50   2e-04 
ref|ZP_01543687.1|  rRNA methylase [Oenococcus oeni ATCC BAA...    50   2e-04 
ref|YP_810497.1|  rRNA methylase [Oenococcus oeni PSU-1] >gi...    50   2e-04 
ref|ZP_01431062.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    50   2e-04 
ref|YP_729908.1|  tRNA/rRNA methyltransferase [Synechococcus...    50   2e-04 
ref|ZP_01243734.1|  tRNA/rRNA methyltransferase (SpoU) [Flav...    50   2e-04 
ref|ZP_01226942.1|  putative RNA methylase [Aurantimonas sp....    50   2e-04 
ref|YP_456772.1|  23S rRNA methyltransferase [Aster yellows ...    50   2e-04 
ref|NP_816051.1|  RNA methyltransferase, TrmH family [Entero...    50   2e-04 
ref|NP_812077.1|  tRNA/rRNA methyltransferase [Bacteroides t...    50   2e-04 
ref|NP_223218.1|  hypothetical protein jhp0500 [Helicobacter...    50   2e-04 
ref|YP_222263.1|  RNA methyltransferase, TrmH family [Brucel...    50   2e-04 
ref|NP_950396.1|  rRNA methylase [Onion yellows phytoplasma ...    50   2e-04 
ref|NP_880176.1|  putative RNA methyltransferase [Bordetella...    50   2e-04 
ref|NP_883832.1|  putative RNA methyltransferase [Bordetella...    50   2e-04 
ref|NP_010171.1|  2'-O-ribose methyltransferase, catalyzes t...    50   2e-04 
emb|CAA64900.1|  ORF 2310 [Saccharomyces cerevisiae] >gi|190...    50   2e-04 
ref|ZP_01196600.1|  spoU rRNA methylase family protein [Xant...    50   2e-04 
ref|ZP_00143511.1|  23S rRNA methyltransferase [Fusobacteriu...    50   2e-04 
gb|EAB97178.1|  unknown [environmental sequence]                   49   3e-04 
gb|EAB44889.1|  unknown [environmental sequence]                   49   3e-04 
ref|ZP_01618986.1|  spoU protein [Lyngbya sp. PCC 8106] >gi|...    49   3e-04 
ref|ZP_01308767.1|  tRNA/rRNA methyltransferase [Candidatus ...    49   3e-04 
ref|ZP_01201069.1|  tRNA/rRNA  methyltransferase, SpoU famil...    49   3e-04 
gb|AAV29540.1|  NT02FT1642 [synthetic construct]                   49   3e-04 
ref|YP_381125.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    49   3e-04 
ref|NP_861277.1|  hypothetical protein HH1746 [Helicobacter ...    49   3e-04 
ref|YP_169479.1|  tRNA/rRNA methyltransferase [Francisella t...    49   3e-04 
ref|YP_048167.1|  putative tRNA (guanosine-2'-O)-methyltrans...    49   3e-04 
ref|NP_739213.1|  putative RNA methyltransferase [Corynebact...    49   3e-04 
ref|ZP_01107226.1|  putative tRNA/rRNA methyltransferase [Fl...    49   3e-04 
ref|ZP_01060340.1|  tRNA/rRNA methyltransferase [Flavobacter...    49   3e-04 
ref|ZP_01475060.1|  hypothetical protein VEx2w_02002385 [Vib...    49   3e-04 
ref|YP_911658.1|  tRNA guanosine-2'-O-methyltransferase [Chl...    49   3e-04 
ref|XP_638091.1|  hypothetical protein DDBDRAFT_0186533 [Dic...    49   3e-04 
gb|EAI76806.1|  unknown [environmental sequence]                   49   4e-04 
gb|EAB57981.1|  unknown [environmental sequence]                   49   4e-04 
gb|EAE81720.1|  unknown [environmental sequence]                   49   4e-04 
ref|YP_001011774.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    49   4e-04 
ref|ZP_01413336.1|  putative tRNA/rRNA methyltransferase pro...    49   4e-04 
ref|ZP_01215315.1|  RNA methyltransferase, TrmH family prote...    49   4e-04 
ref|XP_343951.2|  PREDICTED: similar to Y45F3A.9 [Rattus nor...    49   4e-04 
ref|XP_685526.1|  PREDICTED: similar to methyltransferase (3...    49   4e-04 
ref|XP_691554.1|  PREDICTED: similar to methyltransferase (3...    49   4e-04 
ref|NP_603772.1|  23S rRNA methyltransferase [Fusobacterium ...    49   4e-04 
ref|NP_421117.1|  spoU rRNA methylase family protein [Caulob...    49   4e-04 
ref|YP_121603.1|  putative RNA methyltransferase [Nocardia f...    49   4e-04 
ref|YP_007140.1|  hypothetical protein pc0141 [Candidatus Pr...    49   4e-04 
ref|NP_736090.1|  hypothetical protein gbs1655 [Streptococcu...    49   4e-04 
ref|ZP_00790538.1|  RNA methyltransferase, TrmH family [Stre...    49   4e-04 
ref|ZP_00784377.1|  RNA methyltransferase, TrmH family, grou...    49   4e-04 
ref|YP_659936.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    49   4e-04 
ref|YP_676210.1|  tRNA/rRNA methyltransferase (SpoU) [Mesorh...    49   4e-04 
gb|EAI74337.1|  unknown [environmental sequence]                   49   5e-04 
gb|EAF31759.1|  unknown [environmental sequence]                   49   5e-04 
emb|CAK73558.1|  unnamed protein product [Paramecium tetraur...    49   5e-04 
ref|YP_001009888.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    49   5e-04 
dbj|BAD87895.1|  putative tRNA/rRNA methyltransferase [Oryza...    49   5e-04 
ref|XP_447250.1|  unnamed protein product [Candida glabrata]...    49   5e-04 
ref|YP_005836.1|  tRNA (Guanosine-2'-O-)-methyltransferase [...    49   5e-04 
ref|NP_600607.2|  rRNA methylase [Corynebacterium glutamicum...    49   5e-04 
ref|ZP_01048858.1|  spoU protein [Cellulophaga sp. MED134] >...    49   5e-04 
ref|ZP_00782884.1|  RNA methyltransferase, TrmH family [Stre...    49   5e-04 
ref|ZP_00788838.1|  RNA methyltransferase, TrmH family [Stre...    49   5e-04 
ref|YP_923792.1|  tRNA/rRNA methyltransferase (SpoU) [Nocard...    49   5e-04 
ref|ZP_00511987.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    49   5e-04 
ref|XP_710551.1|  putative tRNA ribose methyltransferase [Ca...    49   5e-04 
ref|NP_688597.1|  RNA methyltransferase, TrmH family [Strept...    49   5e-04 
ref|NP_281364.1|  putative rRNA methylase [Campylobacter jej...    49   5e-04 
gb|EAI55451.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAI09401.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC94655.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC93774.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC84533.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC84430.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC83912.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAG17443.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAC10455.1|  unknown [environmental sequence]                   48   7e-04 
gb|EAB73881.1|  unknown [environmental sequence]                   48   7e-04 
ref|YP_959999.1|  tRNA guanosine-2'-O-methyltransferase [Mar...    48   7e-04 
ref|YP_861137.1|  TrmH family tRNA/rRNA methyltransferase [G...    48   7e-04 
ref|ZP_01253291.1|  putative tRNA/rRNA methyltransferase [Ps...    48   7e-04 
ref|YP_374227.1|  SpoU rRNA methylase family protein [Pelodi...    48   7e-04 
ref|NP_983802.1|  ADL294Cp [Ashbya gossypii ATCC 10895] >gi|...    48   7e-04 
ref|NP_623287.1|  rRNA methylase [Thermoanaerobacter tengcon...    48   7e-04 
ref|NP_384496.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTE...    48   7e-04 
ref|ZP_01071989.1|  RNA methyltransferase, TrmH family [Camp...    48   7e-04 
ref|ZP_01042984.1|  rRNA methylase SpoU [Idiomarina baltica ...    48   7e-04 
ref|ZP_01038905.1|  rRNA methylase [Erythrobacter sp. NAP1] ...    48   7e-04 
ref|ZP_00767908.1|  tRNA/rRNA methyltransferase (SpoU) [Chlo...    48   7e-04 
ref|YP_138786.1|  rRNA methyltransferase [Streptococcus ther...    48   7e-04 
ref|XP_727099.1|  hypothetical protein PY06442 [Plasmodium y...    48   7e-04 
ref|ZP_00053233.1|  COG0566: rRNA methylases [Magnetospirill...    48   7e-04 
gb|EAE79997.1|  unknown [environmental sequence]                   48   0.001 
ref|YP_885145.1|  spou rRNA methylase family protein [Mycoba...    48   0.001 
ref|ZP_01504113.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    48   0.001 
ref|YP_860439.1|  TrmH family tRNA/rRNA methyltransferase [G...    48   0.001 
emb|CAJ49357.1|  putative RNA methyltransferase [Bordetella ...    48   0.001 
ref|YP_726508.1|  23S rRNA methyltransferase [Ralstonia eutr...    48   0.001 
ref|ZP_01355810.1|  tRNA/rRNA methyltransferase (SpoU) [Rose...    48   0.001 
ref|YP_292947.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    48   0.001 
ref|YP_140675.1|  rRNA methyltransferase [Streptococcus ther...    48   0.001 
ref|YP_290320.1|  putative rRNA methylase [Thermobifida fusc...    48   0.001 
ref|YP_097284.1|  tRNA/rRNA methyltransferase [Bacteroides f...    48   0.001 
ref|NP_889157.1|  putative RNA methyltransferase [Bordetella...    48   0.001 
ref|NP_301995.1|  putative rRNA methyltransferase [Mycobacte...    48   0.001 
ref|ZP_01122307.1|  rRNA methylase [Robiginitalea biformata ...    48   0.001 
ref|ZP_01059855.1|  putative tRNA/rRNA methyltransferase [Fl...    48   0.001 
gb|EAK01538.1|  unknown [environmental sequence]                   47   0.001 
gb|EAG89117.1|  unknown [environmental sequence]                   47   0.001 
gb|EAD37222.1|  unknown [environmental sequence]                   47   0.001 
gb|EAG30655.1|  unknown [environmental sequence]                   47   0.001 
gb|EAB94209.1|  unknown [environmental sequence]                   47   0.001 
ref|YP_001010799.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    47   0.001 
ref|ZP_01428941.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    47   0.001 
ref|ZP_01252140.1|  tRNA/rRNA methyltransferase [Psychroflex...    47   0.001 
ref|XP_462280.1|  hypothetical protein DEHA0G18161g [Debaryo...    47   0.001 
gb|AAP55640.1|  rRNA methylase [Spiroplasma citri] >gi|11000...    47   0.001 
ref|NP_531047.1|  rRNA methylase [Agrobacterium tumefaciens ...    47   0.001 
ref|NP_533113.1|  RNA methylase [Agrobacterium tumefaciens s...    47   0.001 
ref|YP_412557.1|  tRNA/rRNA methyltransferase (SpoU) [Nitros...    47   0.001 
ref|YP_319223.1|  tRNA/rRNA methyltransferase (SpoU) [Nitrob...    47   0.001 
ref|YP_271614.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    47   0.001 
ref|YP_425457.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodos...    47   0.001 
ref|NP_355393.1|  hypothetical protein AGR_C_4428 [Agrobacte...    47   0.001 
ref|NP_294741.1|  rRNA methylase [Deinococcus radiodurans R1...    47   0.001 
ref|NP_353372.1|  hypothetical protein AGR_C_593 [Agrobacter...    47   0.001 
ref|YP_339598.1|  RNA methyltransferase, TrmH [Pseudoalterom...    47   0.001 
ref|NP_625873.1|  rRNA methylase [Streptomyces coelicolor A3...    47   0.001 
ref|NP_785154.1|  rRNA methylase [Lactobacillus plantarum WC...    47   0.001 
ref|ZP_00995343.1|  rRNA methyltransferase [Janibacter sp. H...    47   0.001 
ref|ZP_00590989.1|  tRNA/rRNA methyltransferase (SpoU) [Pros...    47   0.001 
gb|EAJ27792.1|  unknown [environmental sequence]                   47   0.002 
gb|EAC99578.1|  unknown [environmental sequence]                   47   0.002 
gb|EAG45671.1|  unknown [environmental sequence]                   47   0.002 
ref|YP_001014307.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    47   0.002 
ref|YP_989293.1|  RNA methyltransferase, TrmH family [Barton...    47   0.002 
ref|YP_861688.1|  TrmH family tRNA/rRNA methyltransferase [G...    47   0.002 
ref|YP_860307.1|  TrmH family tRNA/rRNA methyltransferase [G...    47   0.002 
ref|YP_970196.1|  tRNA/rRNA methyltransferase (SpoU) [Acidov...    47   0.002 
emb|CAH94293.1|  putative rRNA methylase [Streptomyces grise...    47   0.002 
ref|YP_467942.1|  rRNA methylase protein, TrmH family [Rhizo...    47   0.002 
ref|YP_442566.1|  RNA methyltransferase, TrmH family [Burkho...    47   0.002 
ref|YP_375160.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    47   0.002 
ref|NP_901700.1|  probable tRNA methyltransferase [Chromobac...    47   0.002 
ref|YP_395990.1|  Putative tRNA/rRNA methyltransferase [Lact...    47   0.002 
ref|XP_679311.1|  hypothetical protein PB000715.00.0 [Plasmo...    47   0.002 
ref|YP_047206.1|  putative tRNA/rRNA methyltransferase [Acin...    47   0.002 
ref|YP_031740.1|  tRNA/rRNA methyltransferase [Bartonella qu...    47   0.002 
ref|ZP_01117327.1|  putative SpoU rRNA methylase family prot...    47   0.002 
ref|ZP_01092496.1|  putative rRNA methylase [Blastopirellula...    47   0.002 
ref|ZP_00801353.1|  RNA methyltransferase TrmH, group 3 [Alk...    47   0.002 
ref|YP_178173.1|  RNA methyltransferase, TrmH family [Campyl...    47   0.002 
gb|EAK57879.1|  unknown [environmental sequence]                   47   0.002 
gb|EAJ40858.1|  unknown [environmental sequence]                   47   0.002 
gb|EAJ28479.1|  unknown [environmental sequence]                   47   0.002 
gb|EAI37551.1|  unknown [environmental sequence]                   47   0.002 
gb|EAC39178.1|  unknown [environmental sequence]                   47   0.002 
gb|EAF53469.1|  unknown [environmental sequence]                   47   0.002 
gb|EAB99494.1|  unknown [environmental sequence]                   47   0.002 
gb|EAB57210.1|  unknown [environmental sequence]                   47   0.002 
ref|ZP_01668335.1|  tRNA/rRNA methyltransferase (SpoU) [Anae...    47   0.002 
ref|ZP_01260253.1|  tRNA methyltransferase [Vibrio alginolyt...    47   0.002 
ref|ZP_01247466.1|  tRNA/rRNA methyltransferase (SpoU) [Flav...    47   0.002 
ref|YP_470829.1|  probable RNA methylase protein [Rhizobium ...    47   0.002 
ref|YP_061662.1|  rRNA methyltransferase [Leifsonia xyli sub...    47   0.002 
ref|YP_163063.1|  rRNA methylase [Zymomonas mobilis subsp. m...    47   0.002 
ref|YP_250618.1|  putative rRNA methylase [Corynebacterium j...    47   0.002 
ref|NP_385928.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTE...    47   0.002 
ref|YP_989621.1|  RNA methyltransferase, TrmH family [Barton...    47   0.002 
ref|ZP_01124724.1|  tRNA (guanosine-2'-O-)-methyltransferase...    47   0.002 
ref|ZP_01050294.1|  putative tRNA/rRNA methyltransferase [Ce...    47   0.002 
ref|ZP_00951102.1|  putative tRNA/rRNA methyltransferase [Cr...    47   0.002 
ref|ZP_00880271.1|  COG0566: rRNA methylases [Mycobacterium ...    47   0.002 
ref|YP_779883.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodop...    47   0.002 
gb|EAH45516.1|  unknown [environmental sequence]                   46   0.003 
gb|EAG20506.1|  unknown [environmental sequence]                   46   0.003 
gb|EAC00462.1|  unknown [environmental sequence]                   46   0.003 
gb|EAE56316.1|  unknown [environmental sequence]                   46   0.003 
ref|ZP_01447540.1|  spoU rRNA methylase family protein [alph...    46   0.003 
ref|ZP_01378104.1|  hypothetical protein Cjejd_01001299 [Cam...    46   0.003 
ref|YP_467380.1|  tRNA/rRNA methyltransferase, SpoU [Anaerom...    46   0.003 
ref|NP_849992.1|  RNA binding / RNA methyltransferase [Arabi...    46   0.003 
gb|AAC62129.1|  hypothetical protein [Arabidopsis thaliana]        46   0.003 
emb|CAB37542.1|  hypothetical protein [Arabidopsis thaliana]...    46   0.003 
ref|YP_063092.1|  tRNA/rRNA methyltransferase [Leifsonia xyl...    46   0.003 
ref|XP_852880.1|  PREDICTED: similar to Y45F3A.9 [Canis fami...    46   0.003 
ref|YP_218654.1|  putative tRNA/rRNA methyltransferase [Salm...    46   0.003 
ref|YP_162687.1|  RNA methyltransferase [Zymomonas mobilis s...    46   0.003 
ref|NP_722052.1|  putative rRNA methylase [Streptococcus mut...    46   0.003 
ref|NP_868409.1|  putative rRNA methylase [Rhodopirellula ba...    46   0.003 
ref|NP_195515.2|  RNA binding / RNA methyltransferase [Arabi...    46   0.003 
ref|NP_796537.1|  tRNA methyltransferase [Vibrio parahaemoly...    46   0.003 
ref|NP_458184.1|  tRNA (guanosine-2'-O)-methyltransferase [S...    46   0.003 
ref|ZP_00996457.1|  tRNA/rRNA methyltransferase [Janibacter ...    46   0.003 
ref|ZP_00661391.1|  tRNA/rRNA methyltransferase (SpoU) [Pros...    46   0.003 
gb|EAI52596.1|  unknown [environmental sequence]                   46   0.003 
gb|EAD68043.1|  unknown [environmental sequence]                   46   0.003 
gb|EAF61255.1|  unknown [environmental sequence]                   46   0.003 
gb|EAB53822.1|  unknown [environmental sequence]                   46   0.003 
gb|EAE98806.1|  unknown [environmental sequence]                   46   0.003 
gb|EAE80127.1|  unknown [environmental sequence]                   46   0.003 
ref|ZP_01646519.1|  tRNA/rRNA methyltransferase (SpoU) [Sali...    46   0.003 
ref|ZP_01537412.1|  tRNA/rRNA methyltransferase (SpoU) [Serr...    46   0.003 
ref|YP_769342.1|  putative rRNA methyltransferase [Rhizobium...    46   0.003 
ref|NP_827916.1|  rRNA methyltransferase [Streptomyces averm...    46   0.003 
ref|YP_482265.1|  tRNA/rRNA methyltransferase [Frankia sp. C...    46   0.003 
ref|NP_297057.1|  spoU rRNA methylase family protein [Chlamy...    46   0.003 
ref|NP_219913.1|  rRNA Methylase (SpoU family) [Chlamydia tr...    46   0.003 
ref|NP_295933.1|  rRNA methylase SpoU [Deinococcus radiodura...    46   0.003 
emb|CAI59983.1|  putative tRNA/mRNA methyltransferase [Strep...    46   0.003 
ref|NP_663408.2|  mitochondrial rRNA methyltransferase 1 hom...    46   0.003 
ref|XP_502679.1|  hypothetical protein [Yarrowia lipolytica]...    46   0.003 
ref|NP_078161.1|  rRNA methylase [Ureaplasma parvum serovar ...    46   0.003 
ref|NP_103994.1|  RNA methyltransferase [Mesorhizobium loti ...    46   0.003 
ref|ZP_01053402.1|  tRNA/rRNA methyltransferase [Tenacibacul...    46   0.003 
ref|ZP_00825836.1|  COG0566: rRNA methylases [Yersinia molla...    46   0.003 
ref|ZP_00822462.1|  COG0566: rRNA methylases [Yersinia berco...    46   0.003 
gb|EAJ89278.1|  unknown [environmental sequence]                   45   0.005 
gb|EAJ87793.1|  unknown [environmental sequence]                   45   0.005 
gb|EAI43193.1|  unknown [environmental sequence]                   45   0.005 
gb|EAH33952.1|  unknown [environmental sequence]                   45   0.005 
gb|EAC84180.1|  unknown [environmental sequence]                   45   0.005 
ref|ZP_01606093.1|  tRNA/rRNA methyltransferase (SpoU) [Sphi...    45   0.005 
ref|ZP_01608267.1|  tRNA/rRNA methyltransferase (SpoU) [Sphi...    45   0.005 
ref|YP_759058.1|  RNA methyltransferase, TrmH family [Hyphom...    45   0.005 
ref|YP_704920.1|  probable RNA methyltransferase [Rhodococcu...    45   0.005 
ref|YP_755966.1|  tRNA/rRNA methyltransferase (SpoU) [Marica...    45   0.005 
ref|YP_676779.1|  RNA methylase, SpoU family [Cytophaga hutc...    45   0.005 
ref|ZP_01302123.1|  rRNA methylase [Sphingomonas sp. SKA58] ...    45   0.005 
ref|YP_392859.1|  tRNA/rRNA methyltransferase (SpoU) [Thiomi...    45   0.005 
ref|YP_535703.1|  23S rRNA methyltransferase [Lactobacillus ...    45   0.005 
ref|YP_457310.1|  rRNA methylase [Erythrobacter litoralis HT...    45   0.005 
ref|XP_742256.1|  hypothetical protein PC000031.00.0 [Plasmo...    45   0.005 
ref|YP_227009.1|  SPOU RRNA METHYLASE FAMILY PROTEIN [Coryne...    45   0.005 
ref|NP_601966.1|  rRNA methylase [Corynebacterium glutamicum...    45   0.005 
ref|ZP_01119375.1|  putative SpoU rRNA methylase family prot...    45   0.005 
ref|ZP_00951027.1|  spoU protein (spoU) [Croceibacter atlant...    45   0.005 
ref|ZP_00366304.1|  COG0566: rRNA methylases [Streptococcus ...    45   0.005 
gb|EAK63934.1|  unknown [environmental sequence]                   45   0.006 
gb|EAK10957.1|  unknown [environmental sequence]                   45   0.006 
gb|EAJ75461.1|  unknown [environmental sequence]                   45   0.006 
gb|EAF44730.1|  unknown [environmental sequence]                   45   0.006 
gb|EAB71837.1|  unknown [environmental sequence]                   45   0.006 
gb|EAB56238.1|  unknown [environmental sequence]                   45   0.006 
gb|EAA79777.1|  unknown [environmental sequence]                   45   0.006 
ref|YP_001004440.1|  tRNA (guanosine-2'-O-)-methyltransferas...    45   0.006 
ref|ZP_01589659.1|  tRNA/rRNA methyltransferase (SpoU) [Ente...    45   0.006 
emb|CAJ67531.1|  putative RNA methylase [Clostridium diffici...    45   0.006 
ref|YP_996232.1|  tRNA/rRNA methyltransferase (SpoU) [Vermin...    45   0.006 
ref|YP_944515.1|  tRNA/rRNA methyltransferase (SpoU) [Psychr...    45   0.006 
ref|YP_496482.1|  tRNA/rRNA methyltransferase [Novosphingobi...    45   0.006 
emb|CAB62290.1|  hypothetical protein [Zygosaccharomyces rou...    45   0.006 
ref|XP_001020500.1|  RNA methyltransferase, TrmH family prot...    45   0.006 
ref|YP_080163.1|  putative RNA methylase YsgA [Bacillus lich...    45   0.006 
ref|NP_470518.1|  hypothetical protein lin1181 [Listeria inn...    45   0.006 
ref|ZP_01045261.1|  tRNA/rRNA methyltransferase (SpoU) [Nitr...    45   0.006 
ref|NP_464743.1|  hypothetical protein lmo1218 [Listeria mon...    45   0.006 
gb|EAH45792.1|  unknown [environmental sequence]                   45   0.008 
gb|EAH32858.1|  unknown [environmental sequence]                   45   0.008 
gb|EAG85305.1|  unknown [environmental sequence]                   45   0.008 
gb|EAC15970.1|  unknown [environmental sequence]                   45   0.008 
gb|EAF36656.1|  unknown [environmental sequence]                   45   0.008 
gb|EAE39088.1|  unknown [environmental sequence]                   45   0.008 
gb|EAD83792.1|  unknown [environmental sequence]                   45   0.008 
ref|XP_604646.3|  PREDICTED: similar to mitochondrial rRNA m...    45   0.008 
ref|YP_766018.1|  putative rRNA methyltransferase [Rhizobium...    45   0.008 
ref|NP_827973.1|  rRNA methylase [Streptomyces avermitilis M...    45   0.008 
ref|YP_523259.1|  tRNA/rRNA methyltransferase (SpoU) [Rhodof...    45   0.008 
ref|YP_333959.1|  RNA methyltransferase, TrmH family [Burkho...    45   0.008 
ref|NP_539387.1|  ribosomal RNA methyltransferase [Brucella ...    45   0.008 
ref|YP_253739.1|  hypothetical protein SH1824 [Staphylococcu...    45   0.008 
ref|YP_047470.1|  putative tRNA/rRNA methyltransferase [Acin...    45   0.008 
ref|NP_698539.1|  RNA methyltransferase, TrmH family [Brucel...    45   0.008 
ref|ZP_00986296.1|  COG0566: rRNA methylases [Burkholderia d...    45   0.008 
ref|ZP_01321897.1|  hypothetical protein BpseP_03004332 [Bur...    45   0.008 
ref|YP_108739.1|  putative RNA methylase protein [Burkholder...    45   0.008 
gb|EAE61336.1|  unknown [environmental sequence]                   44   0.010 
gb|EAB14391.1|  unknown [environmental sequence]                   44   0.010 
ref|YP_001018071.1|  tRNA/rRNA methyltransferase (SpoU) [Pro...    44   0.010 
ref|YP_001009391.1|  putative tRNA/rRNA methyltransferase (S...    44   0.010 
ref|XP_001235387.1|  PREDICTED: hypothetical protein [Gallus...    44   0.010 
ref|NP_001050924.1|  Os03g0685100 [Oryza sativa (japonica cu...    44   0.010 
ref|ZP_01216020.1|  putative tRNA methyltransferase [Psychro...    44   0.010 
gb|AAR88654.1|  rRNA methylase-like protein [Viscum album]         44   0.010 
ref|YP_478174.1|  RNA methyltransferase, TrmH family [Synech...    44   0.010 
gb|AAK14417.1|AC087851_9  putative RNA methyltransferases [O...    44   0.010 
gb|AAD02043.1|  tRNA/rRNA methyltransferase [Brucella melite...    44   0.010 
ref|YP_296075.1|  tRNA/rRNA methyltransferase (SpoU) [Ralsto...    44   0.010 
ref|ZP_01131095.1|  rRNA methyltransferase [marine actinobac...    44   0.010 
ref|ZP_01094195.1|  putative rRNA methylase [Blastopirellula...    44   0.010 
ref|ZP_00827985.1|  COG0566: rRNA methylases [Yersinia frede...    44   0.010 
ref|XP_390351.1|  hypothetical protein FG10175.1 [Gibberella...    44   0.010 
gb|EAK77655.1|  unknown [environmental sequence]                   44   0.013 
gb|EAI35995.1|  unknown [environmental sequence]                   44   0.013 
gb|EAH37050.1|  unknown [environmental sequence]                   44   0.013 
gb|EAG52545.1|  unknown [environmental sequence]                   44   0.013 
gb|EAC24445.1|  unknown [environmental sequence]                   44   0.013 
ref|YP_849371.1|  rRNA methyltransferase, TrmH family [Liste...    44   0.013 
ref|YP_966452.1|  tRNA/rRNA methyltransferase (SpoU) [Desulf...    44   0.013 
ref|ZP_01237189.1|  putative tRNA methyltransferase [Vibrio ...    44   0.013 
dbj|BAC79237.1|  tRNA (guanosine-2'-O-)-methyltransferase [S...    44   0.013 
gb|AAP06366.1|  similar to GenBank Accession Number AP001507...    44   0.013 
ref|NP_651031.1|  CG18596-PA [Drosophila melanogaster] >gi|1...    44   0.013 
ref|YP_059643.1|  23S rRNA methyltransferase [Streptococcus ...    44   0.013 
ref|NP_983827.1|  ADL269Wp [Ashbya gossypii ATCC 10895] >gi|...    44   0.013 
ref|NP_462643.1|  putative tRNA/rRNA methyltransferase [Salm...    44   0.013 
ref|YP_128429.1|  putative tRNA methyltransferase [Photobact...    44   0.013 
ref|YP_008791.1|  putative rRNA methylase [Candidatus Protoc...    44   0.013 
ref|NP_625830.1|  rRNA methylase [Streptomyces coelicolor A3...    44   0.013 
ref|ZP_01132058.1|  RNA methyltransferase, TrmH family prote...    44   0.013 
ref|ZP_01005882.1|  putative tRNA (guanosine-2'-O-)-methyltr...    44   0.013 
ref|ZP_00837208.1|  tRNA (guanosine-2'-O-)-methyltransferase...    44   0.013 
ref|ZP_01480925.1|  hypothetical protein VchoR_02003227 [Vib...    44   0.013 
ref|ZP_00591871.1|  tRNA (guanosine-2'-O-)-methyltransferase...    44   0.013 
ref|ZP_00511794.1|  tRNA (guanosine-2'-O-)-methyltransferase...    44   0.013 
gb|EAJ92781.1|  unknown [environmental sequence]                   44   0.017 
gb|EAH12187.1|  unknown [environmental sequence]                   44   0.017 
gb|EAG64367.1|  unknown [environmental sequence]                   44   0.017 
ref|ZP_01547060.1|  rRNA methylase [Stappia aggregata IAM 12...    44   0.017 
ref|ZP_01449334.1|  tRNA (Guanosine-2'-O-)-methyltransferase...    44   0.017 
ref|ZP_01418789.1|  tRNA/rRNA methyltransferase, SpoU:RNA 2-...    44   0.017 
ref|ZP_01228464.1|  RNA methyltransferase [Aurantimonas sp. ...    44   0.017 
ref|YP_474546.1|  RNA methyltransferase, TrmH family [Synech...    44   0.017 
ref|YP_279757.1|  23S rRNA methyltransferase [Streptococcus ...    44   0.017 
ref|YP_284974.1|  tRNA/rRNA methyltransferase (SpoU) [Dechlo...    44   0.017 
ref|YP_390069.1|  RNA methyltransferase TrmH, group 3 [Desul...    44   0.017 
ref|NP_420003.1|  spoU rRNA methylase family protein [Caulob...    44   0.017 
ref|NP_606651.1|  putative rRNA methylase [Streptococcus pyo...    44   0.017 
ref|NP_268681.1|  putative rRNA methylase [Streptococcus pyo...    44   0.017 
ref|NP_664062.1|  putative spoU rRNA Methylase family protei...    44   0.017 
ref|ZP_01135751.1|  putative tRNA methyltransferase (tRNA mG...    44   0.017 
ref|ZP_01005380.1|  Predicted rRNA methylase [Prochlorococcu...    44   0.017 
ref|ZP_00592751.1|  tRNA/rRNA methyltransferase (SpoU) [Pros...    44   0.017 
ref|ZP_00427099.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    44   0.017 
gb|EAK76645.1|  unknown [environmental sequence]                   43   0.023 
gb|EAG93282.1|  unknown [environmental sequence]                   43   0.023 
gb|EAG13981.1|  unknown [environmental sequence]                   43   0.023 
gb|EAB66771.1|  unknown [environmental sequence]                   43   0.023 
gb|EAE63547.1|  unknown [environmental sequence]                   43   0.023 
gb|EAD96935.1|  unknown [environmental sequence]                   43   0.023 
ref|YP_854563.1|  tRNA guanosine-2'-O-methyltransferase [Aer...    43   0.023 
ref|YP_761548.1|  RNA methyltransferase, TrmH family [Hyphom...    43   0.023 
ref|YP_152708.1|  tRNA (guanosine-2'-O)-methyltransferase [S...    43   0.023 
ref|YP_210940.1|  putative SpoU-like rRNA methylase [Bactero...    43   0.023 
ref|YP_098575.1|  putative rRNA methylase [Bacteroides fragi...    43   0.023 
ref|XP_505972.1|  hypothetical protein [Yarrowia lipolytica]...    43   0.023 
ref|NP_894101.1|  tRNA/rRNA methyltransferase (SpoU) [Prochl...    43   0.023 
ref|ZP_01114589.1|  putative tRNA methyltransferase [Reineke...    43   0.023 
ref|ZP_01105097.1|  putative SpoU rRNA methylase family prot...    43   0.023 
ref|ZP_00719112.1|  COG0566: rRNA methylases [Escherichia co...    43   0.023 
gb|EAJ16121.1|  unknown [environmental sequence]                   43   0.029 
gb|EAG05132.1|  unknown [environmental sequence]                   43   0.029 
gb|EAC18512.1|  unknown [environmental sequence]                   43   0.029 
gb|EAF88252.1|  unknown [environmental sequence]                   43   0.029 
gb|EAB97355.1|  unknown [environmental sequence]                   43   0.029 
gb|EAF33279.1|  unknown [environmental sequence]                   43   0.029 
gb|EAB75740.1|  unknown [environmental sequence]                   43   0.029 
gb|EAE41587.1|  unknown [environmental sequence]                   43   0.029 
ref|ZP_01663603.1|  putative tRNA/rRNA methyltransferase pro...    43   0.029 
ref|ZP_01659760.1|  23S rRNA methyltransferase [Parvibaculum...    43   0.029 
ref|XP_315892.3|  ENSANGP00000017403 [Anopheles gambiae str....    43   0.029 
emb|CAL54890.1|  SpoU rRNA Methylase family protein (ISS) [O...    43   0.029 
ref|YP_986804.1|  tRNA/rRNA methyltransferase (SpoU) [Acidov...    43   0.029 
ref|ZP_01246190.1|  tRNA/rRNA methyltransferase (SpoU) [Flav...    43   0.029 
gb|AAU15130.1|  tRNA/rRNA methyltransferase-like protein [Cr...    43   0.029 
ref|NP_197043.1|  RNA binding / RNA methyltransferase [Arabi...    43   0.029 
ref|YP_578437.1|  tRNA/rRNA methyltransferase (SpoU) [Nitrob...    43   0.029 
ref|NP_897308.1|  putative tRNA/rRNA methyltransferase (SpoU...    43   0.029 
ref|ZP_00986789.1|  COG0566: rRNA methylases [Burkholderia d...    43   0.029 
ref|XP_666055.1|  OBP33pep like protein [Cryptosporidium hom...    43   0.029 
gb|EAI90286.1|  unknown [environmental sequence]                   42   0.039 
gb|EAI64900.1|  unknown [environmental sequence]                   42   0.039 
gb|EAI13518.1|  unknown [environmental sequence]                   42   0.039 
gb|EAH20675.1|  unknown [environmental sequence]                   42   0.039 
gb|EAF77846.1|  unknown [environmental sequence]                   42   0.039 
gb|EAF41527.1|  unknown [environmental sequence]                   42   0.039 
gb|EAB40981.1|  unknown [environmental sequence]                   42   0.039 
gb|EAB29522.1|  unknown [environmental sequence]                   42   0.039 
gb|EAE32742.1|  unknown [environmental sequence]                   42   0.039 
gb|EAD99912.1|  unknown [environmental sequence]                   42   0.039 
ref|ZP_01562178.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    42   0.039 
ref|YP_706706.1|  tRNA/rRNA methyltransferase [Rhodococcus s...    42   0.039 
ref|ZP_01254985.1|  putative rRNA methylase [Psychroflexus t...    42   0.039 
ref|ZP_01220685.1|  putative tRNA methyltransferase [Photoba...    42   0.039 
ref|YP_314373.1|  tRNA/rRNA methyltransferase [Thiobacillus ...    42   0.039 
ref|XP_455122.1|  unnamed protein product [Kluyveromyces lac...    42   0.039 
ref|YP_445907.1|  SpoU rRNA methylase family protein [Salini...    42   0.039 
ref|YP_011451.1|  RNA methyltransferase, TrmH family [Desulf...    42   0.039 
ref|YP_369552.1|  tRNA/rRNA methyltransferase (SpoU) [Burkho...    42   0.039 
ref|NP_738129.1|  putative tRNA/rRNA methyltransferase [Cory...    42   0.039 
ref|NP_600054.1|  rRNA methylase [Corynebacterium glutamicum...    42   0.039 
ref|NP_326135.1|  TRNA/RRNA METHYLTRANSFERASE [Mycoplasma pu...    42   0.039 
ref|ZP_01194809.1|  tRNA/rRNA methyltransferase (SpoU) [Myco...    42   0.039 
ref|ZP_00979917.1|  COG0566: rRNA methylases [Burkholderia c...    42   0.039 
ref|ZP_00726314.1|  COG0566: rRNA methylases [Escherichia co...    42   0.039 
ref|ZP_00699677.1|  COG0566: rRNA methylases [Shigella boydi...    42   0.039 
ref|YP_625911.1|  tRNA/rRNA methyltransferase (SpoU) [Burkho...    42   0.039 
ref|NP_290231.1|  putative RNA methylase [Escherichia coli O...    42   0.039 
ref|NP_756338.1|  tRNA (Guanosine-2'-O-)-methyltransferase [...    42   0.039 
gb|EAK34111.1|  unknown [environmental sequence]                   42   0.050 
gb|EAK24201.1|  unknown [environmental sequence]                   42   0.050 
gb|EAJ18449.1|  unknown [environmental sequence]                   42   0.050 
gb|EAJ03973.1|  unknown [environmental sequence]                   42   0.050 
gb|EAI80282.1|  unknown [environmental sequence]                   42   0.050 
gb|EAG67078.1|  unknown [environmental sequence]                   42   0.050 
gb|EAF32064.1|  unknown [environmental sequence]                   42   0.050 
gb|EAE20156.1|  unknown [environmental sequence]                   42   0.050 
ref|ZP_01557408.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    42   0.050 
ref|ZP_01526609.1|  RNA methyltransferase, TrmH family, grou...    42   0.050 
ref|NP_894582.1|  putative tRNA/rRNA methyltransferase (SpoU...    42   0.050 
ref|YP_605697.1|  tRNA (guanosine-2'-O-)-methyltransferase [...    42   0.050 
ref|ZP_00381389.1|  COG0566: rRNA methylases [Brevibacterium...    42   0.050 
ref|XP_710610.1|  putative mitochondrial ribosomal RNA methy...    42   0.050 
ref|XP_710624.1|  mitochondrial ribosomal RNA methylase [Can...    42   0.050 
ref|YP_644080.1|  tRNA/rRNA methyltransferase (SpoU) [Rubrob...    42   0.050 
gb|EAB31734.1|  unknown [environmental sequence] >gi|4411651...    42   0.066 
gb|EAD43920.1|  unknown [environmental sequence]                   42   0.066 
gb|EAC47635.1|  unknown [environmental sequence]                   42   0.066 
gb|EAF83603.1|  unknown [environmental sequence]                   42   0.066 
gb|EAC10050.1|  unknown [environmental sequence]                   42   0.066 
gb|EAC09931.1|  unknown [environmental sequence]                   42   0.066 
gb|EAE82446.1|  unknown [environmental sequence]                   42   0.066 
gb|EAE17776.1|  unknown [environmental sequence]                   42   0.066 
ref|ZP_01572085.1|  tRNA/rRNA methyltransferase (SpoU) [Burk...    42   0.066 
ref|ZP_01552050.1|  tRNA/rRNA methyltransferase [Methylophil...    42   0.066 
ref|YP_882308.1|  TsnR protein [Mycobacterium avium 104] >gi...    42   0.066 
ref|ZP_01529331.1|  tRNA/rRNA methyltransferase (SpoU) [Rose...    42   0.066 
ref|ZP_01517842.1|  RNA methyltransferase, TrmH family, grou...    42   0.066 
ref|ZP_01472148.1|  putative tRNA/rRNA methyltransferase (Sp...    42   0.066 
ref|YP_120042.1|  putative ribosomal RNA methyltransferase [...    42   0.066 
ref|ZP_01164755.1|  putative rRNA methylase [Lactobacillus r...    42   0.066 
ref|ZP_01162418.1|  putative tRNA methyltransferase [Photoba...    42   0.066 
ref|ZP_00951593.1|  putative rRNA methylase [Croceibacter at...    42   0.066 
gb|EAK58795.1|  unknown [environmental sequence]                   41   0.086 
gb|EAI18582.1|  unknown [environmental sequence]                   41   0.086 
gb|EAI07025.1|  unknown [environmental sequence]                   41   0.086 
gb|EAI05778.1|  unknown [environmental sequence]                   41   0.086 
gb|EAD39376.1|  unknown [environmental sequence]                   41   0.086 
gb|EAC97999.1|  unknown [environmental sequence]                   41   0.086 
gb|EAC82483.1|  unknown [environmental sequence]                   41   0.086 
gb|EAB69452.1|  unknown [environmental sequence]                   41   0.086 
gb|EAB13877.1|  unknown [environmental sequence]                   41   0.086 
ref|ZP_01691829.1|  tRNA/rRNA methyltransferase [Microscilla...    41   0.086 
ref|YP_954128.1|  tRNA/rRNA methyltransferase (SpoU) [Mycoba...    41   0.086 
ref|ZP_01543197.1|  tRNA/rRNA methyltransferase (SpoU) [Shew...    41   0.086 
ref|ZP_01524688.1|  RNA methyltransferase, TrmH family, grou...    41   0.086 
ref|XP_782457.2|  PREDICTED: similar to TAR RNA loop binding...    41   0.086 
ref|ZP_01449295.1|  23S rRNA methyltransferase [alpha proteo...    41   0.086 
ref|YP_715380.1|  putative 23S RRNA methylase [Frankia alni ...    41   0.086 
ref|YP_709491.1|  spoU protein [Borrelia afzelii PKo] >gi|11...    41   0.086 
ref|YP_944778.1|  tRNA guanosine-2'-O-methyltransferase [Psy...    41   0.086 
ref|ZP_01275361.1|  tRNA/rRNA methyltransferase (SpoU) [Myco...    41   0.086 
ref|YP_405491.1|  putative RNA methylase [Shigella dysenteri...    41   0.086 
ref|NP_355201.1|  hypothetical protein AGR_C_4082 [Agrobacte...    41   0.086 
emb|CAG00639.1|  unnamed protein product [Tetraodon nigrovir...    41   0.086 
ref|NP_386829.1|  PUTATIVE TRNA/RRNA METHYLTRANSFERASE PROTE...    41   0.086 
ref|YP_872918.1|  tRNA/rRNA methyltransferase (SpoU) [Acidot...    41   0.086 
ref|ZP_00922878.1|  COG0566: rRNA methylases [Shigella dysen...    41   0.086 
ref|ZP_00832213.1|  COG0566: rRNA methylases [Yersinia inter...    41   0.086 
ref|YP_747839.1|  tRNA/rRNA methyltransferase (SpoU) [Nitros...    41   0.086 

>ref|NP_311474.1| hypothetical protein ECs3447 [Escherichia coli O157:H7 str. Sakai]
 ref|NP_417076.1| predicted methyltransferase [Escherichia coli K12]
 ref|YP_311563.1| hypothetical protein SSON_2707 [Shigella sonnei Ss046]
 ref|YP_404358.1| hypothetical protein SDY_2824 [Shigella dysenteriae Sd197]
 ref|AP_003167.1| predicted methyltransferase [Escherichia coli W3110]
 sp|P0AGJ6|YFIF_ECO57 Hypothetical tRNA/rRNA methyltransferase yfiF
 sp|P0AGJ5|YFIF_ECOLI Hypothetical tRNA/rRNA methyltransferase yfiF
 gb|AAC75634.1| predicted methyltransferase [Escherichia coli K12]
 dbj|BAB36870.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gb|AAZ89328.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gb|ABB62867.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 dbj|BAA16467.2| predicted methyltransferase [Escherichia coli W3110]
 gb|EAY47318.1| tRNA/rRNA methyltransferase (SpoU) [Escherichia coli B]
          Length = 345

 Score =  705 bits (1819), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|ZP_00698246.1| COG0566: rRNA methylases [Shigella boydii BS512]
 ref|ZP_00706670.1| COG0566: rRNA methylases [Escherichia coli HS]
 ref|ZP_00709739.1| COG0566: rRNA methylases [Escherichia coli B171]
 ref|ZP_00721689.1| COG0566: rRNA methylases [Escherichia coli E110019]
 ref|ZP_00729480.1| COG0566: rRNA methylases [Escherichia coli E22]
 ref|ZP_00735633.1| COG0566: rRNA methylases [Escherichia coli 53638]
 ref|ZP_00925398.1| COG0566: rRNA methylases [Escherichia coli 101-1]
          Length = 370

 Score =  705 bits (1819), Expect = 0.0
 Identities = 345/345 (100%), Positives = 345/345 (100%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|ZP_00922261.1| COG0566: rRNA methylases [Shigella dysenteriae 1012]
          Length = 370

 Score =  704 bits (1818), Expect = 0.0
 Identities = 344/345 (99%), Positives = 345/345 (100%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEH+QPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEHIQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|ZP_00700601.1| COG0566: rRNA methylases [Escherichia coli E24377A]
 ref|ZP_00715445.1| COG0566: rRNA methylases [Escherichia coli B7A]
          Length = 370

 Score =  704 bits (1816), Expect = 0.0
 Identities = 344/345 (99%), Positives = 345/345 (100%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKS+IDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSYIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|NP_838153.1| hypothetical protein S2816 [Shigella flexneri 2a str. 2457T]
 gb|AAP17963.1| hypothetical protein S_2816 [Shigella flexneri 2a str. 2457T]
          Length = 345

 Score =  702 bits (1813), Expect = 0.0
 Identities = 344/345 (99%), Positives = 344/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWV QAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|YP_690045.1| hypothetical protein SFV_2644 [Shigella flexneri 5 str. 8401]
 gb|ABF04740.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 345

 Score =  701 bits (1810), Expect = 0.0
 Identities = 343/345 (99%), Positives = 344/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWV QAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLR+KIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRMKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|YP_670473.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
 gb|ABG70572.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           536]
          Length = 345

 Score =  701 bits (1810), Expect = 0.0
 Identities = 344/345 (99%), Positives = 344/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQ R
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQHR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|ZP_00721435.1| COG0566: rRNA methylases [Escherichia coli F11]
          Length = 370

 Score =  701 bits (1810), Expect = 0.0
 Identities = 344/345 (99%), Positives = 344/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQ R
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQHR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|NP_289139.1| hypothetical protein Z3865 [Escherichia coli O157:H7 EDL933]
 pir||E85904 hypothetical protein yfiF [imported] - Escherichia coli  (strain
           O157:H7, substrain EDL933)
 gb|AAG57697.1|AE005488_8 orf, hypothetical protein [Escherichia coli O157:H7 EDL933]
          Length = 345

 Score =  700 bits (1806), Expect = 0.0
 Identities = 343/345 (99%), Positives = 343/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKA HVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAXHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENE NPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVSQAGAQDCVLALENEXNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|YP_541894.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
 gb|ABE08363.1| hypothetical tRNA/rRNA methyltransferase YfiF [Escherichia coli
           UTI89]
          Length = 370

 Score =  699 bits (1804), Expect = 0.0
 Identities = 343/345 (99%), Positives = 344/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQ R
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQHR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAE+VQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|YP_408983.1| hypothetical protein SBO_2613 [Shigella boydii Sb227]
 gb|ABB67155.1| conserved hypothetical protein [Shigella boydii Sb227]
          Length = 345

 Score =  697 bits (1800), Expect = 0.0
 Identities = 343/345 (99%), Positives = 343/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAE VQ ITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAELVQSITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|NP_754987.1| Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
 gb|AAN81555.1|AE016764_237 Hypothetical tRNA/rRNA methyltransferase yfiF [Escherichia coli
           CFT073]
          Length = 370

 Score =  697 bits (1799), Expect = 0.0
 Identities = 342/345 (99%), Positives = 342/345 (99%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSR DGGRRPARDDKQSQ R
Sbjct: 26  MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRTDGGRRPARDDKQSQHR 85

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 86  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 145

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFK ALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 146 QSRPEAIVRAWFIQSVTPRFKGALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 205

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 206 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 265

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY
Sbjct: 266 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 325

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 326 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 370



>ref|NP_708432.2| hypothetical protein SF2643 [Shigella flexneri 2a str. 301]
 gb|AAN44139.2| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
          Length = 345

 Score =  689 bits (1778), Expect = 0.0
 Identities = 338/345 (97%), Positives = 339/345 (98%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRP KSRADGGRRPARDDKQSQPR
Sbjct: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRADGGRRPARDDKQSQPR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK
Sbjct: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTVQQWV QAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVQQWVIQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITG NIVNVL DFRQAGY+VV TSSEQG PLFKTSLPAKMVLVLGQEY
Sbjct: 241 RTAEGGAEHVQPITGHNIVNVLHDFRQAGYSVVNTSSEQGTPLFKTSLPAKMVLVLGQEY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA
Sbjct: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345



>ref|NP_457123.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 ref|NP_461583.1| putative tRNA/rRNA methyltransferase [Salmonella typhimurium LT2]
 ref|NP_804139.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi Ty2]
 ref|YP_217640.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 pir||AI0830 probable RNA methyltransferase STY2841 [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gb|AAL21542.1| putative tRNA/rRNA methyltransferase [Salmonella typhimurium LT2]
 emb|CAD05832.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi]
 gb|AAO67988.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Typhi Ty2]
 gb|AAX66559.1| putative tRNA/rRNA methyltransferase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
          Length = 345

 Score =  622 bits (1604), Expect = e-177
 Identities = 302/345 (87%), Positives = 324/345 (93%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDE+K KSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRP KSR DGGRRPARD++ +Q R
Sbjct: 1   MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRTDGGRRPARDERNNQSR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRK E SPWRTVSRAPGDETPEK DHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRP+AIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAEL KASGTEHHGGVCFLIKK
Sbjct: 121 QSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELAKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTV+QWV QA  QDCVLALE+ +NPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITG++IV+VLDDFRQAGYTVVTTSS++G+ LF T+LP KMVLVLG+EY
Sbjct: 241 RTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           + LP+AAR+P+DL VKI+GTGNV  LN+SVATGVLL EWWRQNKA
Sbjct: 301 DYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345



>ref|YP_149604.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gb|AAV76292.1| putative RNA methyltransferase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
          Length = 345

 Score =  617 bits (1590), Expect = e-175
 Identities = 300/345 (86%), Positives = 322/345 (93%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDE+K KSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRP KSR DGGRRPARD++ +Q R
Sbjct: 1   MNDELKNKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPAKSRTDGGRRPARDERNNQSR 60

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
           DRK E SPWRTVSRAPGDETPEK DHGGISGKSFI PEVLRRQRAEETRVYGENACQALF
Sbjct: 61  DRKHETSPWRTVSRAPGDETPEKVDHGGISGKSFIGPEVLRRQRAEETRVYGENACQALF 120

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           QSRP+AIVRAWFIQSVTPRFKEALRWMAANRKAYHVVD AEL KASGTEHHGGVCFLIKK
Sbjct: 121 QSRPDAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDGAELAKASGTEHHGGVCFLIKK 180

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNGTTV+QWV QA  QDCVLALE+ +NPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI
Sbjct: 181 RNGTTVKQWVKQAADQDCVLALEDVANPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEY 300
           RTAEGGAEHVQPITG++IV+VLDDFRQAGYTVVTTSS++G+ LF T+LP KMVLVLG+EY
Sbjct: 241 RTAEGGAEHVQPITGESIVDVLDDFRQAGYTVVTTSSDRGQALFSTTLPEKMVLVLGREY 300

Query: 301 EGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           + LP+AAR+P+DL VKI+GTGNV  LN+SVATGVLL EWWRQNKA
Sbjct: 301 DYLPEAAREPDDLCVKINGTGNVESLNVSVATGVLLAEWWRQNKA 345



>ref|ZP_01591131.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
 gb|EAV82703.1| tRNA/rRNA methyltransferase (SpoU) [Enterobacter sp. 638]
          Length = 365

 Score =  568 bits (1463), Expect = e-160
 Identities = 281/365 (76%), Positives = 308/365 (84%), Gaps = 20/365 (5%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MNDE+K KSGKVKVMYVRSDDDSDKRT NPRTGKG GRP  SRADGGRRPARDDK S+  
Sbjct: 1   MNDELKNKSGKVKVMYVRSDDDSDKRTVNPRTGKGAGRPASSRADGGRRPARDDKNSRGD 60

Query: 61  DRKWED--------------------SPWRTVSRAPGDETPEKADHGGISGKSFIDPEVL 100
           DRK +D                    SPWRTVSRAP D+ P KADHGGISGKSFIDPEVL
Sbjct: 61  DRKRDDRKRDDRKRDDRPRDDFQRDSSPWRTVSRAPTDDAPAKADHGGISGKSFIDPEVL 120

Query: 101 RRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEA 160
           RRQRAEETRVYGENACQALFQSRPE IVRAWFIQSVTPRFKEALRWMAANRKAYHVVD+ 
Sbjct: 121 RRQRAEETRVYGENACQALFQSRPECIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDDE 180

Query: 161 ELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAH 220
           ELTKASGTEHHGGVCFLIKKRNGTTV+QWVSQA A DCVLALE+  NPHNLG MMRSCAH
Sbjct: 181 ELTKASGTEHHGGVCFLIKKRNGTTVKQWVSQADADDCVLALEDVGNPHNLGAMMRSCAH 240

Query: 221 FGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQG 280
           FGVKGV++QDAA++ESGAAIRTAEGGAEHVQPITG+++++ +++FR+AGY++VTTSS  G
Sbjct: 241 FGVKGVLLQDAAIVESGAAIRTAEGGAEHVQPITGESVLDAIEEFRKAGYSIVTTSSHTG 300

Query: 281 KPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWW 340
            PLF+ +LP KMVLVLGQE +GL DAA    DL V I+GTG V  LN+SVATGVLL EWW
Sbjct: 301 TPLFQATLPRKMVLVLGQERDGLSDAALSTADLSVSIEGTGKVESLNVSVATGVLLAEWW 360

Query: 341 RQNKA 345
           RQNKA
Sbjct: 361 RQNKA 365



>ref|ZP_01538143.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
 gb|EAV29732.1| tRNA/rRNA methyltransferase (SpoU) [Serratia proteamaculans 568]
          Length = 366

 Score =  456 bits (1172), Expect = e-126
 Identities = 239/368 (64%), Positives = 275/368 (74%), Gaps = 25/368 (6%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDD--SDKRTHNPR-TGKG--------GGRPG--KSRADGG 47
           MND   GK+GKVKVMYVRSDDD  SD R  N R  GKG         GR G  K R +  
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDDDNNSDDRNKNKRPAGKGRPADGARSSGRTGQDKPRGNND 60

Query: 48  RRPARDDKQ----SQPR------DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDP 97
           RR +  D +     +PR      DR   DSPW+TVSR P +E     DHGGISGKSFIDP
Sbjct: 61  RRGSGSDSRRSESDRPRRPAHNEDRGGYDSPWKTVSRGPEEEPA--FDHGGISGKSFIDP 118

Query: 98  EVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVV 157
           E LRRQRAEETRVYGENACQALF SRP+AIVRAWF+QSVTPRF+EALRWMAANRKAYHVV
Sbjct: 119 EQLRRQRAEETRVYGENACQALFASRPDAIVRAWFVQSVTPRFREALRWMAANRKAYHVV 178

Query: 158 DEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRS 217
           DE EL KASGTEHHGGVCFLIKKR G   Q ++ +A A+DCVLALE   NPHNLG ++RS
Sbjct: 179 DEEELAKASGTEHHGGVCFLIKKRQGLDAQTYLKEAPAKDCVLALEEVGNPHNLGAIVRS 238

Query: 218 CAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSS 277
           CAHFGV GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+AGY +VTTSS
Sbjct: 239 CAHFGVNGVLLQDPAVLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYAIVTTSS 298

Query: 278 EQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLG 337
            +G PL +  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+SVATG+LL 
Sbjct: 299 HKGTPLAQAKLPAKMVLVLGQERDGLSDSAWQQGDMNVSIGGTGKVESLNVSVATGILLA 358

Query: 338 EWWRQNKA 345
           +WWRQN+A
Sbjct: 359 DWWRQNQA 366



>emb|CAC44352.1| YfiF protein [Erwinia chrysanthemi]
          Length = 366

 Score =  452 bits (1162), Expect = e-125
 Identities = 235/365 (64%), Positives = 275/365 (75%), Gaps = 27/365 (7%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDK-----RTHNPRTGKGGGRPGKSRADGGRRPARDDK 55
           M+DE+ GKSGKV+VMYVR++D  +K     RT + R G G  R  K R DG  R  RD  
Sbjct: 5   MSDELSGKSGKVRVMYVRNEDGDEKSSKPKRTPDKRRGDGDNRGRKGR-DGAPRGGRDGA 63

Query: 56  Q------------SQPRDRKWE-----DSPWRTVSRAPGDETPEKADHGGISGKSFIDPE 98
           +             +PR  + E     DSPW+TVSRAPG+E     DHGGISGKS IDPE
Sbjct: 64  ERGGKWRSESAGRERPRPPRREPVEQADSPWKTVSRAPGEEP----DHGGISGKSQIDPE 119

Query: 99  VLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVD 158
            +RRQR+EETRVYGENACQALF SRPEAIVR WF+Q VTPRF+EALRWMAANRKAYHVV+
Sbjct: 120 QIRRQRSEETRVYGENACQALFLSRPEAIVRGWFLQEVTPRFREALRWMAANRKAYHVVE 179

Query: 159 EAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSC 218
           + EL +ASGTEHHGGVCFLIKKR+G  V  ++S+AG  DCVLALE+  NPHNLGG+MRSC
Sbjct: 180 DDELVRASGTEHHGGVCFLIKKRHGLDVAAYLSEAGDTDCVLALEDVGNPHNLGGIMRSC 239

Query: 219 AHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSE 278
           AHFGVKG++V DAA LESGAA+RTAEGGAEHV+ I+ D +V+ L  FR AGYT+VTTSS 
Sbjct: 240 AHFGVKGLLVNDAAQLESGAAVRTAEGGAEHVKAISADGLVDALAQFRAAGYTIVTTSSH 299

Query: 279 QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338
           +G  L K SLPAK V+VLGQE +GL D+A    D++V IDGTGNV  LNISVATG+LL E
Sbjct: 300 KGTTLSKVSLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIDGTGNVESLNISVATGILLAE 359

Query: 339 WWRQN 343
           WWRQN
Sbjct: 360 WWRQN 364



>ref|ZP_00827975.1| COG0566: rRNA methylases [Yersinia frederiksenii ATCC 33641]
          Length = 363

 Score =  448 bits (1153), Expect = e-124
 Identities = 234/370 (63%), Positives = 273/370 (73%), Gaps = 33/370 (8%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGK----GGGRPGKS-------------R 43
           MND   GK+GKVKVMYVRSD+ SD R  N R+ K      GRPG +             R
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNSNNRSNKQRPAAKGRPGDNAGRGSSSRNNDSRR 60

Query: 44  ADGGR-------RPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFID 96
            D GR       RPAR D           DSPW+TVSRAP +E PE  DHGGISGKS +D
Sbjct: 61  NDSGRNERDRPSRPARSDSNGP------YDSPWKTVSRAPSEE-PE-FDHGGISGKSHVD 112

Query: 97  PEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHV 156
           P  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTPRF+EAL+WMAANRKAYHV
Sbjct: 113 PAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHV 172

Query: 157 VDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQDCVLALENESNPHNLGGMM 215
           V+E EL KASGTEHHGGVCFLIKKR G   + ++ Q   A+DCVLALE+  NPHNLGG+M
Sbjct: 173 VEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIM 232

Query: 216 RSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTT 275
           R+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+AGYT+VTT
Sbjct: 233 RTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTT 292

Query: 276 SSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVL 335
           SS +G  L K  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+SVATG+L
Sbjct: 293 SSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGIL 352

Query: 336 LGEWWRQNKA 345
           L EWWRQN A
Sbjct: 353 LSEWWRQNSA 362



>ref|ZP_00823891.1| COG0566: rRNA methylases [Yersinia mollaretii ATCC 43969]
          Length = 358

 Score =  446 bits (1148), Expect = e-124
 Identities = 232/361 (64%), Positives = 271/361 (75%), Gaps = 20/361 (5%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPA-----RDDK 55
           MND   GK+GKVKVMYVRSD+ SD R  + R   G GRPG   A  G  P      R+D 
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNKDKRPA-GKGRPG-DHAGRGSSPRNNDSRRNDS 58

Query: 56  QSQPRDRKWE----------DSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRA 105
               RDR             DSPW+TVSRAP +E PE  DHGGISGKS +DP  LRRQRA
Sbjct: 59  GRNERDRPSRPARSESSGPYDSPWKTVSRAPSEE-PE-FDHGGISGKSHVDPAQLRRQRA 116

Query: 106 EETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKA 165
           EETRVYGENAC+ALF+SRP+AIVRAWF+QSVTPRF+EAL+WMAANRKAYHVV+E EL KA
Sbjct: 117 EETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEDELAKA 176

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQDCVLALENESNPHNLGGMMRSCAHFGVK 224
           SGTEHHGGVCFLIKKR G   + ++ Q   A+DCVLALE+  NPHNLGG+MR+CAHFG+ 
Sbjct: 177 SGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTCAHFGIN 236

Query: 225 GVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+AGYT+VTTSS +G  L 
Sbjct: 237 GVLLQDPAILESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLS 296

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           K  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+SVATG+LL EWWRQN 
Sbjct: 297 KAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWRQNS 356

Query: 345 A 345
           A
Sbjct: 357 A 357



>ref|ZP_00821026.1| COG0566: rRNA methylases [Yersinia bercovieri ATCC 43970]
          Length = 363

 Score =  446 bits (1146), Expect = e-123
 Identities = 230/364 (63%), Positives = 270/364 (74%), Gaps = 21/364 (5%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRT-----------GKGGGRPGKSRADGGRR 49
           MND   GK+GKVKVMYVRSD+ SD R  N R            G   GR    R    RR
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNSNNRNKNPRPAAKGRPGDNAGRGSSPRNSDSRR 60

Query: 50  --PARDDKQSQPRDRKWE-----DSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR 102
               R+D+    R  + E     DSPW+TVSRAP +E PE  DHGGISGKS +DP  LRR
Sbjct: 61  NDSGRNDRDRPSRPARSESSGPYDSPWKTVSRAPSEE-PE-FDHGGISGKSHVDPAQLRR 118

Query: 103 QRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAEL 162
           QRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTPRF+EAL+WMAANRKAYHVV+E EL
Sbjct: 119 QRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEDEL 178

Query: 163 TKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQDCVLALENESNPHNLGGMMRSCAHF 221
            KASGTEHHGGVCFLIKKR G   + ++ Q   A+DCVLALE+  NPHNLGG+MR+CAHF
Sbjct: 179 AKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTCAHF 238

Query: 222 GVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK 281
           G+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+AGYT+VTTSS +G 
Sbjct: 239 GINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKGV 298

Query: 282 PLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWR 341
            L K  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+SVATG+LL EWWR
Sbjct: 299 TLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWWR 358

Query: 342 QNKA 345
           QN A
Sbjct: 359 QNSA 362



>ref|ZP_00833768.1| COG0566: rRNA methylases [Yersinia intermedia ATCC 29909]
          Length = 364

 Score =  444 bits (1141), Expect = e-123
 Identities = 230/365 (63%), Positives = 275/365 (75%), Gaps = 22/365 (6%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDS-DKRTHNPRT-----------GKGGGRPGKSRADGGR 48
           MND   GK+GKVKVMYVRSD+ S D R +N R+           G   GR    R++  R
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSSDDRNNNNRSKNQRPASKGRPGDNAGRGSSPRSNDSR 60

Query: 49  R--PARDDKQSQPRDRKWE-----DSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLR 101
           R    R+++ S  R  + E     DSPW+TVSRAP +E PE  DHGGISGKS +DP  LR
Sbjct: 61  RNDSGRNERVSPSRPARSEGNGPYDSPWKTVSRAPSEE-PE-FDHGGISGKSHVDPAQLR 118

Query: 102 RQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAE 161
           RQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTPRF+EAL+WMAANRKAYHVV+E E
Sbjct: 119 RQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAYHVVEEEE 178

Query: 162 LTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQDCVLALENESNPHNLGGMMRSCAH 220
           L KASGTEHHGGVCFLIKKR G   + ++ Q   A+DCVLALE+  NPHNLGG+MR+CAH
Sbjct: 179 LAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDCVLALEDVGNPHNLGGIMRTCAH 238

Query: 221 FGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQG 280
           FG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+AGYT+VTTSS +G
Sbjct: 239 FGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKAGYTIVTTSSHKG 298

Query: 281 KPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWW 340
             L K  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+SVATG+LL EWW
Sbjct: 299 VSLSKAELPAKMVLVLGQESDGLTDSAWQQGDMSVSIGGTGRVESLNVSVATGILLAEWW 358

Query: 341 RQNKA 345
           RQN A
Sbjct: 359 RQNSA 363



>ref|YP_001007418.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 emb|CAL13274.1| putative trna/rRNA methyltransferase [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 368

 Score =  440 bits (1132), Expect = e-122
 Identities = 233/377 (61%), Positives = 274/377 (72%), Gaps = 41/377 (10%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDS------DKRTHNPRTGKGGGRPGKS------------ 42
           MND   GK+GKVKVMYVRSD++S      + R  NPR   G GRPG +            
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDENSSDDRNSNNRGKNPRPA-GKGRPGDNAGRGSSPRNNDS 59

Query: 43  -RADGGR-------RPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSF 94
            R D GR       RPAR D           DSPW+TVSRAP +E PE  DHGGISGKS 
Sbjct: 60  RRNDSGRNERVSPGRPARSDNNGP------YDSPWKTVSRAPSEE-PE-FDHGGISGKSH 111

Query: 95  IDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAY 154
           +DP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTPRF+EAL+WMAANRKAY
Sbjct: 112 VDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTPRFREALKWMAANRKAY 171

Query: 155 HVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAG------AQDCVLALENESNP 208
           HVV+E EL KASGTEHHGGVCFLIKKR G   + ++ Q         +DCVLALE+  NP
Sbjct: 172 HVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKDGIVKDCVLALEDVGNP 231

Query: 209 HNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQA 268
           HNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+ ++VLD FR+A
Sbjct: 232 HNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADDFLSVLDTFRKA 291

Query: 269 GYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNI 328
           GYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A    D+ V I GTG V  LN+
Sbjct: 292 GYTIVTTSSHKGVSLAKAELPAKMVLVLGQESDGLTDSAWQQGDVSVSIGGTGKVESLNV 351

Query: 329 SVATGVLLGEWWRQNKA 345
           SVATG+LL EWWRQN+A
Sbjct: 352 SVATGILLSEWWRQNQA 368



>ref|NP_668251.1| hypothetical protein y0920 [Yersinia pestis KIM]
 ref|NP_992052.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gb|AAM84502.1|AE013695_4 hypothetical protein y0920 [Yersinia pestis KIM]
 gb|AAS60929.1| putative tRNA/rRNA methyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
          Length = 393

 Score =  440 bits (1132), Expect = e-122
 Identities = 233/388 (60%), Positives = 274/388 (70%), Gaps = 45/388 (11%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGK----------------------GGGR 38
           MND   GK+GKVKVMYVRSD+ SD R  + R  +                      G GR
Sbjct: 6   MNDSFSGKNGKVKVMYVRSDESSDDRNSSNRDNRNNSSRDNSNRDNNSRGRSQRPAGNGR 65

Query: 39  PGKSRADG-------------GRRP--ARDDKQSQPRDRKWE-----DSPWRTVSRAPGD 78
           PG +   G              RRP   R+++    R  + E     DSPW+TVSRAP +
Sbjct: 66  PGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAPSE 125

Query: 79  ETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTP 138
           E PE  DHGGISGKS IDP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTP
Sbjct: 126 E-PE-FDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTP 183

Query: 139 RFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQD 197
           RF+EAL+WMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G   + ++ Q   A+D
Sbjct: 184 RFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKD 243

Query: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDN 257
           CVLALE   NPHNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+
Sbjct: 244 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADD 303

Query: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKI 317
            ++VLD FR+AGYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A    DL V I
Sbjct: 304 FLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSI 363

Query: 318 DGTGNVAGLNISVATGVLLGEWWRQNKA 345
            GTG V  LN+SVATG+LL EWWRQN A
Sbjct: 364 GGTGRVESLNVSVATGILLAEWWRQNSA 391



>ref|NP_406739.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
 ref|ZP_01176375.1| COG0566: rRNA methylases [Yersinia pestis biovar Orientalis str.
           IP275]
 ref|YP_652667.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 ref|YP_646759.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gb|ABG17159.1| tRNA/rRNA methyltransferase [Yersinia pestis Nepal516]
 gb|ABG14722.1| putative tRNA/rRNA methyltransferase [Yersinia pestis Antiqua]
 emb|CAL21862.1| putative tRNA/rRNA methyltransferase [Yersinia pestis CO92]
          Length = 388

 Score =  440 bits (1132), Expect = e-122
 Identities = 233/388 (60%), Positives = 274/388 (70%), Gaps = 45/388 (11%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGK----------------------GGGR 38
           MND   GK+GKVKVMYVRSD+ SD R  + R  +                      G GR
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNSSNRDNRNNSSRDNSNRDNNSRGRSQRPAGNGR 60

Query: 39  PGKSRADG-------------GRRP--ARDDKQSQPRDRKWE-----DSPWRTVSRAPGD 78
           PG +   G              RRP   R+++    R  + E     DSPW+TVSRAP +
Sbjct: 61  PGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAPSE 120

Query: 79  ETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTP 138
           E PE  DHGGISGKS IDP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTP
Sbjct: 121 E-PE-FDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTP 178

Query: 139 RFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQD 197
           RF+EAL+WMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G   + ++ Q   A+D
Sbjct: 179 RFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKD 238

Query: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDN 257
           CVLALE   NPHNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+
Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADD 298

Query: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKI 317
            ++VLD FR+AGYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A    DL V I
Sbjct: 299 FLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSI 358

Query: 318 DGTGNVAGLNISVATGVLLGEWWRQNKA 345
            GTG V  LN+SVATG+LL EWWRQN A
Sbjct: 359 GGTGRVESLNVSVATGILLAEWWRQNSA 386



>ref|YP_069395.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
 emb|CAH20094.1| putative tRNA/rRNA methyltransferase [Yersinia pseudotuberculosis
           IP 32953]
          Length = 390

 Score =  440 bits (1131), Expect = e-122
 Identities = 233/390 (59%), Positives = 274/390 (70%), Gaps = 47/390 (12%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGK------------------------GG 36
           MND   GK+GKVKVMYVRSD+ SD R  + R  +                        G 
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDNRNSSNRDNRNRDNSSRDNSNRDNNSRGRSQRPAGN 60

Query: 37  GRPGKSRADG-------------GRRP--ARDDKQSQPRDRKWE-----DSPWRTVSRAP 76
           GRPG +   G              RRP   R+++    R  + E     DSPW+TVSRAP
Sbjct: 61  GRPGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAP 120

Query: 77  GDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSV 136
            +E PE  DHGGISGKS IDP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSV
Sbjct: 121 SEE-PE-FDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSV 178

Query: 137 TPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGA 195
           TPRF+EAL+WMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G   + ++ Q   A
Sbjct: 179 TPRFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQA 238

Query: 196 QDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITG 255
           +DCVLALE   NPHNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  
Sbjct: 239 KDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINA 298

Query: 256 DNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRV 315
           D+ ++VLD FR+AGYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A    DL V
Sbjct: 299 DDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSV 358

Query: 316 KIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
            I GTG V  LN+SVATG+LL EWWRQN A
Sbjct: 359 SIGGTGRVESLNVSVATGILLAEWWRQNSA 388



>ref|ZP_00795424.1| COG0566: rRNA methylases [Yersinia pestis Angola]
          Length = 388

 Score =  439 bits (1129), Expect = e-121
 Identities = 234/388 (60%), Positives = 274/388 (70%), Gaps = 45/388 (11%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRT---HNPRTGK-------------------GGGR 38
           MND   GK+GKVKVMYVRSD+ SD R    H+ R                      G GR
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNSSNHDNRNNSSRDNSNRDNNGRGRSQRPAGNGR 60

Query: 39  PGKSRADG-------------GRRP--ARDDKQSQPRDRKWE-----DSPWRTVSRAPGD 78
           PG +   G              RRP   R+++    R  + E     DSPW+TVSRAP +
Sbjct: 61  PGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKTVSRAPSE 120

Query: 79  ETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTP 138
           E PE  DHGGISGKS IDP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAWF+QSVTP
Sbjct: 121 E-PE-FDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAWFVQSVTP 178

Query: 139 RFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-AGAQD 197
           RF+EAL+WMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G   + ++ Q   A+D
Sbjct: 179 RFREALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQQQTQAKD 238

Query: 198 CVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDN 257
           CVLALE   NPHNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH++ I  D+
Sbjct: 239 CVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHIKAINADD 298

Query: 258 IVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKI 317
            ++VLD FR+AGYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A    DL V I
Sbjct: 299 FLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQGDLSVSI 358

Query: 318 DGTGNVAGLNISVATGVLLGEWWRQNKA 345
            GTG V  LN+SVATG+LL EWWRQN A
Sbjct: 359 GGTGRVESLNVSVATGILLAEWWRQNSA 386



>ref|NP_928585.1| hypothetical protein plu1274 [Photorhabdus luminescens subsp.
           laumondii TTO1]
 emb|CAE13568.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 338

 Score =  437 bits (1123), Expect = e-121
 Identities = 219/346 (63%), Positives = 262/346 (75%), Gaps = 9/346 (2%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           MND   GK+GKVKVMYVRS+  +D R +N R        GK R  G RR   +     PR
Sbjct: 1   MNDSYSGKNGKVKVMYVRSEGGNDSRNNNKRPS------GKGRDQGQRRRDNERTSRSPR 54

Query: 61  DRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALF 120
             + E SPW+TVSR   D       HGGISGKS IDPE LRRQR EETR+YGENACQA+F
Sbjct: 55  ANERERSPWKTVSRPESDSVTPM--HGGISGKSQIDPEQLRRQRMEETRIYGENACQAMF 112

Query: 121 QSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKK 180
           ++R EAIVRAWF++SVTPRF+ AL+WMAANRKAYHVVDEAELTK SGTEHHGGVCFLIKK
Sbjct: 113 KNRSEAIVRAWFVESVTPRFRNALKWMAANRKAYHVVDEAELTKVSGTEHHGGVCFLIKK 172

Query: 181 RNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAI 240
           RNG   + ++  A  +DCVLALE+  NPHNLGG+MRSCAHFGV+GV++QD ALLESGAAI
Sbjct: 173 RNGLDAETYLKDAPVKDCVLALEDVGNPHNLGGIMRSCAHFGVQGVILQDVALLESGAAI 232

Query: 241 RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK-PLFKTSLPAKMVLVLGQE 299
           RTAEGGAEH++ I  D++V  L++FR+AGYT+VTTSS +G   L K  LP KMVLVLGQE
Sbjct: 233 RTAEGGAEHIKGIDADSLVTTLNNFRKAGYTIVTTSSHKGSTALAKAELPEKMVLVLGQE 292

Query: 300 YEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
            +GL D+A +  D+ + + G+G V  LN+SVATG++L EWWRQNKA
Sbjct: 293 RDGLSDSAWEHGDMSLFVGGSGLVESLNVSVATGIMLAEWWRQNKA 338



>ref|ZP_01497738.1| hypothetical protein YpseI_02002907 [Yersinia pseudotuberculosis IP
           31758]
          Length = 395

 Score =  436 bits (1122), Expect = e-121
 Identities = 232/395 (58%), Positives = 274/395 (69%), Gaps = 52/395 (13%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGK-------------------------- 34
           MND   GK+GKVKVMYVRSD+ SD R  + R  +                          
Sbjct: 1   MNDSFSGKNGKVKVMYVRSDESSDDRNSSNRDNRNRDNSNRDNSNRDNSNRDNNSRGRSQ 60

Query: 35  ---GGGRPGKSRADG-------------GRRP--ARDDKQSQPRDRKWE-----DSPWRT 71
              G GRPG +   G              RRP   R+++    R  + E     DSPW+T
Sbjct: 61  RPAGNGRPGDNARQGDNTRQGNAPRNNDSRRPDSGRNERDRPSRPARSEGSSPYDSPWKT 120

Query: 72  VSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAW 131
           VSRAP +E PE  DHGGISGKS IDP  LRRQRAEETRVYGENAC+ALF+SRP+AIVRAW
Sbjct: 121 VSRAPSEE-PE-FDHGGISGKSHIDPAQLRRQRAEETRVYGENACKALFESRPDAIVRAW 178

Query: 132 FIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVS 191
           F+QSVTPRF++AL+WMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G   + ++ 
Sbjct: 179 FVQSVTPRFRDALKWMAANRKAYHVVEEDELAKASGTEHHGGVCFLIKKRQGLDAETYLQ 238

Query: 192 Q-AGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHV 250
           Q   A+DCVLALE   NPHNLGG+MR+CAHFG+ GV++QD A+LESGAA+RTAEGGAEH+
Sbjct: 239 QQTQAKDCVLALEEVGNPHNLGGIMRTCAHFGINGVLLQDPAMLESGAAVRTAEGGAEHI 298

Query: 251 QPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDP 310
           + I  D+ ++VLD FR+AGYT+VTTSS +G  L K  LPAKMVLVLGQE +GL D+A   
Sbjct: 299 KAINADDFLSVLDTFRKAGYTIVTTSSHKGVSLSKAELPAKMVLVLGQESDGLTDSAWQQ 358

Query: 311 NDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
            DL V I GTG V  LN+SVATG+LL EWWRQN A
Sbjct: 359 GDLSVSIGGTGRVESLNVSVATGILLAEWWRQNSA 393



>ref|YP_051604.1| putative tRNA/rRNA methyltransferase [Erwinia carotovora subsp.
           atroseptica SCRI1043]
 emb|CAG76414.1| putative tRNA/rRNA methyltransferase [Erwinia carotovora subsp.
           atroseptica SCRI1043]
          Length = 383

 Score =  434 bits (1115), Expect = e-120
 Identities = 232/387 (59%), Positives = 272/387 (70%), Gaps = 46/387 (11%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRR----------- 49
           M+D    KSGKV+VMYVRSDD+ +K   N R      R G  R  GG R           
Sbjct: 1   MSDSFNSKSGKVRVMYVRSDDEGEKDNKNKRPADKDRR-GDRRDSGGSRDQREKPKHPRD 59

Query: 50  ---------PARD-------------------DKQSQPR--DRKWEDSPWRTVSRAPGD- 78
                    P+RD                   D   +PR  D    +SPW+TVSRAP + 
Sbjct: 60  VNPRYARENPSRDGDSSAKTPWGNKDRNERGSDTTRRPRGEDSGGYESPWKTVSRAPSES 119

Query: 79  ETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTP 138
           +TP   DHGGI+GKS IDPE LRRQR EETRVYGENACQALF++R E IVRAWF+Q VTP
Sbjct: 120 DTP---DHGGITGKSQIDPEQLRRQRQEETRVYGENACQALFKNRSEVIVRAWFLQEVTP 176

Query: 139 RFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDC 198
           RF++ALRWMAANRKAYHVV+E EL KASGTEHHGGVCFLIKKR G  V++++  AG  DC
Sbjct: 177 RFRDALRWMAANRKAYHVVEEEELIKASGTEHHGGVCFLIKKRQGMDVREYLKTAGEHDC 236

Query: 199 VLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNI 258
           VLALE+  NPHNLGG+MRSCAHFGVKGV+VQDAALLESGAA+RTAEGGAEHV+ I  D+ 
Sbjct: 237 VLALEDVGNPHNLGGIMRSCAHFGVKGVLVQDAALLESGAAVRTAEGGAEHVKAINADDF 296

Query: 259 VNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKID 318
           ++VL +FR AGYT+VTTSS +G  L K +LPAK V+VLGQE +GL D+A    D++V I 
Sbjct: 297 LSVLAEFRSAGYTIVTTSSHKGTVLSKATLPAKTVIVLGQEGDGLSDSAWQQGDVKVSIG 356

Query: 319 GTGNVAGLNISVATGVLLGEWWRQNKA 345
           GTG V  LNISVATG+LL EWWRQN+A
Sbjct: 357 GTGKVESLNISVATGILLSEWWRQNQA 383



>ref|YP_455588.1| hypothetical protein SG1908 [Sodalis glossinidius str. 'morsitans']
 dbj|BAE75183.1| conserved hypothetical protein [Sodalis glossinidius str.
           'morsitans']
          Length = 367

 Score =  389 bits (999), Expect = e-106
 Identities = 204/364 (56%), Positives = 248/364 (68%), Gaps = 24/364 (6%)

Query: 2   NDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADG--------------- 46
           ND +KGK+GKV+VMYVR +++ ++            R G  R++G               
Sbjct: 4   NDSLKGKNGKVRVMYVRKEEEQEQARRPSSRASADDRRGDQRSEGRSPWNTSGDRASGEV 63

Query: 47  GRR-----PARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLR 101
            RR     P RDD   +       DSPW+T     GD+     DHGGISGKS IDPE LR
Sbjct: 64  SRRARQDSPFRDDSTGRRPRGDAPDSPWKTFYA--GDDDATVPDHGGISGKSQIDPEQLR 121

Query: 102 RQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAE 161
           RQRAEETRVYGENACQALF++RP+AIVRAWF QSVTPRF++ALRWMAANRKAYHVV+  E
Sbjct: 122 RQRAEETRVYGENACQALFRNRPDAIVRAWFEQSVTPRFRDALRWMAANRKAYHVVEYDE 181

Query: 162 LTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGA--QDCVLALENESNPHNLGGMMRSCA 219
           L KASGTEHHGGVCFLIKKR G     +++ A A  QDCVLALE  SNPHNLG M+RSCA
Sbjct: 182 LAKASGTEHHGGVCFLIKKRAGLDADGYLASAAAQQQDCVLALEQVSNPHNLGAMLRSCA 241

Query: 220 HFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQ 279
           HFGV  V+V D+ALL+SGAA+RTAEGGAEHV+ I  D+++  L  F++AGYTVVT +   
Sbjct: 242 HFGVNSVMVSDSALLDSGAAVRTAEGGAEHVKAIKCDDVLQDLQRFQRAGYTVVTLAGNS 301

Query: 280 GKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           G  L    +PA+ VLVLG+E   L +A     D+ V I+G+G V  LN+SV+ G+LL EW
Sbjct: 302 GTSLSTVKMPARTVLVLGEEGSALSEAVLSQADIAVTINGSGRVPSLNVSVSAGILLAEW 361

Query: 340 WRQN 343
           WRQN
Sbjct: 362 WRQN 365



>gb|EAJ43787.1| unknown [environmental sequence]
          Length = 231

 Score =  367 bits (941), Expect = e-100
 Identities = 182/213 (85%), Positives = 194/213 (91%)

Query: 133 IQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ 192
           +QSVTPRFKEALRWMAANRKAYHVVDEAEL KASGTEHHGGVCFLIKKRNGTTV+QWV Q
Sbjct: 19  VQSVTPRFKEALRWMAANRKAYHVVDEAELAKASGTEHHGGVCFLIKKRNGTTVKQWVGQ 78

Query: 193 AGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQP 252
           AGAQDCVLALE+ +NPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQP
Sbjct: 79  AGAQDCVLALEDIANPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQP 138

Query: 253 ITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPND 312
           ITGD+IV+VLDDFR AGYTVV TSS +GKPLF T+LP KMVLVLG+E E LP+AA   +D
Sbjct: 139 ITGDSIVDVLDDFRNAGYTVVMTSSVKGKPLFTTTLPEKMVLVLGREREALPEAACSADD 198

Query: 313 LRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
           L V IDGTG V  LN+SVATGVLL EWWRQNKA
Sbjct: 199 LCVAIDGTGKVETLNVSVATGVLLAEWWRQNKA 231



>ref|YP_928398.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
 gb|ABM00729.1| putative tRNA/rRNA methyltransferase [Shewanella amazonensis SB2B]
          Length = 333

 Score =  244 bits (622), Expect = 7e-63
 Identities = 131/330 (39%), Positives = 195/330 (59%), Gaps = 36/330 (10%)

Query: 49  RPARDDK-QSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDP---------- 97
           RPAR D+ Q + +  + +     TV  A G E   +    G SGK   D           
Sbjct: 2   RPARADRYQGRNQQERTQGDKGSTVEHAQGREDRARKGADGCSGKGRFDRNTGSGRTERR 61

Query: 98  ------EVLRR-----------------QRAEETRVYGENACQALFQSRPEAIVRAWFIQ 134
                 E  RR                 QR  ETR+YG NAC+  F+ R + +++ +  +
Sbjct: 62  DAYHHREAPRREPAHRATGAQAGFDGKDQRLNETRLYGINACRETFKLRSDEVIKLYLDE 121

Query: 135 SVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQ-- 192
              P+F + ++++A NRKAYHVVD  EL K +G++HHGGV  +++++    +  +++   
Sbjct: 122 ETAPKFADVMKYLARNRKAYHVVDADELEKIAGSQHHGGVVMVVRRKPVQDIAGYLAANT 181

Query: 193 AGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQP 252
           A ++DC+LAL+   NPHNLG +MRSCAHFGV G+V+ +A LL+SGAA RTAEGG EHV+ 
Sbjct: 182 AKSRDCLLALDGVGNPHNLGAIMRSCAHFGVAGIVMTEAGLLQSGAAARTAEGGMEHVEG 241

Query: 253 ITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPND 312
           I  D + + L   R AGY+++TTSS  G+ L+++ LPA++V+V G+E +G+  A     D
Sbjct: 242 IRCDRLTDALQLCRDAGYSIITTSSHGGESLYRSKLPARVVVVFGEEMDGVSKAVASRAD 301

Query: 313 LRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           + V+I GTG V  LN+SVA  ++LGEW+RQ
Sbjct: 302 IGVQIPGTGLVESLNVSVAASLILGEWYRQ 331



>ref|YP_853715.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
 gb|ABJ02001.1| tRNA/rRNA methyltransferase YfiF [Escherichia coli APEC O1]
          Length = 123

 Score =  235 bits (599), Expect = 3e-60
 Identities = 117/123 (95%), Positives = 121/123 (98%)

Query: 223 VKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 282
           +K V +QDAAL+ESGAAIRTAEGGAE+VQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP
Sbjct: 1   MKSVALQDAALVESGAAIRTAEGGAEYVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 60

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ
Sbjct: 61  LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 120

Query: 343 NKA 345
           NKA
Sbjct: 121 NKA 123



>gb|EAG57629.1| unknown [environmental sequence]
          Length = 321

 Score =  234 bits (597), Expect = 5e-60
 Identities = 118/282 (41%), Positives = 176/282 (62%), Gaps = 12/282 (4%)

Query: 55  KQSQPRDRKWE-----DSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETR 109
           K S P+ +K +       PW     A    +  K      +    +  +VL++ R EE +
Sbjct: 45  KTSAPQHKKTQPGSELQKPWTKAKPASAKTSEAKT-----TTPKAVSAKVLKQNRQEEAK 99

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTE 169
           +YGENAC+  F  RPEA+VR +  + + P+F + ++++AAN+KAYHVV E EL K +G++
Sbjct: 100 IYGENACRVAFLQRPEALVRLYLSEQMAPKFADVMKYLAANKKAYHVVSEGELEKVAGSQ 159

Query: 170 HHGGVCFLIKKRNGTTVQQWVSQAGA--QDCVLALENESNPHNLGGMMRSCAHFGVKGVV 227
           HHGGV  L+K++   ++  +++Q G   QDC+LAL+   NPHNLG + RSCAHFG+ G+V
Sbjct: 160 HHGGVVLLVKRKAVLSLASYLTQNGRKKQDCLLALDGVGNPHNLGAIARSCAHFGISGIV 219

Query: 228 VQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTS 287
           ++D  LL  GAA RTAEGG E V+ ++ DN+   L   +QAGYT+VTTSS  G  L+ + 
Sbjct: 220 MKDPDLLAHGAAARTAEGGVEFVEGLSCDNLPLALQLCKQAGYTLVTTSSHGGVSLYSSQ 279

Query: 288 LPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNIS 329
           LPAK+V+V G+E  G+  +     D+ ++I GT  V  LN+S
Sbjct: 280 LPAKVVIVFGEEMFGVSQSVAKSADIALQIPGTSKVESLNVS 321



>ref|ZP_00155426.2| COG0566: rRNA methylases [Haemophilus influenzae R2846]
          Length = 351

 Score =  218 bits (555), Expect = 4e-55
 Identities = 122/315 (38%), Positives = 190/315 (60%), Gaps = 17/315 (5%)

Query: 36  GGRPGKSRADGGRRPARDDKQSQ------PRDRKWEDSPWRTVSRAPGD--ETPEKADHG 87
           G R  KSR    ++  ++ +  Q      P ++  E    +   ++ G   +T EK   G
Sbjct: 42  GNRNEKSRFPRDKQEVKETRIKQLSLSRAPSNKNTEQPKVQVTIKSTGTVYKTKEKKT-G 100

Query: 88  GISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWM 147
            +S ++   PE +++ RAEE +VYGENAC ALF  RPE+IVR W    ++ +  E L ++
Sbjct: 101 ALSPRA---PEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYL 157

Query: 148 AANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESN 207
           A N+KAYHVVD  EL + SGTEHHGG+C L+KK    T+Q ++     +DC++ L+N +N
Sbjct: 158 AENKKAYHVVDSEELARVSGTEHHGGICLLVKKPRAFTLQGYLDIPHKEDCLVLLDNVNN 217

Query: 208 PHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQ 267
             N+GG++R+CA+FGVK +V  +   L SGA++R AEGGAE+++ +  D+I + L   R+
Sbjct: 218 AQNIGGVLRTCAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRK 277

Query: 268 AGYTVVTTS-SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNV-AG 325
           +GY ++  S ++QG PL K  L  K+V VL    E   ++   P D +V++     + +G
Sbjct: 278 SGYQIIHVSHNKQGDPLDKVRLKNKVVFVLS---ESSTESLATPEDTQVRLTLASPIKSG 334

Query: 326 LNISVATGVLLGEWW 340
           LNI+V  GVLL +W+
Sbjct: 335 LNIAVNAGVLLAKWY 349



>ref|NP_438585.1| rRNA methylase [Haemophilus influenzae Rd KW20]
 sp|P44703|Y424_HAEIN Hypothetical tRNA/rRNA methyltransferase HI0424
 gb|AAC22080.1| rRNA methylase, putative [Haemophilus influenzae Rd KW20]
          Length = 351

 Score =  214 bits (544), Expect = 7e-54
 Identities = 120/315 (38%), Positives = 188/315 (59%), Gaps = 17/315 (5%)

Query: 36  GGRPGKSRADGGRRPARDDKQSQ------PRDRKWEDSPWRTVSRAPGD--ETPEKADHG 87
           G R  KSR    ++  ++ + +Q      P ++  E    +   ++ G   +T EK   G
Sbjct: 42  GNRNEKSRFPRDKQEVKETRITQLSLSRAPSNKNAEQPKVQVTIKSTGTVYKTKEKKT-G 100

Query: 88  GISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWM 147
            +S ++   PE +++ RAEE +VYGENAC ALF  RPE+IVR W    ++ +  E L ++
Sbjct: 101 ALSPRA---PEKIKKNRAEEMKVYGENACLALFAERPESIVRLWATVQMSHKIGEVLSYL 157

Query: 148 AANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESN 207
           A N+KAYHVVD  EL + SGTEHHGG+C L+KK    T+Q ++     +DC++ L+N +N
Sbjct: 158 AENKKAYHVVDSEELARVSGTEHHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNN 217

Query: 208 PHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQ 267
             N+GG++R+CA+FGVK +V  +   L S A++R AEGGAE+++ +  D I + L   R+
Sbjct: 218 AQNIGGVLRTCAYFGVKNIVADNVENLYSAASMRVAEGGAEYIRVLEADYIDSALMQLRK 277

Query: 268 AGYTVVTTS-SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNV-AG 325
           +GY ++  S ++QG PL K  L  K+V VL    E   ++   P D + ++     + +G
Sbjct: 278 SGYQIIHVSHNKQGDPLDKVRLKNKVVFVLS---ESSTESLATPEDTQARLTLASPIKSG 334

Query: 326 LNISVATGVLLGEWW 340
           LNI+V  GVLL +W+
Sbjct: 335 LNIAVNAGVLLAKWY 349



>ref|NP_246796.1| hypothetical protein PM1857 [Pasteurella multocida subsp. multocida
           str. Pm70]
 gb|AAK03941.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 359

 Score =  213 bits (541), Expect = 2e-53
 Identities = 122/310 (39%), Positives = 183/310 (59%), Gaps = 12/310 (3%)

Query: 37  GRPGKSRADGGRRPARDDK---QSQPRDRKWEDSPWRTVSRAPG-DETPEKADHGGISGK 92
           G    +R+   RRP + ++   ++  R    E+   + V ++ G  + P +   G +S +
Sbjct: 52  GNKFSARSKPVRRPQQVEQHISETAMRTASGEEGKVKVVVKSTGASDKPREKKTGALSPR 111

Query: 93  SFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRK 152
           +   PE +++ RAEE +VYGENACQALF  RPE+IVR W    +  +  E   ++A  +K
Sbjct: 112 A---PEKIKKNRAEEMKVYGENACQALFAQRPESIVRIWATVEMAKKSGELFSYLAEQKK 168

Query: 153 AYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLG 212
           AYHVVD AEL   SGT HHGG+C L+KK    T+  ++     QDC++ ++   NPHNLG
Sbjct: 169 AYHVVDSAELALVSGTAHHGGICMLVKKARPFTLAGYLDIPRKQDCLVLIDGVQNPHNLG 228

Query: 213 GMMRSCAHFGVKGVVVQDAAL--LESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGY 270
           G++R+CA FGVKGVV++ A    L + AA+R AEGG E+V+ +   ++   L   RQAGY
Sbjct: 229 GVVRTCAVFGVKGVVIEQALADNLNAPAAMRVAEGGMEYVRVLETTDVPKALAQLRQAGY 288

Query: 271 TVV-TTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNIS 329
            ++  T+++Q KPL K     K+V VL +  +G    A+  ++  V   G    A LNI+
Sbjct: 289 QLIHVTANKQAKPLSKLHFTEKVVFVLNE--QGDASLAQAEDEQVVLSLGNPLKAELNIA 346

Query: 330 VATGVLLGEW 339
           VATG+LL +W
Sbjct: 347 VATGILLAQW 356



>ref|ZP_00156260.2| COG0566: rRNA methylases [Haemophilus influenzae R2866]
          Length = 351

 Score =  213 bits (541), Expect = 2e-53
 Identities = 121/315 (38%), Positives = 190/315 (60%), Gaps = 17/315 (5%)

Query: 36  GGRPGKSRADGGRRPARDDKQSQ------PRDRKWEDSPWRTVSRAPGD--ETPEKADHG 87
           G R  KSR    ++  R+ + +Q      P ++  E    + + ++ G   +T EK   G
Sbjct: 42  GNRNEKSRFPRDKQEVRETRITQLSLSRAPSNKNVEKPKVQVMIKSTGTVYKTKEKKT-G 100

Query: 88  GISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWM 147
            +S ++   PE +++ RAEE +VYGENAC ALF  R E+IVR W    ++ +  E L ++
Sbjct: 101 ALSPRA---PEKIKKNRAEEMKVYGENACLALFAERAESIVRLWATVQMSHKIGEVLSYL 157

Query: 148 AANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESN 207
           A N+KAYHVVD  EL + SGTEHHGG+C L+KK    T+Q ++     +DC++ L+N +N
Sbjct: 158 AENKKAYHVVDSEELARVSGTEHHGGICLLVKKPRAFTLQGYLDIPRNEDCLVLLDNVNN 217

Query: 208 PHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQ 267
             N+GG++R+CA+FGVK +V  +   L SGA++R AEGGAE+++ +  D+I + L   R+
Sbjct: 218 AQNIGGVLRTCAYFGVKNIVADNVENLYSGASMRVAEGGAEYIRVLETDDIDSALMHLRK 277

Query: 268 AGYTVVTTS-SEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNV-AG 325
           +GY ++  S ++QG PL K  L  K+V VL    E   ++     D +V++     + +G
Sbjct: 278 SGYQIIHVSHNKQGDPLDKVRLKNKVVFVLS---ESSTESLATSEDTQVRLTLASPIKSG 334

Query: 326 LNISVATGVLLGEWW 340
           LNI+V  GVLL +W+
Sbjct: 335 LNIAVNAGVLLAKWY 349



>ref|YP_087440.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
 gb|AAU36855.1| SpoU protein [Mannheimia succiniciproducens MBEL55E]
          Length = 369

 Score =  206 bits (524), Expect = 2e-51
 Identities = 123/341 (36%), Positives = 191/341 (56%), Gaps = 11/341 (3%)

Query: 4   EMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSR-ADGGRRPARDDKQSQPRDR 62
           E + K G+ +  + RS D+      + R+ K   R  +   A   R   R +++  P++ 
Sbjct: 31  ERQEKFGQSRAQFSRSQDNDRFAPQDRRSNKDFDRKERQNPAKNDRTFERRNERPIPQET 90

Query: 63  KWEDSPWRTVS----RAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQA 118
           K  ++    V     R+   E P     G +S ++   PE +++ RAEE +VYGE+AC A
Sbjct: 91  KITETKLGNVKVVMKRSGVSEQPRVKKTGSLSPRA---PEKIKKNRAEEMKVYGESACLA 147

Query: 119 LFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLI 178
           LF  RPE+IVR W    +  +  +   ++AAN+K YHVV+ AEL   SGTEHHGG+C L+
Sbjct: 148 LFAERPESIVRVWATVEMAHKIGDMFSYLAANKKVYHVVERAELELVSGTEHHGGICMLV 207

Query: 179 KKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGA 238
           KK    T+  ++     QD ++ L+N  NP N+GG++R+CA +GVKGV+V +A LL S A
Sbjct: 208 KKARPFTLTGYLDIPRQQDALIILDNVRNPQNIGGIIRTCAFYGVKGVIVDNAELLNSAA 267

Query: 239 AIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVV-TTSSEQGKPLFKTSLPAKMVLVLG 297
           A+R AEGG E++  +  ++  + L   R+AGY VV TT+++Q K + K  L  K+V VL 
Sbjct: 268 AMRVAEGGMEYIHQLQTESPDDALAKLRKAGYQVVHTTTNKQAKGVHKLQLAKKVVFVLT 327

Query: 298 QEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338
           +     P   +  +++           GLN++VA GVLL +
Sbjct: 328 ESEN--PALVQSGDEVINLSFANPLKTGLNVAVAAGVLLAK 366



>ref|ZP_00134616.1| COG0566: rRNA methylases [Actinobacillus pleuropneumoniae serovar 1
           str. 4074]
          Length = 345

 Score =  204 bits (520), Expect = 4e-51
 Identities = 114/277 (41%), Positives = 172/277 (62%), Gaps = 14/277 (5%)

Query: 72  VSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAW 131
           +S   G+ T ++   G +S ++   PE +++ RAEE +VYGENAC ALF+ RP+AIVR W
Sbjct: 76  ISVKGGNNTMKEKKTGPLSPRA---PEKIKKNRAEEMKVYGENACIALFKQRPDAIVRLW 132

Query: 132 FIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVS 191
                  +  + L ++A ++KAYHVVD AE+ + +GTEHHG VC L+KK    +++ ++ 
Sbjct: 133 ATVEGAKKLGDMLSYLAEHKKAYHVVDRAEMERVTGTEHHGDVCLLVKKAVPFSLEGYLQ 192

Query: 192 QAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQ 251
               +DC++ L+  +N  N+GG++R+CA +GV GV+V+ A  L S AA R AEGG E V+
Sbjct: 193 VPRKRDCLVLLDAVNNAQNVGGIIRTCAFYGVNGVIVESADTLNSSAAARVAEGGLEFVR 252

Query: 252 PITGDNIVNVLDDFRQAGYTVV-TTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARD- 309
           P+   N    L   R AGY VV  T ++Q  PL KT L AK V VL +    +P  A+D 
Sbjct: 253 PLETKNKQIALTQLRNAGYQVVHLTRNKQAAPLAKTKLAAKTVFVLSE----IP--AQDI 306

Query: 310 --PNDLRVKIDGTGNV-AGLNISVATGVLLGEWWRQN 343
             P D  V++     + +GLN++V+TG+LL +W++ N
Sbjct: 307 EYPEDTTVQLSFENPLNSGLNVAVSTGILLNQWYQAN 343



>ref|ZP_00132468.2| COG0566: rRNA methylases [Haemophilus somnus 2336]
          Length = 350

 Score =  199 bits (507), Expect = 1e-49
 Identities = 102/245 (41%), Positives = 150/245 (61%), Gaps = 5/245 (2%)

Query: 97  PEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHV 156
           PE +++ RAEE +VYGENAC +LF  RPE+IVR W    +  +  +   ++A+N+K YHV
Sbjct: 103 PEKIKKNRAEEMKVYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHV 162

Query: 157 VDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMR 216
           VD +EL   SGTEHHGG+C L+KKR   T+  ++     ++C+L L    NPHN+GG++R
Sbjct: 163 VDNSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPQQKNCLLVLNGVRNPHNIGGIIR 222

Query: 217 SCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVV-TT 275
           +C  +G+  VV+ D  LL S  A+R AEGG E++ P+  D     L   RQAGY +V  +
Sbjct: 223 TCVCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLS 282

Query: 276 SSEQGKPLFKTSLPAKMVLVLGQ-EYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV 334
           S++  K + +  L  K+  VL + + E L D A +  +L +         GLN+SVATG+
Sbjct: 283 SNKHAKTIKQLQLDDKVAFVLSEADTESLADKADELINLSLV---NPLKHGLNVSVATGI 339

Query: 335 LLGEW 339
           LL +W
Sbjct: 340 LLAKW 344



>gb|EAH33449.1| unknown [environmental sequence]
          Length = 130

 Score =  197 bits (502), Expect = 5e-49
 Identities = 98/130 (75%), Positives = 106/130 (81%), Gaps = 11/130 (8%)

Query: 1   MNDEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPR 60
           M+DE+K KSGKVKVMYVRSDDDSD+RTHNPRTGKGGGRPGKSR DG  RPARD++ S+  
Sbjct: 1   MSDELKNKSGKVKVMYVRSDDDSDRRTHNPRTGKGGGRPGKSRVDGRSRPARDERNSRGD 60

Query: 61  DRKWED-----------SPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETR 109
           DRK +D           SPWRTVSRAP D+   K DHGGISGKSFIDPEVLRRQRAEETR
Sbjct: 61  DRKRDDRKRDDFDRDSSSPWRTVSRAPNDDAAVKPDHGGISGKSFIDPEVLRRQRAEETR 120

Query: 110 VYGENACQAL 119
           VYGENACQAL
Sbjct: 121 VYGENACQAL 130



>ref|YP_718507.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
 gb|ABI24577.1| tRNA/rRNA methyltransferase [Haemophilus somnus 129PT]
          Length = 364

 Score =  196 bits (498), Expect = 2e-48
 Identities = 101/245 (41%), Positives = 149/245 (60%), Gaps = 5/245 (2%)

Query: 97  PEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHV 156
           PE +++ RAEE +VYGENAC +LF  RPE+IVR W    +  +  +   ++A+N+K YHV
Sbjct: 117 PEKIKKNRAEEMKVYGENACLSLFAQRPESIVRVWTTVEMAHKVGDLFSYLASNKKVYHV 176

Query: 157 VDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMR 216
           VD +EL   SGTEHHGG+C L+KKR   T+  ++     ++C+L L    N HN+GG++R
Sbjct: 177 VDNSELALVSGTEHHGGICMLVKKRRPFTLHGYLDIPHQKNCLLVLNGVRNAHNIGGIIR 236

Query: 217 SCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVV-TT 275
           +C  +G+  VV+ D  LL S  A+R AEGG E++ P+  D     L   RQAGY +V  +
Sbjct: 237 TCVCYGISAVVIDDVELLHSAVAMRVAEGGMEYIHPLEIDRTETALVKLRQAGYQIVHLS 296

Query: 276 SSEQGKPLFKTSLPAKMVLVLGQ-EYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV 334
           S++  K + +  L  K+  VL + + E L D A +  +L +         GLN+SVATG+
Sbjct: 297 SNKHAKTIKQLQLNDKVAFVLSEADTESLADKADELINLSLV---NPLKHGLNVSVATGI 353

Query: 335 LLGEW 339
           LL +W
Sbjct: 354 LLAKW 358



>ref|NP_873014.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
           35000HP]
 gb|AAP95403.1| conserved putative tRNA/rRNA methyltransferase [Haemophilus ducreyi
           35000HP]
          Length = 349

 Score =  191 bits (486), Expect = 4e-47
 Identities = 99/249 (39%), Positives = 157/249 (63%), Gaps = 9/249 (3%)

Query: 97  PEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHV 156
           PE +++ RAEE +VYGENAC ++FQ RP+AIVR W       +  + L ++A  +KAYH+
Sbjct: 102 PEKIKKNRAEEMKVYGENACLSVFQQRPQAIVRLWATVEGAKKLADELSYLANQKKAYHI 161

Query: 157 VDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMR 216
           VD  E+ + +GT HHG +C L+KK     ++ +++    +DC++ L+N  N  N+GG+MR
Sbjct: 162 VDRIEMDRVTGTPHHGDICLLVKKSAPFILEGYLNIPRKRDCLVLLDNIHNAQNIGGIMR 221

Query: 217 SCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVV-TT 275
           +CA + VKG++V+++  L S AA R AEGG E ++P+   +    L   RQAGY +V  T
Sbjct: 222 TCAFYNVKGIIVENSDTLHSSAAARVAEGGLEFIRPLESKHKEIALTQLRQAGYQIVHLT 281

Query: 276 SSEQGKPLFKTSLPAKMVLVLGQEYEGLP--DAARDPNDLRVKIDGTGNV-AGLNISVAT 332
            ++Q   L KT+L AK+V VL +    +P  D A  PND  V++     + + LN++V+ 
Sbjct: 282 RNKQAPSLAKTTLAAKVVFVLNE----IPTQDIAY-PNDTTVQLSFENLLNSSLNVTVSA 336

Query: 333 GVLLGEWWR 341
           G+LL +W++
Sbjct: 337 GILLNQWYQ 345



>ref|ZP_00733168.1| rRNA methylases [Actinobacillus succinogenes 130Z]
 gb|EAO49760.1| rRNA methylases [Actinobacillus succinogenes 130Z]
          Length = 361

 Score =  182 bits (461), Expect = 3e-44
 Identities = 100/261 (38%), Positives = 153/261 (58%), Gaps = 6/261 (2%)

Query: 77  GDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSV 136
           GD   +K   G +S ++   PE +++ RAEE +V+GENAC  LF  RP +I+R W     
Sbjct: 100 GDIQTKKKKTGPLSPRA---PEKIKKNRAEEMKVFGENACFTLFAQRPASIIRVWTTVET 156

Query: 137 TPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQ 196
             +  E   ++AAN+K YHVVD  EL + SGTEHHGG+C L+KKR+  T++ ++     +
Sbjct: 157 AHKTGEMFSYLAANKKVYHVVDREELERVSGTEHHGGICMLVKKRHPFTLKGYLDITRKE 216

Query: 197 DCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGD 256
           D ++ L+N  NP N+GG++R+CA +GVK ++  +  L +S  A+R AEGGAE V  +  +
Sbjct: 217 DSLVLLDNVRNPQNIGGILRTCAVYGVKALITAEPELTQSANAMRVAEGGAEFVNILQIN 276

Query: 257 NIVNVLDDFRQAGYTVVTTSSE-QGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRV 315
           +    L   RQAGY V+ TS++ Q K + K     K V VL +    +   A++ +++  
Sbjct: 277 DTEQALAQLRQAGYQVIFTSTDKQAKSMNKLMRMKKAVFVLSE--SDVSGFAQNGDEVVN 334

Query: 316 KIDGTGNVAGLNISVATGVLL 336
                    GLN++V  GVLL
Sbjct: 335 LSFANPLKTGLNVAVTAGVLL 355



>ref|ZP_01645038.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
 gb|EAX22059.1| RNA methyltransferase, TrmH family, group 3 [Stenotrophomonas
           maltophilia R551-3]
          Length = 298

 Score =  178 bits (451), Expect = 4e-43
 Identities = 94/236 (39%), Positives = 139/236 (58%), Gaps = 2/236 (0%)

Query: 106 EETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKA 165
           +E R+YG NA QALF  RP+A+ + + ++S+ PR +  L+W  ANR  Y VV+E +L K 
Sbjct: 57  DELRLYGWNAVQALFDKRPQALRKLYLVESLIPRMQPVLKWCVANRVGYRVVEEGDLNKL 116

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCV-LALENESNPHNLGGMMRSCAHFGVK 224
           + T HH G+   + +     + QW+   G    + L L+   NPHN G ++RS AHFGVK
Sbjct: 117 AATTHHEGLVADVLRAPVVPLAQWLEDLGEGPALALWLDGVGNPHNFGAILRSAAHFGVK 176

Query: 225 GVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPL 283
            +++   + L  SGAA R AEGGAE V  +   +    +   R AG+ +  T  E G+ +
Sbjct: 177 ALLLPAGSTLALSGAAARVAEGGAESVPLVQLPDNAQAMAQLRAAGFGLAATLVEGGEDV 236

Query: 284 FKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           F+ SLPA++V V+G E EG+  +     DL+V I G+G V  LN++ AT VLL +W
Sbjct: 237 FRASLPARLVYVMGAEGEGMDRSLASECDLQVSIPGSGAVESLNVASATAVLLAQW 292



>gb|EAG36624.1| unknown [environmental sequence]
          Length = 204

 Score =  177 bits (449), Expect = 8e-43
 Identities = 86/205 (41%), Positives = 130/205 (63%), Gaps = 10/205 (4%)

Query: 55  KQSQPRDRKWEDS---PWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVY 111
           K S P+ +K       PW     A    T  K      +    +  +VL++ R EE ++Y
Sbjct: 4   KTSAPQPKKTHSELQKPWTKAKPASVKSTEAKP-----AAAKSVSAKVLKQNRQEEAKIY 58

Query: 112 GENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHH 171
           GENAC+  F  RP+A+VR +  + + P+F + ++++AAN+KAYHVV EAEL K +G++HH
Sbjct: 59  GENACRVAFLQRPQALVRLYLSEQMAPKFADLMKYLAANKKAYHVVSEAELEKVAGSQHH 118

Query: 172 GGVCFLIKKRNGTTVQQWVSQAG--AQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQ 229
           GGV  L+K++   ++  +++Q G   QDC+LAL+   NPHNLG + RSCAHFG+ G++++
Sbjct: 119 GGVVLLVKRKAVLSLATYLTQNGRKKQDCLLALDGVGNPHNLGAIARSCAHFGISGIIMK 178

Query: 230 DAALLESGAAIRTAEGGAEHVQPIT 254
           D  LL  GAA RTAEGG E V+ ++
Sbjct: 179 DPELLAHGAAARTAEGGVEFVEGLS 203



>ref|YP_365165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 emb|CAJ25165.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
          Length = 390

 Score =  174 bits (440), Expect = 8e-42
 Identities = 108/315 (34%), Positives = 164/315 (52%), Gaps = 20/315 (6%)

Query: 29  NPRTGKGGGRPGKSRADGGRRPARDD-KQSQPRDRKWEDSPWRTVSRAPGDETPEKADHG 87
           +P   +  GR G+   DGG  P+ +   ++ PR      +P     RAP   T       
Sbjct: 83  DPTMTQHDGRGGRPPRDGGSGPSHNPWGRAAPRT----PAPRSAAPRAPAQHT------- 131

Query: 88  GISGKSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWM 147
                +   P       A E R+YG NA QA+F++RP+A+ + +  ++  P+FK  L W 
Sbjct: 132 ----SAVTPPAAAASGNAREVRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWC 187

Query: 148 AANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLAL--ENE 205
              R  Y VVDEA+L+K + + HH G+   + +     +Q+W++ A  Q  VLAL  +  
Sbjct: 188 VTQRIGYRVVDEADLSKLAASAHHEGIVAEVLRVAPQPLQEWLA-ALPQGPVLALWLDGV 246

Query: 206 SNPHNLGGMMRSCAHFGVKGVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDD 264
            NPHN G ++RS AHFGV G+++   + L  SGAA R AEGGAE V  +   +    +  
Sbjct: 247 GNPHNFGAILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQ 306

Query: 265 FRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVA 324
            RQAG+ +  T  + G+ +F  +LP ++V V+G E EG+  A     DL++ I G+G V 
Sbjct: 307 LRQAGFAIAATLVDGGQDVFAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVE 366

Query: 325 GLNISVATGVLLGEW 339
            LN++ AT V    W
Sbjct: 367 SLNVASATAVFQAAW 381



>ref|NP_638511.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gb|AAM42435.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 300

 Score =  173 bits (439), Expect = 1e-41
 Identities = 109/297 (36%), Positives = 155/297 (52%), Gaps = 16/297 (5%)

Query: 47  GRRPARDDKQSQPRDRKWEDSPW-RTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRA 105
           G RP RD   S         +PW R   RAP    P           S   P       A
Sbjct: 8   GARPPRDTAGSGAAPL----NPWGRAAPRAPAPSAPAPRT-------SAAAPAAASANNA 56

Query: 106 EETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKA 165
            E R+YG NA QA+F++RP+A+ + +  ++  P+FK  L W  A R  Y VV+EA+LTK 
Sbjct: 57  RELRLYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKL 116

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLAL--ENESNPHNLGGMMRSCAHFGV 223
           + + HH G+   + +     +Q W++ A  Q  VLAL  +   NPHN G ++RS AHFGV
Sbjct: 117 ASSTHHEGIVAEVLRVPPQPLQDWLA-ALPQGPVLALWLDGVGNPHNFGAILRSSAHFGV 175

Query: 224 KGVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 282
            G+++   + L  SGAA R AEGGAE V  +   +    +   RQAG+ V  T  + G+ 
Sbjct: 176 AGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQD 235

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           +F T+LP ++V V+G E EG+        DL++ I G+G V  LN++ AT V    W
Sbjct: 236 VFATALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVFQAAW 292



>ref|NP_643623.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
 gb|AAM38159.1| tRNA/rRNA methyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 305

 Score =  172 bits (436), Expect = 2e-41
 Identities = 107/307 (34%), Positives = 161/307 (52%), Gaps = 20/307 (6%)

Query: 37  GRPGKSRADGGRRPARDD-KQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFI 95
           GR G+   DGG  P+ +   ++ PR      +P     RAP    P        +  +  
Sbjct: 6   GRGGRPPRDGGSGPSHNPWGRAAPRT----PAPRSAAPRAPAQHAPAATPSAAAASGN-- 59

Query: 96  DPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYH 155
                    A E R+YG NA QA+F++RPEA+ + +  ++  P+FK  L W    R  Y 
Sbjct: 60  ---------AREVRLYGINAVQAVFKTRPEALRKLYLSEARIPQFKALLAWCVTQRIGYR 110

Query: 156 VVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLAL--ENESNPHNLGG 213
           VV+EA+L+K + + HH GV   + +     +Q+W++ A  Q  VLAL  +   NPHN G 
Sbjct: 111 VVEEADLSKLAASAHHEGVVAEVLRVTPHPLQEWLA-ALPQGPVLALWLDGVGNPHNFGA 169

Query: 214 MMRSCAHFGVKGVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTV 272
           ++RS AHFGV G+++   + L  SGAA R AEGGAE V  +   +    L   RQAG+ +
Sbjct: 170 ILRSSAHFGVAGLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATALAQLRQAGFAI 229

Query: 273 VTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVAT 332
             T  + G+ +F  +LP ++V V+G E +G+  A     DL++ I G+G V  LN++ AT
Sbjct: 230 AATLVDGGQDVFAAALPQRLVYVMGAESDGMDRAFARDCDLQLSIRGSGKVESLNVASAT 289

Query: 333 GVLLGEW 339
            V    W
Sbjct: 290 AVFQAAW 296



>ref|YP_242094.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
 gb|AAY48074.1| tRNA/rRNA methyltransferase [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 300

 Score =  172 bits (435), Expect = 3e-41
 Identities = 108/297 (36%), Positives = 154/297 (51%), Gaps = 16/297 (5%)

Query: 47  GRRPARDDKQSQPRDRKWEDSPW-RTVSRAPGDETPEKADHGGISGKSFIDPEVLRRQRA 105
           G RP RD   S         +PW R   RAP    P           S   P       A
Sbjct: 8   GARPPRDTAGSGAAPL----NPWGRAAPRAPAPSAPAPRT-------SAAAPAAASANNA 56

Query: 106 EETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKA 165
            E R+YG NA QA+F++RP+A+ + +  ++  P+FK  L W  A R  Y VV+EA+LTK 
Sbjct: 57  RELRLYGINAIQAVFKARPQALRKIYLTEARIPQFKALLAWCVAQRLGYRVVEEADLTKL 116

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLA--LENESNPHNLGGMMRSCAHFGV 223
           + + HH G+   + +     +Q W++ A  Q  VLA  L+   NPHN G ++RS AHFGV
Sbjct: 117 ASSTHHEGIVAEVLRVPPQPLQDWLA-ALPQGPVLALWLDGVGNPHNFGAILRSSAHFGV 175

Query: 224 KGVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 282
            G+++   + L  SG A R AEGGAE V  +   +    +   RQAG+ V  T  + G+ 
Sbjct: 176 AGLLLPAGSTLGLSGTAARVAEGGAEAVPLVQLPDNAQAMAQLRQAGFAVAATLVDGGQD 235

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           +F T+LP ++V V+G E EG+        DL++ I G+G V  LN++ AT V    W
Sbjct: 236 VFATALPQRLVYVMGAESEGMDRQFASACDLQLSIHGSGLVESLNVASATAVFQAAW 292



>ref|YP_202027.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gb|AAW76642.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 353

 Score =  169 bits (427), Expect = 3e-40
 Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 10/296 (3%)

Query: 49  RPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR--QRAE 106
           R AR  ++  PR      +PW   +R+P   TP  A            P   R       
Sbjct: 57  RGARPPREGAPRGST-AGNPW---NRSPPRSTPAAAPSSTTLASPGGSPAAGRAAGHARA 112

Query: 107 ETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKAS 166
           E R+YG NA QA+F++RP+A+ + +  ++  P+FK  L W  + R  Y VV+EA+L+K +
Sbjct: 113 EMRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLA 172

Query: 167 GTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLAL--ENESNPHNLGGMMRSCAHFGVK 224
            + HH G+   + +     +Q+W++ A  Q  VLAL  +   NPHN G M+RS AHFGV 
Sbjct: 173 ASAHHEGIVAEVLRVAPQPLQEWLA-ALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVA 231

Query: 225 GVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPL 283
           G+++   + L  SGAA R AEGGAE V  +   +    +   RQAG+ +  T  + G+ +
Sbjct: 232 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDV 291

Query: 284 FKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           F  +LP ++V V+G E EG+  A     DL++ I G+G V  LN++ AT V    W
Sbjct: 292 FAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAW 347



>ref|YP_452219.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 dbj|BAE69945.1| tRNA/rRNA methyltransferase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 303

 Score =  169 bits (427), Expect = 3e-40
 Identities = 105/296 (35%), Positives = 158/296 (53%), Gaps = 10/296 (3%)

Query: 49  RPARDDKQSQPRDRKWEDSPWRTVSRAPGDETPEKADHGGISGKSFIDPEVLRR--QRAE 106
           R AR  ++  PR      +PW   +R+P   TP  A            P   R       
Sbjct: 7   RGARPPREGAPRGST-AGNPW---NRSPPRSTPAAAPSSTTLASPGGSPAAGRAAGHARA 62

Query: 107 ETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKAS 166
           E R+YG NA QA+F++RP+A+ + +  ++  P+FK  L W  + R  Y VV+EA+L+K +
Sbjct: 63  EMRLYGINAVQAVFKARPQALRKLYLSEARIPQFKALLAWCVSQRIGYRVVEEADLSKLA 122

Query: 167 GTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDCVLAL--ENESNPHNLGGMMRSCAHFGVK 224
            + HH G+   + +     +Q+W++ A  Q  VLAL  +   NPHN G M+RS AHFGV 
Sbjct: 123 ASAHHEGIVAEVLRVAPQPLQEWLA-ALPQGPVLALWLDGVGNPHNFGAMLRSSAHFGVA 181

Query: 225 GVVVQDAALLE-SGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPL 283
           G+++   + L  SGAA R AEGGAE V  +   +    +   RQAG+ +  T  + G+ +
Sbjct: 182 GLLLPAGSTLGLSGAAARVAEGGAEAVPLVQLPDTATAMAQLRQAGFAIAATLVDGGQDV 241

Query: 284 FKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           F  +LP ++V V+G E EG+  A     DL++ I G+G V  LN++ AT V    W
Sbjct: 242 FAAALPQRLVYVMGAESEGMDRAFARDCDLQLSIRGSGKVESLNVASATAVFQAAW 297



>gb|EAK20017.1| unknown [environmental sequence]
          Length = 156

 Score =  152 bits (385), Expect = 2e-35
 Identities = 72/147 (48%), Positives = 106/147 (72%)

Query: 196 QDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITG 255
           +DC+LAL++ SN HNLG + RSCAHFGV G++++   LL+SGAA+RTAEGG E V  ++ 
Sbjct: 8   KDCLLALDSVSNAHNLGAITRSCAHFGVGGIIMKQPELLQSGAALRTAEGGGEFVDGLSC 67

Query: 256 DNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRV 315
           DN+   L   ++AGYT++TTSS  G  L++++LPAK+V+V G+E  G+        D+ +
Sbjct: 68  DNLPLALQLCKEAGYTLITTSSHGGTSLYQSTLPAKVVIVFGEEMFGVSKNVAKSADIAL 127

Query: 316 KIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +I G+G V  LN+SVA  ++LGEW+RQ
Sbjct: 128 QIPGSGKVESLNVSVAASLILGEWYRQ 154



>gb|EAG53376.1| unknown [environmental sequence]
          Length = 125

 Score =  123 bits (308), Expect = 2e-26
 Identities = 60/125 (48%), Positives = 85/125 (68%)

Query: 220 HFGVKGVVVQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQ 279
           HFG+ G+V++D  LL  GAA RTAEGG E V+ ++ DN+   L   +QAGYT+VTTSS  
Sbjct: 1   HFGISGIVMKDPDLLAHGAAARTAEGGVEFVEGLSCDNLPLALQLCKQAGYTLVTTSSHG 60

Query: 280 GKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
           G  L+ + LPAK+V+V G+E  G+  +     D+ ++I GTG V  LN+SVA  ++LGEW
Sbjct: 61  GVSLYSSQLPAKVVIVFGEEMFGVSQSVAKSADIALQIPGTGKVESLNVSVAASLILGEW 120

Query: 340 WRQNK 344
           +RQ +
Sbjct: 121 YRQQQ 125



>ref|YP_114407.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
 gb|AAU92001.1| RNA methyltransferase, TrmH family, group 3 [Methylococcus
           capsulatus str. Bath]
          Length = 250

 Score =  105 bits (263), Expect = 3e-21
 Identities = 77/247 (31%), Positives = 120/247 (48%), Gaps = 21/247 (8%)

Query: 109 RVYGENACQALFQSRPEAIVRAWF--------IQSVTPRFKE-ALRWMAANRKAYHVVDE 159
           RV+G +A +A     P+ IV+AW         +Q+V  R  E  +  + A+RK       
Sbjct: 6   RVWGIHAAEAALDYSPDKIVKAWLDDHRMQNRLQAVATRLDELGVEIVRADRK------- 58

Query: 160 AELTKASGTEHHGGVCF---LIKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMR 216
             L + +    H G+     L  ++    +   +  A      L L++  +PHNLG  +R
Sbjct: 59  -RLDRLADPRKHQGILLELDLPGEQGEAELLDTLDAADGHPLYLVLDHVQDPHNLGACLR 117

Query: 217 SCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTT 275
           +C   GVKG+VV +D ++  +    + A G AE V      N+   LD F+Q GY VV  
Sbjct: 118 TCDAAGVKGLVVTKDQSVGLTPTVAKVASGAAETVPVYRVTNLARCLDRFKQRGYWVVGA 177

Query: 276 SSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVL 335
           + E  + L++  L   +V+V+G E  GL    R+  D  ++I   G V  LN+SVATG++
Sbjct: 178 AGEAERTLYELDLRLPLVVVMGAEGVGLRRLTRERCDFLLRIPMVGGVESLNLSVATGIV 237

Query: 336 LGEWWRQ 342
           L E  RQ
Sbjct: 238 LYEVMRQ 244



>ref|YP_377312.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
 gb|ABB26268.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9902]
          Length = 652

 Score =  104 bits (260), Expect = 6e-21
 Identities = 99/335 (29%), Positives = 149/335 (44%), Gaps = 22/335 (6%)

Query: 21  DDSDKRTHNPRTGKG--GGRPGKSRADGGRRPARDDKQSQPRDRKWEDSPWRTVS---RA 75
           DD  KR++  R  +G     P + R+D   RPA    Q + RDR  E SP R  S   R 
Sbjct: 206 DDDGKRSYERRDDQGTRSSAPNRFRSD---RPA----QGRFRDRS-ERSPDRYRSGDERR 257

Query: 76  PGDETPEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQS-RPEAIVRAWFIQ 134
                P   D G  S +  + PE        +  ++G +A QA  +S RP  I R W   
Sbjct: 258 QSSPRPRFGDSGPRSQRPNLQPEAEASTPPADDLIWGRHASQAALESGRP--IHRIWCTP 315

Query: 135 SV--TPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWV-- 190
            +   P+F + LR    +      V  A L + +G   H G+       +   +   +  
Sbjct: 316 EMRSAPKFLQLLREAKTSGVLVEEVTWARLAQVTGGSVHQGIALQTAAADTLDLSALIEG 375

Query: 191 -SQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAE 248
            S+ G    +LAL+  ++PHNLG ++RS    G  G+V+ Q  +   +G+A + A G  E
Sbjct: 376 CSELGEPPLLLALDGITDPHNLGAVVRSAEAMGAHGLVLPQRRSAGLTGSAAKVAAGAME 435

Query: 249 HVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAAR 308
           H+      N+   L+  + +GY V+  ++E    L    L   +VLV G E +GL    R
Sbjct: 436 HLPVARVVNLNRSLEKLKDSGYRVIGLAAEGDVTLMDVDLEGPLVLVTGSEDQGLSLLTR 495

Query: 309 DPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQN 343
              D  V+I   G    LN SVAT + + E  R+N
Sbjct: 496 RHCDQLVRIPLRGITPSLNASVATALCVYEVARRN 530



>ref|ZP_01640236.1| RNA methyltransferase TrmH, group 3 [Pseudomonas putida W619]
 gb|EAX17663.1| RNA methyltransferase TrmH, group 3 [Pseudomonas putida W619]
          Length = 248

 Score =  103 bits (256), Expect = 2e-20
 Identities = 69/241 (28%), Positives = 119/241 (49%), Gaps = 4/241 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSVT-PRFKEALRWMAANRKAYHVVDEAELTKASG 167
           ++YG +A QAL Q  P+ + + W  +  + PR +  L   A NR      +  EL     
Sbjct: 6   KIYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +      +L L+  ++PHNLG  +R+    G   
Sbjct: 66  GVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA 125

Query: 226 VVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           VVV +D +   +    + A G AE +  +   N+   L+  +Q G  VV T+ E  + ++
Sbjct: 126 VVVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  L   +V+++G E +G+    R+  D  VK+  +G+V+ LN+SVATGV L E  RQ +
Sbjct: 186 QQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMSGSVSSLNVSVATGVCLFEAVRQRQ 245

Query: 345 A 345
           A
Sbjct: 246 A 246



>ref|YP_693912.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
 emb|CAL17640.1| RNA methyltransferase, TrmH family, group 3 [Alcanivorax
           borkumensis SK2]
          Length = 251

 Score =  102 bits (254), Expect = 3e-20
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 10/234 (4%)

Query: 112 GENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAE----LTKASG 167
           G +A +AL + RPEA++  +   +   R    L  +    K + +  +      L K +G
Sbjct: 9   GFHAVEALLRHRPEAVLELFVQDTRADRDDPRLAALMQAAKDFGIAIQRARREVLEKHAG 68

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
            ++ G V     +R  + + + QW+    A+  +L LEN ++PHNLG  +RS    GV+ 
Sbjct: 69  PQNQGIVARARPRRPLDESALLQWLDGKPAKPLLLVLENVTDPHNLGACLRSADAAGVQA 128

Query: 226 VVV--QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTS-SEQGKP 282
           V+V  ++AA L +  A RTA G AE +      N+ ++LD  R  G  VV T+  E+ + 
Sbjct: 129 VIVPRRNAAGL-TPVACRTAVGAAESLAYYEIGNLASLLDQLRDRGVWVVGTALEERSES 187

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLL 336
           LF    P  + +V+G E  GL    RD  D  ++I   G V  LN+SVATGV+L
Sbjct: 188 LFTFQAPESLAVVMGAEGSGLKRLTRDKCDQLLEIPMAGEVQSLNVSVATGVML 241



>ref|ZP_00902910.1| RNA methyltransferase TrmH, group 3 [Pseudomonas putida F1]
 gb|EAP47933.1| RNA methyltransferase TrmH, group 3 [Pseudomonas putida F1]
          Length = 248

 Score =  102 bits (253), Expect = 4e-20
 Identities = 67/241 (27%), Positives = 118/241 (48%), Gaps = 4/241 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSVT-PRFKEALRWMAANRKAYHVVDEAELTKASG 167
           ++YG +A QAL Q  P+ + + W  +  + PR +  L   A NR      +  E+     
Sbjct: 6   KIYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWVE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +      +L L+  ++PHNLG  +R+    G   
Sbjct: 66  GVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA 125

Query: 226 VVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V +D +   +    + A G AE +  +   N+   L+  +Q G  VV T+ E  + ++
Sbjct: 126 VIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  L   +V+++G E +G+    R+  D  VK+   G+V+ LN+SVATGV L E  RQ +
Sbjct: 186 QQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRR 245

Query: 345 A 345
           A
Sbjct: 246 A 246



>ref|YP_340969.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
 emb|CAI87527.1| Gm2251 methyltransferase of 23S rRNA [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 247

 Score =  101 bits (252), Expect = 5e-20
 Identities = 76/241 (31%), Positives = 116/241 (48%), Gaps = 12/241 (4%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQS-----VTPRFKEALRWMAANRKAYHVVDEAELTK 164
           ++G ++ +A+  S PE  V  + ++       TP   EAL++  +       +    L  
Sbjct: 6   IFGFHSVEAILASEPERFVEIYALKGRDDKRSTPIIDEALKFGIS----VQYMQRKALDS 61

Query: 165 ASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDC--VLALENESNPHNLGGMMRSCAHFG 222
            S  E H G+   +K       +   +    +D   +L L+  ++PHNLG  +RS    G
Sbjct: 62  KSKGEQHQGIIANVKAAPTFNEKDLDAIIAREDTPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 223 VKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK 281
           V  V+V +D +   +G A + A G AE V  I   N+   L + + AG  VV T+ E   
Sbjct: 122 VHAVIVPKDRSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDN 181

Query: 282 PLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWR 341
            +F  SL   M +V+G E EG+    R+  DL VKI   G V+ LN+SVATG+ L E  R
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDLLVKIPMAGTVSSLNVSVATGICLFEVLR 241

Query: 342 Q 342
           Q
Sbjct: 242 Q 242



>ref|YP_610360.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           entomophila L48]
 emb|CAK17577.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas]
          Length = 247

 Score =  101 bits (251), Expect = 7e-20
 Identities = 68/240 (28%), Positives = 114/240 (47%), Gaps = 4/240 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSVT-PRFKEALRWMAANRKAYHVVDEAELTKASG 167
           ++YG +A QAL Q  P+ + + W  +  + PR +  L   A NR      +  EL     
Sbjct: 6   KIYGVHAVQALLQHHPKRVKQIWLSEGRSEPRIQALLALAAENRVQVGQAERRELDAWVE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +      +L L+  ++PHNLG  +R+    G   
Sbjct: 66  GVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           VV+         A +R    GA  V P+    N+   L+  +Q G  VV T+ E  + ++
Sbjct: 126 VVIPKDKSASLTAVVRKVACGAAEVIPLVAVTNLSRTLEKLQQRGLWVVGTAGEAEQEIY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  L   +V+++G E +G+    R+  D  VK+   G+V+ LN+SVATGV L E  RQ +
Sbjct: 186 QQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQ 245



>ref|YP_384315.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
 gb|ABB31590.1| RNA methyltransferase TrmH, group 3 [Geobacter metallireducens
           GS-15]
          Length = 250

 Score =  101 bits (251), Expect = 7e-20
 Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 4/244 (1%)

Query: 106 EETRVYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKA 165
           +E  +YG N+     + +  A        +   R ++ L+            D+ ++++ 
Sbjct: 2   KEEILYGINSAMEALRGKRRAFELFVSRDASDRRMEKLLKLATEKGVPVRNRDKRDISRL 61

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQWVS---QAGAQDCVLALENESNPHNLGGMMRSCAHFG 222
            GT+HH GV   ++    T +   +    ++G +  +LAL+   +PHNLG ++RS A  G
Sbjct: 62  CGTDHHQGVALKLEGFPYTGLSDIIDAWRESGERGLILALDGVQDPHNLGALIRSAACAG 121

Query: 223 VKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK 281
             GV++ +D A   +    ++A G AE +      N+   LD+ ++AG+ +   +     
Sbjct: 122 AHGVIIPKDRAARVTATVEKSAAGAAETIPVAQVTNLAQALDELKEAGFWIYGAADSAAS 181

Query: 282 PLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWR 341
            L+   L   +V+V+G E EG+    R   D  V I   G V+ LN SVA GV+L E  R
Sbjct: 182 SLYDQDLSGNVVIVIGSEGEGVRPLVRKKCDFLVAIPLRGGVSSLNASVAGGVILFEVLR 241

Query: 342 QNKA 345
           Q  A
Sbjct: 242 QRLA 245



>ref|ZP_01297365.1| hypothetical protein PaerP_01000864 [Pseudomonas aeruginosa PA7]
          Length = 248

 Score =  100 bits (248), Expect = 2e-19
 Identities = 71/238 (29%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSV-TPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           +VYG +A +AL +  P+ + + W  +    PR +      A  R      D  EL + + 
Sbjct: 6   KVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +A     +LAL+  ++PHNLG  +R+    GV  
Sbjct: 66  GVHQGVVAEVSPSQVWGENMLEELLERAEGAPLLLALDGVTDPHNLGACLRTADAAGVLA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  +Q G  VV T+ E  K L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +  L    VLV+G E +G+    R+  D   ++   G+V+ LN+SVATGV L E  RQ
Sbjct: 186 QLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243



>ref|NP_746983.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
 sp|Q88DE7|RLMB_PSEPK 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase)
 gb|AAN70447.1|AE016686_1 RNA methyltransferase, TrmH family, group 3 [Pseudomonas putida
           KT2440]
          Length = 248

 Score =  100 bits (248), Expect = 2e-19
 Identities = 66/240 (27%), Positives = 117/240 (48%), Gaps = 4/240 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSVT-PRFKEALRWMAANRKAYHVVDEAELTKASG 167
           ++YG +A QAL Q  P+ + + W  +  + PR +  L   A NR      +  E+     
Sbjct: 6   KIYGVHAVQALLQHHPKRVKQIWLSEGRSEPRLETLLALAAENRVPVGQAERREMDAWVE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +      +L L+  ++PHNLG  +R+    G   
Sbjct: 66  GVHQGVVAEVSPSQVWGELMLEELLERTETPPLILVLDGVTDPHNLGACLRTADAAGATA 125

Query: 226 VVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V +D +   +    + A G AE +  +   N+   L+  +Q G  VV T+ E  + ++
Sbjct: 126 VIVPKDKSATLTPVVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEQEIY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  L   +V+++G E +G+    R+  D  VK+   G+V+ LN+SVATGV L E  RQ +
Sbjct: 186 QQDLTGPLVMIMGAEGKGMRRLTREHCDFLVKLPMAGSVSSLNVSVATGVCLFEAVRQRQ 245



>ref|ZP_01526054.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas mendocina
           ymp]
 gb|EAV22954.1| RNA methyltransferase, TrmH family, group 3 [Pseudomonas mendocina
           ymp]
          Length = 250

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 69/241 (28%), Positives = 117/241 (48%), Gaps = 4/241 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQS-VTPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           +VYG +A +AL +  P+ + + W  +S   PR +  L   A +R      +  EL + + 
Sbjct: 6   KVYGVHAVEALLRHHPKRVKQLWLAESRQAPRIQPMLELAAQHRVPVGHKERQELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      + + + ++     +L L+  ++PHNLG  +R+    G + 
Sbjct: 66  GVHQGVVAEVSPSQVWGENMLDELLERSEGVPLLLVLDGVTDPHNLGACLRTADAAGAQA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  ++ G  VV T+ E  + L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQKKGLWVVGTAGEAEQELY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  +    VLV+G E +G+    R+  D  VK+   G+V+ LN+SVATGV L E  RQ +
Sbjct: 186 QLDMTGPTVLVMGAEGKGMRRLTREHCDYLVKLPMGGSVSSLNVSVATGVCLFEAVRQRQ 245

Query: 345 A 345
           A
Sbjct: 246 A 246



>ref|NP_253623.1| probable rRNA methylase [Pseudomonas aeruginosa PAO1]
 ref|ZP_00971789.1| COG0566: rRNA methylases [Pseudomonas aeruginosa 2192]
 sp|Q9HUM8|RLMB_PSEAE 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase)
 gb|AAG08321.1|AE004906_9 probable rRNA methylase [Pseudomonas aeruginosa PAO1]
          Length = 248

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 70/238 (29%), Positives = 114/238 (47%), Gaps = 4/238 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSV-TPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           +VYG +A +AL +  P+ + + W  +    PR +      A  R      D  EL + + 
Sbjct: 6   KVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + ++     +LAL+  ++PHNLG  +R+    GV+ 
Sbjct: 66  GVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  +Q G  VV T+ E  K L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +  L    VLV+G E +G+    R+  D   ++   G+V+ LN+SVATGV L E  RQ
Sbjct: 186 QLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243



>ref|ZP_00966061.1| COG0566: rRNA methylases [Pseudomonas aeruginosa C3719]
 ref|ZP_01367953.1| hypothetical protein PaerPA_01005108 [Pseudomonas aeruginosa PACS2]
          Length = 248

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 70/238 (29%), Positives = 113/238 (47%), Gaps = 4/238 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSV-TPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           +VYG +A +AL +  P+ + + W  +    PR +      A  R      D  EL + + 
Sbjct: 6   KVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + +      +LAL+  ++PHNLG  +R+    GV+ 
Sbjct: 66  GVHQGVVAEVSPSQVWGENMLEELLERGEGVPLLLALDGVTDPHNLGACLRTADAAGVQA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  +Q G  VV T+ E  K L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +  L    VLV+G E +G+    R+  D   ++   G+V+ LN+SVATGV L E  RQ
Sbjct: 186 QLDLKGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFEILRQ 243



>ref|YP_793404.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
 gb|ABJ14321.1| putative RNA methyltransferase, TrmH family, group 3 [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 248

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 69/238 (28%), Positives = 114/238 (47%), Gaps = 4/238 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSV-TPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           +VYG +A +AL +  P+ + + W  +    PR +      A  R      D  EL + + 
Sbjct: 6   KVYGVHAVEALLRHHPKRVKQLWLAEGRHDPRVQVLTELAAGFRIPVGQRDRRELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      +++ + ++     +LAL+  ++PHNLG  +R+    GV+ 
Sbjct: 66  GVHQGVVAEVSPSQVWGENMLEELLERSEGVPLLLALDGVTDPHNLGACLRTADAAGVQA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  +Q G  VV T+ E  K L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEADKTLY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +  L    VLV+G E +G+    R+  D   ++   G+V+ LN+SVATGV L +  RQ
Sbjct: 186 QLDLTGPTVLVMGAEGKGMRRLTREHCDFLARLPMAGSVSSLNVSVATGVCLFKILRQ 243



>ref|YP_722010.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
 gb|ABG51537.1| RNA methyltransferase, TrmH family, group 3 [Trichodesmium
           erythraeum IMS101]
          Length = 288

 Score = 97.1 bits (240), Expect = 1e-18
 Identities = 70/258 (27%), Positives = 124/258 (48%), Gaps = 10/258 (3%)

Query: 92  KSFIDPEVLRRQRAEETRVYGENACQALFQSRPEAIVRAWFIQSVT--PRFKEALRWMAA 149
           K +  P V   +  +E  +YG +  QA  +S    + R W I S+   PRF   L     
Sbjct: 28  KKYYSPTV---KEEDEDLIYGRHTVQAALKSE-RYLNRIWIISSLRYDPRFHILLNEAKT 83

Query: 150 NRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQ---DCVLALENES 206
                  VD+  L + +  +HH G+   I       + + +SQA ++     +L  +  +
Sbjct: 84  KGTIIDEVDDRRLDQITRRKHHQGIVAQICPYEYKELHELISQAKSKTDRSVLLVADGIN 143

Query: 207 NPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDF 265
           +PHNLG ++R+    G++G+V+ Q  A+  +    + A G  E+       N+ + L++ 
Sbjct: 144 DPHNLGAIIRTGEALGIQGLVIPQRRAVGITSTVTKVAAGALENFPVARVINLNSALEEL 203

Query: 266 RQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAG 325
           ++ G+ +  T ++ G+P+        +VLV+G E EGL    +   D  V I  +G+   
Sbjct: 204 KKEGFWIYGTVAKDGEPIHTVKFTGAIVLVVGSEGEGLSLLIQKNCDALVSIPMSGSTPS 263

Query: 326 LNISVATGVLLGEWWRQN 343
           LN+SVATG+ + E  RQ+
Sbjct: 264 LNVSVATGMAIYEIHRQH 281



>ref|YP_381465.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
 gb|ABB34910.1| RNA methyltransferase TrmH, group 3 [Synechococcus sp. CC9605]
          Length = 542

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 98/349 (28%), Positives = 146/349 (41%), Gaps = 31/349 (8%)

Query: 3   DEMKGKSGKVKVMYVRSDDDSDKRTHNPRTGKGGGRPGKSRADGGRRPARDDKQSQPRDR 62
           D  K + G     + R  + S   + N R+G G  R    R    RR    D++ QP  R
Sbjct: 135 DRPKERFGNRSRSFDRDQNASRSGSQNERSGPGRFRDRNDRYGDRRRSG--DERRQPSQR 192

Query: 63  KWEDSPWRTVSRAPGDET-PEKADHGGISGKSFIDPEVLRRQRAEETRVYGENACQALFQ 121
                     SR+  DE  P++ D           PE        +  ++G +A QA  +
Sbjct: 193 ----------SRSRFDEARPQRPDAA---------PEAAAATPPADDLIWGRHATQAALE 233

Query: 122 S-RPEAIVRAWFIQSV--TPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLI 178
           + RP  I R W    +    +F + LR   A+      V  A L + +G   H G+    
Sbjct: 234 AGRP--IHRIWCTAEMRSASKFLQLLRDAKASGVLVEEVTWARLGQITGGSVHQGIALQT 291

Query: 179 KKRNGTTVQQWV---SQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALL 234
                  +   +   S  G    ++AL+  ++PHNLG ++RS    G  GVV+ Q  +  
Sbjct: 292 AAAETLDLDSLIEGCSDLGEPPLLVALDGVTDPHNLGAVVRSAEAMGAHGVVIPQRRSAG 351

Query: 235 ESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVL 294
            +G+A + A G  EH+      N+   L+  + AGY VV  ++E    L    L   MVL
Sbjct: 352 LTGSAAKVAAGALEHLPVARVVNLNRSLEKLKDAGYRVVGLAAEGDVTLTDVDLSGPMVL 411

Query: 295 VLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQN 343
           V G E +GL    R   D  V+I   G    LN SVAT + + E  R+N
Sbjct: 412 VTGSEDQGLSLMTRRHCDQLVRIPLRGITPSLNASVATALCVYEVARRN 460



>ref|ZP_01110324.1| Gm2251 methyltransferase of 23S rRNA [Alteromonas macleodii 'Deep
           ecotype']
 gb|EAR05408.1| Gm2251 methyltransferase of 23S rRNA [Alteromonas macleodii 'Deep
           ecotype']
          Length = 246

 Score = 96.7 bits (239), Expect = 2e-18
 Identities = 76/249 (30%), Positives = 120/249 (48%), Gaps = 18/249 (7%)

Query: 105 AEETRVYGENACQALFQSRPEAIVRAWFIQS-----VTPRFKEALRW----MAANRKAYH 155
           A++  +YG +A Q++ +  PE ++  W ++      +T    +A R+      + RKA  
Sbjct: 2   AQQEWLYGLHAMQSVLEKEPERVMEVWVLKGRNDDRLTNIVNQARRFGISVQFSQRKA-- 59

Query: 156 VVDEAELTKASGTEHHGGVCFLIKKRNGTTVQ-QWVSQAGAQDCVLALENESNPHNLGGM 214
            +D+    K SG +H G V      R         + ++ AQ  +L L+  ++PHNLG  
Sbjct: 60  -LDD----KVSGEQHQGVVARAKPARVLDEADLDKILESEAQPLILVLDGVTDPHNLGAC 114

Query: 215 MRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVV 273
           +R+    GV  VVV +D +   +G   + A G AE V  I   N+   L   +  G  +V
Sbjct: 115 LRTADGAGVHAVVVPKDKSASLNGTVRKVACGAAEVVPLIQITNLARTLKHLQDKGLWIV 174

Query: 274 TTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATG 333
            T+ E  K L+   L     LV+G E +G+    ++  D  VK+   G+V  LN+SVATG
Sbjct: 175 GTAGETDKTLYDVDLKGSTALVMGAEGKGMRRLTKETCDELVKLPMAGSVTSLNVSVATG 234

Query: 334 VLLGEWWRQ 342
           V L E  RQ
Sbjct: 235 VCLYEIVRQ 243



>ref|ZP_00418500.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii AvOP]
 gb|EAM05287.1| RNA methyltransferase TrmH, group 3 [Azotobacter vinelandii AvOP]
          Length = 247

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 68/238 (28%), Positives = 109/238 (45%), Gaps = 4/238 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQS-VTPRFKEALRWMAANRKAYHVVDEAELTKASG 167
           R+YG +A +AL +  P  + R W  +    PR +  L      R A    +  EL + + 
Sbjct: 6   RIYGVHAVEALLRHHPRRVKRLWLAEGRQDPRVQALLELARQARIAVGQRERRELDEWAE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      + + + +      +L L+  ++PHNLG  +R+    G + 
Sbjct: 66  GVHQGVVAEVSPSQVWGEAMLDELLDRCEGPPLLLVLDGVTDPHNLGACLRTADAAGAQA 125

Query: 226 VVVQDAALLESGAAIRTAEGGAEHVQPITG-DNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V         A +R    GA  V P+    N+   L+  RQ G   V T+ E  + L+
Sbjct: 126 VIVPKDKSATLNATVRKVACGAAEVVPLVAVTNLARTLEKLRQRGLWTVGTAGEVEQELY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
              L    VL++G E +G+    R+  D  V++   G+V+ LN+SVATGV L E  RQ
Sbjct: 186 GVDLRGPTVLIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEAVRQ 243



>ref|ZP_01125854.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
 gb|EAR23337.1| RNA methyltransferase, TrmH family, group 3 [Nitrococcus mobilis
           Nb-231]
          Length = 256

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 66/238 (27%), Positives = 115/238 (48%), Gaps = 5/238 (2%)

Query: 110 VYGENACQALFQSRPEAIVRAWFI-QSVTPRFKEALRWMAANRKAYHVVDEAELTKASGT 168
           ++G ++ +A  +  P  +V  W   Q+ + R++   R + A     H+VD  +L + +  
Sbjct: 7   IHGLHSVRAAVRYDPTHVVEVWLDRQARSGRWQALRRQLEALACPVHLVDRRQLDRLTSG 66

Query: 169 EHHGGVCFLIK---KRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
           + H GV         R    ++  +S+ G    +L L+   +PHNLG  +R+ A  GV+ 
Sbjct: 67  QVHQGVAIRYAGQPPRAEHELEALLSELGPDPLLLVLDQVQDPHNLGACLRTAAGAGVQA 126

Query: 226 VVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+  +D A+  +    + A G  +H+      N+   L   R+AG  ++  + +    L+
Sbjct: 127 VITPRDRAVGLTPTVYKAATGAVQHIPLFQVTNLARTLRKLREAGMWLIGAAEQADVTLY 186

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           +  L   +VLV+G E  GL    R   D  ++I   G +  LN+SVATGV+L E  RQ
Sbjct: 187 EVDLSGPLVLVMGAEEAGLRRLTRACCDRLIRIPMLGAIDSLNVSVATGVVLYEVVRQ 244



>ref|ZP_01614161.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
 gb|EAW26607.1| 23S rRNA (Gm2251)-methyltransferase [Alteromonadales bacterium
           TW-7]
          Length = 247

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 71/244 (29%), Positives = 116/244 (47%), Gaps = 12/244 (4%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQS-----VTPRFKEALRWMAANRKAYHVVDEAELTK 164
           ++G ++ +A+    PE  +  + ++      +TP   EA ++  +       +    L  
Sbjct: 6   IFGFHSVEAILAKEPERFLEIYALKGRDDKRLTPIIDEARKFGIS----VQFMQRKALDN 61

Query: 165 ASGTEHHGGVCFLIKKRNGTTVQQWVSQAGAQDC--VLALENESNPHNLGGMMRSCAHFG 222
            S  E H G+   +K       +        ++   +L L+  ++PHNLG  +RS    G
Sbjct: 62  KSKDEQHQGIIANVKAAPTYNEKDLDVIIAREETPFLLVLDGITDPHNLGACLRSADAAG 121

Query: 223 VKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGK 281
           V  ++V +D +   +G A + A G AE V  I   N+   L + + AG  VV T+ E   
Sbjct: 122 VHAIIVPKDKSAKLNGTARKVACGAAETVPLIQVTNLARTLREIKDAGVWVVGTAGETDT 181

Query: 282 PLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWR 341
            +F  SL   M +V+G E EG+    R+  D+ VKI   G+V+ LN+SVATG+ L E  R
Sbjct: 182 HVFDASLTGPMAIVMGAEGEGMRRLTREHCDVLVKIPMAGSVSSLNVSVATGICLFEVLR 241

Query: 342 QNKA 345
           Q  A
Sbjct: 242 QRNA 245



>ref|YP_422512.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 dbj|BAE51953.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 267

 Score = 95.5 bits (236), Expect = 4e-18
 Identities = 65/205 (31%), Positives = 107/205 (52%), Gaps = 6/205 (2%)

Query: 142 EALRWMAANRKAYHVVDEAELTK--ASGTEHHGGVCFLIKKRNGTTVQQWVSQA-GAQDC 198
           EA + + A +     ++ +E+ +  A G+ H G V  L++    TT++  +  A GA   
Sbjct: 62  EAAKSLPATKVPVETMERSEIDRLLAPGSVHQG-VALLVEPLPATTIEDVIRMADGAPSA 120

Query: 199 -VLALENESNPHNLGGMMRSCAHFGVKGVVVQDAALL-ESGAAIRTAEGGAEHVQPITGD 256
            VL L+  ++PHN+G ++RS A FG   VV  D     E+G   ++A G  E +  +   
Sbjct: 121 LVLVLDQVTDPHNVGAILRSAAAFGALAVVAPDRHTPDETGTLAKSASGALERMPLVRVT 180

Query: 257 NIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVK 316
           N+V  L+D ++AG+     +++  K L + +L  K+VLVLG E EG+    R+  D  V+
Sbjct: 181 NVVRTLEDLKKAGFWTAGLAADAPKTLAEANLSGKVVLVLGAEGEGMRRLTREHCDHLVR 240

Query: 317 IDGTGNVAGLNISVATGVLLGEWWR 341
           +   G +  LN+S A  V L E  R
Sbjct: 241 LPMCGEMESLNVSNAAAVALYEMRR 265



>ref|ZP_01313434.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
 gb|EAT14847.1| RNA methyltransferase TrmH, group 3 [Desulfuromonas acetoxidans DSM
           684]
          Length = 244

 Score = 95.1 bits (235), Expect = 5e-18
 Identities = 69/232 (29%), Positives = 114/232 (49%), Gaps = 5/232 (2%)

Query: 110 VYGENAC-QALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGT 168
           ++G NA  +AL Q R   +V  +      PR +E +        A    +  +L K  G 
Sbjct: 5   LFGLNAVFEALGQGRK--VVALYVEAQRNPRLEEIVAQATERHVAVKQCERRQLDKMVGD 62

Query: 169 EHHGGVCFLIKKRNGTTVQQWVSQAGAQD-CVLALENESNPHNLGGMMRSCAHFGVKGVV 227
             H GV   +K ++  ++ Q ++Q+   +   L L+  ++PHN G ++RS A  G +GV+
Sbjct: 63  VRHQGVVAQVKAQDFVSLAQLLAQSSQSERFFLILDGITDPHNFGALIRSAAAAGCQGVI 122

Query: 228 -VQDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKT 286
             +D +   +G   +TA G   +VQ     N+   +++ ++AG  V   + E+G+ LF+ 
Sbjct: 123 FAKDRSCPVTGIVEKTAAGTLGYVQLCQVTNLGRAIEELKKAGVWVYGLAGEEGQSLFEA 182

Query: 287 SLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGE 338
            L A + LV G E  G+    R   D  + I   G V  LN+SVATG+ L E
Sbjct: 183 PLSAPIALVAGSEGRGIRPLIRKLCDGLIAIPMPGRVESLNVSVATGIALFE 234



>ref|ZP_01624902.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
 gb|EAW42253.1| RNA methyltransferase TrmH, group 3 [marine gamma proteobacterium
           HTCC2080]
          Length = 247

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 14/243 (5%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRK-AYHVVDEAELTKASGT 168
           VYG +A +AL +  P AI   W   +   +  + L  +AA++  A   V  A L + +  
Sbjct: 5   VYGFHAVEALLRREPRAIATLWLETNRRDKRAQTLLQLAADQGVAVERVSGAALDEVAAG 64

Query: 169 EHHGGVCFLIKKRNGTTVQQWVSQAGA------QDC--VLALENESNPHNLGGMMRSCAH 220
            H G     ++ ++G T +  + +AG       QD   +L L+  ++PHNLG  +R+   
Sbjct: 65  RHQG---IAVQVKSGATTEA-IDEAGLMVLLQRQDSPLLLILDGVTDPHNLGACLRTADA 120

Query: 221 FGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQ 279
            GV  VVV QD A   S  A + A G A+ V  +   N+   L   + AG  ++ TS + 
Sbjct: 121 AGVTAVVVPQDGAAGLSPVARKVACGAADTVPFVRVTNLARTLGQLKAAGVWLIGTSDKA 180

Query: 280 GKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEW 339
            + LF+      + +V+G E  G+     +  D  V +   G V+ LN+SVATG+ L E 
Sbjct: 181 SRTLFEQDFSGPVAIVMGAEGAGMRRLTEENCDFLVSLPMQGAVSSLNVSVATGICLFEA 240

Query: 340 WRQ 342
            RQ
Sbjct: 241 VRQ 243



>ref|YP_113068.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
 gb|AAU93262.1| RNA methyltransferase, TrmH family [Methylococcus capsulatus str.
           Bath]
          Length = 282

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 80/266 (30%), Positives = 121/266 (45%), Gaps = 22/266 (8%)

Query: 87  GGISGKSFIDPEVLRRQ-----RAEET--RVYGENACQALFQSRPEAIVRAWFIQSVTPR 139
           GG  GK    P V   +      AEE   ++ G +A  A+F+  PE +VR ++  S+   
Sbjct: 11  GGAPGKRGAGPAVRAARPAHSGAAEEKLGKIAGLSAVAAVFRHEPERVVRLYYDDSMKTA 70

Query: 140 FKEALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKRNG-----TTVQQWVSQAG 194
                  +A  R+ Y ++   E+ + +GT  HGG+   ++ R        T Q+W ++AG
Sbjct: 71  AGPFCAVLARLRRPYRLLPPEEMARVAGTVLHGGIVAAVRPREVPDLTLETAQRW-AKAG 129

Query: 195 AQDCVLALENESNPHNLGGMMRSCAHFGVKGVVVQD--AALLESGAAIRTAEGGAEHVQP 252
           A    + L+   NPHNLG + R+ A FG+  +V+ D  A    S AA R AEGG E +  
Sbjct: 130 A--ATVLLDGVGNPHNLGAIARTLAFFGLGHLVLSDHPAQAGLSDAAYRVAEGGLEFLDV 187

Query: 253 ITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLP---AKMVLVLGQEYEGLPDAARD 309
                    L   R   + V T    +G P    ++P     ++LVLG E  GLP     
Sbjct: 188 RRLTGAAQALRSLRPHFHVVGTALHARGIP--PEAVPRDRRPILLVLGNEENGLPPPTLA 245

Query: 310 PNDLRVKIDGTGNVAGLNISVATGVL 335
             +  V I G G +  LN+S    +L
Sbjct: 246 ACETVVTIPGGGQIQSLNVSATAAIL 271



>ref|YP_233688.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
 gb|AAY35650.1| RNA methyltransferase TrmH, group 3 [Pseudomonas syringae pv.
           syringae B728a]
          Length = 251

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 4/241 (1%)

Query: 109 RVYGENACQALFQSRPEAIVRAWFIQSVT-PRFKEALRWMAANRKAYHVVDEAELTKASG 167
           ++YG +A +AL +  P+ +   W  +    PR +  +   A NR      +  E+     
Sbjct: 6   KIYGVHAVEALLRHHPKRVKHIWLAEGRNDPRVQTLVALAAENRVTIGQAERREMDAWVE 65

Query: 168 TEHHGGVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKG 225
             H G V  +   +      + + + ++     +L L+  ++PHNLG  +R+    G   
Sbjct: 66  GVHQGVVADVSPSQVWGEAMLDELLDRSEGSPLLLVLDGVTDPHNLGACLRTADAAGALA 125

Query: 226 VVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLF 284
           V+V +D +   + A  + A G AE +  +   N+   L+  +Q G  VV T+ E    L+
Sbjct: 126 VIVPKDKSATLTPAVRKVACGAAEVIPLVAVTNLARTLEKLQQRGLWVVGTAGEAEVELY 185

Query: 285 KTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
           +  L    ++++G E +G+    R+  D  V++   G+V+ LN+SVATGV L E  RQ  
Sbjct: 186 QQDLTGPTIIIMGAEGKGMRRLTREHCDYLVRLPMAGSVSSLNVSVATGVCLFEALRQRS 245

Query: 345 A 345
           A
Sbjct: 246 A 246



>ref|YP_421836.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
 dbj|BAE51277.1| rRNA methylase [Magnetospirillum magneticum AMB-1]
          Length = 214

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 65/212 (30%), Positives = 105/212 (49%), Gaps = 13/212 (6%)

Query: 142 EALRWMAANRKAYHVVDEAELTKASGTEHHGGVCFLIKKR-----NGTTVQQWVSQAGAQ 196
           E  + MAA  K Y +    ELTK  G+  HGG+  + + +     +      W  +    
Sbjct: 7   EMCKAMAAAHKPYRMAPTEELTKILGSPLHGGILAVTRPKPIRVFDPADAHVWAKEGRP- 65

Query: 197 DCVLALENESNPHNLGGMMRSCAHFGVKGVVVQD--AALLESGAAIRTAEGGAEHVQPIT 254
             +L L+   NPHNLG + R+ A FG++ +++ D       S A++R +EGG E V+ I 
Sbjct: 66  --LLVLDGVGNPHNLGAIARTMAFFGLERLLISDHPGQASPSEASLRVSEGGLEWVEVIR 123

Query: 255 GDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKT-SLPAKMV-LVLGQEYEGLPDAARDPND 312
               V  L   R + + +V T+   GKP+ +  + P K + L+LG E +GLP A     D
Sbjct: 124 AQKFVAALKRLRDS-HRIVGTALGSGKPVAEVLNRPGKPIALILGNEEDGLPTATLAACD 182

Query: 313 LRVKIDGTGNVAGLNISVATGVLLGEWWRQNK 344
             V + G+G V  LN++    +L+ E  +Q +
Sbjct: 183 DIVTLPGSGRVQSLNVAATAAILIHELAKQRR 214



>ref|ZP_00814670.1| RNA methyltransferase TrmH, group 3 [Shewanella putrefaciens CN-32]
 ref|YP_964791.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
 gb|EAO93941.1| RNA methyltransferase TrmH, group 3 [Shewanella putrefaciens CN-32]
 gb|ABM26237.1| RNA methyltransferase, TrmH family, group 3 [Shewanella sp.
           W3-18-1]
          Length = 246

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 68/243 (27%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAY----HVVDEAELTKA 165
           ++G +A +AL +  PE I+  W +Q    R  E L  +A   KA+     V     L   
Sbjct: 7   IFGIHAVEALLKHSPERIIELWLLQG---RDDERLTVLADQAKAFGTTIQVASRKALDDK 63

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQW--VSQAGAQDCVLALENESNPHNLGGMMRSCAHFGV 223
           + +  H G+   +K       Q    +     Q  +L L+  ++PHNLG  +R+    GV
Sbjct: 64  AESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGV 123

Query: 224 KGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 282
           +G++V +D ++  +    + A G AE V      N+   +   +  G  +V T+ E    
Sbjct: 124 QGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCE 183

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           L++  L   + + +G E +GL   +R+  D  + I   G+V+ LN+SVATGV L E  RQ
Sbjct: 184 LYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGVCLFEAVRQ 243

Query: 343 NKA 345
            ++
Sbjct: 244 RRS 246



>ref|ZP_01432728.1| RNA methyltransferase TrmH, group 3 [Shewanella baltica OS195]
 gb|EAU28809.1| RNA methyltransferase TrmH, group 3 [Shewanella baltica OS195]
          Length = 246

 Score = 94.4 bits (233), Expect = 9e-18
 Identities = 67/243 (27%), Positives = 115/243 (47%), Gaps = 10/243 (4%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAY----HVVDEAELTKA 165
           ++G +A +AL +  PE I+  W +Q    R  E L  +A   KA+     V     L   
Sbjct: 7   IFGIHAVEALLKHSPERIIELWLLQG---RDDERLTVLANQAKAFGTTIQVASRKALDDK 63

Query: 166 SGTEHHGGVCFLIKKRNGTTVQQW--VSQAGAQDCVLALENESNPHNLGGMMRSCAHFGV 223
           + +  H G+   +K       Q    +     Q  +L L+  ++PHNLG  +R+    GV
Sbjct: 64  AESSQHQGIVARVKAAKVLNEQDLDVLLANTEQPFLLILDGVTDPHNLGACLRNADAAGV 123

Query: 224 KGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKP 282
           +G++V +D ++  +    + A G AE V      N+   +   +  G  +V T+ E    
Sbjct: 124 QGIIVPKDNSVGLTATVSKVACGAAETVPLFQVTNLARTMRHLQDKGVWIVGTAGEADCE 183

Query: 283 LFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           L++  L   + + +G E +GL   +R+  D  + I   G+V+ LN+SVATG+ L E  RQ
Sbjct: 184 LYQADLKGPLAIAMGAEDKGLRRLSRESCDSLISIPMAGSVSSLNVSVATGICLFEAVRQ 243

Query: 343 NKA 345
            ++
Sbjct: 244 RRS 246



>ref|YP_432983.1| rRNA methylases [Hahella chejuensis KCTC 2396]
 gb|ABC28558.1| rRNA methylases [Hahella chejuensis KCTC 2396]
          Length = 238

 Score = 94.0 bits (232), Expect = 1e-17
 Identities = 73/236 (30%), Positives = 113/236 (47%), Gaps = 4/236 (1%)

Query: 114 NACQALFQSRPEAIVRAWFI-QSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTEHHG 172
           +A +AL Q  P  I R     Q    R +E  +     R  +  V ++ L KA+   H G
Sbjct: 2   HAVRALLQKHPGKIDRLLLSEQRHDHRLQEIAQLAQERRVPFSQVGKSALDKAADGAHQG 61

Query: 173 GVCFLIKKR--NGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVV-Q 229
            V +L   R  N T +++ + +      +L L+  ++PHNLG  +RS    GV  V+V +
Sbjct: 62  VVAYLKADRMSNETDLEELLEKLEEPALLLVLDGVTDPHNLGACLRSANAAGVHAVIVPK 121

Query: 230 DAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLP 289
           D +   + AA + A G AE    I   N+   L   +  G  +V  + E  + L++  L 
Sbjct: 122 DKSAPLNAAARKVACGAAEVTPLIRVTNLARTLKHIQTYGVWLVGAAGEAEQSLYQADLK 181

Query: 290 AKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQNKA 345
             + +V+G E +G+    R+  D  V I   G V+ LN+SVATGV L E  RQ +A
Sbjct: 182 GSVAIVMGAEDKGMRRLTRENCDSLVNIPMLGEVSSLNVSVATGVCLFEAVRQRQA 237



>ref|YP_855245.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gb|ABK35940.1| RNA methyltransferase, TrmH family, group 3 [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 249

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 74/251 (29%), Positives = 120/251 (47%), Gaps = 22/251 (8%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQS-----VTPRFKE----ALRWMAANRKAYHVVDEA 160
           +YG +A  AL +  PE  +  W ++      + P   E     L+  + NRK    +D+ 
Sbjct: 6   IYGIHAVSALLERTPERFIEVWALKGRDDDRLQPLLAELDALGLKVQSVNRKT---LDD- 61

Query: 161 ELTKASGTEHHGGVCFL-----IKKRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMM 215
              KA G  H G +  +     + + +  ++   +++   Q  +L L+  ++PHNLG  +
Sbjct: 62  ---KAEGNNHQGIMARVKEAPKLAEHDLASLLDKLAEQQTQPFLLVLDGVTDPHNLGACL 118

Query: 216 RSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVT 274
           RS    GV  V+V +D A   +    + A G AE V  I   N+   L + ++ G  +V 
Sbjct: 119 RSADAAGVHAVIVPRDKATGLTPIVRKVACGAAEVVPLIQVTNLARSLRELQERGVWIVG 178

Query: 275 TSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGV 334
           T+ E    +++  L   M LV+G E +G+    R+  D  V I   G V+ LN+SVATGV
Sbjct: 179 TAGEADHDVYQAKLTGPMALVMGAEGKGMRRLTREHCDELVSIPMAGAVSSLNVSVATGV 238

Query: 335 LLGEWWRQNKA 345
            L E  RQ +A
Sbjct: 239 CLFEAVRQRRA 249



>ref|NP_900819.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
 sp|Q7NYX3|RLMB_CHRVO 23S rRNA (guanosine-2'-O-)-methyltransferase rlmB (23S rRNA Gm2251
           2'-O-methyltransferase)
 gb|AAQ58824.1| probable RNA methyltransferase [Chromobacterium violaceum ATCC
           12472]
          Length = 248

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 66/236 (27%), Positives = 103/236 (43%), Gaps = 3/236 (1%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSV-TPRFKEALRWMAANRKAYHVVDEAELTKASGT 168
           ++G +A  A     P++++  W        R K  L    A     H+VD+  L   SG 
Sbjct: 7   IHGFHAINARLWQNPKSLIEIWLAGGRHDARAKAVLDKAGAENVKLHIVDKERLDSMSGN 66

Query: 169 EHHGGVCFLIK-KRNGTTVQQWVSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVV 227
             H GV  +I    N   +   +        +L L+  ++PHNLG  +R     G   V+
Sbjct: 67  ARHQGVVAMIDASMNYVDLDDVLENLSEPPLLLILDGVTDPHNLGACLRVADAMGAHAVI 126

Query: 228 V-QDAALLESGAAIRTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKT 286
             +D +   +    + A G AE V  IT  N+   L D + AG  +  T+ E    L+  
Sbjct: 127 APKDRSATLNATVSKVACGAAEVVPYITVTNLARTLRDLKDAGVWIAGTTMEADTDLYHF 186

Query: 287 SLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
                +  V+G E EG+    R+  D+ V I   G V  LN+SV++G++L E  RQ
Sbjct: 187 DASGPLAWVMGAEGEGMRRLTREHCDVLVSIPMFGTVESLNVSVSSGMVLSESRRQ 242



>ref|YP_516683.1| hypothetical protein DSY0450 [Desulfitobacterium hafniense Y51]
 ref|ZP_01371393.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
 dbj|BAE82239.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gb|EAT50135.1| RNA methyltransferase, TrmH family, group 3 [Desulfitobacterium
           hafniense DCB-2]
          Length = 246

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 5/237 (2%)

Query: 110 VYGENACQALFQSRPEAIVRAWFIQSVTPRFKEALRWMAANRKAYHVVDEAELTKASGTE 169
           VYG NA   L QS           +    RF++ +    A +  +  VD+A L + +   
Sbjct: 6   VYGRNAVWELLQSGKPVNKLLLQGEGTAGRFQDIVSHARAQKIPFQFVDKAALDRLTEKA 65

Query: 170 HHGGVCFLIKKRNGTTVQQWVSQAGAQD---CVLALENESNPHNLGGMMRSCAHFGVKGV 226
            H G+   +  R    V   ++ AG +     +L L+   +PHNLG ++R+    GV GV
Sbjct: 66  KHQGILAYVAPREYAEVDDILALAGEKGEDPFILVLDEVEDPHNLGALIRTADAAGVHGV 125

Query: 227 VVQDAALLESGAAI-RTAEGGAEHVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFK 285
           ++     +   A + +T+ G  EHV      N+V  L D ++AG  V    +E G  +++
Sbjct: 126 IIPKRRSVSLTATVAKTSAGAVEHVLVARVGNLVQTLKDLQKAGCWVSGAEAE-GTEVYR 184

Query: 286 TSLPAKMVLVLGQEYEGLPDAARDPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342
           + L    V+V+G E +GL    ++  D  V +   G +  LN SVA  +L+ E  RQ
Sbjct: 185 SDLTGARVIVIGSEGKGLSRLVKETCDEIVSLPMKGRINSLNASVAGSILMYEVLRQ 241



>ref|YP_631271.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
 gb|ABF90065.1| RNA methyltransferase, TrmH family, group 3 [Myxococcus xanthus DK
           1622]
          Length = 282

 Score = 93.2 bits (230), Expect = 2e-17
 Identities = 76/274 (27%), Positives = 120/274 (43%), Gaps = 14/274 (5%)

Query: 82  EKADHGGISGKSFIDPEVLRRQRAEETR------VYGENACQALFQSRPEAIVRAWFIQS 135
           E++  GG  G+   +    R  R E         VYG N   A  ++RP+ + R + ++ 
Sbjct: 3   ERSSKGGRGGERASEEVPQRASRGERGGGEASRFVYGVNPVLAALRARPDEVERLFLVEG 62

Query: 136 VTPRFKEALRWMAANR----KAYHVVDEAELTKASGTEHHGGVCFL--IKKRNGTTVQQW 189
                + A   ++  R    +   V  E   T A G  H G V  L   K      + + 
Sbjct: 63  QLGA-RAAGELLSRAREFGIRVEKVTRERLGTLAEGGVHQGVVVELRGFKYAELEDLLEA 121

Query: 190 VSQAGAQDCVLALENESNPHNLGGMMRSCAHFGVKGVVV-QDAALLESGAAIRTAEGGAE 248
               G    V+ L+   +PHNLG ++RS    G  GVV+ +D A+  +G   + + G  E
Sbjct: 122 AKALGQPPLVVVLDGIQDPHNLGAIIRSADALGAHGVVIAKDRAVQVTGTVAKASAGAVE 181

Query: 249 HVQPITGDNIVNVLDDFRQAGYTVVTTSSEQGKPLFKTSLPAKMVLVLGQEYEGLPDAAR 308
           H +     NI   L++ ++AG  V     +  +P++   L   + LV+G E  G+ D   
Sbjct: 182 HSRIARVVNISRALEELKEAGLWVAAADVDAKEPMWSARLDGPLALVVGAEGAGVRDGVL 241

Query: 309 DPNDLRVKIDGTGNVAGLNISVATGVLLGEWWRQ 342