Program blastp blastn blastx tblastn tblastx Database EcoProt EcoGene E. coli K-12 MG1655 M54 Genome E. coli K-12 MG1655 M56 Genome 14 E. coli Complete Proteomes 14 E. coli Complete Genomes 12 E. coli Unfinished Genomes Salmonella typhimurium LT2 Genome 5 Salmonella Complete Genomes 17 Enterobacteriales Complete Genomes 300 Microbial Unfinished Genomes UniProt UniRef100 Proteome EBI SP+TR Complete SwissProt and TrEMBL NCBI NR Non-Redundant Protein Sequence Database NCBI NR + Env_NR: NR plus Environmental Proteome NCBI NT Non-Redundant DNA Sequence Database
Enter sequence below in FASTA format Or load it from disk
Set subsequence: From To
The query sequence is not filtered for low complexity regions by default. Please be careful interpreting your results, or add the filter. Filter Low complexity Mask for lookup table only
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Graphical Overview Alignment view Pairwise master-slave with identities master-slave without identities flat master-slave with identities flat master-slave without identities BLAST XML Hit Table Descriptions 0 10 50 100 250 500 Alignments 0 10 50 100 250 500 Color schema No color schema Color schema 1 Color schema 2 Color schema 3 Color schema 4 Color schema 5 Color schema 6
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Other advanced options:
