Blast performed on February-12-2007
BLASTP 2.2.13 [Nov-27-2005]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Database: nr_env 
           5,549,519 sequences; 1,762,256,069 total letters

Query= EG11355 fliA 
         (239 letters)

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_288383.1|  flagellar biosynthesis sigma factor FliA [...   466   e-130 
ref|ZP_00734131.1|  COG1191: DNA-directed RNA polymerase spe...   465   e-130 
ref|YP_541127.1|  flagellar biosynthesis; alternative sigma ...   465   e-129 
ref|YP_407557.1|  alternative sigma factor 28 [Shigella boyd...   464   e-129 
ref|YP_402747.1|  alternative sigma factor 28 [Shigella dyse...   459   e-128 
ref|ZP_00704211.1|  COG1191: DNA-directed RNA polymerase spe...   447   e-124 
ref|ZP_00706052.1|  COG1191: DNA-directed RNA polymerase spe...   446   e-124 
ref|NP_456519.1|  flagellar biosynthesis sigma factor FliA [...   444   e-123 
ref|ZP_01587549.1|  RNA polymerase, sigma 28 subunit [Entero...   439   e-122 
ref|YP_150204.1|  flagellar biosynthesis sigma factor FliA [...   424   e-117 
ref|ZP_00831229.1|  COG1191: DNA-directed RNA polymerase spe...   395   e-108 
ref|YP_001006726.1|  RNA polymerase sigma factor for flagell...   395   e-108 
ref|ZP_00835323.1|  COG1191: DNA-directed RNA polymerase spe...   394   e-108 
ref|ZP_00821981.1|  COG1191: DNA-directed RNA polymerase spe...   394   e-108 
ref|ZP_00824975.1|  COG1191: DNA-directed RNA polymerase spe...   392   e-108 
ref|YP_070241.1|  flagellar biosynthesis sigma factor FliA [...   388   e-106 
ref|YP_049839.1|  flagellar biosynthesis sigma factor FliA [...   386   e-106 
ref|ZP_01534355.1|  RNA polymerase, sigma 28 subunit [Serrat...   385   e-105 
ref|NP_405407.1|  flagellar biosynthesis sigma factor FliA [...   384   e-105 
ref|ZP_00798059.1|  COG1191: DNA-directed RNA polymerase spe...   382   e-105 
ref|NP_929222.1|  flagellar biosynthesis sigma factor FliA [...   377   e-103 
sp|P52621|FLIA_YEREN  RNA polymerase sigma factor for flagel...   377   e-103 
gb|AAF33246.1|AF221596_2  FliA [Proteus mirabilis]                372   e-102 
emb|CAB46360.1|  FliA, sigma 28 [Xenorhabdus nematophila]         360   4e-98 
prf||2209422A  fliA gene                                          360   4e-98 
gb|AAB38522.1|  flagellin sigma factor [Yersinia enterocolit...   358   1e-97 
gb|AAY89702.1|  FliA [Escherichia coli]                           313   5e-84 
gb|EAG49173.1|  unknown [environmental sequence]                  288   2e-76 
ref|ZP_00824848.1|  COG1191: DNA-directed RNA polymerase spe...   277   4e-73 
ref|ZP_00417386.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   268   2e-70 
ref|YP_453739.1|  RNA polymerase sigma factor for flagellar ...   265   2e-69 
ref|YP_574061.1|  sigma 28 (Flagella/Sporulation) [Chromohal...   263   4e-69 
ref|NP_871202.1|  hypothetical protein WGLp199 [Wigglesworth...   254   3e-66 
dbj|BAE19818.1|  RNA polymerase sigma factor for flagellar o...   248   2e-64 
ref|ZP_01503755.1|  RNA polymerase, sigma 28 subunit [Burkho...   243   6e-63 
gb|EAH94150.1|  unknown [environmental sequence]                  243   8e-63 
ref|YP_367620.1|  flagellar biosynthesis sigma factor FliA [...   242   1e-62 
ref|YP_622706.1|  RNA polymerase, sigma 28 subunit [Burkhold...   242   1e-62 
ref|ZP_01662067.1|  putative RNA polymerase sigma factor for...   241   2e-62 
ref|YP_560849.1|  Sigma 28 (Flagella/Sporulation) [Burkholde...   241   2e-62 
ref|YP_443660.1|  RNA polymerase sigma factor for flagellar ...   241   2e-62 
ref|YP_109887.1|  flagellar biosynthesis sigma factor FliA [...   241   2e-62 
ref|NP_522949.1|  flagellar biosynthesis sigma factor FliA [...   241   2e-62 
ref|YP_104354.1|  flagellar biosynthesis sigma factor FliA [...   241   2e-62 
ref|ZP_01511612.1|  RNA polymerase, sigma 28 subunit [Burkho...   240   4e-62 
ref|YP_772080.1|  RNA polymerase, sigma 28 subunit [Burkhold...   240   4e-62 
ref|ZP_00988084.1|  COG1191: DNA-directed RNA polymerase spe...   239   7e-62 
ref|ZP_00946393.1|  RNA polymerase sigma-f factor for flagel...   239   7e-62 
ref|ZP_01558323.1|  RNA polymerase, sigma 28 subunit [Burkho...   239   1e-61 
ref|ZP_00420219.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   238   3e-61 
ref|ZP_01572586.1|  RNA polymerase, sigma 28 subunit, FliA/W...   236   1e-60 
ref|ZP_00981110.1|  COG1191: DNA-directed RNA polymerase spe...   235   2e-60 
ref|YP_959243.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   229   9e-59 
ref|YP_932611.1|  RNA polymerase sigma factor [Azoarcus sp. ...   225   2e-57 
ref|YP_748621.1|  RNA polymerase, sigma 28 subunit [Nitrosom...   224   3e-57 
ref|YP_412008.1|  sigma 28 (Flagella/Sporulation) [Nitrososp...   223   5e-57 
ref|NP_842480.1|  Sigma-70 factor family [Nitrosomonas europ...   221   2e-56 
ref|ZP_01306831.1|  flagellar biosynthesis sigma factor [Oce...   221   2e-56 
ref|YP_546056.1|  sigma 28 (Flagella/Sporulation) [Methyloba...   220   6e-56 
ref|YP_315007.1|  RNA polymerase sigma-70 factor [Thiobacill...   219   7e-56 
ref|YP_001022269.1|  DNA-directed RNA polymerase specialized...   217   4e-55 
ref|YP_436274.1|  flagellar biosynthesis sigma factor FliA [...   216   8e-55 
ref|YP_928155.1|  RNA polymerase sigma factor, FliA/WhiG [Sh...   215   1e-54 
ref|ZP_00836666.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   214   3e-54 
ref|YP_585843.1|  sigma 28 (Flagella/Sporulation) [Ralstonia...   214   4e-54 
ref|ZP_01527552.1|  RNA polymerase, sigma 28 subunit [Pseudo...   213   5e-54 
ref|YP_988006.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   213   7e-54 
ref|ZP_01580250.1|  RNA polymerase, sigma 28 subunit [Delfti...   213   9e-54 
gb|EAK29096.1|  unknown [environmental sequence]                  212   1e-53 
gb|AAT50509.1|  PA1455 [synthetic construct]                      212   1e-53 
ref|YP_391017.1|  sigma 28 (Flagella/Sporulation) [Thiomicro...   212   1e-53 
ref|YP_129152.1|  flagellar biosynthesis sigma factor FliA [...   212   1e-53 
ref|NP_250146.1|  flagellar biosynthesis sigma factor FliA [...   212   1e-53 
ref|ZP_00976377.1|  COG1191: DNA-directed RNA polymerase spe...   212   1e-53 
ref|ZP_00970197.1|  COG1191: DNA-directed RNA polymerase spe...   212   1e-53 
ref|ZP_01522745.1|  RNA polymerase, sigma 28 subunit [Comamo...   212   2e-53 
ref|ZP_01219054.1|  flagellar biosynthesis sigma factor FliA...   212   2e-53 
ref|YP_562352.1|  RNA polymerase sigma factor, FliA/WhiG [Sh...   212   2e-53 
ref|YP_524941.1|  sigma 28 (Flagella/Sporulation) [Rhodofera...   211   2e-53 
ref|NP_900692.1|  RNA polymerase sigma factor for flagellar ...   211   2e-53 
ref|ZP_01167378.1|  flagellar biosynthesis sigma factor FliA...   211   2e-53 
ref|ZP_00813387.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   211   3e-53 
ref|YP_001002067.1|  RNA polymerase, sigma 28 subunit, FliA/...   211   3e-53 
ref|YP_283969.1|  Sigma-70 region 4 [Dechloromonas aromatica...   210   6e-53 
ref|NP_879812.1|  RNA polymerase sigma factor for flagellar ...   210   6e-53 
ref|YP_962841.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   209   8e-53 
ref|YP_609299.1|  sigma factor FliA [Pseudomonas entomophila...   209   1e-52 
gb|AAN03367.1|AF481091_4  FliA [Pseudomonas fluorescens]          209   1e-52 
ref|YP_275521.1|  RNA polymerase sigma factor for flagellar ...   209   1e-52 
ref|YP_258793.1|  flagellar biosynthesis sigma factor FliA [...   209   1e-52 
ref|NP_791802.1|  flagellar biosynthesis sigma factor FliA [...   209   1e-52 
gb|EAI45231.1|  unknown [environmental sequence]                  208   2e-52 
ref|ZP_01616651.1|  RNA polymerase sigma factor for flagella...   208   2e-52 
ref|ZP_00695535.1|  COG1191: DNA-directed RNA polymerase spe...   208   2e-52 
ref|ZP_01075364.1|  flagellar biosynthesis sigma factor FliA...   208   2e-52 
ref|YP_347295.1|  flagellar biosynthesis sigma factor FliA [...   207   3e-52 
ref|ZP_00581285.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   207   3e-52 
ref|ZP_01110511.1|  flagellar biosynthesis sigma factor FliA...   207   4e-52 
emb|CAJ49277.1|  RNA polymerase sigma factor for flagellar o...   207   5e-52 
ref|YP_314938.1|  RNA polymerase sigma-70 factor [Thiobacill...   207   5e-52 
gb|AAC08061.1|  FliA [Pseudomonas putida]                         207   5e-52 
ref|NP_718765.1|  flagellar biosynthesis sigma factor FliA [...   207   5e-52 
ref|YP_733435.1|  RNA polymerase, sigma 28 subunit [Shewanel...   207   5e-52 
ref|ZP_01540210.1|  RNA polymerase, sigma 28 subunit [Shewan...   206   6e-52 
ref|ZP_01235752.1|  flagellar biosynthesis sigma factor FliA...   206   6e-52 
ref|YP_868999.1|  RNA polymerase, sigma 28 subunit [Shewanel...   206   6e-52 
ref|NP_746456.1|  flagellar biosynthesis sigma factor FliA [...   206   6e-52 
ref|YP_205217.1|  flagellar biosynthesis sigma factor FliA [...   206   8e-52 
ref|ZP_01638188.1|  RNA polymerase, sigma 28 subunit [Pseudo...   206   1e-51 
ref|ZP_01258827.1|  flagellar biosynthesis sigma factor [Vib...   206   1e-51 
ref|ZP_01128458.1|  flagellar biosynthesis sigma factor FliA...   205   2e-51 
ref|ZP_01597351.1|  RNA polymerase, sigma 28 subunit [Marino...   204   2e-51 
gb|AAF67044.1|AF183382_4  motility sigma factor FliA [Pseudo...   204   2e-51 
ref|YP_662590.1|  RNA polymerase, sigma 28 subunit [Pseudoal...   204   2e-51 
ref|ZP_01601726.1|  RNA polymerase, sigma 28 subunit, FliA/W...   204   3e-51 
ref|YP_299808.1|  Sigma-70 region 4 [Ralstonia eutropha JMP1...   204   3e-51 
ref|ZP_01475910.1|  hypothetical protein VEx2w_02001562 [Vib...   204   3e-51 
ref|YP_749890.1|  RNA polymerase, sigma 28 subunit [Shewanel...   204   3e-51 
gb|EAG65470.1|  unknown [environmental sequence]                  203   5e-51 
ref|YP_995725.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   203   5e-51 
ref|ZP_01132733.1|  flagellar biosynthesis sigma factor FliA...   203   5e-51 
ref|ZP_01159953.1|  flagellar biosynthesis sigma factor FliA...   202   9e-51 
ref|YP_728422.1|  DNA-directed RNA polymerase sigma subunit ...   202   1e-50 
gb|AAF32414.1|  flagellar-specific RNA polymerase sigma fact...   202   1e-50 
ref|NP_760825.1|  flagellar biosynthesis sigma factor FliA [...   202   1e-50 
ref|NP_935257.1|  flagellar biosynthesis sigma factor FliA [...   202   1e-50 
ref|NP_798611.1|  flagellar biosynthesis sigma factor FliA [...   202   1e-50 
ref|YP_268261.1|  flagellar biosynthesis sigma factor FliA [...   201   2e-50 
ref|YP_855921.1|  RNA polymerase sigma factor for flagellar ...   201   3e-50 
gb|AAZ95856.1|  FliA [Aeromonas hydrophila]                       200   5e-50 
ref|NP_970067.1|  RNA polymerase sigma factor for flagellar ...   200   6e-50 
ref|ZP_01064445.1|  flagellar biosynthesis sigma factor FliA...   200   6e-50 
ref|ZP_00991024.1|  flagellar biosynthesis sigma factor FliA...   200   6e-50 
ref|NP_642259.1|  RNA polymerase sigma factor [Xanthomonas a...   199   8e-50 
ref|YP_363708.1|  RNA polymerase sigma factor for flagellar ...   199   8e-50 
ref|NP_637271.1|  RNA polymerase sigma factor [Xanthomonas c...   199   1e-49 
ref|YP_201260.1|  RNA polymerase sigma factor FliA [Xanthomo...   199   1e-49 
ref|YP_741828.1|  RNA polymerase, sigma 28 subunit [Alkalili...   199   1e-49 
ref|YP_972730.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   199   1e-49 
ref|ZP_01114565.1|  flagellar biosynthesis sigma factor FliA...   199   1e-49 
gb|EAH05849.1|  unknown [environmental sequence]                  197   5e-49 
ref|YP_095808.1|  flagellar biosynthesis sigma factor FliA [...   197   5e-49 
ref|YP_127084.1|  flagellar biosynthesis sigma factor FliA [...   196   7e-49 
emb|CAA67397.1|  signma factor 28 [Legionella pneumophila st...   196   7e-49 
ref|YP_866934.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   196   1e-48 
ref|YP_383397.1|  sigma 28 (Flagella/Sporulation) [Geobacter...   195   1e-48 
ref|YP_124064.1|  flagellar biosynthesis sigma factor FliA [...   195   1e-48 
ref|YP_527636.1|  Flagellar protein FliS [Saccharophagus deg...   194   3e-48 
ref|YP_344145.1|  Sigma28 (Flagella) [Nitrosococcus oceani A...   194   3e-48 
gb|EAY39492.1|  RNA polymerase sigma factor for flagellar op...   193   6e-48 
ref|ZP_01612808.1|  flagellar biosynthesis sigma factor [Alt...   193   6e-48 
ref|NP_231698.1|  flagellar biosynthesis sigma factor FliA [...   193   6e-48 
ref|YP_339333.1|  flagellar biosynthesis sigma factor FliA [...   192   9e-48 
ref|NP_954095.1|  RNA polymerase sigma factor for flagellar ...   191   3e-47 
ref|ZP_01043338.1|  flagellar biosynthesis sigma factor FliA...   191   3e-47 
ref|ZP_01644613.1|  RNA polymerase, sigma 28 subunit [Stenot...   191   4e-47 
ref|ZP_01214994.1|  flagellar biosynthesis sigma factor FliA...   190   5e-47 
ref|NP_712784.1|  sigma factor WhiG [Leptospira interrogans ...   190   5e-47 
ref|YP_798210.1|  RNA polymerase sigma subunit [Leptospira b...   190   6e-47 
ref|ZP_01625765.1|  flagellar biosynthesis sigma factor FliA...   189   1e-46 
ref|YP_155506.1|  flagellar biosynthesis sigma factor FliA [...   187   4e-46 
ref|NP_973281.1|  sigma factor WhiG [Treponema denticola ATC...   187   5e-46 
ref|ZP_01101984.1|  RNA polymerase sigma factor for flagella...   187   5e-46 
ref|ZP_01388143.1|  RNA polymerase sigma factor, FliA/WhiG [...   186   7e-46 
ref|ZP_01139767.1|  Sigma-70 factor [Geobacter uraniumreduce...   184   3e-45 
gb|EAE81131.1|  unknown [environmental sequence]                  184   3e-45 
ref|ZP_01575373.1|  RNA polymerase, sigma 28 subunit [Clostr...   183   6e-45 
ref|ZP_01287839.1|  Sigma-70-like protein [delta proteobacte...   182   1e-44 
ref|ZP_01093286.1|  RNA polymerase sigma factor whiG [Blasto...   181   2e-44 
ref|ZP_01447974.1|  flagellar biosynthesis sigma factor [alp...   181   4e-44 
gb|AAC36891.1|  minor sigma-like factor >gi|743686|prf||2013...   181   4e-44 
ref|NP_219146.1|  sigma factor WhiG [Treponema pallidum subs...   178   2e-43 
emb|CAA48660.1|  whiG-Stv [Streptomyces griseocarneus]            177   3e-43 
ref|YP_845510.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   177   4e-43 
gb|AAA26829.1|  sigma factor (whiG) (put. alt.) (gtg start c...   176   7e-43 
gb|AAB41960.1|  sporulation sigma factor                          176   7e-43 
ref|NP_629755.1|  sigma factor WhiG [Streptomyces coelicolor...   176   7e-43 
ref|ZP_00619413.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   176   7e-43 
gb|AAR90090.1|  WhiG-like protein [Streptomyces ambofaciens]      176   1e-42 
ref|NP_823806.1|  sigma factor WhiG [Streptomyces avermitili...   176   1e-42 
gb|EAH18040.1|  unknown [environmental sequence]                  174   3e-42 
ref|YP_461389.1|  RNA polymerase flagellar sigma factor [Syn...   173   6e-42 
ref|YP_873304.1|  RNA polymerase, sigma 28 subunit [Acidothe...   172   1e-41 
ref|ZP_01452567.1|  RNA polymerase sigma factor for flagella...   172   1e-41 
ref|YP_903097.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   172   1e-41 
ref|YP_590713.1|  sigma 28 [Acidobacteria bacterium Ellin345...   170   5e-41 
emb|CAJ73289.1|  strongly similar to RNA polymerase sigma fa...   169   9e-41 
ref|ZP_00884294.1|  Sigma-70 factor [Caldicellulosiruptor sa...   169   9e-41 
gb|EAY39580.1|  RNA polymerase sigma factor for flagellar op...   169   1e-40 
ref|ZP_01148572.1|  Sigma-70 factor [Desulfotomaculum reduce...   169   1e-40 
ref|YP_012439.1|  RNA polymerase sigma factor for flagellar ...   169   1e-40 
ref|YP_753567.1|  putative RNA polymerase sigma factor [Synt...   168   2e-40 
ref|ZP_01665560.1|  RNA polymerase, sigma 28 subunit, FliA/W...   167   4e-40 
ref|ZP_01361730.1|  RNA polymerase sigma factor, FliA/WhiG [...   167   4e-40 
gb|EAJ61651.1|  unknown [environmental sequence]                  167   6e-40 
ref|NP_868296.1|  RNA polymerase sigma factor whiG [Rhodopir...   167   6e-40 
ref|YP_922321.1|  RNA polymerase sigma factor, FliA/WhiG fam...   166   7e-40 
ref|ZP_01352449.1|  RNA polymerase sigma factor, FliA/WhiG [...   166   1e-39 
ref|NP_389529.1|  sigma factor SigD [Bacillus subtilis subsp...   166   1e-39 
ref|ZP_00778807.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   166   1e-39 
ref|ZP_01592440.1|  RNA polymerase, sigma 28 subunit [Geobac...   165   2e-39 
ref|YP_519200.1|  hypothetical protein DSY2967 [Desulfitobac...   164   3e-39 
ref|ZP_01369947.1|  RNA polymerase, sigma 28 subunit [Desulf...   164   3e-39 
gb|EAD65634.1|  unknown [environmental sequence]                  164   5e-39 
ref|YP_079041.1|  sigma factor SigD [Bacillus licheniformis ...   164   5e-39 
dbj|GAA00802.1|  unnamed protein product [Pelotomaculum ther...   163   6e-39 
ref|NP_623031.1|  DNA-directed RNA polymerase specialized si...   163   6e-39 
ref|ZP_00801367.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   163   6e-39 
gb|EAJ32075.1|  unknown [environmental sequence]                  163   8e-39 
ref|YP_386879.1|  Sigma-70 factor [Desulfovibrio desulfurica...   162   1e-38 
gb|EAF72047.1|  unknown [environmental sequence]                  161   3e-38 
ref|YP_644171.1|  RNA polymerase, sigma 28 subunit [Rubrobac...   161   3e-38 
ref|YP_429655.1|  sigma 28 (Flagella/Sporulation) [Moorella ...   159   9e-38 
ref|NP_243297.1|  sigma factor SigD [Bacillus halodurans C-1...   158   3e-37 
gb|EAG78876.1|  unknown [environmental sequence]                  156   8e-37 
ref|YP_828660.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   156   1e-36 
ref|ZP_01312612.1|  RNA polymerase, sigma 28 subunit [Desulf...   155   1e-36 
ref|YP_147099.1|  sigma factor SigD [Geobacillus kaustophilu...   155   2e-36 
emb|CAD65853.1|  Flagellin A [Escherichia coli] >gi|54261993...   154   3e-36 
gb|EAK15362.1|  unknown [environmental sequence]                  154   5e-36 
gb|EAG30956.1|  unknown [environmental sequence]                  152   1e-35 
gb|AAO38358.1|  Lfe160p1 [Leptospirillum ferrooxidans]            152   1e-35 
ref|ZP_00814809.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   152   2e-35 
ref|ZP_01171497.1|  sigma factor SigD [Bacillus sp. NRRL B-1...   151   3e-35 
ref|ZP_01223267.1|  flagellar biosynthesis sigma factor FliA...   150   5e-35 
gb|AAB41955.1|  whiG [Streptomyces sp.]                           150   7e-35 
ref|ZP_00580277.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   149   9e-35 
gb|EAD55338.1|  unknown [environmental sequence]                  149   1e-34 
gb|AAN04223.1|  LafS [Aeromonas salmonicida]                      149   1e-34 
ref|ZP_00539974.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   149   2e-34 
gb|EAC15375.1|  unknown [environmental sequence]                  148   3e-34 
ref|YP_356578.1|  flagellar biosynthesis protein, alternativ...   147   5e-34 
ref|ZP_01522940.1|  RNA polymerase, sigma 28 subunit [Fervid...   146   8e-34 
ref|YP_827418.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...   145   1e-33 
ref|ZP_01603238.1|  RNA polymerase, sigma 28 subunit, FliA/W...   144   3e-33 
ref|ZP_01189720.1|  Sigma-70 region 4 [Halothermothrix oreni...   144   4e-33 
ref|NP_296710.1|  sigma-28 factor [Chlamydia muridarum Nigg]...   144   5e-33 
gb|AAK20925.1|  RNA polymerase sigma factor [Aeromonas hydro...   144   5e-33 
gb|EAY43086.1|  RNA polymerase, sigma 28 subunit [Bacillus c...   142   1e-32 
ref|YP_564631.1|  RNA polymerase sigma factor, FliA/WhiG [Sh...   142   1e-32 
ref|NP_224562.1|  sigma-28 factor [Chlamydophila pneumoniae ...   142   2e-32 
ref|YP_438382.1|  RNA polymerase sigma factor for flagellar ...   141   3e-32 
ref|ZP_00504780.1|  Sigma-70 region 3:Sigma-70 region 2 [Clo...   141   3e-32 
ref|ZP_00983413.1|  COG1191: DNA-directed RNA polymerase spe...   140   6e-32 
ref|NP_219564.1|  sigma-28 factor [Chlamydia trachomatis D/U...   140   7e-32 
ref|ZP_00695536.1|  COG1191: DNA-directed RNA polymerase spe...   140   7e-32 
gb|EAE00962.1|  unknown [environmental sequence]                  139   1e-31 
ref|ZP_01653690.1|  RNA polymerase, sigma 28 subunit [Thermo...   139   2e-31 
ref|NP_213832.1|  RNA polymerase sigma factor FliA [Aquifex ...   139   2e-31 
pdb|1RP3|A  Chain A, Cocrystal Structure Of The Flagellar Si...   139   2e-31 
ref|NP_348761.1|  Sigma factor of SigD/WhiG family [Clostrid...   138   2e-31 
ref|YP_175740.1|  sigma factor SigD [Bacillus clausii KSM-K1...   138   3e-31 
ref|NP_782256.1|  RNA polymerase sigma factor for flagellar ...   137   6e-31 
ref|YP_066414.1|  similar to RNA polymerase sigma factor (Fl...   137   6e-31 
ref|ZP_00907577.1|  Sigma-70 factor [Clostridium beijerincki...   137   6e-31 
ref|ZP_00489100.1|  COG1191: DNA-directed RNA polymerase spe...   137   6e-31 
gb|EAC89974.1|  unknown [environmental sequence]                  136   1e-30 
ref|ZP_01302003.1|  flagellar-specific RNA polymerase sigma ...   135   1e-30 
ref|NP_829297.1|  sigma-28 factor [Chlamydophila caviae GPIC...   135   1e-30 
ref|NP_692503.1|  sigma factor SigD [Oceanobacillus iheyensi...   135   2e-30 
gb|AAD19735.1|  sigma-F factor [Zymomonas mobilis]                135   2e-30 
ref|YP_162361.1|  flagellar-specific RNA polymerase sigma fa...   135   2e-30 
ref|YP_359860.1|  RNA polymerase sigma factor for flagellar ...   134   3e-30 
ref|YP_076811.1|  RNA polymerase sigma factor related to fla...   134   4e-30 
ref|ZP_01002185.1|  sigma factor FliA (Sigma-28 group, flage...   134   4e-30 
gb|EAI33366.1|  unknown [environmental sequence]                  134   5e-30 
gb|EAJ98973.1|  unknown [environmental sequence]                  133   7e-30 
ref|YP_515496.1|  DNA-directed RNA polymerase sigma 28 [Chla...   132   1e-29 
ref|YP_219829.1|  sigma-28 factor [Chlamydophila abortus S26...   132   1e-29 
ref|ZP_01476133.1|  hypothetical protein VEx2w_02001333 [Vib...   132   2e-29 
ref|ZP_01258458.1|  flagellar-specific transcription initiat...   131   3e-29 
ref|YP_464566.1|  sigma 28 (flagella/Sporulation) [Anaeromyx...   130   4e-29 
ref|YP_128304.1|  Hypothetical flagellar-specific transcript...   130   4e-29 
ref|ZP_00368717.1|  alternative transcription initiation fac...   130   6e-29 
gb|EAK02601.1|  unknown [environmental sequence]                  130   8e-29 
ref|NP_801065.1|  flagellar-specific transcription initiatio...   129   1e-28 
ref|NP_404376.1|  flagellar biosynthesis sigma factor FliA [...   129   1e-28 
ref|ZP_00367874.1|  probable RNA polymerase sigma factor for...   129   1e-28 
ref|ZP_01233173.1|  flagellar-specific transcription initiat...   129   2e-28 
ref|NP_902660.1|  flagellar biosynthesis sigma factor FliA [...   129   2e-28 
ref|ZP_01158875.1|  flagellar-specific transcription initiat...   129   2e-28 
ref|YP_921979.1|  RNA polymerase sigma factor, FliA/WhiG fam...   128   3e-28 
ref|ZP_00618834.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   128   3e-28 
ref|YP_353102.1|  sigma factor FliA (Sigma-28 group, flagell...   128   3e-28 
ref|YP_001019247.1|  RNA polymerase sigma factor for flagell...   127   6e-28 
ref|ZP_01636746.1|  hypothetical protein CdifQ_03000307 [Clo...   127   6e-28 
ref|YP_071811.1|  flagellar biosynthesis sigma factor FliA [...   126   8e-28 
ref|ZP_01495499.1|  hypothetical protein YpseI_02000607 [Yer...   126   8e-28 
ref|YP_921565.1|  RNA polymerase sigma factor, FliA/WhiG fam...   126   8e-28 
ref|YP_877996.1|  RNA polymerase sigma factor for flagellar ...   126   1e-27 
ref|ZP_01525254.1|  RNA polymerase, sigma 28 subunit [Pseudo...   126   1e-27 
emb|CAJ67088.1|  RNA polymerase sigma factor for flagellar o...   126   1e-27 
gb|EAG12125.1|  unknown [environmental sequence]                  125   2e-27 
ref|NP_228710.1|  RNA polymerase sigma-28 factor, putative [...   125   2e-27 
ref|ZP_00735975.1|  COG1191: DNA-directed RNA polymerase spe...   125   2e-27 
ref|ZP_01652240.1|  RNA polymerase sigma factor, FliA/WhiG f...   124   5e-27 
ref|ZP_01605985.1|  RNA polymerase, sigma 28 subunit, FliA/W...   124   5e-27 
emb|CAH19154.1|  Lateral flagellar sigma factor 28 protein (...   124   5e-27 
ref|ZP_00915001.1|  Sigma-70 factor [Rhodobacter sphaeroides...   124   5e-27 
ref|ZP_01566828.1|  RNA polymerase, sigma 28 subunit [Burkho...   123   7e-27 
ref|NP_281276.1|  flagellar biosynthesis sigma factor FliA [...   123   7e-27 
ref|YP_178083.1|  flagellar biosynthesis sigma factor FliA [...   123   7e-27 
ref|ZP_01377891.1|  hypothetical protein Cjejd_01001345 [Cam...   123   9e-27 
ref|NP_907770.1|  flagellar biosynthesis sigma factor FliA [...   122   2e-26 
gb|AAY87290.1|  predicted flagellar-specific RNA polymerase ...   122   2e-26 
ref|YP_892645.1|  flagellar biosynthesis sigma factor FliA [...   120   6e-26 
ref|YP_498343.1|  sigma 28 (Flagella/Sporulation) [Novosphin...   120   8e-26 
ref|YP_921563.1|  sigma-70 region 4 domain protein [Nocardio...   120   8e-26 
ref|ZP_00369883.1|  alternative transcription initiation fac...   120   8e-26 
ref|NP_223111.1|  flagellar biosynthesis sigma factor FliA [...   119   1e-25 
ref|YP_873790.1|  RNA polymerase, sigma 28 subunit [Acidothe...   119   1e-25 
gb|EAD78386.1|  unknown [environmental sequence]                  119   1e-25 
gb|EAD29781.1|  unknown [environmental sequence]                  117   4e-25 
ref|NP_207822.1|  flagellar biosynthesis sigma factor FliA [...   117   5e-25 
ref|ZP_01041217.1|  flagellar-specific RNA polymerase sigma ...   116   9e-25 
ref|YP_664896.1|  putative RNA polymerase sigma factor for f...   115   1e-24 
ref|YP_627156.1|  alternative transcription initiation facto...   115   2e-24 
ref|YP_925634.1|  sigma-70 region 4 domain protein [Nocardio...   115   3e-24 
ref|ZP_01373378.1|  hypothetical protein Ccon1_01002007 [Cam...   114   3e-24 
gb|EAF45178.1|  unknown [environmental sequence]                  114   6e-24 
gb|EAB59557.1|  unknown [environmental sequence]                  113   7e-24 
gb|EAK02602.1|  unknown [environmental sequence]                  113   1e-23 
ref|YP_446679.1|  RNA polymerase sigma-28 factor [Salinibact...   112   2e-23 
gb|EAJ73603.1|  unknown [environmental sequence]                  111   4e-23 
ref|YP_617940.1|  RNA polymerase, sigma 28 subunit [Sphingop...   110   5e-23 
gb|EAE26846.1|  unknown [environmental sequence]                  105   3e-21 
ref|YP_393220.1|  sigma 28 (Flagella/Sporulation) [Thiomicro...   103   6e-21 
gb|EAJ07152.1|  unknown [environmental sequence]                  102   2e-20 
ref|YP_118922.1|  putative sigma factor [Nocardia farcinica ...   101   4e-20 
ref|ZP_01193336.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...   100   6e-20 
gb|EAE63875.1|  unknown [environmental sequence]                  100   1e-19 
ref|YP_116363.1|  putative sigma factor [Nocardia farcinica ...    98   3e-19 
ref|YP_872323.1|  RNA polymerase, sigma 28 subunit [Acidothe...    98   4e-19 
ref|YP_906439.1|  alternate RNA polymerase sigma factor SigF...    97   9e-19 
ref|YP_630657.1|  RNA polymerase sigma factor, FliA/WhiG/Sig...    96   1e-18 
ref|ZP_01089377.1|  transcription initiation factor sigma 70...    96   1e-18 
ref|ZP_00616640.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    96   1e-18 
ref|YP_702083.1|  sigma factor, sigma 70 type, group 3 [Rhod...    95   3e-18 
dbj|BAC55891.1|  RNA polymerase sigma factor [Streptomyces g...    95   3e-18 
ref|YP_700092.1|  sigma factor, sigma 70 type, group 3 [Rhod...    95   4e-18 
ref|YP_119817.1|  putative sigma factor [Nocardia farcinica ...    94   5e-18 
ref|YP_118096.1|  putative sigma factor [Nocardia farcinica ...    94   5e-18 
gb|EAG21032.1|  unknown [environmental sequence]                   94   6e-18 
ref|YP_518537.1|  hypothetical protein DSY2304 [Desulfitobac...    94   6e-18 
ref|ZP_01369305.1|  RNA polymerase, sigma 28 subunit [Desulf...    94   6e-18 
ref|NP_217803.1|  sigma factor SigF [Mycobacterium tuberculo...    94   6e-18 
ref|ZP_01623269.1|  Sigma 32 (RpoH) [Lyngbya sp. PCC 8106] >...    94   8e-18 
ref|ZP_01280102.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    94   8e-18 
ref|YP_474076.1|  RNA polymerase sigma factor, group 3 [Syne...    94   8e-18 
ref|YP_478685.1|  RNA polymerase sigma factor, group 3 [Syne...    94   8e-18 
ref|YP_644584.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    94   8e-18 
ref|YP_644008.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    94   8e-18 
gb|AAC44103.1|  stress response/stationary phase sigma facto...    93   1e-17 
gb|EAD98928.1|  unknown [environmental sequence]                   92   2e-17 
ref|ZP_01427652.1|  sigma-70 region 3 [Herpetosiphon auranti...    92   2e-17 
ref|NP_860677.1|  flagellar biosynthesis sigma factor FliA [...    92   2e-17 
gb|EAK58801.1|  unknown [environmental sequence]                   92   2e-17 
ref|NP_962340.1|  sigma factor SigF [Mycobacterium avium sub...    92   2e-17 
ref|NP_241395.1|  sigma factor B [Bacillus halodurans C-125]...    92   2e-17 
ref|YP_922915.1|  sigma-70 region 2 domain protein [Nocardio...    92   2e-17 
gb|EAF58680.1|  unknown [environmental sequence]                   92   3e-17 
ref|YP_883398.1|  RNA polymerase sigma-F factor [Mycobacteri...    92   3e-17 
ref|NP_824189.1|  RNA polymerase sigma factor, sigH [Strepto...    92   3e-17 
ref|YP_849078.1|  RNA polymerase sigma-37 (sigma-B) [Listeri...    91   4e-17 
gb|AAN16085.1|  SigB [Listeria welshimeri]                         91   4e-17 
gb|AAN16086.1|  SigB [Listeria welshimeri]                         91   4e-17 
ref|YP_446059.1|  RNA polymerase sigma-70 factor [Salinibact...    91   4e-17 
ref|YP_082499.1|  sigma factor B [Bacillus cereus E33L] >gi|...    91   5e-17 
gb|EAB65742.1|  unknown [environmental sequence]                   91   7e-17 
ref|YP_716132.1|  SigH putative RNA polymerase sigma factor ...    91   7e-17 
ref|YP_886176.1|  RNA polymerase sigma-F factor [Mycobacteri...    91   7e-17 
ref|YP_952495.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...    90   9e-17 
gb|AAN06627.1|AF497199_1  sigma factor B [Listeria monocytog...    90   9e-17 
gb|AAC34827.1|  RNA polymerase sigma B [Listeria monocytogenes]    90   9e-17 
ref|NP_865687.1|  RNA polymerase sigma factor rpoS [Rhodopir...    90   9e-17 
ref|YP_013516.1|  sigma factor B [Listeria monocytogenes str...    90   9e-17 
gb|AAN16082.1|  SigB [Listeria ivanovii] >gi|30266011|gb|AAN...    90   1e-16 
gb|AAN16080.1|  SigB [Listeria seeligeri] >gi|30266007|gb|AA...    90   1e-16 
gb|AAN06630.1|AF497202_1  sigma factor B [Listeria monocytog...    90   1e-16 
gb|AAC38793.1|  Sigma B [Listeria innocua]                         90   1e-16 
ref|YP_289395.1|  RNA polymerase sigma factor [Thermobifida ...    90   1e-16 
ref|NP_470235.1|  sigma factor B [Listeria innocua Clip11262...    90   1e-16 
ref|ZP_01193337.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    90   1e-16 
ref|NP_464421.1|  sigma factor B [Listeria monocytogenes EGD...    90   1e-16 
ref|YP_893765.1|  RNA polymerase sigma-B factor [Bacillus th...    89   1e-16 
ref|YP_061685.1|  RNA polymerase, sigma factor [Leifsonia xy...    89   1e-16 
ref|YP_035252.1|  sigma factor B [Bacillus thuringiensis ser...    89   1e-16 
ref|YP_027202.1|  sigma factor B [Bacillus anthracis str. St...    89   1e-16 
gb|AAD49326.1|AF162936_2  RNA polymerase alternative sigma f...    89   1e-16 
ref|YP_173205.1|  sigma factor SigF [Synechococcus elongatus...    89   1e-16 
ref|NP_629389.1|  RNA polymerase sigma factor [Streptomyces ...    89   1e-16 
ref|NP_843493.1|  sigma factor B [Bacillus anthracis str. Am...    89   1e-16 
gb|EAB89045.1|  unknown [environmental sequence]                   89   2e-16 
ref|YP_482835.1|  sigma 28 subunit [Frankia sp. CcI3] >gi|86...    89   2e-16 
ref|NP_824667.1|  RNA polymerase sigma factor [Streptomyces ...    89   3e-16 
ref|NP_623670.1|  DNA-directed RNA polymerase sigma subunits...    89   3e-16 
ref|NP_867481.1|  transcription initiation factor sigma 70 [...    89   3e-16 
ref|NP_441077.1|  RNA polymerase sigma factor [Synechocystis...    89   3e-16 
ref|ZP_01185788.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    88   3e-16 
ref|ZP_01514985.1|  RNA polymerase sigma factor RpoD-like [C...    88   4e-16 
ref|YP_149277.1|  DNA-directed RNA polymerase sigma-37 facto...    88   4e-16 
ref|YP_120014.1|  putative sigma factor [Nocardia farcinica ...    88   4e-16 
sp|P06574|RPSB_BACSU  RNA polymerase sigma-B factor (Sigma-3...    88   4e-16 
ref|NP_388354.1|  sigma factor B [Bacillus subtilis subsp. s...    88   4e-16 
ref|ZP_00767982.1|  Sigma-70 region 1.2 [Chloroflexus aurant...    88   4e-16 
gb|EAH92226.1|  unknown [environmental sequence]                   87   6e-16 
ref|YP_953348.1|  RNA polymerase, sigma 28 subunit, FliA/Whi...    87   6e-16 
gb|ABL76111.1|  SigB [Listeria monocytogenes] >gi|119514600|...    87   6e-16 
ref|ZP_01202323.1|  DNA-directed RNA polymerase major sigma-...    87   6e-16 
gb|ABC16653.1|  major sigma factor RpoD [Acidobacterium caps...    87   6e-16 
gb|AAN06633.1|AF497205_1  sigma factor B [Listeria monocytog...    87   6e-16 
gb|AAN06628.1|AF497200_1  sigma factor B [Listeria monocytog...    87   6e-16 
ref|ZP_00571001.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    87   6e-16 
gb|EAK14979.1|  unknown [environmental sequence]                   87   7e-16 
gb|EAK09748.1|  unknown [environmental sequence]                   87   7e-16 
gb|EAJ77951.1|  unknown [environmental sequence]                   87   7e-16 
gb|EAF45378.1|  unknown [environmental sequence]                   87   7e-16 
gb|ABI29096.1|  RNA polymerase sigma-B factor [Listeria mono...    87   7e-16 
gb|ABL76113.1|  SigB [Listeria monocytogenes] >gi|119514606|...    87   7e-16 
ref|NP_977409.1|  sigma factor B [Bacillus cereus ATCC 10987...    87   7e-16 
dbj|BAD15074.1|  RNA polymerase alternative sigma factor [Sa...    87   7e-16 
ref|ZP_01190809.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    87   7e-16 
ref|ZP_00236004.1|  sigma-B [Bacillus cereus G9241] >gi|4755...    87   7e-16 
gb|AAC79983.1|  HasR [Streptomyces ambofaciens] >gi|11716481...    87   1e-15 
ref|NP_628217.1|  RNA polymerase sigma factor [Streptomyces ...    87   1e-15 
ref|ZP_01122314.1|  putative sigma factor A [Robiginitalea b...    87   1e-15 
ref|ZP_01051229.1|  putative sigma factor A [Cellulophaga sp...    87   1e-15 
ref|YP_860432.1|  RNA polymerase sigma-70 factor [Gramella f...    86   1e-15 
ref|ZP_01373385.1|  hypothetical protein Ccon1_01001995 [Cam...    86   1e-15 
gb|AAC79984.2|  HasL [Streptomyces ambofaciens]                    86   1e-15 
ref|NP_830790.1|  sigma factor B [Bacillus cereus ATCC 14579...    86   1e-15 
gb|AAB07554.1|  SigD [Chloroflexus aurantiacus]                    86   1e-15 
ref|ZP_01142202.1|  Sigma-70 factor [Geobacter uraniumreduce...    86   1e-15 
ref|YP_704671.1|  sigma factor, sigma 70 type, group 3 [Rhod...    86   2e-15 
ref|YP_644133.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    86   2e-15 
ref|ZP_01107233.1|  putative sigma factor A [Flavobacteriale...    86   2e-15 
ref|ZP_00112414.1|  COG0568: DNA-directed RNA polymerase, si...    86   2e-15 
ref|ZP_01691051.1|  RpoD [Microscilla marina ATCC 23134] >gi...    86   2e-15 
ref|ZP_01531537.1|  RNA polymerase, sigma 28 subunit [Roseif...    86   2e-15 
gb|AAT58808.1|  hypothetical protein [Oryza sativa (japonica...    86   2e-15 
gb|AAT37999.1|  putative RNA polymerase sigma factor [Oryza ...    86   2e-15 
ref|NP_825362.1|  RNA polymerase sigma factor [Streptomyces ...    86   2e-15 
ref|YP_288620.1|  RNA polymerase sigma factor [Thermobifida ...    86   2e-15 
ref|ZP_01116970.1|  putative sigma factor A [Polaribacter ir...    86   2e-15 
ref|ZP_00741618.1|  RNA polymerase sigma-B factor [Bacillus ...    86   2e-15 
ref|ZP_01516841.1|  sigma-70 region 3 [Chloroflexus aggregan...    85   3e-15 
ref|ZP_01453336.1|  RNA polymerase sigma factor [Mariprofund...    85   3e-15 
emb|CAB55833.1|  SigJ protein [Streptomyces coelicolor A3(2)]      85   3e-15 
gb|AAB07552.1|  SigB [Chloroflexus aurantiacus]                    85   3e-15 
ref|NP_624912.1|  RNA polymerase sigma factor sig8 [Streptom...    85   3e-15 
ref|ZP_00769044.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    85   3e-15 
gb|EAJ36537.1|  unknown [environmental sequence]                   85   4e-15 
ref|ZP_01389512.1|  RNA polymerase sigma factor RpoD-like [G...    85   4e-15 
ref|YP_593370.1|  sigma 38, RpoS [Acidobacteria bacterium El...    85   4e-15 
ref|NP_822262.1|  RNA polymerase sigma factor [Streptomyces ...    85   4e-15 
ref|YP_321717.1|  Sigma 28 (Flagella/Sporulation) [Anabaena ...    85   4e-15 
ref|YP_383363.1|  RNA polymerase sigma factor RpoD-like [Geo...    85   4e-15 
gb|AAB07551.1|  SigA [Chloroflexus aurantiacus]                    85   4e-15 
ref|NP_488289.1|  group 2 sigma 70-type sigma factor F [Nost...    85   4e-15 
ref|NP_441950.1|  RNA polymerase sigma factor [Synechocystis...    85   4e-15 
ref|ZP_01121178.1|  putative sigma factor A [Robiginitalea b...    85   4e-15 
ref|ZP_01053960.1|  putative sigma factor A [Tenacibaculum s...    85   4e-15 
ref|ZP_00540597.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    85   4e-15 
ref|ZP_01629125.1|  group 2 sigma 70-type sigma factor F [No...    84   5e-15 
ref|NP_954130.1|  RNA polymerase sigma factor RpoD [Geobacte...    84   5e-15 
ref|NP_926708.1|  RNA polymerase sigma-like factor [Gloeobac...    84   5e-15 
sp|P37970|RPOF_STRAU  RNA polymerase sigma-F factor >gi|1534...    84   5e-15 
ref|NP_627288.1|  RNA polymerase sigma factor [Streptomyces ...    84   5e-15 
ref|ZP_00951144.1|  RNA polymerase sigma factor rpoD (Sigma-...    84   5e-15 
ref|ZP_00886592.1|  Sigma-70 factor [Caldicellulosiruptor sa...    84   5e-15 
ref|YP_678394.1|  RNA polymerase sigma-70 factor [Cytophaga ...    84   5e-15 
gb|EAH21128.1|  unknown [environmental sequence]                   84   6e-15 
gb|EAC82276.1|  unknown [environmental sequence]                   84   6e-15 
ref|ZP_01376088.1|  hypothetical protein Ccur5_01001148 [Cam...    84   6e-15 
ref|ZP_01356488.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    84   6e-15 
gb|AAD11814.1|  sigma-like factor [Streptomyces sp. A21]           84   6e-15 
ref|YP_359316.1|  RNA polymerase sigma factor [Carboxydother...    84   6e-15 
ref|ZP_01106611.1|  RNA polymerase sigma factor rpoD (Sigma-...    84   6e-15 
ref|ZP_01311744.1|  RNA polymerase, sigma 38 subunit, RpoS [...    84   6e-15 
ref|ZP_01243764.1|  Sigma-70 [Flavobacterium johnsoniae UW10...    84   6e-15 
ref|ZP_00371317.1|  RNA polymerase sigma factor RpoD [Campyl...    84   6e-15 
gb|EAK09913.1|  unknown [environmental sequence]                   84   8e-15 
ref|ZP_01623816.1|  RNA polymerase sigma factor [Lyngbya sp....    84   8e-15 
ref|ZP_01532820.1|  RNA polymerase, sigma 28 subunit [Roseif...    84   8e-15 
ref|YP_096370.1|  RNA polymerase sigma 70 factor (RpoD) [Leg...    84   8e-15 
gb|AAB09543.1|  LprpoD                                             84   8e-15 
ref|YP_124621.1|  RNA polymerase sigma factor rpoD (Sigma-70...    84   8e-15 
ref|YP_127618.1|  RNA polymerase sigma factor rpoD (Sigma-70...    84   8e-15 
ref|YP_075051.1|  sporulation sigma factor SigG [Symbiobacte...    84   8e-15 
ref|ZP_01514670.1|  sigma-70 region 3 [Chloroflexus aggregan...    83   1e-14 
ref|YP_475797.1|  RNA polymerase sigma factor RpoD [Synechoc...    83   1e-14 
gb|AAB95227.1|  sigma factor [Synechococcus sp.]                   83   1e-14 
ref|YP_643658.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    83   1e-14 
ref|ZP_00767789.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    83   1e-14 
ref|YP_721682.1|  RNA polymerase, sigma 28 subunit [Trichode...    83   1e-14 
gb|EAI52661.1|  unknown [environmental sequence]                   83   1e-14 
gb|EAD18781.1|  unknown [environmental sequence]                   83   1e-14 
ref|ZP_01378574.1|  hypothetical protein Cjejd_01000858 [Cam...    83   1e-14 
ref|ZP_01359137.1|  RNA polymerase sigma factor RpoD-like [R...    83   1e-14 
ref|YP_090209.1|  sigma factor B [Bacillus licheniformis ATC...    83   1e-14 
ref|YP_077799.1|  sigma factor B [Bacillus licheniformis ATC...    83   1e-14 
sp|P35145|RPSF_BACME  RNA polymerase sigma-F factor (Stage I...    83   1e-14 
ref|YP_643941.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    83   1e-14 
gb|EAH96584.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAD09132.1|  unknown [environmental sequence]                   82   2e-14 
gb|EAE30713.1|  unknown [environmental sequence]                   82   2e-14 
ref|ZP_01593690.1|  RNA polymerase, sigma 38 subunit, RpoS [...    82   2e-14 
ref|ZP_01361813.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    82   2e-14 
ref|ZP_01280633.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    82   2e-14 
ref|ZP_01633929.1|  hypothetical protein CdifQ_03003091 [Clo...    82   2e-14 
ref|NP_821916.1|  RNA polymerase sigma factor [Streptomyces ...    82   2e-14 
ref|YP_148161.1|  sporulation sigma factor SigF [Geobacillus...    82   2e-14 
dbj|BAB87263.1|  RNA polymerase sigma factor [Cyanophora par...    82   2e-14 
dbj|BAA13122.1|  RpoD2 sigma factor [Microcystis aeruginosa]       82   2e-14 
dbj|BAA11832.1|  chloroplast RNA polymerase sigma subunit [C...    82   2e-14 
ref|ZP_00950915.1|  putative sigma factor A [Croceibacter at...    82   2e-14 
gb|EAF68306.1|  unknown [environmental sequence]                   82   2e-14 
ref|ZP_01621211.1|  RNA polymerase sigma-like factor [Lyngby...    82   2e-14 
emb|CAJ68363.1|  RNA polymerase sigma factor rpoD [Clostridi...    82   2e-14 
ref|YP_891711.1|  RNA polymerase sigma factor [Campylobacter...    82   2e-14 
dbj|GAA01789.1|  unnamed protein product [Pelotomaculum ther...    82   2e-14 
ref|ZP_01635244.1|  hypothetical protein CdifQ_03001693 [Clo...    82   2e-14 
emb|CAA05353.1|  sigma 70 [Campylobacter jejuni]                   82   2e-14 
gb|AAB41506.1|  SigA [Synechococcus sp. PCC 7002]                  82   2e-14 
ref|NP_214029.1|  RNA polymerase sigma factor RpoD [Aquifex ...    82   2e-14 
ref|NP_927305.1|  group2 RNA polymerase sigma factor [Gloeob...    82   2e-14 
prf||2208419B  RNA polymerase sigma factor                         82   2e-14 
ref|YP_179074.1|  RNA polymerase sigma factor [Campylobacter...    82   2e-14 
ref|ZP_00368381.1|  RNA polymerase sigma factor RpoD [Campyl...    82   2e-14 
ref|NP_282151.1|  RNA polymerase sigma factor [Campylobacter...    82   2e-14 
gb|EAJ53429.1|  unknown [environmental sequence]                   82   3e-14 
gb|EAC64698.1|  unknown [environmental sequence]                   82   3e-14 
gb|EAE91420.1|  unknown [environmental sequence]                   82   3e-14 
ref|YP_822080.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    82   3e-14 
gb|AAC29510.1|  sigma-B general stress transcription factor ...    82   3e-14 
ref|ZP_00367997.1|  RNA polymerase sigma factor RpoD [Campyl...    82   3e-14 
gb|EAI96945.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAI45309.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAH84843.1|  unknown [environmental sequence]                   81   4e-14 
gb|EAH03337.1|  unknown [environmental sequence]                   81   4e-14 
ref|YP_001016745.1|  Putative principal RNA polymerase sigma...    81   4e-14 
ref|YP_001009878.1|  Type II alternative RNA polymerase sigm...    81   4e-14 
ref|YP_001011764.1|  Type II alternative RNA polymerase sigm...    81   4e-14 
ref|YP_732094.1|  RNA polymerase sigma factor [Synechococcus...    81   4e-14 
gb|AAA26473.1|  sigma factor                                       81   4e-14 
ref|NP_967247.1|  RNA polymerase sigma factor RpoD [Bdellovi...    81   4e-14 
ref|NP_895100.1|  RNA polymerase sigma factor [Prochlorococc...    81   4e-14 
ref|NP_893406.1|  Type II alternative RNA polymerase sigma f...    81   4e-14 
ref|NP_390226.1|  sporulation sigma factor SigF [Bacillus su...    81   4e-14 
ref|ZP_01061598.1|  putative sigma factor A [Flavobacterium ...    81   4e-14 
ref|ZP_01059845.1|  putative sigma factor A [Flavobacterium ...    81   4e-14 
ref|ZP_01048944.1|  RNA polymerase sigma-70 factor [Cellulop...    81   4e-14 
ref|YP_845339.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    81   4e-14 
gb|EAH33109.1|  unknown [environmental sequence]                   81   5e-14 
ref|YP_001012202.1|  Type II alternative RNA polymerase sigm...    81   5e-14 
ref|ZP_01462884.1|  sigma factor [Stigmatella aurantiaca DW4...    81   5e-14 
ref|ZP_01348059.1|  hypothetical protein RcanM_01001049 [Ric...    81   5e-14 
ref|ZP_01253344.1|  RNA polymerase sigma factor rpoD (Sigma-...    81   5e-14 
emb|CAG28933.1|  Sigma F [Bacillus amyloliquefaciens FZB42]        81   5e-14 
ref|YP_067783.1|  RNA polymerase sigma factor [Rickettsia ty...    81   5e-14 
ref|YP_247373.1|  RNA polymerase sigma factor [Rickettsia fe...    81   5e-14 
ref|NP_810224.1|  RNA polymerase sigma factor rpoD (Sigma-A)...    81   5e-14 
dbj|BAC75679.1|  sigma F [Streptomyces griseus]                    81   5e-14 
ref|NP_360966.1|  RNA polymerase sigma factor [Rickettsia co...    81   5e-14 
ref|YP_633357.1|  RNA polymerase sigma factor RpoD [Myxococc...    81   5e-14 
ref|NP_221206.1|  RNA polymerase sigma factor [Rickettsia pr...    81   5e-14 
ref|ZP_00983264.1|  COG0568: DNA-directed RNA polymerase, si...    81   5e-14 
ref|ZP_00154270.2|  COG0568: DNA-directed RNA polymerase, si...    81   5e-14 
ref|YP_864730.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    81   5e-14 
ref|ZP_00142560.1|  RNA polymerase sigma factor [Rickettsia ...    81   5e-14 
gb|EAJ97764.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAH63693.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAH59287.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAG86364.1|  unknown [environmental sequence]                   80   7e-14 
gb|EAE26743.1|  unknown [environmental sequence]                   80   7e-14 
ref|YP_813134.1|  DNA-directed RNA polymerase, sigma subunit...    80   7e-14 
ref|YP_719447.1|  RNA polymerase sigma 70 factor [Haemophilu...    80   7e-14 
ref|ZP_01355590.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    80   7e-14 
ref|YP_619118.1|  RNA polymerase sigma factor [Lactobacillus...    80   7e-14 
ref|YP_487734.1|  sigma 70 (RpoD) [Rhodopseudomonas palustri...    80   7e-14 
gb|AAB81194.1|  sigma factor [Geobacillus stearothermophilus]      80   7e-14 
ref|YP_578094.1|  sigma 70 (RpoD) [Nitrobacter hamburgensis ...    80   7e-14 
ref|YP_554902.1|  Sigma 70 (RpoD) [Burkholderia xenovorans L...    80   7e-14 
gb|AAB81186.1|  sigma factor [Paenibacillus polymyxa]              80   7e-14 
ref|YP_319045.1|  RNA polymerase sigma factor [Nitrobacter w...    80   7e-14 
ref|YP_180196.1|  RNA polymerase sigma-70 factor [Ehrlichia ...    80   7e-14 
ref|NP_908000.1|  RNA polymerase sigma factor [Wolinella suc...    80   7e-14 
ref|NP_946639.1|  RNA polymerase sigma factor [Rhodopseudomo...    80   7e-14 
dbj|BAA04283.1|  sigma factor [Streptomyces setonii]               80   7e-14 
ref|ZP_01093411.1|  transcription initiation factor sigma 70...    80   7e-14 
ref|ZP_01046926.1|  RNA polymerase sigma factor [Nitrobacter...    80   7e-14 
ref|YP_779989.1|  RNA polymerase, sigma 70 subunit, RpoD [Rh...    80   7e-14 
ref|YP_571092.1|  RNA polymerase sigma factor RpoD-like [Rho...    80   7e-14 
ref|YP_822291.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    80   7e-14 
ref|ZP_00340903.1|  COG0568: DNA-directed RNA polymerase, si...    80   7e-14 
ref|ZP_00133133.2|  COG0568: DNA-directed RNA polymerase, si...    80   7e-14 
gb|EAK18566.1|  unknown [environmental sequence]                   80   9e-14 
gb|EAK10060.1|  unknown [environmental sequence]                   80   9e-14 
gb|EAI78095.1|  unknown [environmental sequence]                   80   9e-14 
gb|EAG32118.1|  unknown [environmental sequence]                   80   9e-14 
ref|ZP_01669583.1|  RNA polymerase, sigma 70 subunit, RpoD f...    80   9e-14 
gb|ABE11500.1|  type II alternative RNA polymerase sigma fac...    80   9e-14 
gb|ABE11426.1|  type II alternative RNA polymerase sigma fac...    80   9e-14 
ref|NP_825363.1|  RNA polymerase sigma factor [Streptomyces ...    80   9e-14 
ref|YP_463933.1|  sigma 70 (RpoD) [Anaeromyxobacter dehaloge...    80   9e-14 
ref|YP_397881.1|  type II alternative RNA polymerase sigma f...    80   9e-14 
ref|YP_248242.1|  RNA polymerase sigma factor RpoD [Haemophi...    80   9e-14 
ref|YP_398287.1|  type II alternative RNA polymerase sigma f...    80   9e-14 
ref|NP_971952.1|  RNA polymerase sigma factor [Treponema den...    80   9e-14 
ref|NP_876254.1|  DNA-directed RNA polymerase sigma subunit ...    80   9e-14 
ref|NP_623345.1|  RNA polymerase sigma factor [Thermoanaerob...    80   9e-14 
ref|YP_047462.1|  sigma D (sigma 70) factor of RNA polymeras...    80   9e-14 
ref|NP_438691.1|  RNA polymerase sigma-70 factor [Haemophilu...    80   9e-14 
ref|NP_773989.1|  RNA polymerase sigma factor [Bradyrhizobiu...    80   9e-14 
dbj|BAA82139.1|  sigma factor of sigB family [Streptomyces g...    80   9e-14 
ref|ZP_01189238.1|  Sigma-70 region 1.2 [Halothermothrix ore...    80   9e-14 
ref|ZP_00862992.1|  primary sigma factor [Bradyrhizobium sp....    80   9e-14 
ref|YP_530860.1|  sigma 70 (RpoD) [Rhodopseudomonas palustri...    80   9e-14 
ref|ZP_00518002.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    80   9e-14 
ref|ZP_00155526.1|  COG0568: DNA-directed RNA polymerase, si...    80   9e-14 
ref|ZP_01658093.1|  RNA polymerase sigma subunit [Parvibacul...    80   1e-13 
gb|AAW57030.1|  putative group 2 RNA polymerase sigma factor...    80   1e-13 
ref|ZP_01576135.1|  RNA polymerase, sigma 38 subunit, RpoS [...    80   1e-13 
ref|YP_898555.1|  RNA polymerase sigma-70 factor [Francisell...    80   1e-13 
ref|ZP_01531420.1|  RNA polymerase, sigma 28 subunit [Roseif...    80   1e-13 
emb|CAA90874.1|  sigma factor [Bacillus coagulans]                 80   1e-13 
gb|AAW50925.1|  RpoD [Chryseobacterium indologenes]                80   1e-13 
ref|NP_623234.1|  sporulation sigma factor SigG [Thermoanaer...    80   1e-13 
ref|YP_170018.1|  RNA polymerase sigma-70 factor [Francisell...    80   1e-13 
ref|YP_100026.1|  RNA polymerase sigma factor RpoD [Bacteroi...    80   1e-13 
ref|NP_442349.1|  RNA polymerase sigma-like factor [Synechoc...    80   1e-13 
ref|ZP_01196540.1|  Sigma-70 factor [Xanthobacter autotrophi...    80   1e-13 
ref|ZP_01172381.1|  sigma factor B [Bacillus sp. NRRL B-1491...    80   1e-13 
ref|ZP_01083937.1|  Type II alternative RNA polymerase sigma...    80   1e-13 
ref|ZP_01084359.1|  Type II alternative RNA polymerase sigma...    80   1e-13 
ref|YP_723543.1|  RNA polymerase, sigma 28 subunit [Trichode...    80   1e-13 
ref|ZP_00583112.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    80   1e-13 
gb|EAJ11727.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAI77258.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAI69655.1|  unknown [environmental sequence]                   79   2e-13 
gb|EAY45040.1|  RNA polymerase, sigma 28 subunit [Bacillus c...    79   2e-13 
ref|YP_797993.1|  DNA-directed RNA polymerase, sigma subunit...    79   2e-13 
ref|YP_643786.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    79   2e-13 
dbj|BAE95539.1|  putative RNA polymerase sigma factor [Strep...    79   2e-13 
gb|AAM12034.1|  sigma factor protein [Zea mays]                    79   2e-13 
ref|YP_478414.1|  RNA polymerase sigma factor RpoD [Synechoc...    79   2e-13 
gb|AAB08043.1|  sigma factor [Thermoanaerobacterium thermosu...    79   2e-13 
ref|YP_400801.1|  group3 RNA polymerase sigma factor SigF [S...    79   2e-13 
ref|YP_513750.1|  RNA polymerase sigma-70 factor [Francisell...    79   2e-13 
ref|YP_173019.1|  sigma factor SigF [Synechococcus elongatus...    79   2e-13 
ref|NP_628216.1|  RNA polymerase sigma factor [Streptomyces ...    79   2e-13 
ref|NP_712413.1|  RNA polymerase sigma-70 factor [Leptospira...    79   2e-13 
ref|NP_721232.1|  RNA polymerase sigma factor [Streptococcus...    79   2e-13 
ref|ZP_01117642.1|  RNA polymerase sigma-70 factor [Polariba...    79   2e-13 
ref|ZP_00783989.1|  RNA polymerase sigma-70 factor [Streptoc...    79   2e-13 
ref|NP_688423.1|  RNA polymerase sigma factor [Streptococcus...    79   2e-13 
gb|EAY43307.1|  RNA polymerase, sigma 28 subunit [Bacillus c...    79   2e-13 
ref|YP_095314.1|  stationary phase specific sigma factor Rpo...    79   2e-13 
gb|AAD51396.1|AF117715_5  stationary phase specific sigma fa...    79   2e-13 
ref|YP_126598.1|  RNA polymerase sigma factor RpoS [Legionel...    79   2e-13 
ref|ZP_00544654.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    79   2e-13 
ref|ZP_00875303.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    79   2e-13 
ref|YP_645363.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    79   2e-13 
ref|ZP_00134667.1|  COG0568: DNA-directed RNA polymerase, si...    79   2e-13 
ref|ZP_00109119.1|  COG0568: DNA-directed RNA polymerase, si...    79   2e-13 
gb|EAK06917.1|  unknown [environmental sequence]                   79   3e-13 
gb|EAI98023.1|  unknown [environmental sequence]                   79   3e-13 
gb|EAD22168.1|  unknown [environmental sequence]                   79   3e-13 
ref|YP_001014380.1|  Putative principal RNA polymerase sigma...    79   3e-13 
ref|ZP_01622514.1|  RNA polymerase sigma factor [Lyngbya sp....    79   3e-13 
ref|ZP_01619659.1|  sigma factor SigF [Lyngbya sp. PCC 8106]...    79   3e-13 
ref|YP_810570.1|  DNA-directed RNA polymerase, sigma subunit...    79   3e-13 
ref|ZP_01472547.1|  RNA polymerase sigma factor [Synechococc...    79   3e-13 
ref|ZP_01469105.1|  type II alternative RNA polymerase sigma...    79   3e-13 
ref|ZP_01470142.1|  RNA polymerase sigma factor [Synechococc...    79   3e-13 
ref|YP_778037.1|  RNA polymerase, sigma 28 subunit [Burkhold...    79   3e-13 
ref|YP_761566.1|  RNA polymerase sigma factor RpoD [Hyphomon...    79   3e-13 
ref|YP_731235.1|  RNA polymerase sigma factor RpoD [Synechoc...    79   3e-13 
ref|ZP_01286913.1|  Sigma-70-like protein [delta proteobacte...    79   3e-13 
ref|ZP_01290621.1|  Sigma-70-like protein [delta proteobacte...    79   3e-13 
ref|ZP_01273061.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    79   3e-13 
gb|AAT36674.1|  DNA-directed RNA polymerase sigma A subunit ...    79   3e-13 
ref|YP_381010.1|  RNA polymerase sigma factor [Synechococcus...    79   3e-13 
ref|YP_378294.1|  type II alternative RNA polymerase sigma f...    79   3e-13 
ref|YP_377680.1|  RNA polymerase sigma factor [Synechococcus...    79   3e-13 
ref|YP_293020.1|  RNA polymerase sigma factor [Prochlorococc...    79   3e-13 
ref|YP_139907.1|  RNA polymerase sigma factor [Streptococcus...    79   3e-13 
ref|NP_782577.1|  RNA polymerase sigma factor [Clostridium t...    79   3e-13 
ref|YP_174316.1|  sigma factor B [Bacillus clausii KSM-K16] ...    79   3e-13 
ref|NP_897874.1|  RNA polymerase sigma factor [Synechococcus...    79   3e-13 
ref|ZP_01123169.1|  RNA polymerase sigma factor [Synechococc...    79   3e-13 
ref|ZP_01085461.1|  RNA polymerase sigma factor [Synechococc...    79   3e-13 
ref|ZP_01079728.1|  Sigma-70 factor [Synechococcus sp. RS991...    79   3e-13 
ref|ZP_00778637.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    79   3e-13 
ref|YP_580389.1|  sigma 70 (RpoD) [Psychrobacter cryohalolen...    79   3e-13 
ref|YP_141834.1|  RNA polymerase sigma factor [Streptococcus...    79   3e-13 
gb|EAJ96257.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAJ61837.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAD35451.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAG15381.1|  unknown [environmental sequence]                   78   3e-13 
gb|EAG00457.1|  unknown [environmental sequence]                   78   3e-13 
ref|ZP_01354864.1|  RNA polymerase sigma factor RpoD-like [C...    78   3e-13 
ref|YP_358084.1|  RNA polymerase, sigma(70) factor [Pelobact...    78   3e-13 
ref|YP_360874.1|  sporulation sigma factor SigG [Carboxydoth...    78   3e-13 
ref|YP_153778.1|  RNA polymerase sigma factor [Anaplasma mar...    78   3e-13 
ref|YP_427966.1|  Sigma 70 (RpoD) [Rhodospirillum rubrum ATC...    78   3e-13 
ref|YP_011006.1|  RNA polymerase sigma-70 factor [Desulfovib...    78   3e-13 
ref|NP_873221.1|  RNA polymerase sigma factor [Haemophilus d...    78   3e-13 
ref|YP_388544.1|  Sigma-70 factor [Desulfovibrio desulfurica...    78   3e-13 
ref|NP_269001.1|  RNA polymerase sigma factor [Streptococcus...    78   3e-13 
ref|NP_607002.1|  RNA polymerase sigma factor [Streptococcus...    78   3e-13 
ref|YP_075641.1|  sporulation sigma factor SigF [Symbiobacte...    78   3e-13 
ref|YP_074417.1|  RNA polymerase sigma factor [Symbiobacteri...    78   3e-13 
ref|NP_893814.1|  Type II alternative RNA polymerase sigma f...    78   3e-13 
ref|NP_664323.1|  RNA polymerase sigma factor [Streptococcus...    78   3e-13 
sp|P52328|RPSD2_BACSP  RNA polymerase sigma factor rpoD (Sig...    78   3e-13 
ref|NP_691551.1|  sigma factor B [Oceanobacillus iheyensis H...    78   3e-13 
ref|NP_681621.1|  RNA polymerase sigma factor [Thermosynecho...    78   3e-13 
ref|ZP_01146819.1|  Carbamoyl-phosphate synthase L chain, AT...    78   3e-13 
ref|ZP_00732340.1|  DNA-directed RNA polymerase sigma subuni...    78   3e-13 
ref|YP_902702.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    78   3e-13 
ref|YP_923122.1|  sigma-70 region 4 domain protein [Nocardio...    78   3e-13 
ref|ZP_00518496.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    78   3e-13 
ref|YP_645047.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    78   3e-13 
ref|NP_345546.1|  RNA polymerase sigma factor [Streptococcus...    78   3e-13 
gb|EAK25233.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ87351.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ68451.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ65619.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ29841.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ24195.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAJ07403.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAI80766.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAI68414.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAI37053.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAI01206.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAH64107.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAH33936.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAG96638.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAG58419.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAG24390.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAG17456.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAF68485.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAF61004.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAF52371.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAB50120.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAB48356.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAB20498.1|  unknown [environmental sequence]                   78   4e-13 
gb|EAD98603.1|  unknown [environmental sequence]                   78   4e-13 
ref|ZP_01608300.1|  RNA polymerase, sigma 70 subunit, RpoD f...    78   4e-13 
ref|ZP_01556121.1|  RNA polymerase, sigma 28 subunit [Burkho...    78   4e-13 
ref|ZP_01548438.1|  RNA polymerase sigma factor [Stappia agg...    78   4e-13 
ref|ZP_01465004.1|  RNA polymerase sigma factor for flagella...    78   4e-13 
ref|ZP_01264797.1|  RNA polymerase sigma factor [Candidatus ...    78   4e-13 
ref|NP_113247.1|  RNA-polymerase sigma factor [Guillardia th...    78   4e-13 
ref|YP_265465.1|  RNA polymerase sigma factor [Candidatus Pe...    78   4e-13 
ref|YP_088952.1|  RNA polymerase sigma factor [Mannheimia su...    78   4e-13 
ref|YP_079858.1|  RNA polymerase sigma factor [Bacillus lich...    78   4e-13 
ref|YP_302957.1|  RNA polymerase sigma factor rpoD [Ehrlichi...    78   4e-13 
ref|NP_246178.1|  RNA polymerase sigma factor [Pasteurella m...    78   4e-13 
ref|ZP_01544302.1|  DNA-directed RNA polymerase RpoD, sigma ...    78   4e-13 
ref|YP_148335.1|  RNA polymerase sigma factor [Geobacillus k...    78   4e-13 
dbj|BAB87262.1|  RNA polymerase sigma factor [Guillardia theta]    78   4e-13 
ref|YP_001002679.1|  RNA polymerase, sigma 70 subunit, RpoD ...    78   4e-13 
ref|ZP_01110015.1|  sigma S (sigma 38) factor of RNA polymer...    78   4e-13 
ref|ZP_00504734.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    78   4e-13 
ref|YP_720677.1|  RNA polymerase, sigma 28 subunit [Trichode...    78   4e-13 
gb|EAJ96486.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAJ54570.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAI92579.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAI70444.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAI35953.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAD22997.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAC72528.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAF87419.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAB43353.1|  unknown [environmental sequence]                   77   6e-13 
gb|EAE30238.1|  unknown [environmental sequence]                   77   6e-13 
ref|YP_001018990.1|  Type II alternative RNA polymerase sigm...    77   6e-13 
ref|ZP_01631394.1|  RNA polymerase sigma factor [Nodularia s...    77   6e-13 
ref|ZP_01530259.1|  RNA polymerase, sigma 28 subunit [Roseif...    77   6e-13 
ref|ZP_01422082.1|  RNA polymerase sigma factor RpoD-like [C...    77   6e-13 
ref|ZP_01370036.1|  RNA polymerase, sigma 38 subunit, RpoS [...    77   6e-13 
ref|ZP_01359263.1|  RNA polymerase sigma factor RpoD-like [R...    77   6e-13 
ref|ZP_01254628.1|  putative sigma factor A [Psychroflexus t...    77   6e-13 
ref|YP_476911.1|  RNA polymerase sigma factor, group 1 [Syne...    77   6e-13 
ref|YP_429497.1|  sigma 38 (RpoS) [Moorella thermoacetica AT...    77   6e-13 
ref|NP_781527.1|  RNA polymerase sigma factor rpoD [Clostrid...    77   6e-13 
ref|YP_519280.1|  hypothetical protein DSY3047 [Desulfitobac...    77   6e-13 
ref|NP_489303.1|  RNA polymerase sigma factor [Nostoc sp. PC...    77   6e-13 
ref|NP_681289.1|  group 2 RNA polymerase sigma factor [Therm...    77   6e-13 
ref|NP_103805.1|  RNA polymerase sigma factor [Mesorhizobium...    77   6e-13 
ref|NP_421841.1|  RNA polymerase sigma factor [Caulobacter c...    77   6e-13 
ref|YP_846638.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    77   6e-13 
ref|YP_674026.1|  RNA polymerase, sigma 38 subunit, RpoS [Me...    77   6e-13 
ref|ZP_00109949.1|  COG0568: DNA-directed RNA polymerase, si...    77   6e-13 
gb|EAK34885.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAI52849.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAI49447.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAH97048.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAH28982.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAD57579.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAG10768.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAE03975.1|  unknown [environmental sequence]                   77   8e-13 
gb|EAD97854.1|  unknown [environmental sequence]                   77   8e-13 
ref|YP_768982.1|  putative RNA polymerase sigma factor RpoD ...    77   8e-13 
ref|ZP_01425519.1|  sigma-70 region 2 [Herpetosiphon auranti...    77   8e-13 
ref|ZP_01414255.1|  RNA polymerase sigma factor transcriptio...    77   8e-13 
ref|ZP_01361576.1|  RNA polymerase sigma factor RpoD-like [C...    77   8e-13 
ref|ZP_01255892.1|  RNA polymerase sigma factor [Psychroflex...    77   8e-13 
emb|CAA70052.1|  RNA polymerase sigma-70 subunit [Rhizobium ...    77   8e-13 
ref|YP_470444.1|  RNA polymerase sigma factor protein (sigma...    77   8e-13 
ref|YP_505167.1|  RNA polymerase sigma factor RpoD [Anaplasm...    77   8e-13 
ref|YP_264544.1|  putative sigma-70 factor (RpoD) [Psychroba...    77   8e-13 
ref|YP_092276.1|  RNA polymerase sigma factor [Bacillus lich...    77   8e-13 
ref|NP_860076.1|  RNA polymerase sigma factor [Helicobacter ...    77   8e-13 
ref|YP_519127.1|  hypothetical protein DSY2894 [Desulfitobac...    77   8e-13 
ref|NP_386420.1|  RNA polymerase sigma factor [Sinorhizobium...    77   8e-13 
ref|NP_355127.1|  RNA polymerase sigma factor [Agrobacterium...    77   8e-13 
ref|NP_478255.1|  group 2 sigma 70-type sigma factor [Nostoc...    77   8e-13 
ref|YP_663418.1|  RNA polymerase, sigma 28 subunit [Pseudoal...    77   8e-13 
ref|ZP_01369875.1|  RNA polymerase, sigma 28 subunit [Desulf...    77   8e-13 
ref|YP_604810.1|  RNA polymerase, sigma 28 subunit [Deinococ...    77   8e-13 
ref|ZP_00049697.1|  COG0568: DNA-directed RNA polymerase, si...    77   8e-13 
ref|ZP_00768663.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    77   8e-13 
gb|EAK66974.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAK36742.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAK31826.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAI64341.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAH21663.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAG96339.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAC46703.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAC11536.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAF51122.1|  unknown [environmental sequence]                   77   1e-12 
gb|EAF23572.1|  unknown [environmental sequence]                   77   1e-12 
ref|YP_001008946.1|  Putative principal RNA polymerase sigma...    77   1e-12 
ref|YP_001010876.1|  Putative principal RNA polymerase sigma...    77   1e-12 
ref|ZP_01505474.1|  RNA polymerase, sigma 70 subunit, RpoD [...    77   1e-12 
ref|ZP_01451363.1|  RpoS [Mariprofundus ferrooxydans PV-1] >...    77   1e-12 
ref|ZP_01449025.1|  putative RNA polymerase sigma-38 factor ...    77   1e-12 
ref|ZP_01287133.1|  Sigma-70-like protein [delta proteobacte...    77   1e-12 
ref|YP_476012.1|  RNA polymerase sigma factor, group 1 [Syne...    77   1e-12 
ref|YP_396994.1|  Sigma-70 factor [Prochlorococcus marinus s...    77   1e-12 
ref|YP_222163.1|  RNA polymerase sigma factor [Brucella abor...    77   1e-12 
ref|YP_190747.1|  RNA polymerase sigma factor [Gluconobacter...    77   1e-12 
ref|YP_420060.1|  DNA-directed RNA polymerase [Magnetospiril...    77   1e-12 
ref|YP_175291.1|  sporulation sigma factor SigF [Bacillus cl...    77   1e-12 
ref|YP_066239.1|  RNA polymerase sigma factor (RpoD) [Desulf...    77   1e-12 
ref|NP_896070.1|  Type II alternative RNA polymerase sigma f...    77   1e-12 
ref|NP_892614.1|  RNA polymerase sigma factor [Prochlorococc...    77   1e-12 
ref|NP_539449.1|  RNA polymerase sigma factor [Brucella meli...    77   1e-12 
pdb|1L0O|C  Chain C, Crystal Structure Of The Bacillus Stear...    77   1e-12 
ref|ZP_01173341.1|  RNA polymerase sigma factor [Bacillus sp...    77   1e-12 
ref|ZP_00799911.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    77   1e-12 
ref|ZP_00509945.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    77   1e-12 
ref|ZP_00053224.1|  COG0568: DNA-directed RNA polymerase, si...    77   1e-12 
gb|EAK65754.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAK47702.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAJ57239.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAI39803.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAI36306.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAF51869.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAB14516.1|  unknown [environmental sequence]                   76   1e-12 
gb|EAA92136.1|  unknown [environmental sequence]                   76   1e-12 
ref|YP_001015998.1|  Type II alternative RNA polymerase sigm...    76   1e-12 
ref|ZP_01666024.1|  RNA polymerase, sigma 70 subunit, RpoD f...    76   1e-12 
ref|ZP_01437882.1|  RNA polymerase sigma factor protein (sig...    76   1e-12 
ref|YP_746105.1|  RNA polymerase sigma factor rpoD [Granulib...    76   1e-12 
ref|ZP_01434320.1|  sigma 28 (Flagella/Sporulation) [Shewane...    76   1e-12 
ref|ZP_01424054.1|  RNA polymerase sigma factor RpoD-like [H...    76   1e-12 
ref|YP_757359.1|  RNA polymerase, sigma 70 subunit, RpoD [Ma...    76   1e-12 
ref|YP_944863.1|  predicted sigma-28 (sigma F) factor [Psych...    76   1e-12 
ref|YP_619119.1|  RNA polymerase sigma factor RpoD (Sigma-A)...    76   1e-12 
ref|YP_382944.1|  type II alternative RNA polymerase sigma f...    76   1e-12 
gb|ABA27305.1|  sigma 2 transcription factor [Bigelowiella n...    76   1e-12 
ref|YP_292498.1|  type II alternative RNA polymerase sigma f...    76   1e-12 
ref|YP_163358.1|  RNA polymerase sigma factor [Zymomonas mob...    76   1e-12 
ref|NP_903352.1|  RNA polymerase sigma factor [Chromobacteri...    76   1e-12 
ref|NP_898585.1|  Type II alternative RNA polymerase sigma f...    76   1e-12 
ref|NP_630601.1|  RNA polymerase sigma factor [Streptomyces ...    76   1e-12 
ref|NP_374674.1|  RNA polymerase sigma factor [Staphylococcu...    76   1e-12 
ref|ZP_01190097.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    76   1e-12 
ref|ZP_01180543.1|  Sigma-70 region 1.2 [Bacillus cereus sub...    76   1e-12 
ref|ZP_01167323.1|  RNA polymerase sigma factor [Oceanospiri...    76   1e-12 
ref|ZP_01124904.1|  Type II alternative RNA polymerase sigma...    76   1e-12 
ref|ZP_01053562.1|  putative sigma factor A [Tenacibaculum s...    76   1e-12 
ref|ZP_00814502.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    76   1e-12 
ref|NP_372085.1|  RNA polymerase sigma factor [Staphylococcu...    76   1e-12 
gb|EAJ67421.1|  unknown [environmental sequence]                   76   2e-12 
gb|EAC44860.1|  unknown [environmental sequence]                   76   2e-12 
gb|EAC35138.1|  unknown [environmental sequence]                   76   2e-12 
gb|EAF21502.1|  unknown [environmental sequence]                   76   2e-12 
gb|EAB07031.1|  unknown [environmental sequence]                   76   2e-12 
ref|ZP_01532959.1|  RNA polymerase, sigma 28 subunit [Roseif...    76   2e-12 
ref|YP_594893.1|  DNA-directed RNA polymerase, sigma subunit...    76   2e-12 
ref|ZP_01300103.1|  hypothetical protein Rgryl_01001344 [Ric...    76   2e-12 
ref|YP_537226.1|  RNA polymerase sigma factor [Rickettsia be...    76   2e-12 
ref|ZP_01225939.1|  DNA-directed RNA polymerase major sigma ...    76   2e-12 
ref|YP_393618.1|  sigma 28 (Flagella/Sporulation) [Thiomicro...    76   2e-12 
ref|NP_823049.1|  RNA polymerase sigma factor [Streptomyces ...    76   2e-12 
ref|NP_875754.1|  DNA-directed RNA polymerase sigma subunit ...    76   2e-12 
ref|YP_253270.1|  RNA polymerase sigma factor [Staphylococcu...    76   2e-12 
ref|NP_925518.1|  RNA polymerase sigma factor [Gloeobacter v...    76   2e-12 
ref|NP_764803.1|  RNA polymerase sigma factor [Staphylococcu...    76   2e-12 
gb|EAK75855.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAJ96842.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAI18925.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAH40083.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAD39715.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAC22543.1|  unknown [environmental sequence]                   75   2e-12 
gb|EAF64750.1|  unknown [environmental sequence]                   75   2e-12 
ref|YP_882149.1|  RNA polymerase sigma-F factor [Mycobacteri...    75   2e-12 
ref|ZP_01426498.1|  RNA polymerase sigma factor RpoD-like [H...    75   2e-12 
ref|YP_643455.1|  RNA polymerase, sigma 28 subunit [Rubrobac...    75   2e-12 
emb|CAJ71462.1|  strongly similar to transcription initiatio...    75   2e-12 
ref|NP_828576.1|  RNA polymerase sigma factor [Streptomyces ...    75   2e-12 
ref|NP_960408.1|  SigF_1 [Mycobacterium avium subsp. paratub...    75   2e-12 
ref|NP_874888.1|  RNA polymerase sigma factor [Prochlorococc...    75   2e-12 
ref|YP_301285.1|  RNA polymerase sigma factor A [Staphylococ...    75   2e-12 
ref|NP_925954.1|  group 2 sigma 70-type sigma factor [Gloeob...    75   2e-12 
ref|NP_681407.1|  RNA polymerase sigma factor [Thermosynecho...    75   2e-12 
ref|ZP_01079233.1|  Type II alternative RNA polymerase sigma...    75   2e-12 
ref|ZP_01018477.1|  RNA polymerase sigma factor [Parvularcul...    75   2e-12 
ref|ZP_01005805.1|  RNA polymerase sigma factor [Prochloroco...    75   2e-12 
ref|ZP_01006332.1|  DNA-directed RNA polymerase sigma subuni...    75   2e-12 
ref|ZP_00952972.1|  RNA polymerase sigma factor [Oceanicauli...    75   2e-12 
ref|ZP_00590904.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   2e-12 
ref|YP_616029.1|  RNA polymerase, sigma 70 subunit, RpoD [Sp...    75   2e-12 
ref|ZP_00514786.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   2e-12 
ref|ZP_00514372.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   2e-12 
ref|ZP_00604924.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    75   2e-12 
ref|ZP_00417973.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   2e-12 
gb|EAJ44405.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAI64042.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAI39457.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAD38102.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAG09662.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAG06764.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAF86357.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAF22317.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAF13539.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAE64849.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAB03008.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAA95592.1|  unknown [environmental sequence]                   75   3e-12 
gb|EAY42991.1|  RNA polymerase, sigma 38 subunit, RpoS [Baci...    75   3e-12 
ref|ZP_01653189.1|  RNA polymerase, sigma 38 subunit, RpoS [...    75   3e-12 
ref|YP_878546.1|  RNA polymerase sigma-70 factor [Clostridiu...    75   3e-12 
ref|ZP_01471506.1|  type II alternative RNA polymerase sigma...    75   3e-12 
emb|CAJ68320.1|  RNA polymerase sigma factor (sigma-43) [Clo...    75   3e-12 
ref|YP_699284.1|  RNA polymerase sigma factor RpoD [Clostrid...    75   3e-12 
ref|ZP_01635363.1|  hypothetical protein CdifQ_03001637 [Clo...    75   3e-12 
ref|YP_475440.1|  RNA polymerase sigma-70 factor family [Syn...    75   3e-12 
gb|AAB95226.1|  sigma factor [Synechococcus sp.]                   75   3e-12 
gb|AAA22047.1|  RNA polymerase sigma-subunit                       75   3e-12 
gb|AAB81010.1|  RNA polymerase principal sigma factor RpoD [...    75   3e-12 
ref|YP_360778.1|  RNA polymerase sigma-F factor [Carboxydoth...    75   3e-12 
ref|YP_399691.1|  group2 RNA polymerase sigma factor SigD [S...    75   3e-12 
ref|YP_079653.1|  sporulation sigma factor SigF [Bacillus li...    75   3e-12 
ref|YP_399668.1|  Sigma-70 factor [Synechococcus elongatus P...    75   3e-12 
ref|YP_322361.1|  sigma factor SigF [Anabaena variabilis ATC...    75   3e-12 
ref|YP_321683.1|  RNA polymerase sigma-like factor [Anabaena...    75   3e-12 
ref|YP_171567.1|  RNA polymerase sigma factor [Synechococcus...    75   3e-12 
ref|YP_171589.1|  RNA polymerase sigma factor [Synechococcus...    75   3e-12 
ref|YP_172955.1|  RNA polymerase sigma-like factor [Synechoc...    75   3e-12 
ref|NP_196877.1|  SIGD (SIGMA-LIKE FACTOR 4); DNA binding / ...    75   3e-12 
ref|NP_562923.1|  RNA polymerase sigma factor [Clostridium p...    75   3e-12 
ref|NP_485732.1|  RNA polymerase sigma-like factor [Nostoc s...    75   3e-12 
dbj|BAA01749.1|  principal sigma factor [Synechococcus elong...    75   3e-12 
ref|NP_442860.1|  RNA polymerase sigma factor [Synechocystis...    75   3e-12 
ref|NP_681055.1|  RNA polymerase sigma factor [Thermosynecho...    75   3e-12 
ref|NP_390399.1|  RNA polymerase sigma factor [Bacillus subt...    75   3e-12 
ref|YP_696687.1|  RNA polymerase sigma factor RpoD [Clostrid...    75   3e-12 
dbj|BAC43527.1|  putative plastid RNA polymerase sigma-subun...    75   3e-12 
ref|YP_926157.1|  DNA-directed RNA polymerase sigma subunit ...    75   3e-12 
ref|ZP_00504016.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   3e-12 
ref|YP_723421.1|  RNA polymerase, sigma 28 subunit [Trichode...    75   3e-12 
gb|EAH96626.1|  unknown [environmental sequence]                   75   4e-12 
gb|EAF62314.1|  unknown [environmental sequence]                   75   4e-12 
gb|EAE68602.1|  unknown [environmental sequence]                   75   4e-12 
gb|EAA83196.1|  unknown [environmental sequence]                   75   4e-12 
ref|ZP_01353031.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   4e-12 
ref|ZP_01292811.1|  hypothetical protein PaerP_01005273 [Pse...    75   4e-12 
ref|YP_073152.1|  RNA polymerase sigma factor [Borrelia gari...    75   4e-12 
gb|AAC45358.1|  group 2 alternative sigma factor [Nostoc pun...    75   4e-12 
gb|AAG00589.1|AF288784_1  SigC [Synechococcus elongatus]           75   4e-12 
gb|AAD42767.1|AF121848_2  SigF [Synechococcus sp. PCC 7002]        75   4e-12 
ref|YP_430348.1|  sigma 28 (Flagella/Sporulation) [Moorella ...    75   4e-12 
ref|NP_834001.1|  RNA polymerase sigma factor [Bacillus cere...    75   4e-12 
ref|NP_815241.1|  RNA polymerase sigma factor [Enterococcus ...    75   4e-12 
ref|NP_487893.1|  sigma factor SigF [Nostoc sp. PCC 7120] >g...    75   4e-12 
sp|P26764|RPSF_BACLI  RNA polymerase sigma-F factor (Stage I...    75   4e-12 
ref|NP_242404.1|  sporulation sigma factor SigF [Bacillus ha...    75   4e-12 
ref|NP_249267.1|  sigma factor RpoD [Pseudomonas aeruginosa ...    75   4e-12 
ref|ZP_00798142.1|  COG0568: DNA-directed RNA polymerase, si...    75   4e-12 
ref|ZP_00741832.1|  RNA polymerase sigma factor rpoD [Bacill...    75   4e-12 
ref|YP_926700.1|  RNA polymerase sigma-70 factor [Shewanella...    75   4e-12 
ref|ZP_00515654.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    75   4e-12 
ref|ZP_00972254.1|  COG0568: DNA-directed RNA polymerase, si...    75   4e-12 
ref|NP_980665.1|  RNA polymerase sigma factor [Bacillus cere...    75   4e-12 
ref|ZP_00111755.1|  COG0568: DNA-directed RNA polymerase, si...    75   4e-12 
ref|NP_846739.1|  RNA polymerase sigma factor [Bacillus anth...    75   4e-12 
gb|EAK20725.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAK09362.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAJ57138.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAD17371.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAD16367.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAF50424.1|  unknown [environmental sequence]                   74   5e-12 
gb|EAB52506.1|  unknown [environmental sequence]                   74   5e-12 
ref|YP_710160.1|  RNA polymerase sigma-70 factor [Borrelia a...    74   5e-12 
ref|YP_706743.1|  sigma factor, sigma 70 type, group 2 (prov...    74   5e-12 
ref|ZP_01305098.1|  sigma 70 (RpoD) [Sphingomonas sp. SKA58]...    74   5e-12 
ref|YP_497506.1|  sigma 70 (RpoD) [Novosphingobium aromatici...    74   5e-12 
ref|YP_574677.1|  sigma 28 (Flagella/Sporulation) [Chromohal...    74   5e-12 
gb|AAC44890.1|  sigma 70-type sigma factor SigA [Heliobacill...    74   5e-12 
ref|YP_292050.1|  DNA-directed RNA polymerase sigma subunit ...    74   5e-12 
ref|YP_458022.1|  RNA polymerase sigma-70 factor [Erythrobac...    74   5e-12 
ref|YP_323589.1|  sigma factor SigF [Anabaena variabilis ATC...    74   5e-12 
ref|NP_904881.1|  RNA polymerase sigma-70 factor [Porphyromo...    74   5e-12 
ref|NP_718985.1|  RNA polymerase sigma-38 factor [Shewanella...    74   5e-12 
ref|NP_622937.1|  DNA-directed RNA polymerase specialized si...    74   5e-12 
dbj|BAA19494.1|  sigA=sigma70 [Staphylococcus aureus]              74   5e-12 
ref|NP_218934.1|  RNA polymerase sigma factor [Treponema pal...    74   5e-12 
ref|ZP_01148216.1|  RNA polymerase sigma-F factor [Desulfoto...    74   5e-12 
ref|ZP_01089181.1|  RNA polymerase sigma factor rpoD [Blasto...    74   5e-12 
ref|ZP_00960215.1|  RNA polymerase sigma factor [Roseovarius...    74   5e-12 
ref|ZP_00801890.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    74   5e-12 
gb|EAK67791.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAK54980.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAK44999.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAJ39276.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAI09868.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAH79936.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAH56224.1|  unknown [environmental sequence]                   74   6e-12 
gb|EAF40411.1|  unknown [environmental sequence]                   74   6e-12 
ref|ZP_01585264.1|  RNA polymerase, sigma 70 subunit, RpoD f...    74   6e-12 
ref|ZP_01575412.1|  RNA polymerase, sigma 28 subunit [Clostr...    74   6e-12 
ref|ZP_01570831.1|  RNA polymerase, sigma 32 subunit, RpoH [...    74   6e-12 
ref|ZP_01524415.1|  RNA polymerase, sigma 38 subunit, RpoS [...    74   6e-12 
ref|ZP_01471645.1|  type II alternative RNA polymerase sigma...    74   6e-12 
ref|ZP_01443990.1|  RNA polymerase sigma factor [Roseovarius...    74   6e-12 
ref|YP_682098.1|  RNA polymerase sigma-70 factor RpoD [Roseo...    74   6e-12 
ref|YP_626830.1|  RNA polymerase sigma-80 factor [Helicobact...    74   6e-12 
ref|ZP_01276427.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    74   6e-12 
ref|YP_511392.1|  sigma 38 (RpoS) [Jannaschia sp. CCS1] >gi|...    74   6e-12 
gb|AAC45105.1|  primary sigma factor [Borrelia garinii]            74   6e-12 
gb|AAC45106.1|  primary sigma factor [Borrelia garinii]            74   6e-12 
gb|AAC45101.1|  primary sigma factor [Borrelia garinii]            74   6e-12 
gb|AAC44104.1|  primary sigma factor                               74   6e-12 
gb|AAC45097.1|  primary sigma factor [Borrelia afzelii]            74   6e-12 
gb|AAC64856.1|  sigma 80 [Helicobacter pylori]                     74   6e-12 
gb|AAC45103.1|  primary sigma factor [Borrelia garinii]            74   6e-12 
gb|AAC45104.1|  primary sigma factor [Borrelia garinii] >gi|...    74   6e-12 
gb|ABC72013.1|  SigB [Listeria monocytogenes] >gi|85679197|g...    74   6e-12 
gb|ABC72014.1|  SigB [Listeria monocytogenes] >gi|85679205|g...    74   6e-12 
ref|YP_344056.1|  RpoD [Nitrosococcus oceani ATCC 19707] >gi...    74   6e-12 
ref|YP_270983.1|  RNA polymerase sigma-70 factor [Colwellia ...    74   6e-12 
ref|YP_166988.1|  RNA polymerase sigma factor [Silicibacter ...    74   6e-12 
ref|YP_322409.1|  RNA polymerase sigma factor [Anabaena vari...    74   6e-12 
ref|YP_400574.1|  principal RNA polymerase sigma factor SigA...    74   6e-12 
ref|NP_604215.1|  RNA polymerase sigma factor rpoD [Fusobact...    74   6e-12 
ref|NP_222803.1|  RNA polymerase sigma factor [Helicobacter ...    74   6e-12 
ref|NP_212846.1|  RNA polymerase sigma factor [Borrelia burg...    74   6e-12 
ref|YP_170725.1|  group2 RNA polymerase sigma factor RpoD6 [...    74   6e-12 
dbj|BAC75680.1|  sigma L [Streptomyces griseus]                    74   6e-12 
ref|NP_487850.1|  RNA polymerase sigma factor [Nostoc sp. PC...    74   6e-12 
ref|NP_442891.1|  sigma factor SigF [Synechocystis sp. PCC 6...    74   6e-12 
ref|NP_777686.1|  RNA polymerase sigma factor RpoD [Buchnera...    74   6e-12 
ref|ZP_01158102.1|  RNA polymerase sigma factor [Oceanicola ...    74   6e-12 
ref|ZP_01056473.1|  RNA polymerase sigma-70 factor RpoD [Ros...    74   6e-12 
ref|ZP_01015565.1|  RNA polymerase sigma factor [Rhodobacter...    74   6e-12 
ref|ZP_00953618.1|  RNA polymerase sigma factor [Sulfitobact...    74   6e-12 
ref|ZP_00628660.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    74   6e-12 
ref|YP_614135.1|  RNA polymerase, sigma 38 subunit, RpoS [Si...    74   6e-12 
ref|YP_733260.1|  RNA polymerase, sigma 28 subunit [Shewanel...    74   6e-12 
ref|ZP_00108618.1|  COG0568: DNA-directed RNA polymerase, si...    74   6e-12 
ref|ZP_00144580.1|  RNA polymerase sigma factor rpoD [Fusoba...    74   6e-12 
gb|EAG56280.1|  unknown [environmental sequence]                   74   8e-12 
gb|EAC15121.1|  unknown [environmental sequence]                   74   8e-12 
gb|EAF22006.1|  unknown [environmental sequence]                   74   8e-12 
gb|EAF17679.1|  unknown [environmental sequence]                   74   8e-12 
gb|EAB49407.1|  unknown [environmental sequence]                   74   8e-12 
ref|ZP_01649338.1|  RNA polymerase, sigma 28 subunit [Salini...    74   8e-12 
ref|ZP_01630256.1|  sigma factor SigF [Nodularia spumigena C...    74   8e-12 
ref|ZP_01527762.1|  RNA polymerase, sigma 28 subunit [Pseudo...    74   8e-12 
ref|YP_873188.1|  RNA polymerase, sigma 28 subunit [Acidothe...    74   8e-12 
ref|YP_813135.1|  DNA-directed RNA polymerase, sigma subunit...    74   8e-12 
ref|ZP_01428477.1|  RNA polymerase sigma factor RpoD-like [S...    74   8e-12 
ref|YP_726126.1|  DNA-directed RNA polymerase sigma subunit ...    74   8e-12 
dbj|GAA02012.1|  unnamed protein product [Pelotomaculum ther...    74   8e-12 
ref|ZP_01306488.1|  RNA polymerase sigma factor [Oceanobacte...    74   8e-12 
gb|AAX92787.1|  Sigma-70 region 3, putative [Oryza sativa (j...    74   8e-12 
gb|AAS82950.1|  chloroplast RPOD [Chlamydomonas reinhardtii]       74   8e-12 
gb|AAM88387.2|AF525691_1  RNA polymerase sigma factor [Chlam...    74   8e-12 
gb|AAB02846.1|  RpoS                                               74   8e-12 
gb|AAC45098.1|  primary sigma factor [Borrelia afzelii] >gi|...    74   8e-12 
gb|AAB39998.1|  sigma factor [Synechococcus sp.]                   74   8e-12 
ref|YP_456303.1|  RNA polymerase sigma factor RpoD [Aster ye...    74   8e-12 
ref|YP_437346.1|  RNA polymerase sigma-70 factor RpoD [Hahel...    74   8e-12 
ref|YP_258338.1|  RNA polymerase sigma factor [Pseudomonas f...    74   8e-12 
gb|AAX96171.1|  Sigma-70 region 3, putative [Oryza sativa (j...    74   8e-12 
ref|YP_400763.1|  group2 RNA polymerase sigma factor SigB [S...    74   8e-12 
ref|NP_971547.1|  RNA polymerase sigma-70 factor family prot...    74   8e-12 
ref|NP_348922.1|  sporulation sigma factor SigF [Clostridium...    74   8e-12 
dbj|BAC78528.1|  plastid sigma factor 2A [Oryza sativa (japo...    74   8e-12 
ref|NP_347931.1|  RNA polymerase sigma factor [Clostridium a...    74   8e-12 
sp|O24744|RPOD_SHEVI  RNA polymerase sigma factor rpoD (Sigm...    74   8e-12 
ref|NP_484321.1|  sigma factor SigF [Nostoc sp. PCC 7120] >g...    74   8e-12 
dbj|BAA84590.1|  RNA polymerase sigma 70 [Helicobacter pylori]     74   8e-12 
dbj|BAA22190.1|  RpoD2 protein [Synechococcus sp.]                 74   8e-12 
dbj|BAB64922.1|  chloroplast RNA polymerase sigma factor [Ch...    74   8e-12 
sp|P46400|RPOD_RHOCA  RNA polymerase sigma factor rpoD (Sigm...    74   8e-12 
ref|ZP_01004945.1|  DNA-directed RNA polymerase sigma subuni...    74   8e-12 
ref|ZP_01002741.1|  RNA polymerase sigma factor [Loktanella ...    74   8e-12 
ref|ZP_01000877.1|  RNA polymerase sigma factor [Oceanicola ...    74   8e-12 
ref|ZP_00914828.1|  Sigma-70 factor [Rhodobacter sphaeroides...    74   8e-12 
ref|YP_754181.1|  sigma 38 (RpoS) [Syntrophomonas wolfei sub...    74   8e-12 
ref|ZP_00766453.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    74   8e-12 
ref|ZP_00109707.2|  COG1191: DNA-directed RNA polymerase spe...    74   8e-12 
ref|ZP_00538631.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    74   8e-12 
ref|YP_353471.1|  RNA polymerase sigma factor [Rhodobacter s...    74   8e-12 
gb|EAI02129.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAG28146.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAC70063.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAE05357.1|  unknown [environmental sequence]                   73   1e-11 
ref|ZP_01650384.1|  anti-sigma-factor antagonist [Salinispor...    73   1e-11 
ref|ZP_01631231.1|  RNA polymerase sigma-like factor [Nodula...    73   1e-11 
ref|ZP_01515421.1|  sigma-70 region 3 [Chloroflexus aggregan...    73   1e-11 
ref|YP_818712.1|  DNA-directed RNA polymerase, sigma subunit...    73   1e-11 
ref|ZP_01470315.1|  Type II alternative RNA polymerase sigma...    73   1e-11 
ref|ZP_01431067.1|  sigma-70 region 2 [Salinispora tropica C...    73   1e-11 
ref|ZP_01361900.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|YP_589041.1|  RNA polymerase, sigma 70 factor [Baumannia...    73   1e-11 
gb|AAK09321.1|AF320817_2  sigma factor SigA [Brevibacterium ...    73   1e-11 
ref|YP_478921.1|  RNA polymerase sigma-70 factor family [Syn...    73   1e-11 
gb|AAC45108.1|  primary sigma factor [Borrelia japonica]           73   1e-11 
gb|AAC45100.1|  primary sigma factor [Borrelia burgdorferi]        73   1e-11 
ref|YP_277575.1|  RNA polymerase sigma-70 factor [Candidatus...    73   1e-11 
ref|YP_143798.1|  RNA polymerase pricipal sigma factor (RpoD...    73   1e-11 
ref|YP_033919.1|  RNA polymerase sigma factor [Bartonella he...    73   1e-11 
ref|YP_226152.1|  RNA polymerase sigma factor [Corynebacteri...    73   1e-11 
ref|NP_867197.1|  transcription initiation factor sigma 70 [...    73   1e-11 
ref|NP_738414.1|  RNA polymerase sigma factor [Corynebacteri...    73   1e-11 
ref|NP_445653.1|  RNA polymerase sigma factor [Chlamydophila...    73   1e-11 
ref|NP_242242.1|  RNA polymerase sigma factor [Bacillus halo...    73   1e-11 
ref|NP_243420.1|  sporulation sigma factor SigG [Bacillus ha...    73   1e-11 
ref|NP_601117.2|  RNA polymerase sigma factor [Corynebacteri...    73   1e-11 
ref|NP_224951.1|  RNA polymerase sigma factor [Chlamydophila...    73   1e-11 
ref|YP_004139.1|  RNA polymerase sigma factor rpoD [Thermus ...    73   1e-11 
ref|NP_206888.1|  RNA polymerase sigma factor [Helicobacter ...    73   1e-11 
ref|ZP_01194603.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|ZP_01075675.1|  RNA polymerase sigma factor [Marinomonas...    73   1e-11 
ref|ZP_01036318.1|  RNA polymerase sigma factor [Roseovarius...    73   1e-11 
ref|ZP_01006405.1|  type II alternative RNA polymerase sigma...    73   1e-11 
ref|ZP_00531296.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|YP_804596.1|  DNA-directed RNA polymerase, sigma subunit...    73   1e-11 
ref|NP_833790.1|  sporulation sigma factor SigF [Bacillus ce...    73   1e-11 
gb|EAK36324.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAK34613.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAJ01011.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAI54443.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAI04784.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAD26547.1|  unknown [environmental sequence]                   73   1e-11 
gb|EAF93903.1|  unknown [environmental sequence]                   73   1e-11 
ref|YP_001007839.1|  RNA polymerase sigma factor RpoD [Yersi...    73   1e-11 
ref|ZP_01643866.1|  RNA polymerase, sigma 70 subunit, RpoD [...    73   1e-11 
ref|ZP_01630145.1|  RNA polymerase sigma factor [Nodularia s...    73   1e-11 
ref|ZP_01624006.1|  Sigma 28 (Flagella/Sporulation) [Lyngbya...    73   1e-11 
ref|ZP_01566708.1|  RNA polymerase, sigma 28 subunit [Burkho...    73   1e-11 
ref|YP_882772.1|  sigma factor MysA [Mycobacterium avium 104...    73   1e-11 
ref|YP_877879.1|  RNA polymerase sigma-F factor [Clostridium...    73   1e-11 
ref|ZP_01535047.1|  RNA polymerase, sigma 70 subunit, RpoD [...    73   1e-11 
ref|YP_802608.1|  RNA polymerase major s factor [Buchnera ap...    73   1e-11 
ref|YP_706753.1|  sigma factor, sigma 70 type, probable grou...    73   1e-11 
ref|ZP_01275883.1|  RNA polymerase sigma factor RpoD-like [M...    73   1e-11 
ref|YP_639806.1|  RNA polymerase, sigma 28 subunit [Mycobact...    73   1e-11 
ref|YP_639349.1|  RNA polymerase, sigma 28 subunit [Mycobact...    73   1e-11 
ref|ZP_01224130.1|  RNA polymerase sigma factor [marine gamm...    73   1e-11 
ref|ZP_01224429.1|  RNA polymerase sigma factor RpoD [marine...    73   1e-11 
ref|YP_953280.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    73   1e-11 
emb|CAA60113.1|  sigma 42 [Enterococcus faecalis]                  73   1e-11 
ref|NP_670834.1|  RNA polymerase sigma factor [Yersinia pest...    73   1e-11 
emb|CAC83737.1|  RNA polymerase sigma 70 [Rhodococcus fascians]    73   1e-11 
emb|CAA92648.1|  major sigma factor [Rhodobacter capsulatus]       73   1e-11 
ref|YP_524311.1|  sigma 28 [Rhodoferax ferrireducens T118] >...    73   1e-11 
ref|YP_887090.1|  sigma factor MysA [Mycobacterium smegmatis...    73   1e-11 
gb|AAA50747.1|  major sigma factor                                 73   1e-11 
gb|AAC44891.1|  sigma 70-type sigma factor SigA [Rhodobacter...    73   1e-11 
ref|YP_112675.1|  RNA polymerase sigma factor [Methylococcus...    73   1e-11 
ref|NP_829862.1|  RNA polymerase sigma factor [Chlamydophila...    73   1e-11 
ref|YP_290195.1|  RNA polymerase sigma factor [Thermobifida ...    73   1e-11 
ref|NP_297278.1|  RNA polymerase sigma factor [Chlamydia mur...    73   1e-11 
ref|YP_514929.1|  DNA-directed RNA polymerase sigma 70 [Chla...    73   1e-11 
ref|YP_453931.1|  RNA polymerase sigma-70 factor RpoD [Sodal...    73   1e-11 
ref|YP_395494.1|  DNA-directed RNA polymerase sigma factor, ...    73   1e-11 
ref|YP_220354.1|  RNA polymerase sigma factor [Chlamydophila...    73   1e-11 
ref|YP_119971.1|  RNA polymerase sigma factor [Nocardia farc...    73   1e-11 
ref|YP_048795.1|  RNA polymerase sigma factor [Erwinia carot...    73   1e-11 
ref|YP_032518.1|  RNA polymerase sigma factor [Bartonella qu...    73   1e-11 
ref|NP_931179.1|  RNA polymerase sigma factor [Photorhabdus ...    73   1e-11 
ref|NP_470827.1|  RNA polymerase sigma factor [Listeria inno...    73   1e-11 
ref|NP_301755.1|  RNA polymerase sigma factor [Mycobacterium...    73   1e-11 
ref|NP_072914.1|  RNA polymerase sigma factor [Mycoplasma ge...    73   1e-11 
dbj|BAA76622.1|  RpoT [Mycobacterium leprae]                       73   1e-11 
sp|P43344|RPOD_SERMA  RNA polymerase sigma factor rpoD (Sigm...    73   1e-11 
ref|ZP_01194611.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|ZP_01182177.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|ZP_01171934.1|  sporulation sigma factor SigF [Bacillus ...    73   1e-11 
ref|ZP_01042817.1|  DNA-directed RNA polymerase sigma 70 sub...    73   1e-11 
ref|ZP_00967301.1|  COG0568: DNA-directed RNA polymerase, si...    73   1e-11 
ref|ZP_00833342.1|  COG0568: DNA-directed RNA polymerase, si...    73   1e-11 
ref|ZP_00829660.1|  COG0568: DNA-directed RNA polymerase, si...    73   1e-11 
ref|ZP_00826131.1|  COG0568: DNA-directed RNA polymerase, si...    73   1e-11 
ref|ZP_00823529.1|  COG0568: DNA-directed RNA polymerase, si...    73   1e-11 
ref|YP_957943.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    73   1e-11 
ref|ZP_00519113.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    73   1e-11 
ref|ZP_00417007.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    73   1e-11 
ref|YP_724445.1|  RNA polymerase, sigma 28 subunit [Trichode...    73   1e-11 
ref|NP_404281.1|  RNA polymerase sigma factor [Yersinia pest...    73   1e-11 
ref|NP_464979.1|  RNA polymerase sigma factor [Listeria mono...    73   1e-11 
gb|EAK27843.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAI66733.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAI01762.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAE97746.1|  unknown [environmental sequence]                   72   2e-11 
ref|ZP_01648979.1|  RNA polymerase, sigma 28 subunit [Salini...    72   2e-11 
ref|ZP_01622338.1|  RNA polymerase sigma factor [Lyngbya sp....    72   2e-11 
ref|YP_887083.1|  sigma factor SigB [Mycobacterium smegmatis...    72   2e-11 
ref|ZP_01455507.1|  sigma-70 region 2 [Thermoanaerobacter et...    72   2e-11 
ref|YP_696447.1|  RNA polymerase sigma-G factor [Clostridium...    72   2e-11 
ref|YP_665236.1|  RNA polymerase sigma-70 factor [Helicobact...    72   2e-11 
ref|ZP_01355206.1|  RNA polymerase sigma factor RpoD-like [C...    72   2e-11 
ref|NP_823620.1|  RNA polymerase sigma factor [Streptomyces ...    72   2e-11 
emb|CAA53564.1|  sigma factor (RNA polymerase subunit) [Stre...    72   2e-11 
ref|YP_199237.1|  RNA polymerase sigma factor [Xanthomonas o...    72   2e-11 
gb|AAF05319.1|AF178851_2  sigma factor 38 [Pseudomonas putida]     72   2e-11 
gb|AAA85644.1|  sigma factor MysB                                  72   2e-11 
ref|YP_429713.1|  sigma 28 (Flagella/Sporulation) [Moorella ...    72   2e-11 
ref|YP_194063.1|  RNA polymerase sigma factor [Lactobacillus...    72   2e-11 
ref|NP_965171.1|  RNA polymerase sigma factor [Lactobacillus...    72   2e-11 
ref|NP_294640.1|  RNA polymerase sigma-A factor [Deinococcus...    72   2e-11 
ref|YP_449588.1|  RNA polymerase sigma-70 factor [Xanthomona...    72   2e-11 
ref|YP_365643.1|  RNA polymerase sigma factor [Xanthomonas c...    72   2e-11 
ref|YP_119987.1|  RNA polymerase sigma factor [Nocardia farc...    72   2e-11 
ref|NP_950880.1|  DNA-directed RNA polymerase sigma subunit ...    72   2e-11 
ref|NP_925614.1|  sigma factor SigF [Gloeobacter violaceus P...    72   2e-11 
ref|NP_869375.1|  RNA polymerase sigma factor rpoD [Rhodopir...    72   2e-11 
pdb|1L9U|H  Chain H, Thermus Aquaticus Rna Polymerase Holoen...    72   2e-11 
gb|AAA26763.1|  principal sigma-like factor >gi|450078|prf||...    72   2e-11 
ref|NP_692865.1|  RNA polymerase sigma factor [Oceanobacillu...    72   2e-11 
sp|P77951|HRDB_STRGR  RNA polymerase principal sigma factor ...    72   2e-11 
emb|CAA37175.1|  unnamed protein product [Streptomyces coeli...    72   2e-11 
sp|P52322|RPOD_MICAE  RNA polymerase sigma factor rpoD1 >gi|...    72   2e-11 
ref|NP_639081.1|  RNA polymerase sigma factor [Xanthomonas c...    72   2e-11 
ref|NP_629943.1|  RNA polymerase sigma factor [Streptomyces ...    72   2e-11 
pdb|1L9Z|H  Chain H, Thermus Aquaticus Rna Polymerase Holoen...    72   2e-11 
ref|NP_644094.1|  RNA polymerase sigma factor [Xanthomonas a...    72   2e-11 
ref|NP_562677.1|  sporulation sigma factor SigG [Clostridium...    72   2e-11 
prf||2119302A  sigma factor                                        72   2e-11 
ref|ZP_01185289.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    72   2e-11 
ref|ZP_01114422.1|  RNA polymerase sigma factor [Reinekea sp...    72   2e-11 
ref|ZP_01103530.1|  RNA polymerase sigma-38 subunit [gamma p...    72   2e-11 
ref|ZP_01088572.1|  RNA polymerase sigma factor rpoS [Blasto...    72   2e-11 
ref|ZP_00977602.1|  COG0568: DNA-directed RNA polymerase, si...    72   2e-11 
ref|ZP_00907947.1|  Sigma-70 factor [Clostridium beijerincki...    72   2e-11 
ref|YP_623107.1|  RNA polymerase, sigma 28 subunit [Burkhold...    72   2e-11 
ref|ZP_00618470.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    72   2e-11 
ref|YP_723887.1|  RNA polymerase, sigma 28 subunit [Trichode...    72   2e-11 
ref|ZP_00109570.1|  COG0568: DNA-directed RNA polymerase, si...    72   2e-11 
ref|YP_814923.1|  DNA-directed RNA polymerase, sigma subunit...    72   2e-11 
ref|ZP_00111455.1|  COG1191: DNA-directed RNA polymerase spe...    72   2e-11 
gb|EAK42997.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAD43624.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAG63618.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAG42959.1|  unknown [environmental sequence]                   72   2e-11 
gb|EAG22501.1|  unknown [environmental sequence]                   72   2e-11 
ref|ZP_01667054.1|  RNA polymerase, sigma 28 subunit, FliA/W...    72   2e-11 
ref|ZP_01589942.1|  RNA polymerase, sigma 70 subunit, RpoD [...    72   2e-11 
emb|CAJ67606.1|  RNA polymerase sigma-F factor [Clostridium ...    72   2e-11 
ref|ZP_01449062.1|  RNA polymerase sigma factor [alpha prote...    72   2e-11 
emb|CAL34114.1|  RNA polymerase sigma factor rpoD [Enterobac...    72   2e-11 
ref|ZP_01275891.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    72   2e-11 
ref|YP_542483.1|  RNA polymerase, sigma(70) factor; regulati...    72   2e-11 
ref|ZP_01635998.1|  hypothetical protein CdifQ_03000853 [Clo...    72   2e-11 
ref|NP_790384.1|  RNA polymerase sigma factor [Pseudomonas s...    72   2e-11 
gb|AAB60181.1|  RNA polymerase sigma-subunit                       72   2e-11 
gb|AAA24601.1|  RNA polymerase sigma-subunit                       72   2e-11 
ref|YP_404746.1|  RNA polymerase, sigma(70) factor [Shigella...    72   2e-11 
ref|YP_374318.1|  RNA polymerase sigma-70 factor [Pelodictyo...    72   2e-11 
ref|YP_272918.1|  RNA polymerase sigma factor RpoD [Pseudomo...    72   2e-11 
ref|YP_218145.1|  RNA polymerase sigma factor [Salmonella en...    72   2e-11 
ref|NP_838586.1|  RNA polymerase sigma factor [Shigella flex...    72   2e-11 
ref|YP_237709.1|  RNA polymerase sigma factor [Pseudomonas s...    72   2e-11 
ref|YP_288928.1|  sigma-70 factor [Thermobifida fusca YX] >g...    72   2e-11 
ref|YP_350877.1|  RNA polymerase sigma factor [Pseudomonas f...    72   2e-11 
ref|NP_220132.1|  RNA polymerase sigma factor [Chlamydia tra...    72   2e-11 
gb|AAB07553.1|  SigC [Chloroflexus aurantiacus]                    72   2e-11 
ref|YP_152226.1|  RNA polymerase sigma factor [Salmonella en...    72   2e-11 
ref|NP_755692.1|  RpoD protein [Escherichia coli CFT073] >gi...    72   2e-11 
ref|NP_172330.1|  SIGB (SIGMA FACTOR B); DNA binding / DNA-d...    72   2e-11 
ref|NP_417539.1|  RNA polymerase sigma factor [Escherichia c...    72   2e-11 
ref|YP_262722.1|  RNA polymerase sigma factor [Pseudomonas f...    72   2e-11 
ref|NP_457602.1|  RNA polymerase sigma factor [Salmonella en...    72   2e-11 
ref|NP_462126.2|  RNA polymerase sigma factor [Salmonella ty...    72   2e-11 
dbj|BAA25730.1|  SigA [Bacillus sp.]                               72   2e-11 
ref|NP_681527.1|  sigma factor SigF [Thermosynechococcus elo...    72   2e-11 
dbj|BAB21618.1|  PpSIG2 [Physcomitrella patens] >gi|14669832...    72   2e-11 
ref|ZP_01132956.1|  sigma S (sigma 38) factor of RNA polymer...    72   2e-11 
ref|ZP_01081346.1|  Type II alternative RNA polymerase sigma...    72   2e-11 
ref|ZP_01039614.1|  RNA polymerase sigma factor [Erythrobact...    72   2e-11 
ref|YP_989245.1|  RNA polymerase sigma factor RpoD [Bartonel...    72   2e-11 
ref|ZP_00707091.1|  COG0568: DNA-directed RNA polymerase, si...    72   2e-11 
ref|ZP_00779110.1|  Sigma-70 region 2:Sigma-70 region 4 [The...    72   2e-11 
ref|ZP_00696210.1|  COG0568: DNA-directed RNA polymerase, si...    72   2e-11 
ref|NP_289642.1|  RNA polymerase sigma factor [Escherichia c...    72   2e-11 
gb|EAJ12972.1|  unknown [environmental sequence]                   72   3e-11 
gb|EAI74372.1|  unknown [environmental sequence]                   72   3e-11 
gb|EAH90910.1|  unknown [environmental sequence]                   72   3e-11 
gb|EAE07367.1|  unknown [environmental sequence]                   72   3e-11 
ref|ZP_01685613.1|  hypothetical protein MtubF_02002767 [Myc...    72   3e-11 
ref|YP_947521.1|  RNA polymerase sigma (70) factor RpoD [Art...    72   3e-11 
ref|ZP_01594962.1|  RNA polymerase, sigma 70 subunit, RpoD [...    72   3e-11 
ref|ZP_01563106.1|  RNA polymerase, sigma 38 subunit, RpoS [...    72   3e-11 
ref|YP_906998.1|  RNA polymerase sigma factor SigA [Mycobact...    72   3e-11 
ref|ZP_01528206.1|  RNA polymerase, sigma 70 subunit, RpoD [...    72   3e-11 
ref|YP_806719.1|  DNA-directed RNA polymerase, sigma subunit...    72   3e-11 
ref|YP_751674.1|  RNA polymerase, sigma 70 subunit, RpoD [Sh...    72   3e-11 
ref|ZP_01436523.1|  sigma 70 (RpoD) [Shewanella baltica OS19...    72   3e-11 
ref|YP_739031.1|  RNA polymerase, sigma 70 subunit, RpoD [Sh...    72   3e-11 
ref|YP_699047.1|  RNA polymerase sigma-G factor [Clostridium...    72   3e-11 
ref|YP_609662.1|  sigma S (sigma 38) factor of RNA polymeras...    72   3e-11 
ref|ZP_01306517.1|  RNA polymerase sigma-A factor [Oceanobac...    72   3e-11 
ref|ZP_01294625.1|  hypothetical protein PaerP_01003526 [Pse...    72   3e-11 
ref|ZP_01262007.1|  DNA-directed RNA polymerase, sigma subun...    72   3e-11 
gb|AAO31615.1|  RNA polymerase subunit sigma factor S [Vibri...    72   3e-11 
gb|AAB69385.1|  sigma factor 2 [Arabidopsis thaliana]              72   3e-11 
emb|CAA50594.1|  major sigma factor [Lactococcus lactis]           72   3e-11 
ref|YP_563836.1|  RNA polymerase sigma factor RpoD-like prot...    72   3e-11 
ref|YP_055742.1|  RNA polymerase sigma factor [Propionibacte...    72   3e-11 
gb|AAA26764.1|  principal sigma-like factor                        72   3e-11 
ref|NP_791390.1|  RNA polymerase sigma factor [Pseudomonas s...    72   3e-11 
ref|NP_760484.1|  DNA-directed RNA polymerase, sigma subunit...    72   3e-11 
ref|YP_295959.1|  Sigma-70 region 1.2 [Ralstonia eutropha JM...    72   3e-11 
ref|YP_156581.1|  DNA-directed RNA polymerase sigma 70 subun...    72   3e-11 
ref|YP_155135.1|  DNA-directed RNA polymerase sigma 38 subun...    72   3e-11 
ref|NP_994260.1|  RNA polymerase sigma factor [Yersinia pest...    72   3e-11 
gb|AAA81640.1|  sigma factor >gi|1072019|gb|AAA81641.1| sigm...    72   3e-11 
ref|YP_234463.1|  RNA polymerase sigma factor [Pseudomonas s...    72   3e-11 
ref|NP_660412.1|  RNA polymerase sigma factor [Buchnera aphi...    72   3e-11 
ref|NP_716906.1|  RNA polymerase sigma-70 factor [Shewanella...    72   3e-11 
ref|YP_173055.1|  group2 RNA polymerase sigma factor RpoD2 [...    72   3e-11 
ref|NP_935601.1|  DNA-directed RNA polymerase, sigma subunit...    72   3e-11 
ref|NP_217219.1|  RNA polymerase sigma factor [Mycobacterium...    72   3e-11 
ref|NP_785497.1|  RNA polymerase sigma factor [Lactobacillus...    72   3e-11 
ref|NP_239892.1|  RNA polymerase sigma factor [Buchnera aphi...    72   3e-11 
sp|P58290|RPOD_LACLC  RNA polymerase sigma factor rpoD (Sigm...    72   3e-11 
ref|ZP_01124646.1|  Type II alternative RNA polymerase sigma...    72   3e-11 
ref|YP_735036.1|  RNA polymerase, sigma 70 subunit, RpoD [Sh...    72   3e-11 
ref|YP_870717.1|  RNA polymerase, sigma 70 subunit, RpoD [Sh...    72   3e-11 
ref|ZP_00815892.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    72   3e-11 
ref|ZP_01473518.1|  hypothetical protein VEx2w_02003926 [Vib...    72   3e-11 
ref|YP_924152.1|  RNA polymerase sigma factor RpoD [Nocardio...    72   3e-11 
ref|YP_749751.1|  RNA polymerase, sigma 28 subunit [Shewanel...    72   3e-11 
ref|YP_831111.1|  RNA polymerase, sigma 28 subunit [Arthroba...    72   3e-11 
ref|ZP_00378793.1|  COG0568: DNA-directed RNA polymerase, si...    72   3e-11 
gb|EAK29113.1|  unknown [environmental sequence]                   71   4e-11 
gb|EAH37548.1|  unknown [environmental sequence]                   71   4e-11 
gb|EAG23680.1|  unknown [environmental sequence]                   71   4e-11 
ref|ZP_01640561.1|  RNA polymerase, sigma 28 subunit [Pseudo...    71   4e-11 
ref|ZP_01514354.1|  sigma-70 region 3 [Chloroflexus aggregan...    71   4e-11 
ref|ZP_01470632.1|  Type II alternative RNA polymerase sigma...    71   4e-11 
ref|ZP_01219923.1|  RNA polymerase sigma factor [Photobacter...    71   4e-11 
emb|CAA62840.1|  starvation sigma factor [Pseudomonas putida]      71   4e-11 
emb|CAA71796.1|  RNA polymerase [Renibacterium salmoninarum]       71   4e-11 
emb|CAB46191.1|  RNA polymerase sigma factor [Pseudomonas pu...    71   4e-11 
gb|AAK09363.1|AF321124_1  RpoS [Vibrio harveyi]                    71   4e-11 
ref|YP_275947.1|  RNA polymerase sigma factor RpoS [Pseudomo...    71   4e-11 
gb|AAV85439.1|  RpoS [Listonella anguillarum] >gi|56267935|g...    71   4e-11 
ref|YP_115383.1|  RNA polymerase sigma-70 factor [Methylococ...    71   4e-11 
ref|NP_961754.1|  RNA polymerase sigma factor [Mycobacterium...    71   4e-11 
ref|YP_128663.1|  RNA polymerase sigma factor [Photobacteriu...    71   4e-11 
ref|YP_007176.1|  RNA polymerase sigma factor [Candidatus Pr...    71   4e-11 
ref|NP_939758.1|  RNA polymerase sigma factor [Corynebacteri...    71   4e-11 
ref|NP_923149.1|  group 2 sigma 70-type sigma factor [Gloeob...    71   4e-11 
ref|NP_252312.1|  sigma factor RpoS [Pseudomonas aeruginosa ...    71   4e-11 
pir||JC1397  transcription initiation factor sigma, major - ...    71   4e-11 
pir||RNCW7H  transcription initiation factor sigma 70 - Chla...    71   4e-11 
sp|Q04506|RPOD_LACLA  RNA polymerase sigma factor rpoD (Sigm...    71   4e-11 
prf||1908232B  RNA polymerase:SUBUNIT=sigma factor                 71   4e-11 
ref|NP_266709.1|  RNA polymerase sigma factor [Lactococcus l...    71   4e-11 
ref|NP_441031.1|  RNA polymerase sigma factor [Synechocystis...    71   4e-11 
ref|ZP_01189033.1|  Sigma-70 region 2:Sigma-70 region 4 [Hal...    71   4e-11 
ref|ZP_00994823.1|  RNA polymerase sigma factor [Janibacter ...    71   4e-11 
ref|ZP_00973721.1|  COG0568: DNA-directed RNA polymerase, si...    71   4e-11 
ref|ZP_00423510.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    71   4e-11 
ref|YP_603947.1|  RNA polymerase, sigma 28 subunit [Deinococ...    71   4e-11 
ref|YP_808568.1|  DNA-directed RNA polymerase, sigma subunit...    71   4e-11 
ref|ZP_01367054.1|  hypothetical protein PaerPA_01004205 [Ps...    71   4e-11 
ref|NP_743780.1|  RNA polymerase sigma factor [Pseudomonas p...    71   4e-11 
gb|EAK40999.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAI33966.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAG53225.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAF98978.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAE77164.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAE20388.1|  unknown [environmental sequence]                   71   5e-11 
gb|EAY40664.1|  RNA polymerase sigma factor RpoS [Vibrio cho...    71   5e-11 
ref|ZP_01674608.1|  sigma 70 (RpoD) [Candidatus Desulfococcu...    71   5e-11 
ref|ZP_01640750.1|  RNA polymerase, sigma 70 subunit, RpoD [...    71   5e-11 
ref|ZP_01632741.1|  Sigma 28 (Flagella/Sporulation) [Nodular...    71   5e-11 
ref|ZP_01603717.1|  RNA polymerase, sigma 70 subunit, RpoD f...    71   5e-11 
ref|YP_903375.1|  RNA polymerase, sigma 70 subunit, RpoD [Ca...    71   5e-11 
ref|YP_882780.1|  sigma factor SigB [Mycobacterium avium 104...    71   5e-11 
ref|ZP_01540905.1|  RNA polymerase, sigma 70 subunit, RpoD [...    71   5e-11 
ref|ZP_01450176.1|  RNA polymerase sigma factor [alpha prote...    71   5e-11 
ref|YP_693783.1|  RNA polymerase sigma factor RpoD [Alcanivo...    71   5e-11 
ref|YP_606185.1|  sigma D (sigma 70) factor of RNA polymeras...    71   5e-11 
ref|ZP_01257565.1|  sigma factor FliA (Sigma-28 group, flage...    71   5e-11 
gb|AAT81163.1|  principal sigma factor [Streptomyces ansochr...    71   5e-11 
gb|AAQ14856.1|  RpoD [Pseudomonas fluorescens]                     71   5e-11 
gb|AAP97086.1|  RNA polymerase sigma factor [Pseudomonas chl...    71   5e-11 
emb|CAA07705.1|  sigma-70 factor [Pseudomonas tolaasii]            71   5e-11 
emb|CAA89984.1|  SigA sigma factor [Corynebacterium glutamicum]    71   5e-11 
emb|CAB60192.1|  putative sigma-like transcription factor [A...    71   5e-11 
emb|CAC83730.1|  sigma factor [Rhodococcus fascians]               71   5e-11 
gb|AAK15630.1|AF326348_2  RNA polymerase major sigma subunit...    71   5e-11 
gb|AAN12882.1|  principal sigma factor RpoD [Bifidobacterium...    71   5e-11 
gb|AAC44535.1|  sigma factor MytB                                  71   5e-11 
gb|AAT46075.1|  RNA polymerase sigma factor [Pseudomonas chl...    71   5e-11 
ref|NP_961760.1|  RNA polymerase sigma factor [Mycobacterium...    71   5e-11 
ref|YP_346864.1|  Sigma-28 (Flagella/Sporulation) [Pseudomon...    71   5e-11 
gb|AAB07555.1|  SigA [Chlorobium tepidum]                          71   5e-11 
ref|NP_878368.1|  RNA polymerase sigma-70 factor [Candidatus...    71   5e-11 
ref|NP_348322.1|  sporulation sigma factor SigG [Clostridium...    71   5e-11 
ref|NP_565856.1|  SIGF (RNA POLYMERASE SIGMA-70 FACTOR); DNA...    71   5e-11 
ref|NP_217226.1|  RNA polymerase sigma factor [Mycobacterium...    71   5e-11 
ref|NP_692760.1|  sporulation sigma factor SigF [Oceanobacil...    71   5e-11 
ref|YP_743346.1|  RNA polymerase, sigma 70 subunit, RpoD [Al...    71   5e-11 
ref|ZP_00835920.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    71   5e-11 
ref|ZP_01685618.1|  hypothetical protein MtubF_02002773 [Myc...    71   5e-11 
ref|ZP_00755341.1|  COG0568: DNA-directed RNA polymerase, si...    71   5e-11 
ref|ZP_01482751.1|  hypothetical protein VchoR_02001331 [Vib...    71   5e-11 
ref|ZP_01485271.1|  hypothetical protein VchoV5_02002117 [Vi...    71   5e-11 
ref|YP_922594.1|  sigma-70 region 4 domain protein [Nocardio...    71   5e-11 
ref|ZP_00110428.1|  COG0568: DNA-directed RNA polymerase, si...    71   5e-11 
ref|NP_742554.1|  RNA polymerase sigma factor [Pseudomonas p...    71   5e-11 
ref|NP_230185.1|  RNA polymerase sigma-38 factor [Vibrio cho...    71   5e-11 
ref|YP_001016184.1|  Type II alternative RNA polymerase sigm...    70   7e-11 
gb|EAX32404.1|  RNA polymerase sigma factor RpoD [Coxiella b...    70   7e-11 
ref|ZP_01601898.1|  RNA polymerase, sigma 70 subunit, RpoD f...    70   7e-11 
ref|YP_878334.1|  Specialized DNA-dependent RNA polymerase s...    70   7e-11 
gb|ABK15514.1|  sigma factor [Pseudomonas sp. KL28]                70   7e-11 
ref|ZP_01428488.1|  sigma-70 region 2 [Salinispora tropica C...    70   7e-11 
ref|ZP_01298977.1|  hypothetical protein CburD_01001162 [Cox...    70   7e-11 
ref|ZP_01307276.1|  nonessential primary sigma factor [Ocean...    70   7e-11 
ref|YP_953270.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    70   7e-11 
gb|AAL11450.1|  RNA polymerase sigma-70 subunit [Serratia pl...    70   7e-11 
ref|YP_562213.1|  RNA polymerase sigma factor RpoS [Shewanel...    70   7e-11 
ref|YP_535802.1|  RNA polymerase sigma factor [Lactobacillus...    70   7e-11 
ref|YP_471497.1|  RNA polymerase sigma factor protein (sigma...    70   7e-11 
gb|AAC45155.1|  RpoD [Xanthomonas campestris pv. campestris]       70   7e-11 
ref|YP_322422.1|  RNA polymerase sigma factor [Anabaena vari...    70   7e-11 
ref|NP_903432.1|  RNA polymerase sigma factor [Chromobacteri...    70   7e-11 
ref|NP_820579.1|  RNA polymerase sigma factor RpoD [Coxiella...    70   7e-11 
ref|NP_778817.1|  RNA polymerase sigma factor [Xylella fasti...    70   7e-11 
ref|YP_171663.1|  group2 RNA polymerase sigma factor RpoD4 [...    70   7e-11 
ref|YP_032741.1|  RNA polymerase sigma factor [Bartonella qu...    70   7e-11 
sp|Q87DT7|RPOD_XYLFT  RNA polymerase sigma factor rpoD (Sigm...    70   7e-11 
ref|NP_893960.1|  Type II alternative RNA polymerase sigma f...    70   7e-11 
ref|NP_298639.1|  RNA polymerase sigma factor [Xylella fasti...    70   7e-11 
dbj|BAA86958.1|  group 2 sigma factor RpoD4 [Synechococcus s...    70   7e-11 
dbj|BAA21674.1|  rpoS sigma factor [Pseudomonas tolaasii]          70   7e-11 
ref|ZP_01126247.1|  RNA polymerase sigma factor [Nitrococcus...    70   7e-11 
ref|ZP_01079273.1|  Putative type II alternative RNA polymer...    70   7e-11 
ref|ZP_01079093.1|  type II alternative RNA polymerase sigma...    70   7e-11 
ref|ZP_01066395.1|  RNA polymerase sigma factor [Vibrio sp. ...    70   7e-11 
ref|ZP_00993293.1|  RNA polymerase sigma factor [Vibrio sple...    70   7e-11 
ref|YP_660618.1|  RNA polymerase, sigma 70 subunit, RpoD [Ps...    70   7e-11 
ref|ZP_00511553.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    70   7e-11 
ref|YP_912464.1|  RNA polymerase, sigma 32 subunit, RpoH [Ch...    70   7e-11 
ref|ZP_00651142.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    70   7e-11 
ref|ZP_00681993.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    70   7e-11 
gb|EAJ39653.1|  unknown [environmental sequence]                   70   9e-11 
gb|EAD68783.1|  unknown [environmental sequence]                   70   9e-11 
gb|EAD60678.1|  unknown [environmental sequence]                   70   9e-11 
gb|EAA94167.1|  unknown [environmental sequence]                   70   9e-11 
ref|YP_909874.1|  RNA polymerase principal sigma factor; sig...    70   9e-11 
ref|ZP_01356012.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    70   9e-11 
ref|ZP_01236576.1|  RNA polymerase sigma factor [Vibrio angu...    70   9e-11 
ref|YP_477382.1|  RNA polymerase sigma factor [Synechococcus...    70   9e-11 
ref|YP_175186.1|  RNA polymerase sigma factor [Bacillus clau...    70   9e-11 
emb|CAD20832.1|  sigma factor [Spinacia oleracea]                  70   9e-11 
ref|NP_796783.1|  RNA polymerase sigma factor [Vibrio paraha...    70   9e-11 
dbj|BAB87264.1|  RNA polymerase sigma factor [Cyanophora par...    70   9e-11 
ref|NP_110040.1|  RNA polymerase sigma factor [Mycoplasma pn...    70   9e-11 
ref|NP_487840.1|  RNA polymerase sigma factor [Nostoc sp. PC...    70   9e-11 
ref|NP_626707.1|  RNA polymerase principal sigma factor [Str...    70   9e-11 
ref|NP_301750.1|  RNA polymerase sigma factor [Mycobacterium...    70   9e-11 
ref|ZP_01161990.1|  RNA polymerase sigma factor [Photobacter...    70   9e-11 
ref|ZP_01133048.1|  RNA polymerase sigma factor rpoD (Sigma-...    70   9e-11 
ref|ZP_01124974.1|  possible type II alternative RNA polymer...    70   9e-11 
ref|ZP_01113872.1|  RNA polymerase sigma factor RpoS [Reinek...    70   9e-11 
ref|ZP_00907908.1|  RNA polymerase sigma-F factor [Clostridi...    70   9e-11 
ref|ZP_00884565.1|  DNA-directed RNA polymerase sporulation-...    70   9e-11 
ref|YP_742659.1|  RNA polymerase, sigma 28 subunit [Alkalili...    70   9e-11 
ref|YP_924169.1|  sigma-70 region 3 domain protein [Nocardio...    70   9e-11 
ref|ZP_00582559.1|  Sigma-70 region 2:Sigma-70 region 4 [She...    70   9e-11 
ref|ZP_00567895.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    70   9e-11 
ref|NP_696589.1|  RNA polymerase sigma factor [Bifidobacteri...    70   9e-11 
gb|EAJ49364.1|  unknown [environmental sequence]                   70   1e-10 
gb|EAI61416.1|  unknown [environmental sequence]                   70   1e-10 
gb|EAY41706.1|  RNA polymerase sigma factor RpoD [Vibrio cho...    70   1e-10 
gb|EAY33814.1|  RNA polymerase sigma factor RpoD [Vibrio cho...    70   1e-10 
ref|YP_001015902.1|  Type II alternative RNA polymerase sigm...    70   1e-10 
ref|ZP_01678905.1|  RNA polymerase sigma factor RpoD [Vibrio...    70   1e-10 
emb|CAL53378.1|  SigA (ISS) [Ostreococcus tauri]                   70   1e-10 
ref|ZP_01433069.1|  sigma 32 (RpoH) [Shewanella baltica OS19...    70   1e-10 
gb|AAL37943.1|AF359562_4  SigB [Staphylococcus epidermidis]        70   1e-10 
ref|NP_759619.1|  RNA polymerase sigma factor [Vibrio vulnif...    70   1e-10 
ref|YP_382879.1|  possible type II alternative RNA polymeras...    70   1e-10 
ref|YP_377522.1|  type II alternative RNA polymerase sigma f...    70   1e-10 
ref|YP_378703.1|  RNA polymerase sigma factor rpoD (Sigma-A)...    70   1e-10 
ref|YP_292400.1|  type II alternative RNA polymerase sigma f...    70   1e-10 
ref|YP_078927.1|  sporulation sigma factor SigG [Bacillus li...    70   1e-10 
ref|NP_765223.1|  sigma factor B [Staphylococcus epidermidis...    70   1e-10 
gb|AAA81642.1|  sigma factor                                       70   1e-10 
ref|NP_933354.1|  RNA polymerase sigma factor [Vibrio vulnif...    70   1e-10 
ref|NP_631334.1|  RNA polymerase sigma factor [Streptomyces ...    70   1e-10 
ref|ZP_01102321.1|  RNA polymerase sigma factor rpoD [gamma ...    70   1e-10 
ref|ZP_01043172.1|  DNA-directed RNA polymerase sigma 38 sub...    70   1e-10 
ref|ZP_01479271.1|  hypothetical protein VchoM_02001518 [Vib...    70   1e-10 
ref|ZP_00755324.1|  COG0568: DNA-directed RNA polymerase, si...    70   1e-10 
ref|ZP_01481074.1|  hypothetical protein VchoR_02003063 [Vib...    70   1e-10 
ref|ZP_01485024.1|  hypothetical protein VchoV5_02002385 [Vi...    70   1e-10 
ref|ZP_00660908.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    70   1e-10 
ref|NP_230168.1|  RNA polymerase sigma factor [Vibrio choler...    70   1e-10 
gb|EAI52439.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAB43824.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAE86100.1|  unknown [environmental sequence]                   69   2e-10 
ref|ZP_01667560.1|  RNA polymerase, sigma 28 subunit, FliA/W...    69   2e-10 
ref|ZP_01615218.1|  RNA polymerase sigma factor [marine gamm...    69   2e-10 
ref|ZP_01614893.1|  RNA polymerase sigma factor rpoD (Sigma-...    69   2e-10 
ref|YP_770178.1|  putative rpoH sigma factor [Rhizobium legu...    69   2e-10 
ref|YP_729975.1|  Type II alternative RNA polymerase sigma f...    69   2e-10 
ref|ZP_01385203.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    69   2e-10 
ref|ZP_01261628.1|  RNA polymerase sigma factor [Vibrio algi...    69   2e-10 
ref|NP_826856.1|  RNA polymerase sigma factor [Streptomyces ...    69   2e-10 
emb|CAD57977.1|  RNA polymerase sigma factor [Pseudomonas ol...    69   2e-10 
ref|YP_205637.1|  RNA polymerase sigma factor [Vibrio fische...    69   2e-10 
gb|ABC96760.1|  putative RNA polymerase sigma factor [Rhizob...    69   2e-10 
ref|NP_347858.1|  RNA polymerase sigma factor [Clostridium a...    69   2e-10 
ref|YP_338890.1|  RNA polymerase sigma factor [Pseudoalterom...    69   2e-10 
ref|YP_250869.1|  RNA polymerase sigma factor A [Corynebacte...    69   2e-10 
dbj|BAA23365.1|  sigma factor [Vibrio cholerae]                    69   2e-10 
ref|ZP_01172496.1|  sporulation sigma factor SigG [Bacillus ...    69   2e-10 
ref|ZP_01112259.1|  RNA polymerase sigma factor [Alteromonas...    69   2e-10 
ref|ZP_01083397.1|  Putative type II alternative RNA polymer...    69   2e-10 
ref|ZP_01474079.1|  hypothetical protein VEx2w_02003329 [Vib...    69   2e-10 
ref|ZP_00054445.2|  COG0568: DNA-directed RNA polymerase, si...    69   2e-10 
gb|EAK09624.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAI72659.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAH71359.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAH55986.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAC51666.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAE32793.1|  unknown [environmental sequence]                   69   2e-10 
gb|EAD98071.1|  unknown [environmental sequence]                   69   2e-10 
ref|YP_001017967.1|  Type II alternative RNA polymerase sigm...    69   2e-10 
ref|ZP_01652783.1|  RNA polymerase sigma factor RpoD [Thermo...    69   2e-10 
ref|ZP_01627048.1|  putative transcriptional regulator, Fis ...    69   2e-10 
ref|ZP_01541830.1|  RNA polymerase sigma factor RpoH [Shewan...    69   2e-10 
ref|ZP_01542995.1|  RNA polymerase, sigma 28 subunit [Shewan...    69   2e-10 
ref|YP_855378.1|  RNA polymerase sigma factor RpoD [Aeromona...    69   2e-10 
ref|YP_942129.1|  RNA polymerase sigma-38 factor RpoS [Psych...    69   2e-10 
ref|ZP_01274588.1|  RNA polymerase sigma factor RpoD-like [L...    69   2e-10 
ref|YP_552774.1|  Sigma 70 (RpoD) [Burkholderia xenovorans L...    69   2e-10 
ref|NP_822326.1|  RNA polymerase sigma factor [Streptomyces ...    69   2e-10 
gb|AAD17854.1|  sigma factor SIG2A; ZmSIG2A [Zea mays]             69   2e-10 
ref|YP_181295.1|  RNA polymerase sigma factor RpoD [Dehaloco...    69   2e-10 
gb|AAC44889.2|  sigma 70-type sigma factor SigA [Thermotoga ...    69   2e-10 
ref|YP_380427.1|  type II alternative RNA polymerase sigma f...    69   2e-10 
ref|YP_342117.1|  RpoD [Nitrosococcus oceani ATCC 19707] >gi...    69   2e-10 
ref|YP_146981.1|  sporulation sigma factor SigG [Geobacillus...    69   2e-10 
ref|YP_034217.1|  RNA polymerase sigma factor [Bartonella he...    69   2e-10 
ref|NP_939765.1|  RNA polymerase sigma factor [Corynebacteri...    69   2e-10 
ref|NP_924280.1|  RNA polymerase sigma factor [Gloeobacter v...    69   2e-10 
ref|NP_229250.1|  RNA polymerase sigma-A factor [Thermotoga ...    69   2e-10 
ref|NP_738421.1|  RNA polymerase sigma factor [Corynebacteri...    69   2e-10 
ref|NP_871471.1|  hypothetical protein WGLp468 [Wigglesworth...    69   2e-10 
ref|ZP_01163909.1|  Sigma-70 factor [Lactobacillus reuteri J...    69   2e-10 
ref|ZP_01064665.1|  DNA-directed RNA polymerase, sigma subun...    69   2e-10 
ref|ZP_00991384.1|  DNA-directed RNA polymerase, sigma subun...    69   2e-10 
ref|YP_586792.1|  sigma 70 (RpoD) [Ralstonia metallidurans C...    69   2e-10 
gb|EAH25508.1|  unknown [environmental sequence]                   69   3e-10 
ref|ZP_01612015.1|  sigma S (sigma 38) factor of RNA polymer...    69   3e-10 
ref|YP_907005.1|  RNA polymerase sigma factor SigB [Mycobact...    69   3e-10 
emb|CAB83106.1|  sigma factor 2 [Sinapis alba]                     69   3e-10 
emb|CAA49185.1|  vegetative sigma factor [Agrobacterium tume...    69   3e-10 
emb|CAA37172.1|  unnamed protein product [Streptomyces coeli...    69   3e-10 
ref|YP_477706.1|  RNA polymerase sigma-70 factor family [Syn...    69   3e-10 
ref|YP_062477.1|  RNA polymerase, sigma-70 family factor [Le...    69   3e-10 
ref|YP_381202.1|  type II alternative RNA polymerase sigma f...    69   3e-10 
ref|YP_198223.1|  DNA-directed RNA polymerase sigma 70 subun...    69   3e-10 
ref|YP_289468.1|  RNA polymerase sigma factor [Thermobifida ...    69   3e-10 
emb|CAD20831.2|  sigma factor [Spinacia oleracea]                  69   3e-10 
ref|YP_307630.1|  RNA polymerase, sigma factor [Dehalococcoi...    69   3e-10 
ref|YP_222427.1|  RNA polymerase sigma factor [Brucella abor...    69   3e-10 
gb|AAF73147.1|AF149031_2  sigma factor RpoH2 [Sinorhizobium ...    69   3e-10 
ref|NP_387362.1|  RNA polymerase sigma factor [Sinorhizobium...    69   3e-10 
sp|P52327|RPOD_PSEPU  RNA polymerase sigma factor rpoD (Sigm...    69   3e-10 
ref|ZP_01193395.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    69   3e-10 
ref|ZP_01148607.1|  RNA polymerase sigma factor similar to B...    69   3e-10 
ref|ZP_01084517.1|  type II alternative RNA polymerase sigma...    69   3e-10 
ref|ZP_01080608.1|  Type II alternative RNA polymerase sigma...    69   3e-10 
ref|YP_965268.1|  RNA polymerase, sigma 32 subunit, RpoH [Sh...    69   3e-10 
ref|ZP_00877819.1|  COG0568: DNA-directed RNA polymerase, si...    69   3e-10 
ref|ZP_00814198.1|  Sigma-70 region 2:Sigma-70 region 4 [She...    69   3e-10 
ref|ZP_00588141.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    69   3e-10 
ref|ZP_00108472.1|  COG0568: DNA-directed RNA polymerase, si...    69   3e-10 
gb|EAJ84199.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAI95856.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAI84080.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAG54198.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAC93756.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAF97554.1|  unknown [environmental sequence]                   68   4e-10 
gb|EAE95270.1|  unknown [environmental sequence]                   68   4e-10 
ref|ZP_01314904.1|  hypothetical protein Wendoof_01000264 [W...    68   4e-10 
ref|ZP_01215725.1|  RNA polymerase sigma factor RpoD [Psychr...    68   4e-10 
gb|AAP42800.1|  SigB [Staphylococcus aureus]                       68   4e-10 
ref|YP_526727.1|  sigma factor RpoS [Saccharophagus degradan...    68   4e-10 
ref|YP_526190.1|  putative transcriptional regulator, Fis fa...    68   4e-10 
gb|AAK30051.2|  RpoS sigma factor [Pseudomonas fluorescens]        68   4e-10 
gb|AAB39997.1|  sigma factor [Synechococcus sp.]                   68   4e-10 
ref|YP_267823.1|  RNA polymerase sigma factor RpoS [Colwelli...    68   4e-10 
ref|NP_967007.1|  RNA polymerase sigma factor RpoD [Wolbachi...    68   4e-10 
ref|YP_252882.1|  sigma factor B [Staphylococcus haemolyticu...    68   4e-10 
ref|NP_897714.1|  Type II alternative RNA polymerase sigma f...    68   4e-10 
ref|NP_894179.1|  Type II alternative RNA polymerase sigma f...    68   4e-10 
dbj|BAA86957.1|  group 2 sigma factor RpoD3 [Synechococcus s...    68   4e-10 
ref|ZP_01125417.1|  type II alternative RNA polymerase sigma...    68   4e-10 
ref|ZP_00911469.1|  probable transcription initiation factor...    68   4e-10 
ref|YP_753527.1|  RNA polymerase sigma-G factor [Syntrophomo...    68   4e-10 
ref|ZP_00373169.1|  RNA polymerase sigma factor RpoD [Wolbac...    68   4e-10 
gb|EAK59706.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAK01290.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAI26899.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAG53210.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAC24773.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAA96664.1|  unknown [environmental sequence]                   68   5e-10 
gb|EAD86016.1|  unknown [environmental sequence]                   68   5e-10 
ref|ZP_01596625.1|  RNA polymerase, sigma 28 subunit [Marino...    68   5e-10 
ref|YP_732042.1|  RNA polymerase sigma-70 factor family prot...    68   5e-10 
gb|AAT09107.1|  RpoH-like sigma factor [Rhizobium sp. TAL11145]    68   5e-10 
gb|AAP42789.1|  SigB [Staphylococcus aureus]                       68   5e-10 
ref|NP_782791.1|  sporulation sigma factor SigF [Clostridium...    68   5e-10 
dbj|BAA25787.1|  SigB [Cyanidium caldarium]                        68   5e-10 
dbj|BAA25788.1|  SigC [Cyanidium caldarium]                        68   5e-10 
ref|ZP_01165069.1|  RNA polymerase sigma factor RpoS [Oceano...    68   5e-10 
gb|EAJ66254.1|  unknown [environmental sequence]                   67   6e-10 
gb|EAI69306.1|  unknown [environmental sequence]                   67   6e-10 
gb|EAI39749.1|  unknown [environmental sequence]                   67   6e-10 
gb|EAB63860.1|  unknown [environmental sequence]                   67   6e-10 
gb|EAE87232.1|  unknown [environmental sequence]                   67   6e-10 
ref|ZP_01468966.1|  type II alternative RNA polymerase sigma...    67   6e-10 
ref|ZP_01454565.1|  sigma-70 region 2 [Thermoanaerobacter et...    67   6e-10 
ref|YP_729335.1|  Type II alternative RNA polymerase sigma f...    67   6e-10 
ref|YP_712257.1|  RNA polymerase essential primary sigma 70 ...    67   6e-10 
ref|YP_480390.1|  sigma 38 [Frankia sp. CcI3] >gi|86566852|g...    67   6e-10 
gb|AAR84412.1|  essential primary sigma 70 factor [Frankia s...    67   6e-10 
gb|AAF20816.1|AF198628_2  RpoS [Xenorhabdus nematophila]           67   6e-10 
gb|AAA03294.1|  RNA polymerase sigma factor                        67   6e-10 
ref|YP_433139.1|  nonessential primary sigma factor [Hahella...    67   6e-10 
ref|YP_404457.1|  RNA polymerase, sigma S factor [Shigella d...    67   6e-10 
ref|YP_376157.1|  type II alternative RNA polymerase sigma f...    67   6e-10 
ref|YP_366782.1|  sigma 70 (RpoD) [Burkholderia sp. 383] >gi...    67   6e-10 
ref|YP_293202.1|  Sigma-70 region 1.2 [Ralstonia eutropha JM...    67   6e-10 
ref|YP_041514.1|  sigma factor B [Staphylococcus aureus subs...    67   6e-10 
ref|YP_186870.1|  sigma factor B [Staphylococcus aureus subs...    67   6e-10 
ref|NP_758224.1|  RNA polymerase sigma factor [Mycoplasma pe...    67   6e-10 
ref|NP_646805.1|  sigma factor B [Staphylococcus aureus subs...    67   6e-10 
ref|NP_631395.1|  RNA polymerase secondary sigma factor [Str...    67   6e-10 
ref|ZP_01139882.1|  RNA polymerase sigma-70 factor family [G...    67   6e-10 
ref|ZP_01127656.1|  RNA polymerase sigma factor [Nitrococcus...    67   6e-10 
ref|ZP_00836048.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    67   6e-10 
ref|ZP_00836271.1|  Sigma-70 region 2:Sigma-70 region 4 [She...    67   6e-10 
ref|ZP_00569500.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    67   6e-10 
ref|YP_612451.1|  RNA polymerase, sigma 32 subunit, RpoH [Si...    67   6e-10 
ref|ZP_01630948.1|  sigma factor SigF [Nodularia spumigena C...    67   8e-10 
ref|ZP_01564490.1|  RNA polymerase, sigma 38 subunit, RpoS [...    67   8e-10 
ref|YP_941775.1|  RNA polymerase sigma-70 factor RpoD [Psych...    67   8e-10 
gb|AAP42804.1|  SigB [Staphylococcus aureus]                       67   8e-10 
ref|NP_896197.1|  Type II alternative RNA polymerase sigma f...    67   8e-10 
ref|NP_631369.1|  probable RNA polymerase sigma factor [Stre...    67   8e-10 
ref|NP_601125.1|  RNA polymerase sigma factor [Corynebacteri...    67   8e-10 
gb|EAI54925.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAC55705.1|  unknown [environmental sequence]                   67   1e-09 
gb|EAA92069.1|  unknown [environmental sequence]                   67   1e-09 
ref|ZP_01471442.1|  Possible type II alternative RNA polymer...    67   1e-09 
ref|ZP_01413848.1|  putative RNA polymerase sigma factor pro...    67   1e-09 
ref|ZP_01360843.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    67   1e-09 
emb|CAI72509.1|  SigB protein [Staphylococcus aureus]              67   1e-09 
ref|NP_789202.1|  RNA polymerase sigma factor [Tropheryma wh...    67   1e-09 
ref|YP_564500.1|  RNA polymerase sigma factor RpoH [Shewanel...    67   1e-09 
ref|YP_474688.1|  RNA polymerase sigma factor [Synechococcus...    67   1e-09 
ref|YP_205450.1|  RNA polymerase sigma factor RpoS [Vibrio f...    67   1e-09 
gb|AAC46141.1|  RNA polymerase subunit sigma 38 [Pectobacter...    67   1e-09 
ref|YP_053511.1|  RNA polymerase sigma factor [Mesoplasma fl...    67   1e-09 
ref|YP_159500.1|  RNA polymerase sigma factor [Azoarcus sp. ...    67   1e-09 
ref|NP_490285.1|  group 2 sigma 70-type sigma factor [Nostoc...    67   1e-09 
dbj|BAC21137.1|  principal sigma factor [Phormidium sp. IAM ...    67   1e-09 
dbj|BAC21145.1|  principal sigma factor [Pleurocapsa sp. PCC...    67   1e-09 
ref|YP_988464.1|  RNA polymerase sigma-32 factor [Bartonella...    67   1e-09 
ref|ZP_01074497.1|  sigma S (sigma 38) factor of RNA polymer...    67   1e-09 
ref|ZP_00958738.1|  RNA polymerase sigma factor [Roseovarius...    67   1e-09 
ref|YP_584752.1|  sigma 70 (RpoD) [Ralstonia metallidurans C...    67   1e-09 
ref|YP_748979.1|  RNA polymerase, sigma 32 subunit, RpoH [Sh...    67   1e-09 
ref|NP_375172.1|  sigma factor B [Staphylococcus aureus subs...    67   1e-09 
gb|EAH49497.1|  unknown [environmental sequence]                   66   1e-09 
gb|EAG72027.1|  unknown [environmental sequence]                   66   1e-09 
gb|EAG72026.1|  unknown [environmental sequence]                   66   1e-09 
gb|EAC33412.1|  unknown [environmental sequence]                   66   1e-09 
ref|YP_934729.1|  RNA polymerase sigma factor [Azoarcus sp. ...    66   1e-09 
ref|ZP_01389620.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    66   1e-09 
emb|CAB56153.1|  RpoS protein [Pectobacterium carotovorum]         66   1e-09 
emb|CAA34435.1|  katF [Escherichia coli]                           66   1e-09 
gb|AAK09322.1|AF320818_1  sigma factor SigB [Brevibacterium ...    66   1e-09 
ref|YP_055741.1|  RNA polymerase principal sigma factor HrdD...    66   1e-09 
ref|YP_392072.1|  sigma 70 (RpoD) [Thiomicrospira crunogena ...    66   1e-09 
ref|YP_372660.1|  sigma 38 (RpoS) [Burkholderia sp. 383] >gi...    66   1e-09 
ref|YP_343927.1|  RpoH [Nitrosococcus oceani ATCC 19707] >gi...    66   1e-09 
ref|YP_300904.1|  truncated RNA polymerase sigma-B factor [S...    66   1e-09 
ref|YP_250876.1|  RNA polymerase sigma factor B [Corynebacte...    66   1e-09 
ref|YP_051618.1|  RNA polymerase sigma factor [Erwinia carot...    66   1e-09 
ref|NP_970064.1|  RNA polymerase sigma-32 factor [Bdellovibr...    66   1e-09 
ref|NP_001061343.1|  Os08g0242800 [Oryza sativa (japonica cu...    66   1e-09 
dbj|BAC21150.1|  principal sigma factor [Synechococcus sp. P...    66   1e-09 
ref|NP_625194.1|  RNA polymerase principal sigma factor HrdC...    66   1e-09 
dbj|BAC44902.1|  principal sigma factor [Anabaena planctonic...    66   1e-09 
ref|ZP_01124430.1|  type II alternative RNA polymerase sigma...    66   1e-09 
ref|ZP_01114606.1|  RNA polymerase sigma factor [Reinekea sp...    66   1e-09 
ref|YP_753315.1|  sigma 28 (flagella/sporulation) [Syntropho...    66   1e-09 
gb|EAK53667.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAK18740.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAI10656.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAG61711.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAG32981.1|  unknown [environmental sequence]                   66   2e-09 
gb|EAB25593.1|  unknown [environmental sequence]                   66   2e-09 
ref|YP_001017438.1|  putative type III sigma factor [Prochlo...    66   2e-09 
gb|AAZ80066.1|  RpoS variant [Escherichia coli]                    66   2e-09 
ref|YP_546430.1|  sigma 70 (RpoD) [Methylobacillus flagellat...    66   2e-09 
ref|ZP_01236153.1|  putative RNA polymerase sigma-38 factor ...    66   2e-09 
ref|AP_003308.1|  RNA polymerase, sigma S (sigma 38) factor ...    66   2e-09 
gb|AAD01001.1|  RpoS [Escherichia coli] >gi|4100840|gb|AAD01...    66   2e-09 
gb|AAN15269.1|  RNA polymerase sigma factor S variant [Esche...    66   2e-09 
gb|AAG53883.1|AF275947_2  sigma factor RpoS [Escherichia coli]     66   2e-09 
emb|CAB53534.1|  RpoS protein [Escherichia coli O157:H7]           66   2e-09 
emb|CAA78689.1|  KatF [Escherichia coli]                           66   2e-09 
gb|AAB81191.1|  sigma factor [Bacillus sphaericus]                 66   2e-09 
ref|NP_417221.1|  RNA polymerase sigma factor [Escherichia c...    66   2e-09 
ref|NP_708546.1|  RNA polymerase sigma factor [Shigella flex...    66   2e-09 
ref|YP_542094.1|  sigma factor RpoS [Escherichia coli UTI89]...    66   2e-09 
gb|AAF01230.1|AF184099_1  mutant RpoS [Salmonella typhimuriu...    66   2e-09 
gb|AAG14981.1|AF242209_6  alternative sigma factor [Escheric...    66   2e-09 
ref|YP_409133.1|  RNA polymerase sigma S factor [Shigella bo...    66   2e-09 
ref|NP_539197.1|  RNA polymerase sigma factor [Brucella meli...    66   2e-09 
ref|NP_289290.1|  RNA polymerase sigma factor [Escherichia c...    66   2e-09 
dbj|BAD80742.1|  plastid sigma factor PpSIG5 [Physcomitrella...    66   2e-09 
dbj|BAA02747.1|  RNA polymerase sigma subunit, sigma-38 [Esc...    66   2e-09 
emb|CAA78692.1|  KatF [Escherichia coli]                           66   2e-09 
sp|P35540|RPOS_SHIFL  RNA polymerase sigma factor rpoS             66   2e-09 
dbj|BAC21141.1|  principal sigma factor [Oscillatoria sp. PC...    66   2e-09 
ref|NP_457313.1|  RNA polymerase sigma factor [Salmonella en...    66   2e-09 
gb|AAA61628.1|  RNA polymerase sigma factor >gi|1090521|prf|...    66   2e-09 
ref|ZP_01182097.1|  Sigma-70 region 3:Sigma-70 region 2:Sigm...    66   2e-09 
ref|ZP_01161509.1|  putative RNA polymerase sigma-38 factor ...    66   2e-09 
ref|ZP_01086196.1|  type II alternative RNA polymerase sigma...    66   2e-09 
ref|YP_958213.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    66   2e-09 
ref|ZP_00734901.1|  COG0568: DNA-directed RNA polymerase, si...    66   2e-09 
ref|NP_311622.1|  RNA polymerase sigma factor [Escherichia c...    66   2e-09 
ref|ZP_00711071.1|  COG0568: DNA-directed RNA polymerase, si...    66   2e-09 
gb|EAJ81375.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAI51229.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAH50409.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAD50880.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAC50458.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAC02547.1|  unknown [environmental sequence]                   65   2e-09 
gb|EAE19945.1|  unknown [environmental sequence]                   65   2e-09 
ref|YP_001005116.1|  RNA polymerase sigma factor RpoS [Yersi...    65   2e-09 
ref|ZP_01573836.1|  RNA polymerase, sigma 28 subunit [Clostr...    65   2e-09 
emb|CAA10959.1|  RpoS [Erwinia amylovora]                          65   2e-09 
emb|CAA05499.1|  rpoS gene [Kluyvera cryocrescens]                 65   2e-09 
ref|YP_573032.1|  sigma 70 (RpoD) [Chromohalobacter salexige...    65   2e-09 
ref|YP_411198.1|  sigma 28 (Flagella/Sporulation) [Nitrososp...    65   2e-09 
ref|YP_342246.1|  RpoS [Nitrosococcus oceani ATCC 19707] >gi...    65   2e-09 
ref|YP_316146.1|  Carbamoyl-phosphate synthase L chain, ATP-...    65   2e-09 
ref|YP_287460.1|  RNA polymerase sigma factor [Mycoplasma hy...    65   2e-09 
ref|YP_115577.1|  RNA polymerase sigma factor [Mycoplasma hy...    65   2e-09 
ref|NP_698747.1|  RNA polymerase sigma factor [Brucella suis...    65   2e-09 
gb|AAD33933.1|AF144608_2  RNA polymerase sigma factor RpoS [...    65   2e-09 
ref|NP_898516.1|  Possible type II alternative RNA polymeras...    65   2e-09 
ref|NP_692397.1|  sporulation sigma factor SigG [Oceanobacil...    65   2e-09 
dbj|BAC44904.1|  principal sigma factor [Fischerella major N...    65   2e-09 
sp|P47765|RPOS_YEREN  RNA polymerase sigma factor rpoS >gi|6...    65   2e-09 
dbj|BAC21149.1|  principal sigma factor [Pseudanabaena sp. P...    65   2e-09 
ref|NP_078183.1|  RNA polymerase sigma factor [Ureaplasma pa...    65   2e-09 
ref|ZP_00835051.1|  COG0568: DNA-directed RNA polymerase, si...    65   2e-09 
ref|ZP_00826664.1|  COG0568: DNA-directed RNA polymerase, si...    65   2e-09 
ref|ZP_00820664.1|  COG0568: DNA-directed RNA polymerase, si...    65   2e-09 
ref|YP_926921.1|  RNA polymerase sigma-38 factor [Shewanella...    65   2e-09 
ref|ZP_00618809.1|  Sigma-70 region 2:Sigma-70 region 4 [Kin...    65   2e-09 
ref|ZP_00516377.1|  Helix-turn-helix, Fis-type [Crocosphaera...    65   2e-09 
ref|YP_069317.1|  RNA polymerase sigma factor [Yersinia pseu...    65   2e-09 
ref|YP_132632.1|  hypothetical DNA-directed RNA polymerase, ...    65   2e-09 
ref|YP_866974.1|  RNA polymerase, sigma 32 subunit, RpoH [Ma...    65   2e-09 
ref|YP_721042.1|  RNA polymerase, sigma 28 subunit [Trichode...    65   2e-09 
ref|NP_406818.1|  RNA polymerase sigma factor [Yersinia pest...    65   2e-09 
gb|EAJ11314.1|  unknown [environmental sequence]                   65   3e-09 
gb|EAI93760.1|  unknown [environmental sequence]                   65   3e-09 
gb|EAH90139.1|  unknown [environmental sequence]                   65   3e-09 
gb|EAH88244.1|  unknown [environmental sequence]                   65   3e-09 
gb|EAG65944.1|  unknown [environmental sequence]                   65   3e-09 
gb|EAC68273.1|  unknown [environmental sequence]                   65   3e-09 
ref|YP_001016998.1|  Type II alternative RNA polymerase sigm...    65   3e-09 
ref|ZP_01589739.1|  RNA polymerase, sigma 28 subunit [Entero...    65   3e-09 
ref|ZP_01536823.1|  RNA polymerase, sigma 28 subunit [Serrat...    65   3e-09 
ref|ZP_01301185.1|  hypothetical protein Rgryl_01000510 [Ric...    65   3e-09 
emb|CAA73683.1|  rpoS [Enterobacter cloacae]                       65   3e-09 
gb|AAD02575.1|  RNA polymerase sigma factor; RpoD2 [Cyanidiu...    65   3e-09 
ref|YP_482587.1|  sigma 38 [Frankia sp. CcI3] >gi|86569049|g...    65   3e-09 
ref|YP_165669.1|  RNA polymerase sigma factor [Silicibacter ...    65   3e-09 
gb|AAL11451.1|  RNA polymerase sigma-38 subunit [Serratia pl...    65   3e-09 
ref|NP_720099.1|  RNA polymerase sigma factor [Shewanella on...    65   3e-09 
ref|YP_106729.1|  RNA polymerase sigma factor [Burkholderia ...    65   3e-09 
ref|NP_840323.1|  RNA polymerase sigma factor [Nitrosomonas ...    65   3e-09 
ref|NP_894899.1|  Type II alternative RNA polymerase sigma f...    65   3e-09 
dbj|BAC21142.1|  principal sigma factor [Xenococcus sp. PCC ...    65   3e-09 
dbj|BAC44906.1|  principal sigma factor [Scytonema sp. IAM M...    65   3e-09 
ref|NP_389416.1|  sporulation sigma factor SigG [Bacillus su...    65   3e-09 
ref|ZP_00831537.1|  COG0568: DNA-directed RNA polymerase, si...    65   3e-09 
ref|YP_746549.1|  RNA polymerase, sigma 70 subunit, RpoD [Ni...    65   3e-09 
ref|ZP_00574150.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    65   3e-09 
gb|EAK24772.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAJ84526.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAC82425.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAC59287.1|  unknown [environmental sequence]                   65   4e-09 
gb|EAE17348.1|  unknown [environmental sequence]                   65   4e-09 
ref|ZP_01662532.1|  RNA polymerase sigma S (sigma-38) factor...    65   4e-09 
ref|ZP_01551707.1|  RNA polymerase sigma factor [Methylophil...    65   4e-09 
ref|YP_727172.1|  DNA-directed RNA polymerase sigma subunit ...    65   4e-09 
ref|YP_715849.1|  Alternative primary sigma 70 transcription...    65   4e-09 
gb|AAM91534.1|  sigma factor SigC [Arabidopsis thaliana]           65   4e-09 
gb|AAN76995.1|AF481769_1  primary sigma 70 transcriptional f...    65   4e-09 
gb|AAF01229.1|AF184098_1  mutant RpoS [Salmonella typhimuriu...    65   4e-09 
ref|YP_461927.1|  RNA polymerase sigma-B factor [Syntrophus ...    65   4e-09 
gb|ABC00797.1|  RpoS [Escherichia coli]                            65   4e-09 
ref|NP_787627.1|  RNA polymerase sigma factor [Tropheryma wh...    65   4e-09 
dbj|BAC21144.1|  principal sigma factor [Nodularia sp. PCC 7...    65   4e-09 
dbj|BAC44901.1|  principal sigma factor [Chlorogloeopsis fri...    65   4e-09 
ref|NP_562964.1|  sporulation sigma factor SigF [Clostridium...    65   4e-09 
dbj|BAC21128.1|  principal sigma factor [Anabaena variabilis...    65   4e-09 
ref|NP_190960.1|  SIGC; DNA binding / DNA-directed RNA polym...    65   4e-09 
gb|EAK26324.1|  unknown [environmental sequence]                   64   5e-09 
gb|EAI84177.1|  unknown [environmental sequence]                   64   5e-09 
gb|EAH95671.1|  unknown [environmental sequence]                   64   5e-09 
gb|EAC84417.1|  unknown [environmental sequence]                   64   5e-09 
gb|EAE78327.1|  unknown [environmental sequence]                   64   5e-09 
gb|EAE01208.1|  unknown [environmental sequence]                   64   5e-09 
ref|YP_932594.1|  putative RNA polymerase sigma factor [Azoa...    64   5e-09 
ref|ZP_01553768.1|  RNA polymerase, sigma 70 subunit, RpoD [...    64   5e-09 
ref|ZP_01507871.1|  RNA polymerase, sigma 70 subunit, RpoD [...    64   5e-09 
ref|YP_730230.1|  Type II alternative RNA polymerase sigma f...    64   5e-09 
ref|ZP_01308854.1|  RNA polymerase sigma factor rpoD [Candid...    64   5e-09 
ref|YP_552525.1|  Sigma 70 (RpoD) [Burkholderia xenovorans L...    64   5e-09 
ref|YP_356846.1|  DNA-directed RNA polymerase, sigma 70/sigm...    64   5e-09 
ref|YP_522821.1|  sigma 70 (RpoD) [Rhodoferax ferrireducens ...    64   5e-09 
gb|AAF01234.1|AF184103_1  mutant RpoS [Salmonella typhimuriu...    64   5e-09 
gb|AAG42748.1|AF299295_2  RNA polymerase sigma factor [Zymom...    64   5e-09 
gb|AAD03549.1|  principal sigma factor [Burkholderia cepacia]      64   5e-09 
ref|NP_980243.1|  sporulation sigma factor SigG [Bacillus ce...    64   5e-09 
ref|NP_846282.1|  sporulation sigma factor SigG [Bacillus an...    64   5e-09 
ref|NP_833623.1|  sporulation sigma factor SigG [Bacillus ce...    64   5e-09 
gb|AAA79182.1|  RpoS                                               64   5e-09 
ref|YP_131189.1|  putative RNA polymerase sigma-38 factor [P...    64   5e-09 
dbj|BAC21129.1|  principal sigma factor [Oscillatoria agardhii]    64   5e-09 
dbj|BAC21139.1|  principal sigma factor [Stanieria cyanospha...    64   5e-09 
dbj|BAC21138.1|  principal sigma factor [Pseudanabaena sp. P...    64   5e-09 
ref|YP_981839.1|  RNA polymerase, sigma 70 subunit, RpoD fam...    64   5e-09 
ref|ZP_00998013.1|  RNA polymerase sigma factor [Oceanicola ...    64   5e-09 
ref|ZP_00962098.1|  RNA polymerase sigma factor [Sulfitobact...    64   5e-09 
ref|ZP_00799646.1|  Phage transcriptional activator RinA [Al...    64   5e-09 
ref|YP_775146.1|  RNA polymerase, sigma 70 subunit, RpoD [Bu...    64   5e-09 
ref|ZP_00427201.1|  Sigma-70 region 1.1:Sigma-70 region 3:Si...    64   5e-09 
ref|ZP_00240965.1|  RNA polymerase sigma-G factor [Bacillus ...    64   5e-09 
ref|YP_735891.1|  RNA polymerase, sigma 32 subunit, RpoH [Sh...    64   5e-09 
gb|EAB57261.1|  unknown [environmental sequence] >gi|4410697...    64   7e-09 
gb|EAC92568.1|  unknown [environmental sequence]                   64   7e-09 
gb|EAB20536.1|  unknown [environmental sequence]                   64   7e-09 
ref|ZP_01649885.1|  RNA polymerase, sigma 28 subunit [Salini...    64   7e-09 
ref|YP_701644.1|  sigma factor, sigma 70 type, probable grou...    64   7e-09 
ref|ZP_01220111.1|  putative RNA polymerase sigma-38 factor ...    64   7e-09 
gb|AAM54109.1|AF453501_35  RNA polymerase sigma factor [Acti...    64   7e-09 
gb|AAF05336.1|AF182103_2  RNA polymerase sigma subunit [Esch...    64   7e-09 
gb|AAF05334.1|AF182102_2  RNA polymerase sigma subunit [Esch...    64   7e-09 
emb|CAC81021.1|  mutant RpoS sigma factor [Escherichia coli]       64   7e-09 
gb|AAL08569.1|AF417007_1  DNA-directed RNA polymerase specia...    64   7e-09 
emb|CAC44359.1|  RpoS protein [Erwinia chrysanthemi]               64   7e-09 
gb|AAF01228.1|AF184097_1  mutant RpoS [Salmonella typhimuriu...    64   7e-09 
ref|YP_440648.1|  RNA polymerase sigma factor RpoD [Burkhold...    64   7e-09 
ref|YP_283753.1|  RNA polymerase sigma factor [Dechloromonas...    64   7e-09 
ref|YP_295111.1|  RNA polymerase sigma factor [Ralstonia eut...    64   7e-09 
ref|NP_952576.1|  RNA polymerase sigma-70 factor family [Geo...    64   7e-09 
ref|YP_157427.1|  RNA polymerase sigma factor [Azoarcus sp. ...    64   7e-09 
dbj|BAC21127.1|  principal sigma factor [Spirulina platensis]      64   7e-09 
ref|ZP_01167191.1|  RNA polymerase sigma factor [Oceanospiri...    64   7e-09 
ref|ZP_00984780.1|  COG0568: DNA-directed RNA polymerase, si...    64   7e-09 
ref|ZP_00956789.1|  RNA polymerase sigma factor [Sulfitobact...    64   7e-09 
ref|YP_957444.1|  RNA polymerase, sigma 32 subunit, RpoH [Ma...    64   7e-09 
ref|YP_675916.1|  RNA polymerase, sigma 32 subunit, RpoH [Me...    64   7e-09 
gb|EAI38153.1|  unknown [environmental sequence]                   64   9e-09 
gb|EAD22211.1|  unknown [environmental sequence]                   64   9e-09 
gb|EAB23776.1|  unknown [environmental sequence]                   64   9e-09 
gb|EAD88936.1|  unknown [environmental sequence]                   64   9e-09 
ref|ZP_01576009.1|  RNA polymerase, sigma 28 subunit [Clostr...    64   9e-09 
ref|YP_855373.1|  RNA polymerase sigma factor RpoS [Aeromona...    64   9e-09 
ref|ZP_01469159.1|  possible type II alternative RNA polymer...    64   9e-09 
emb|CAJ49939.1|  RNA polymerase sigma factor 70 [Bordetella ...    64   9e-09 
ref|ZP_01443439.1|  RNA polymerase sigma factor [Roseovarius...    64   9e-09 
ref|YP_412743.1|  sigma 70 (RpoD) [Nitrosospira multiformis ...    64   9e-09 
ref|NP_326285.1|  RNA polymerase sigma factor [Mycoplasma pu...    64   9e-09 
ref|NP_372588.1|  sigma factor B [Staphylococcus aureus subs...    64   9e-09 
gb|EAI21110.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAH89984.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAG84060.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAB63510.1|  unknown [environmental sequence]                   63   1e-08 
ref|YP_001028216.1|  putative RNA polymerase sigma factor Rp...    63   1e-08 
ref|ZP_01661012.1|  putative RNA polymerase sigma(sigma-70) ...    63   1e-08 
ref|ZP_01657434.1|  RNA polymerase sigma factor protein (sig...    63   1e-08 
ref|YP_991115.1|  RNA polymerase sigma factor RpoD [Burkhold...    63   1e-08 
ref|ZP_01568739.1|  RNA polymerase, sigma 70 subunit, RpoD f...    63   1e-08 
ref|ZP_01451889.1|  RNA polymerase sigma factor [Mariprofund...    63   1e-08 
ref|ZP_01448932.1|  RNA polymerase sigma factor [alpha prote...    63   1e-08 
gb|AAC45085.1|  RNA polymerase sigma 80 subunit [Bordetella ...    63   1e-08 
ref|YP_438821.1|  RNA polymerase sigma factor RpoD [Burkhold...    63   1e-08 
ref|YP_378235.1|  possible type II alternative RNA polymeras...    63   1e-08 
ref|YP_372959.1|  RNA polymerase sigma factor [Burkholderia ...    63   1e-08 
ref|YP_335991.1|  RNA polymerase sigma factor [Burkholderia ...    63   1e-08 
ref|YP_101962.1|  RNA polymerase sigma factor RpoD, putative...    63   1e-08 
ref|YP_339218.1|  sigma S (sigma 38) factor of RNA polymeras...    63   1e-08 
ref|NP_885040.1|  RNA polymerase sigma factor [Bordetella pa...    63   1e-08 
ref|NP_889697.1|  RNA polymerase sigma factor [Bordetella br...    63   1e-08 
ref|NP_880832.1|  RNA polymerase sigma factor [Bordetella pe...    63   1e-08 
ref|NP_520336.1|  RNA polymerase sigma factor [Ralstonia sol...    63   1e-08 
dbj|BAC21132.1|  principal sigma factor [Anabaena cylindrica]      63   1e-08 
pir||JN0442  transcription initiation factor sigma homolog h...    63   1e-08 
sp|P27785|RPOD_STRAU  RNA polymerase sigma factor rpoD             63   1e-08 
dbj|BAC21130.1|  principal sigma factor [Calothrix brevissima]     63   1e-08 
dbj|BAA22215.1|  plastid RNA polymerase sigma-subunit [Arabi...    63   1e-08 
ref|ZP_01187841.1|  Sigma-70 region 2:Sigma-70 region 4 [Bac...    63   1e-08 
ref|ZP_00944970.1|  RpoS [Ralstonia solanacearum UW551] >gi|...    63   1e-08 
ref|ZP_00943557.1|  RpoD [Ralstonia solanacearum UW551] >gi|...    63   1e-08 
ref|ZP_00979017.1|  COG0568: DNA-directed RNA polymerase, si...    63   1e-08 
ref|YP_929337.1|  RNA polymerase sigma-32 factor [Shewanella...    63   1e-08 
ref|ZP_01328645.1|  hypothetical protein BpseS_03003327 [Bur...    63   1e-08 
ref|ZP_00896033.1|  hypothetical protein Bpse110_02001526 [B...    63   1e-08 
ref|ZP_00486693.1|  COG0568: DNA-directed RNA polymerase, si...    63   1e-08 
ref|ZP_00490734.1|  COG0568: DNA-directed RNA polymerase, si...    63   1e-08 
ref|ZP_00441190.1|  COG0568: DNA-directed RNA polymerase, si...    63   1e-08 
ref|ZP_00443360.1|  COG0568: DNA-directed RNA polymerase, si...    63   1e-08 
ref|YP_837516.1|  RNA polymerase, sigma 70 subunit, RpoD [Bu...    63   1e-08 
ref|YP_105146.1|  RNA polymerase sigma factor [Burkholderia ...    63   1e-08 
ref|YP_001021681.1|  putative RNA polymerase sigma(sigma-70)...    63   1e-08 
gb|EAD52424.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAG33494.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAC24914.1|  unknown [environmental sequence]                   63   1e-08 
gb|EAB04605.1|  unknown [environmental sequence]                   63   1e-08 
ref|YP_001018951.1|  Putative type II alternative RNA polyme...    63   1e-08 
ref|YP_945938.1|  putative RNA polymerase sigma (70) factor ...    63   1e-08 
ref|ZP_01505174.1|  RNA polymerase, sigma 70 subunit, RpoD [...    63   1e-08 
ref|ZP_01633012.1|  hypothetical protein CdifQ_03004305 [Clo...    63   1e-08 
ref|ZP_01430544.1|  sigma-70 region 3 [Salinispora tropica C...    63   1e-08 
emb|CAJ72618.1|  similar to DNA-directed RNA polymerase sigm...    63   1e-08 
ref|YP_554959.1|  Sigma 70 (RpoD) [Burkholderia xenovorans L...    63   1e-08 
ref|ZP_01216060.1|  putative RNA polymerase sigma-38 factor ...    63   1e-08 
ref|ZP_01210706.1|  hypothetical protein Bpse17_02004220 [Bu...    63   1e-08 
ref|YP_061991.1|  RNA polymerase sigma factor [Leifsonia xyl...    63   1e-08 
gb|AAC38577.1|  alternative RNA sigma factor RpoS [Ralstonia...    63   1e-08 
ref|YP_331741.1|  RNA polymerase sigma factor [Burkholderia ...    63   1e-08 
ref|YP_278861.1|  RNA polymerase sigma factor [Mycoplasma hy...    63   1e-08 
ref|YP_320012.1|  Sigma-70 [Anabaena variabilis ATCC 29413] ...    63   1e-08 
dbj|BAC21147.1|  principal sigma factor [Leptolyngbya sp. PC...    63   1e-08 
ref|NP_519328.1|  RNA polymerase sigma factor [Ralstonia sol...    63   1e-08 
ref|ZP_01131565.1|  RNA polymerase sigma factor [marine acti...    63   1e-08 
ref|ZP_01317674.1|  hypothetical protein Bpse1_03003018 [Bur...    63   1e-08 
ref|YP_624093.1|  RNA polymerase, sigma 38 subunit, RpoS [Bu...    63   1e-08 
gb|EAI87270.1|  unknown [environmental sequence]                   62   2e-08 
gb|EAH29559.1|  unknown [environmental sequence]                   62   2e-08 
gb|EAG94442.1|  unknown [environmental sequence]                   62   2e-08 
gb|EAB43102.1|  unknown [environmental sequence]                   62   2e-08 
emb|CAB83107.1|  sigma factor 3 [Sinapis alba]                     62   2e-08 
ref|YP_384380.1|  sigma 28 (Flagella/Sporulation) [Geobacter...    62   2e-08 
ref|YP_175846.1|  sporulation sigma factor SigG [Bacillus cl...    62   2e-08 
dbj|BAC21136.1|  principal sigma factor [Synechococcus leopo...    62   2e-08 
dbj|BAA13043.1|  part of principal sigma factor homolog [Syn...    62   2e-08 
ref|ZP_01057869.1|  RNA polymerase sigma factor [Roseobacter...    62   2e-08 
gb|EAK75908.1|  unknown [environmental sequence]                   62   3e-08 

>ref|NP_288383.1| flagellar biosynthesis sigma factor FliA [Escherichia coli O157:H7
           EDL933]
 ref|NP_310688.1| flagellar biosynthesis sigma factor FliA [Escherichia coli O157:H7
           str. Sakai]
 ref|NP_754229.1| flagellar biosynthesis sigma factor FliA [Escherichia coli CFT073]
 ref|NP_416432.3| flagellar biosynthesis sigma factor [Escherichia coli K12]
 ref|YP_310150.1| alternative sigma factor 28 [Shigella sonnei Ss046]
 ref|ZP_00709114.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli B171]
 ref|ZP_00715155.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli B7A]
 ref|ZP_00718405.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli E110019]
 ref|ZP_00723157.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli F11]
 ref|ZP_00923694.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli 101-1]
 ref|AP_002537.1| RNA polymerase, sigma 28 (sigma F) factor [Escherichia coli W3110]
 ref|YP_669757.1| RNA polymerase sigma factor for flagellar operon [Escherichia coli
           536]
 sp|P0AEM8|FLIA_ECO57 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 sp|P0AEM7|FLIA_ECOL6 RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 sp|P0AEM6|FLIA_ECOLI RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 gb|AAG56937.1|AE005415_2 flagellar biosynthesis; alternative sigma factor 28; regulation of
           flagellar operons [Escherichia coli O157:H7 EDL933]
 gb|AAN80796.1|AE016762_49 RNA polymerase sigma factor for flagellar operon [Escherichia coli
           CFT073]
 gb|AAC37011.1| sigma factor 28
 gb|AAC43543.1| sigma F
 dbj|BAA15742.1| RNA polymerase, sigma 28 (sigma F) factor [Escherichia coli W3110]
 gb|AAC74989.1| RNA polymerase, sigma 28 (sigma F) factor [Escherichia coli K12]
 dbj|BAB36084.1| transcription initiation factor alternative sigma factor 28
           [Escherichia coli O157:H7 str. Sakai]
 gb|AAZ87915.1| alternative sigma factor 28 [Shigella sonnei Ss046]
 gb|ABG69856.1| RNA polymerase sigma factor for flagellar operon [Escherichia coli
           536]
 gb|EAY46070.1| RNA polymerase, sigma 28 subunit, FliA/WhiG family [Escherichia
           coli B]
          Length = 239

 Score =  466 bits (1200), Expect = e-130
 Identities = 239/239 (100%), Positives = 239/239 (100%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ
Sbjct: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|ZP_00734131.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli 53638]
          Length = 239

 Score =  465 bits (1197), Expect = e-130
 Identities = 238/239 (99%), Positives = 239/239 (100%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLD+NLRQ
Sbjct: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDNNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|YP_541127.1| flagellar biosynthesis; alternative sigma factor 28; regulation of
           flagellar operons [Escherichia coli UTI89]
 ref|YP_852977.1| flagellar biosynthesis sigma factor FliA [Escherichia coli APEC O1]
 gb|ABE07596.1| flagellar biosynthesis; alternative sigma factor 28; regulation of
           flagellar operons [Escherichia coli UTI89]
 gb|ABJ01263.1| flagellar biosynthesis sigma factor FliA [Escherichia coli APEC O1]
          Length = 239

 Score =  465 bits (1196), Expect = e-129
 Identities = 238/239 (99%), Positives = 238/239 (99%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ
Sbjct: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVME IETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMETIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|YP_407557.1| alternative sigma factor 28 [Shigella boydii Sb227]
 gb|ABB65729.1| alternative sigma factor 28 [Shigella boydii Sb227]
          Length = 239

 Score =  464 bits (1194), Expect = e-129
 Identities = 238/239 (99%), Positives = 238/239 (99%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ
Sbjct: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRL TKLGKL
Sbjct: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLSTKLGKL 239



>ref|YP_402747.1| alternative sigma factor 28 [Shigella dysenteriae Sd197]
 gb|ABB61256.1| alternative sigma factor 28 [Shigella dysenteriae Sd197]
          Length = 239

 Score =  459 bits (1180), Expect = e-128
 Identities = 236/239 (98%), Positives = 237/239 (99%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQ IRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQCIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDD+QRENPLQQLLDSNLRQ
Sbjct: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDYQRENPLQQLLDSNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVMEAIETLPEREKLVLTLYYQEELNLKEIGA LEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAELEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|ZP_00704211.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli E24377A]
 ref|ZP_00727313.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli E22]
 ref|YP_689415.1| flagellar biosynthesis sigma factor FliA [Shigella flexneri 5 str.
           8401]
 gb|ABF04110.1| flagellar biosynthesis sigma factor FliA [Shigella flexneri 5 str.
           8401]
          Length = 229

 Score =  447 bits (1150), Expect = e-124
 Identities = 229/229 (100%), Positives = 229/229 (100%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY
Sbjct: 1   MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD
Sbjct: 61  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP
Sbjct: 121 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 180

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 229



>ref|ZP_00706052.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Escherichia coli HS]
          Length = 229

 Score =  446 bits (1146), Expect = e-124
 Identities = 228/229 (99%), Positives = 228/229 (99%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY
Sbjct: 1   MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDWVPRSVRRNAREV QAIGQLEQELGRNATETEVAERLGIDIAD
Sbjct: 61  AVQRIRGAMLDELRSRDWVPRSVRRNAREVVQAIGQLEQELGRNATETEVAERLGIDIAD 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP
Sbjct: 121 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 180

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 229



>ref|NP_456519.1| flagellar biosynthesis sigma factor FliA [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 ref|NP_460909.1| flagellar biosynthesis sigma factor FliA [Salmonella typhimurium
           LT2]
 ref|NP_804748.1| flagellar biosynthesis sigma factor FliA [Salmonella enterica
           subsp. enterica serovar Typhi Ty2]
 ref|YP_216947.1| flagellar biosynthesis sigma factor FliA [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 sp|P0A2E8|FLIA_SALTY RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 sp|P0A2E9|FLIA_SALTI RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 pir||AF0750 RNA polymerase sigma transcription factor for flagellar operon fliA
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 dbj|BAA00389.1| sigma factor [Salmonella typhimurium]
 dbj|BAA36397.1| FliA [Salmonella typhimurium]
 gb|AAL20868.1| sigma F (sigma 28) factor of RNA polymerase [Salmonella typhimurium
           LT2]
 emb|CAD05705.1| RNA polymerase sigma transcription factor for flagellar operon
           [Salmonella enterica subsp. enterica serovar Typhi]
 gb|AAO68597.1| RNA polymerase sigma transcription factor for flagellar operon
           [Salmonella enterica subsp. enterica serovar Typhi Ty2]
 gb|AAX65866.1| sigma F (sigma 28) factor of RNA polymerase, transcription of late
           flagellar genes (class 3a and 3b operons) [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
          Length = 239

 Score =  444 bits (1141), Expect = e-123
 Identities = 224/239 (93%), Positives = 236/239 (98%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYD
Sbjct: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGI +A+YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPL QLL+ +LRQ
Sbjct: 121 AERLGIPVAEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVM+AIE+LPERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMDAIESLPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|ZP_01587549.1| RNA polymerase, sigma 28 subunit [Enterobacter sp. 638]
 gb|EAV86409.1| RNA polymerase, sigma 28 subunit [Enterobacter sp. 638]
          Length = 239

 Score =  439 bits (1130), Expect = e-122
 Identities = 222/239 (92%), Positives = 232/239 (97%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MN+LYTA+GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYD
Sbjct: 1   MNTLYTADGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVA AIGQLEQELGRNATETEV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAHAIGQLEQELGRNATETEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           AERLGI + DYRQMLLDTNNSQLFSYDEWREEHGDS+ELVTD++Q ENPL QLL+ NLRQ
Sbjct: 121 AERLGIAVQDYRQMLLDTNNSQLFSYDEWREEHGDSVELVTDENQHENPLHQLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           RVM+AIE LPERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 RVMDAIEALPEREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239



>ref|YP_150204.1| flagellar biosynthesis sigma factor FliA [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gb|AAV76892.1| RNA polymerase sigma transcription factor for flagellar operon
           [Salmonella enterica subsp. enterica serovar Paratyphi A
           str. ATCC 9150]
          Length = 229

 Score =  424 bits (1091), Expect = e-117
 Identities = 214/229 (93%), Positives = 226/229 (98%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAV+RYDALQGTAFTTY
Sbjct: 1   MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVDRYDALQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETEVAERLGI +A+
Sbjct: 61  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETEVAERLGIPVAE 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPL QLL+ +LRQRVM+AIE+LP
Sbjct: 121 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLHQLLEGDLRQRVMDAIESLP 180

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           ERE+LVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL
Sbjct: 181 EREQLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 229



>ref|ZP_00831229.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia frederiksenii ATCC 33641]
          Length = 240

 Score =  395 bits (1015), Expect = e-108
 Identities = 200/236 (84%), Positives = 218/236 (92%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ ++EQ LGR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQKVEQRLGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+A+YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQ
Sbjct: 121 AQILDIDLAEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLQHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|YP_001006726.1| RNA polymerase sigma factor for flagellar operon [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 emb|CAL12562.1| RNA polymerase sigma factor for flagellar operon [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 240

 Score =  395 bits (1014), Expect = e-108
 Identities = 199/236 (84%), Positives = 217/236 (91%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ ++EQ LGR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQKVEQRLGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+ +YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQ
Sbjct: 121 AQNLDIDLTEYRQILLDTNNSQLFSYDEWREEHGESVEPMLEGHEDANPLQHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|ZP_00835323.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia intermedia ATCC 29909]
          Length = 240

 Score =  394 bits (1012), Expect = e-108
 Identities = 199/236 (84%), Positives = 218/236 (92%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ ++EQ +GR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQKVEQRVGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+A+YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQ
Sbjct: 121 AQILDIDLAEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLQHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|ZP_00821981.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia bercovieri ATCC 43970]
          Length = 240

 Score =  394 bits (1011), Expect = e-108
 Identities = 199/236 (84%), Positives = 218/236 (92%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGV+DK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVIDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ Q+EQ +GR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQQVEQRVGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+A+YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQ
Sbjct: 121 AKILDIDLAEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLQHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|ZP_00824975.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia mollaretii ATCC 43969]
          Length = 240

 Score =  392 bits (1007), Expect = e-108
 Identities = 198/236 (83%), Positives = 217/236 (91%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGV+DK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVIDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ Q+EQ +GR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQQVEQRVGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+ +YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQ
Sbjct: 121 AKILDIDLVEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLQHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|YP_070241.1| flagellar biosynthesis sigma factor FliA [Yersinia
           pseudotuberculosis IP 32953]
 ref|ZP_01496919.1| hypothetical protein YpseI_02002074 [Yersinia pseudotuberculosis IP
           31758]
 emb|CAH20954.1| RNA polymerase sigma factor for flagellar operon [Yersinia
           pseudotuberculosis IP 32953]
          Length = 240

 Score =  388 bits (997), Expect = e-106
 Identities = 196/236 (83%), Positives = 216/236 (91%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ Q+EQ +GR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQQVEQRVGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L I + +YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPL+ LL+ NLRQ
Sbjct: 121 AQVLDIGLVEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLKHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIEAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|YP_049839.1| flagellar biosynthesis sigma factor FliA [Erwinia carotovora subsp.
           atroseptica SCRI1043]
 emb|CAG74644.1| RNA polymerase sigma factor for flagellar operon [Erwinia
           carotovora subsp. atroseptica SCRI1043]
          Length = 240

 Score =  386 bits (991), Expect = e-106
 Identities = 195/236 (82%), Positives = 213/236 (90%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEG MDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLL+AVERYD
Sbjct: 1   MSDLYTAEGTMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLSAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           +LQGTAFTTYAVQRIRG+MLDELRSRDW PRSVRRNAREVAQA+ Q EQ+LGR  TE EV
Sbjct: 61  SLQGTAFTTYAVQRIRGSMLDELRSRDWAPRSVRRNAREVAQAMQQTEQQLGRTPTEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L I + DYRQ+LLDTNNSQLFSYDEWREEHGDS E + + ++  NPL QL++ NLR 
Sbjct: 121 AQTLNITLEDYRQILLDTNNSQLFSYDEWREEHGDSAEALLEGNEDANPLHQLMEGNLRH 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RVM+AIE LPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR KL
Sbjct: 181 RVMDAIENLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRVKL 236



>ref|ZP_01534355.1| RNA polymerase, sigma 28 subunit [Serratia proteamaculans 568]
 gb|EAV33746.1| RNA polymerase, sigma 28 subunit [Serratia proteamaculans 568]
          Length = 240

 Score =  385 bits (988), Expect = e-105
 Identities = 193/236 (81%), Positives = 215/236 (91%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWLRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           A+QGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRR+AREVAQ + QLEQ+LGR A+E EV
Sbjct: 61  AMQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRHAREVAQVMRQLEQQLGRPASEVEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L + + +YRQ+LLDTNNSQLFSYDEWREEHG+S E + + H+  NPL  LL+ NLRQ
Sbjct: 121 AQTLNLSLDEYRQILLDTNNSQLFSYDEWREEHGESAEPLLEGHEEANPLHHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV++AIE LPEREK+VLTLYYQEELNLKEIGAVL+VGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIDAIEALPEREKMVLTLYYQEELNLKEIGAVLDVGESRVSQLHSQAIKRLRARL 236



>ref|NP_405407.1| flagellar biosynthesis sigma factor FliA [Yersinia pestis CO92]
 ref|NP_669770.1| flagellar biosynthesis sigma factor FliA [Yersinia pestis KIM]
 ref|NP_992908.1| flagellar biosynthesis sigma factor FliA [Yersinia pestis biovar
           Microtus str. 91001]
 ref|ZP_01177952.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia pestis biovar Orientalis str. IP275]
 ref|YP_651131.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           Antiqua]
 ref|YP_648208.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           Nepal516]
 gb|AAM86021.1|AE013850_3 alternative sigma factor 28 [Yersinia pestis KIM]
 gb|AAS61785.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           biovar Microtus str. 91001]
 gb|ABG18608.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           Nepal516]
 gb|ABG13186.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           Antiqua]
 emb|CAL20483.1| RNA polymerase sigma factor for flagellar operon [Yersinia pestis
           CO92]
          Length = 240

 Score =  384 bits (987), Expect = e-105
 Identities = 194/236 (82%), Positives = 215/236 (91%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGI LLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIDLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ Q+EQ +GR ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQQVEQRVGRPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L I + +YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPL+ LL+ NLRQ
Sbjct: 121 AQVLDIGLVEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLKHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV++AIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIDAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|ZP_00798059.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia pestis Angola]
          Length = 240

 Score =  382 bits (981), Expect = e-105
 Identities = 193/236 (81%), Positives = 214/236 (90%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGI LLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIDLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ Q+EQ +G  ATE EV
Sbjct: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQQVEQRVGSPATEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L I + +YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPL+ LL+ NLRQ
Sbjct: 121 AQVLDIGLVEYRQILLDTNNSQLFSYDEWREEHGESVEPLLEGHEDANPLKHLLEGNLRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV++AIE LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIDAIEALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 236



>ref|NP_929222.1| flagellar biosynthesis sigma factor FliA [Photorhabdus luminescens
           subsp. laumondii TTO1]
 emb|CAE14248.1| RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 240

 Score =  377 bits (969), Expect = e-103
 Identities = 190/236 (80%), Positives = 214/236 (90%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW+RYVPLVRHEALRLQVRLPA VELDDLLQAGGIGLLNAVER+D
Sbjct: 1   MSDLYTAEGVMDKNSLWKRYVPLVRHEALRLQVRLPACVELDDLLQAGGIGLLNAVERFD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           +LQGTAFTTYAVQRIRGAMLDELRSRDW PRSVRRNAREV   I +LEQ+LGR A+E EV
Sbjct: 61  SLQGTAFTTYAVQRIRGAMLDELRSRDWAPRSVRRNAREVTHIIRKLEQDLGRPASEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+ +YRQ+LLDTNNSQLFSYDEW E HG+S E V ++    NPLQQLL+S++RQ
Sbjct: 121 AKELKIDLVEYRQILLDTNNSQLFSYDEWHEMHGESCEPVIEEGHETNPLQQLLESDVRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EAI++LPEREK+VLTLYYQEELNLKEIGAVLEVGESR+SQLHSQAIKRLR +L
Sbjct: 181 RVIEAIDSLPEREKMVLTLYYQEELNLKEIGAVLEVGESRISQLHSQAIKRLRARL 236



>sp|P52621|FLIA_YEREN RNA polymerase sigma factor for flagellar operon (Sigma-F factor)
           (Sigma-27) (Sigma-28)
 gb|AAC43394.1| FliA
          Length = 230

 Score =  377 bits (968), Expect = e-103
 Identities = 190/226 (84%), Positives = 207/226 (91%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD LQGTAFTTY
Sbjct: 1   MDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDRLQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDW PRSVRRNAREVA A+ ++EQ LGR ATE EVA+ L ID+ +
Sbjct: 61  AVQRIRGAMLDELRSRDWAPRSVRRNAREVASAMQKVEQRLGRPATEQEVAQNLDIDLTE 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQ+LLDTNNSQLFSYDEWREEHG+S+E + + H+  NPLQ LL+ NLRQRV+EAIE LP
Sbjct: 121 YRQILLDTNNSQLFSYDEWREEHGESVEPMLEGHEDANPLQHLLEGNLRQRVIEAIEALP 180

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           EREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 181 EREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 226



>gb|AAF33246.1|AF221596_2 FliA [Proteus mirabilis]
          Length = 240

 Score =  372 bits (956), Expect = e-102
 Identities = 187/236 (79%), Positives = 213/236 (90%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAEGVMDK+SLW+RYVPLVRHEALRLQV+LPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAEGVMDKNSLWERYVPLVRHEALRLQVKLPASVELDDLLQAGGIGLLNAVERYD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ++QG AFTTYAVQRIRG+MLDELRSRDW PRSVRRNAREV Q+I QLEQ+LGR  +E EV
Sbjct: 61  SMQGAAFTTYAVQRIRGSMLDELRSRDWAPRSVRRNAREVTQSIHQLEQDLGRPPSEQEV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L I++A+YRQ+LLDTNNSQLFSYDEW E +G+S E   D+   +NPLQ LL+S++RQ
Sbjct: 121 ADHLQIELAEYRQILLDTNNSQLFSYDEWHEIYGESCEPSQDEDHDDNPLQMLLESDIRQ 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV++AIE LPEREK+VLTLYYQEELNLKEIGAVL VGESRVSQLHSQAIKRLR +L
Sbjct: 181 RVIDAIELLPEREKMVLTLYYQEELNLKEIGAVLNVGESRVSQLHSQAIKRLRARL 236



>emb|CAB46360.1| FliA, sigma 28 [Xenorhabdus nematophila]
          Length = 230

 Score =  360 bits (923), Expect = 4e-98
 Identities = 182/226 (80%), Positives = 203/226 (89%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDK+SLW+RYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVER+D++QGTAFTTY
Sbjct: 1   MDKNSLWKRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERFDSMQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDW PRSVRRNAREV Q I +LEQELGR A+E EVA+ L I++ +
Sbjct: 61  AVQRIRGAMLDELRSRDWAPRSVRRNAREVTQTIRKLEQELGRPASEQEVAKELKINLIE 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQ+LLDTNNSQLFSYDEW E HG+S E V ++    NPLQQLL+ +LRQRV+  IE+LP
Sbjct: 121 YRQILLDTNNSQLFSYDEWHEIHGESCEPVIEEEHETNPLQQLLEGDLRQRVINIIESLP 180

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           EREK+VLTLYYQEELNLKEIGAVL VGESRVSQLHSQAIKRLR +L
Sbjct: 181 EREKMVLTLYYQEELNLKEIGAVLNVGESRVSQLHSQAIKRLRARL 226



>prf||2209422A fliA gene
          Length = 237

 Score =  360 bits (923), Expect = 4e-98
 Identities = 188/236 (79%), Positives = 207/236 (87%), Gaps = 3/236 (1%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           M+ LYTAE  MDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD
Sbjct: 1   MSDLYTAER-MDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 59

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
           ALQGTAFTTYAVQRI   MLDELR RDW PR +RRNAREVA A+ ++EQ LG  ATE EV
Sbjct: 60  ALQGTAFTTYAVQRI-APMLDELRQRDWAPRRIRRNAREVASAMQKVEQRLGAPATEQEV 118

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A+ L ID+ +YRQ+LLDTNNSQLFSYDEWREEHG ++E + + H+  NPLQ LL+ NLRQ
Sbjct: 119 AQNLDIDLTEYRQILLDTNNSQLFSYDEWREEHGRTVEPMLEGHEDANPLQHLLEGNLRQ 178

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           RV+EA E LPEREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 179 RVIEA-EALPEREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 233



>gb|AAB38522.1| flagellin sigma factor [Yersinia enterocolitica (type 0:8)]
          Length = 229

 Score =  358 bits (920), Expect = 1e-97
 Identities = 183/226 (80%), Positives = 201/226 (88%), Gaps = 1/226 (0%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDK+SLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY
Sbjct: 1   MDKNSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRI   MLDELR RDW PR +RRNAREVA A+ ++EQ LG  ATE EVA+ L ID+ +
Sbjct: 61  AVQRI-APMLDELRQRDWAPRRLRRNAREVASAMQKVEQRLGAPATEQEVAQNLDIDLTE 119

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLP 190
           YRQ+LLDTNNSQLFSYDEWREEHG ++E + + H+  NPLQ LL+ NLRQRV+EAIE LP
Sbjct: 120 YRQILLDTNNSQLFSYDEWREEHGRTVEPMLEGHEDANPLQHLLEGNLRQRVIEAIEALP 179

Query: 191 EREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           EREK+VLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLR +L
Sbjct: 180 EREKMVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRARL 225



>gb|AAY89702.1| FliA [Escherichia coli]
          Length = 157

 Score =  313 bits (802), Expect = 5e-84
 Identities = 157/157 (100%), Positives = 157/157 (100%)

Query: 11  MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 70
           MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY
Sbjct: 1   MDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTY 60

Query: 71  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 130
           AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD
Sbjct: 61  AVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIAD 120

Query: 131 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE 167
           YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE
Sbjct: 121 YRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRE 157



>gb|EAG49173.1| unknown [environmental sequence]
          Length = 158

 Score =  288 bits (736), Expect = 2e-76
 Identities = 144/158 (91%), Positives = 152/158 (96%)

Query: 60  DALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119
           DALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQA+GQLEQELGRNATETE
Sbjct: 1   DALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAMGQLEQELGRNATETE 60

Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLR 179
           VA RL I + +YRQMLLDTNNSQLFSYDEWREEHGDSIELVT++HQ+ENPLQQLL+ NLR
Sbjct: 61  VAARLAIPVQEYRQMLLDTNNSQLFSYDEWREEHGDSIELVTEEHQQENPLQQLLEGNLR 120

Query: 180 QRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVG 217
           QRVM+AIE LPEREKLVLTLYYQEELNLKEIGAVLEVG
Sbjct: 121 QRVMDAIEALPEREKLVLTLYYQEELNLKEIGAVLEVG 158



>ref|ZP_00824848.1| COG1191: DNA-directed RNA polymerase specialized sigma subunit
           [Yersinia mollaretii ATCC 43969]
          Length = 241

 Score =  277 bits (708), Expect = 4e-73
 Identities = 138/239 (57%), Positives = 178/239 (74%)

Query: 1   MNSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYD 60
           MN +YT  GV+ K  LW +Y  LVRHEALRLQ RLPASVELDDL+QAG IGLL A+E +D
Sbjct: 1   MNGIYTHNGVVKKDELWPKYGFLVRHEALRLQARLPASVELDDLIQAGAIGLLTAIEHFD 60

Query: 61  ALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEV 120
             +G A + Y  Q++R AM+DELR RDWVPR VR NAREVA  I ++EQE G  ATE +V
Sbjct: 61  PKKGIAISIYITQKVRWAMIDELRERDWVPRRVRSNAREVAAVIQRVEQESGTVATEADV 120

Query: 121 AERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQ 180
           A  +G+ + +Y+QML DTN+SQL+S DE +EE  DSIE     H+  NPL +L+  NL +
Sbjct: 121 AAAMGVTLREYQQMLADTNSSQLYSLDELQEELSDSIEQPDIQHEMLNPLHELMKENLTK 180

Query: 181 RVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
            + + I+ LPER++L+L LYYQ++LN+KE+G +LE+ E+RVSQLHSQAIKRLR +L  L
Sbjct: 181 HISQEIKALPERDQLLLNLYYQQDLNMKEVGILLEITETRVSQLHSQAIKRLRARLDAL 239



>ref|ZP_00417386.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Azotobacter
           vinelandii AvOP]
 gb|EAM06171.1| Sigma-70 region 3:Sigma-70 region 2:Sigma-70 region 4 [Azotobacter
           vinelandii AvOP]
          Length = 231

 Score =  268 bits (684), Expect = 2e-70
 Identities = 139/235 (59%), Positives = 177/235 (75%), Gaps = 4/235 (1%)

Query: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63
           +YTA+G + +  L + Y+PLVR +AL LQ RLPASVELDDL+QAG IGLL+A+ RYDA Q
Sbjct: 1   MYTAQGKIRQRDLLEEYLPLVRRQALNLQTRLPASVELDDLIQAGTIGLLDALSRYDAAQ 60

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123
           G +F T+A QR+RGAMLDELRSRDWVPRSVRRNAR +   + QLEQ LGR A E E+A  
Sbjct: 61  GASFATFASQRVRGAMLDELRSRDWVPRSVRRNARALEDTLRQLEQRLGRPAEEREIATS 120

Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183
           +G+D+A+YRQ+LLD+N SQL + D+  E+  D++ +        +P  +L +    +R++
Sbjct: 121 MGLDLAEYRQLLLDSNGSQLVAIDDLGEDEVDAMSV----GHYASPFVELAEGRDLERLV 176

Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGK 238
           +AIE LPEREKLVL LYYQE+LNLKEIGAVL V ESRV QLHSQA+ RLR  L +
Sbjct: 177 KAIEALPEREKLVLGLYYQEDLNLKEIGAVLGVSESRVCQLHSQAVARLRNGLAE 231



>ref|YP_453739.1| RNA polymerase sigma factor for flagellar operon FliA [Sodalis
           glossinidius str. 'morsitans']
 dbj|BAE73334.1| RNA polymerase sigma factor for flagellar operon FliA [Sodalis
           glossinidius str. 'morsitans']
          Length = 241

 Score =  265 bits (677), Expect = 2e-69
 Identities = 143/239 (59%), Positives = 176/239 (73%), Gaps = 5/239 (2%)

Query: 1   MNSLYTAEG-VMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERY 59
           M+ +Y  +G + D   LWQ+Y P++RHEALRLQVRLPASVEL+DL+QAG IGLL A++ +
Sbjct: 1   MDVIYNHQGRLADDRGLWQQYAPIIRHEALRLQVRLPASVELEDLIQAGMIGLLAAIDSF 60

Query: 60  DALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETE 119
           DA QG +FTTYA  RIR  MLDELR RDWVPRSVRRNARE+A AI +LEQ LG N +E +
Sbjct: 61  DAAQGASFTTYARSRIRWGMLDELRERDWVPRSVRRNAREIAAAIQRLEQRLGANTSEQQ 120

Query: 120 VAERLGIDIADYRQMLLDTNNSQLFSYDEW--REEHGDSIELVTDDHQRENPLQQLLDSN 177
           +A+ LG+ +  Y+ ML +TN SQLFS DE   +E  G    L  D  Q  +P Q L+   
Sbjct: 121 IADELGVSLTAYQTMLHETNCSQLFSLDELMAQEAQGTGPALPADAGQ--DPFQLLMAGG 178

Query: 178 LRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           LR++V + I  LPERE+L+L LYY +ELNLKEIG VL VGESRVSQLHS AIKRLR +L
Sbjct: 179 LRKQVKDEIGRLPEREQLLLNLYYHQELNLKEIGEVLGVGESRVSQLHSLAIKRLRARL 237



>ref|YP_574061.1| sigma 28 (Flagella/Sporulation) [Chromohalobacter salexigens DSM
           3043]
 gb|ABE59362.1| sigma 28 (Flagella/Sporulation) [Chromohalobacter salexigens DSM
           3043]
          Length = 232

 Score =  263 bits (673), Expect = 4e-69
 Identities = 138/233 (59%), Positives = 174/233 (74%), Gaps = 3/233 (1%)

Query: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63
           +YTA+G +D+H+L ++Y+PLVR  AL LQVRLPASVELDDL+QAG +GLL+A+ER+DA Q
Sbjct: 1   MYTAQGKIDQHALLEQYMPLVRRHALALQVRLPASVELDDLIQAGMVGLLDALERFDATQ 60

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123
           G +F+T+A QR+RGAM+DELRSRDW+PRSVRR+AR + QA+ +LEQ LGR   E E+A  
Sbjct: 61  GASFSTFANQRVRGAMIDELRSRDWMPRSVRRSARALDQAVHKLEQTLGRAPDEREIANA 120

Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183
           LG+ + +Y Q+LLD NN  L  +D+   E G   E    D     P   LL  + R  ++
Sbjct: 121 LGMSVEEYHQLLLDANNGYLLGFDDVVSELG---EPPGGDTAPATPHDALLQGDARTHLV 177

Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
            AIE LPEREKL+L LYYQEELNLKEIGAVL V ESRV QLHSQA+ RLR +L
Sbjct: 178 AAIEHLPEREKLLLGLYYQEELNLKEIGAVLGVSESRVCQLHSQAVARLRARL 230



>ref|NP_871202.1| hypothetical protein WGLp199 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 dbj|BAC24345.1| fliA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 246

 Score =  254 bits (649), Expect = 3e-66
 Identities = 130/240 (54%), Positives = 182/240 (75%), Gaps = 6/240 (2%)

Query: 2   NSLYTAEGVM---DKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVER 58
           N++Y+ +G +   D + LW++Y P++R EALRLQV+LP SVELDDL+QAG IG L+A++ 
Sbjct: 4   NTMYSHQGYLLKKDDNFLWKKYTPMIRREALRLQVKLPGSVELDDLIQAGMIGFLSAIDN 63

Query: 59  YDALQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATET 118
           +D  QG +F TYA  R+R +MLDELR RDWVPRSVRRNAR++A AI +LEQ LG +A+E 
Sbjct: 64  FDINQGASFPTYARSRVRWSMLDELRERDWVPRSVRRNARDIASAIQRLEQRLGSSASEK 123

Query: 119 EVAERLGIDIADYRQMLLDTNNSQLFSYDEWREEH--GDSIELVTDDHQRENPLQQLLDS 176
           ++A+ L I + +Y++ML +TN  Q+FS DE   +   G     +  DH ++ P Q LL +
Sbjct: 124 QIAKELKISLCEYQKMLQETNCGQIFSLDELNNQEIIGSFGMNIPIDHSKD-PCQLLLIN 182

Query: 177 NLRQRVMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           +L++++++ I+ LP+REK++L LYYQ+ELNLKEIG VL VGESRVSQLHS AIKRLR++L
Sbjct: 183 SLKKKIIKEIQKLPKREKILLNLYYQQELNLKEIGEVLGVGESRVSQLHSLAIKRLRSRL 242



>dbj|BAE19818.1| RNA polymerase sigma factor for flagellar operon [Edwardsiella
           tarda]
          Length = 168

 Score =  248 bits (633), Expect = 2e-64
 Identities = 123/168 (73%), Positives = 146/168 (86%)

Query: 29  LRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFTTYAVQRIRGAMLDELRSRDW 88
           +RLQVRLPASVELDDLLQAGGIGLL+AVERYDA+QGTAFTTYA+QRIRGAMLDELRSRDW
Sbjct: 1   VRLQVRLPASVELDDLLQAGGIGLLHAVERYDAMQGTAFTTYAIQRIRGAMLDELRSRDW 60

Query: 89  VPRSVRRNAREVAQAIGQLEQELGRNATETEVAERLGIDIADYRQMLLDTNNSQLFSYDE 148
           VPRSVRRNAR V+ A+ + EQ LGR   ++E+A+ +GI + +Y+Q+LLDTN SQLFSYDE
Sbjct: 61  VPRSVRRNARGVSAAMQRAEQRLGRTPGDSEIAQEMGIPLEEYQQILLDTNTSQLFSYDE 120

Query: 149 WREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVMEAIETLPEREKLV 196
           WRE+HGDS E V +  +  NPL+QLL+S+LR RV+ AIE LPEREKLV
Sbjct: 121 WREDHGDSAEPVLEQSEEANPLRQLLESDLRGRVIAAIEALPEREKLV 168



>ref|ZP_01503755.1| RNA polymerase, sigma 28 subunit [Burkholderia phymatum STM815]
 gb|EAU96378.1| RNA polymerase, sigma 28 subunit [Burkholderia phymatum STM815]
          Length = 244

 Score =  243 bits (620), Expect = 6e-63
 Identities = 126/233 (54%), Positives = 167/233 (71%)

Query: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63
           +Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  RY   Q
Sbjct: 1   MYNAQGKISQADVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAASRYKEDQ 60

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123
           G  F TYA QRIRGAMLDELRS DW+PRS+RR +REV  A+ Q+EQ LGR+A+ETE+AE 
Sbjct: 61  GAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVESAVHQVEQSLGRSASETEIAEH 120

Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183
           L + + +Y+ ML D + SQL  Y+++     D   L        +PL  LLD +LR  ++
Sbjct: 121 LKMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDESLRGALV 180

Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           EAI+ LPEREKL+++LYY+  LNL+EIGAV+EV ESRV QLHSQA+ RLRT+L
Sbjct: 181 EAIDRLPEREKLLMSLYYERGLNLREIGAVMEVSESRVCQLHSQAVARLRTRL 233



>gb|EAH94150.1| unknown [environmental sequence]
          Length = 325

 Score =  243 bits (619), Expect = 8e-63
 Identities = 124/238 (52%), Positives = 171/238 (71%)

Query: 2   NSLYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDA 61
           +++Y A+G + +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGLL+A  RY  
Sbjct: 78  STMYNAQGKISQADVLTKYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLLDAASRYKE 137

Query: 62  LQGTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVA 121
            QG  F TYA QRIRGAMLDELRS DW+PRS+RR +REV  A+ ++EQ LGR+A+ETE+A
Sbjct: 138 DQGAQFETYASQRIRGAMLDELRSNDWLPRSLRRTSREVESAVHKVEQNLGRSASETEIA 197

Query: 122 ERLGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQR 181
           E L + + +Y+ ML D + SQL  Y+++     D   L        +PL  LLD +LR  
Sbjct: 198 EHLQMPLDEYQSMLQDLHGSQLIYYEDFDRSADDEPFLDRYCVDHSDPLSALLDDSLRSA 257

Query: 182 VMEAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKLGKL 239
           ++EAI+ LPEREKL+++LYY+  +NL+EIGAV+EV ESRV QLHSQA+ RLRT+L ++
Sbjct: 258 LIEAIDRLPEREKLLMSLYYERGMNLREIGAVMEVSESRVCQLHSQAVARLRTRLREM 315



>ref|YP_367620.1| flagellar biosynthesis sigma factor FliA [Burkholderia sp. 383]
 gb|ABB06976.1| sigma 28 (Flagella/Sporulation) [Burkholderia sp. 383]
          Length = 244

 Score =  242 bits (618), Expect = 1e-62
 Identities = 125/233 (53%), Positives = 167/233 (71%)

Query: 4   LYTAEGVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQ 63
           +Y A+G M +  +  +Y PLVR   L+L  ++PASV+LDDL+QAG IGL++A  RY   Q
Sbjct: 2   MYNAQGKMSQADVLAQYAPLVRRLGLQLVAKMPASVDLDDLIQAGMIGLMDAAGRYKEDQ 61

Query: 64  GTAFTTYAVQRIRGAMLDELRSRDWVPRSVRRNAREVAQAIGQLEQELGRNATETEVAER 123
           G  F TYA QRIRGAMLDELRS DW+PRS+R+ +REV  A+ Q+EQ LGR+A+ETE+A+ 
Sbjct: 62  GAQFETYATQRIRGAMLDELRSNDWLPRSLRKTSREVEHAVHQVEQNLGRSASETEIAQH 121

Query: 124 LGIDIADYRQMLLDTNNSQLFSYDEWREEHGDSIELVTDDHQRENPLQQLLDSNLRQRVM 183
           L + + +Y+ ML D + SQL  Y+++     D   L        +PL  LLD +LR+ ++
Sbjct: 122 LNMPLDEYQGMLQDLHGSQLIYYEDFDRAADDEPFLDRYRVDHADPLSALLDEHLREALV 181

Query: 184 EAIETLPEREKLVLTLYYQEELNLKEIGAVLEVGESRVSQLHSQAIKRLRTKL 236
           EAIE LPEREKL+++LYY+  LNL+EIGAVLEV ESRV QLHSQA+ RLR +L
Sbjct: 182 EAIERLPEREKLLMSLYYERGLNLREIGAVLEVSESRVCQLHSQAVARLRARL 234



>ref|YP_