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Verified Proteins Starts
866 E. coli K-12 Proteins With Starts Verified by N-terminal Protein Sequencing.
Please note that this file is now obsolete, replaced by a dynamically-generated report:
Verified Set
The updated citations can now be found on the "Verified" pop-up window on the GenePages.
For a complete listing of the updated Verified Set citations, please contact the EcoGene staff.
Gene name
Number of amino acids removed from N-terminus
EG Accession number
Citations
accA
1 aa cleaved
EG11647
Li S.J., Cronan J.E., Jr. (1992) The genes encoding the two carboxyltransferase subunits of Escherichia coli acetyl-CoA carboxylase. J Biol Chem 267:16841-16847
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
accB
0 aa cleaved
EG10275
Li S.J., Cronan J.E., Jr. (1992) The gene encoding the biotin carboxylase subunit of Escherichia coli acetyl-CoA carboxylase. J Biol Chem 267:855-863
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
accC
0 aa cleaved
EG10276
Kondo H., Shiratsuchi K., Yoshimoto T., Masuda T., Kitazono A., Tsuru D., Anai M., Sekiguchi M., Tanabe T. (1991) Acetyl-CoA carboxylase from Escherichia coli: gene organization and nucleotide sequence of the biotin carboxylase subunit. Proc Natl Acad Sci U S A 88:9730-9733
Li S.J., Cronan J.E., Jr. (1992) The gene encoding the biotin carboxylase subunit of Escherichia coli acetyl-CoA carboxylase. J Biol Chem 267:855-863
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
aceA
0 aa cleaved
EG10022
Matsuoka M., McFadden B.A. (1988) Isolation, hyperexpression, and sequencing of the aceA gene encoding isocitrate lyase in Escherichia coli. J Bacteriol 170:4528-4536
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
aceE
1 aa cleaved
EG10024
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
aceF
1 aa cleaved
EG10025
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
aceK
1 aa cleaved
EG10026
Klumpp D.J., Plank D.W., Bowdin L.J., Stueland C.S., Chung T., LaPorte D.C. (1988) Nucleotide sequence of aceK, the gene encoding isocitrate dehydrogenase kinase/phosphatase. J Bacteriol 170:2763-2769
acnA
1 aa cleaved
EG11325
Prodromou C., Haynes M.J., Guest J.R. (1991) The aconitase of Escherichia coli: purification of the enzyme and molecular cloning and map location of the gene (acn). J Gen Microbiol 137:2505-2515
acnB
0 aa cleaved
EG12316
Bradbury A.J., Gruer M.J., Rudd K.E., Guest J.R. (1996) The second aconitase (AcnB) of Escherichia coli. Microbiology 142:389-400
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
acpP
1 aa cleaved
EG50003
Vanaman T.C., Wakil S.J., Hill R.L. (1968) The complete amino acid sequence of the acyl carrier protein of Escherichia coli. J Biol Chem 243:6420-6431
Jackowski S., Rock C.O. (1987) Altered molecular form of acyl carrier protein associated with beta- ketoacyl-acyl carrier protein synthase II (fabF) mutants. J Bacteriol 169:1469-1473
Issartel J.P., Koronakis V., Hughes C. (1991) Activation of Escherichia coli prohaemolysin to the mature toxin by acyl carrier protein-dependent fatty acylation. Nature 351:759-761.Niki H., Imamura R., Kitaoka M., Yamanaka K., Ogura T., Hiraga S. (1992) E.coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities. EMBO J 11:5101-5109
Ohba A., Mizushima T., Katayama T., Sekimizu K.(1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
acpS
1 aa cleaved
EG10247
Lambalot R.H., Walsh C.T. (1995) Cloning, overproduction, and characterization of the Escherichia coli holo-acyl carrier protein synthase. J Biol Chem 270:24658-24661
ada
0 aa cleaved
EG10029
Nakabeppu Y., Kondo H., Kawabata S., Iwanaga S., Sekiguchi M. (1985) Purification and structure of the intact Ada regulatory protein of Escherichia coli K12, O6-methylguanine-DNA methyltransferase. J Biol Chem 260:7281-7288
adhC
0 aa cleaved
EG50010
Gutheil W.G., Holmquist B., Vallee B.L. (1992) Purification, characterization, and partial sequence of the glutathione-dependent formaldehyde dehydrogenase from Escherichia coli: a class III alcohol dehydrogenase. Biochemistry 31:475-481
adhE
1 aa cleaved
EG10031
Goodlove P.E., Cunningham P.R., Parker J., Clark D.P. (1989) Cloning and sequence analysis of the fermentative alcohol-dehydrogenase-encoding gene of Escherichia coli. Gene 85:209-214
Kessler D., Leibrecht I., Knappe J. (1991) Pyruvate-formate-lyase-deactivase and acetyl-CoA reductase activities of Escherichia coli reside on a polymeric protein particle encoded by adhE. FEBS Lett 281:59-63
adhP
0 aa cleaved
EG12622
Harayama S., unpublished in P39451
adiA
0 aa cleaved
EG11501
Sabo D.L., Fischer E.H. (1974) Chemical properties of Escherichia coli lysine decarboxylase including a segment of its pyridoxal 5'-phosphate binding site. Biochemistry 13:670-676
adk
0 aa cleaved
EG10032
Saint Girons I., Gilles A.M., Margarita D., Michelson S., Monnot M., Fermandjian S., Danchin A., Barzu O. (1987) Structural and catalytic characteristics of Escherichia coli adenylate kinase. J Biol Chem 262:622-629
Lu Q., Inouye M. (1996) Adenylate kinase complements nucleoside diphosphate kinase deficiency in nucleotide metabolism. Proc Natl Acad Sci U S A 93:5720-5
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
aes
0 aa cleaved
EG11101
Kanaya S., Koyanagi T., Kanaya E. (1998) An esterase from Escherichia coli with a sequence similarity to hormone- sensitive lipase. Biochem J 332:75-80
agp
22 aa cleaved
EG10033
Pradel E., Marck C., Boquet P.L. (1990) Nucleotide sequence and transcriptional analysis of the Escherichia coli agp gene encoding periplasmic acid glucose-1-phosphatase. J Bacteriol 172:802-807
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ahpC
1 aa cleaved
EG11384
Ueshima R., Fujita N., Ishihama A. (1992) Identification of Escherichia coli proteins cross-reacting with antibodies against region 2.2 peptide of RNA polymerase sigma subunit. Biochem Biophys Res Commun 184:634-639
Cha M.K., Kim H.K., Kim I.H. (1995) Thioredoxin-linked "thiol peroxidase" from periplasmic space of Escherichia coli. J Biol Chem 270:28635-28641
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
Garbe T.R., Kobayashi M., Yukawa H. (2000) Indole-inducible proteins in bacteria suggest membrane and oxidant toxicity. Arch Microbiol 173:78-82
alaS
1 aa cleaved
EG10034
Herlihy W.C., Royal N.J., Biemann K., Putney S.D., Schimmel P.R. (1980) Mass spectra of partial protein hydrolysates as a multiple phase check for long polypeptides deduced from DNA sequences: NH2-terminal segment of alanine tRNA synthetase. Proc Natl Acad Sci U S A 77:6531-6535
aldA
1 aa cleaved
EG10035
Hidalgo E., Chen Y.M., Lin E.C., Aguilar J. (1991) Molecular cloning and DNA sequencing of the Escherichia coli K-12 ald gene encoding aldehyde dehydrogenase. J Bacteriol 173:6118-6123
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Rompf A., Schmid R., Jahn D. (1998) Changes in protein synthesis as a consequence of heme depletion in Escherichia coli. Curr Microbiol 37:226-230
aldB
0 aa cleaved
EG12292
Ho K.K., Weiner H. (2005) Isolation and characterization of an aldehyde dehydrogenase encoded by the aldB gene of Escherichia coli. J Bacteriol 187:1067-73
alkA
0 aa cleaved
EG11222
Nakabeppu Y., Miyata T., Kondo H., Iwanaga S., Sekiguchi M. (1984) Structure and expression of the alkA gene of Escherichia coli involved in adaptive response to alkylating agents. J Biol Chem 259:13730-13736
alkB
0 aa cleaved
EG10037
Kondo H., Nakabeppu Y., Kataoka H., Kuhara S., Kawabata S., Sekiguchi M. (1986) Structure and expression of the alkB gene of Escherichia coli related to the repair of alkylated DNA. J Biol Chem 261:15772-15777
amn
0 aa cleaved
EG10039
Leung H.B., Kvalnes-Krick K.L., Meyer S.L., deRiel J.K., Schramm V.L. (1989) Structure and regulation of the AMP nucleosidase gene (amn) from Escherichia coli. Biochemistry 28:8726-8733
ampC
19 aa cleaved
EG10040
Jaurin B., Grundstrom T. (1981) ampC cephalosporinase of Escherichia coli K-12 has a different evolutionary origin from that of beta-lactamases of the penicillinase type. Proc Natl Acad Sci U S A 78:4897-4901
ansB
22 aa cleaved
EG10046
Maita T., Morokuma K., Matsuda G. (1979) Amino acid sequences of the tryptic peptides from carboxymethylated L- asparaginase from Escherichia coli. Hoppe Seylers Z Physiol Chem 360:1483-1495
Maita T., Matsuda G. (1980) The primary structure of L-asparaginase from Escherichia coli. Hoppe Seylers Z Physiol Chem 361:105-117
aphA
25 aa cleaved
EG11934
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Thaller M.C., Schippa S., Bonci A., Cresti S., Rossolini G.M. (1997) Identification of the gene (aphA) encoding the class B acid phosphatase/phosphotransferase of Escherichia coli MG1655 and characterization of its product. FEMS Microbiol Lett 146:191-198
Reshetnyak E., d'Alencon E., Kern R., Taghbalout A., Guillaud P., Kohiyama M. (1999) Hemi-methylated oriC DNA binding activity found in non-specific acid phosphatase. Mol Microbiol 31:167-175
appA
22 aa cleaved
EG10049
Dassa J., Marck C., Boquet P.L. (1990) The complete nucleotide sequence of the Escherichia coli gene appA reveals significant homology between pH 2.5 acid phosphatase and glucose-1-phosphatase. J Bacteriol 172:5497-5500
Golovan S., Wang G., Zhang J., Forsberg C.W. (2000) Characterization and overproduction of the Escherichia coli appA encoded bifunctional enzyme that exhibits both phytase and acid phosphatase activities. Can J Microbiol 46:59-71
Greiner R., Konietzny U., Jany K.D. (1993) Purification and characterization of two phytases from Escherichia coli. Arch Biochem Biophys 303:107-113
apt
0 aa cleaved
EG10051
Zhang X., Zhu L., Deutscher M.P. (1998) Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily. J Bacteriol 180:2779-2781
araB
1 aa cleaved
EG10053
Lee N., Carbon J. (1977) Nucleotide sequence of the 5' end of araBAD operon messenger RNA in Escherichia coli B/r. Proc Natl Acad Sci U S A 74:49-53
araC
1 aa cleaved
EG10054
Wallace R.G., Lee N., Fowler A.V. (1980) The araC gene of Escherichia coli: transcriptional and translational start-points and complete nucleotide sequence. Gene 12:179-190
araF
23 aa cleaved
EG10057
Hogg R.W., Hermodson M.A. (1977) Amino acid sequence of the L-arabinose-binding protein from Escherichia coli B/r. J Biol Chem 252:5135-5141
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
arcA
0 aa cleaved
EG10061
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
argA
1 aa cleaved
EG10063
Brown K., Finch P.W., Hickson I.D., Emmerson P.T. (1987) Complete nucleotide sequence of the Escherichia coli argA gene. Nucleic Acids Res 15:10586
argD
1 aa cleaved
EG10066
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Ledwidge R., Blanchard J.S. (1999) The dual biosynthetic capability of N-acetylornithine aminotransferase in arginine and lysine biosynthesis. Biochemistry 38:3019-3024
argF
1 aa cleaved
EG10067
Falmagne P., Portetelle D., Stalon V. (1985) Immunological and structural relatedness of catabolic ornithine carbamoyltransferases and the anabolic enzymes of enterobacteria. J Bacteriol 161:714-719
argG
1 aa cleaved
EG10068
Van Vliet F., Crabeel M., Boyen A., Tricot C., Stalon V., Falmagne P., Nakamura Y., Baumberg S., Glansdorff N. (1990) Sequences of the genes encoding argininosuccinate synthetase in Escherichia coli and Saccharomyces cerevisiae: comparison with methanogenic archaebacteria and mammals. Gene 95:99-104
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
argI
1 aa cleaved
EG10069
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
argP
0 aa cleaved
EG10490
Thony B., Hwang D.S., Fradkin L., Kornberg A. (1991) iciA, an Escherichia coli gene encoding a specific inhibitor of chromosomal initiation of replication in vitro. Proc Natl Acad Sci U S A 88:4066-4070
argR
0 aa cleaved
EG10070
Lim D.B., Oppenheim J.D., Eckhardt T., Maas W.K. (1987) Nucleotide sequence of the argR gene of Escherichia coli K-12 and isolation of its product, the arginine repressor. Proc Natl Acad Sci U S A 84:6697-6701
argS
0 aa cleaved
EG10071
Eriani G., Dirheimer G., Gangloff J. (1989) Isolation and characterization of the gene coding for Escherichia coli arginyl-tRNA synthetase. Nucleic Acids Res 17:5725-5736
argT
22 aa cleaved
EG10072
Nonet M.L., Marvel C.C., Tolan D.R. (1987) The hisT-purF region of the Escherichia coli K-12 chromosome. Identification of additional genes of the hisT and purF operons. J Biol Chem 262:12209-12217
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
arnA
0 aa cleaved
EG14091
Karzai A.W., Sauer R.T. (2001) Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci U S A 98:3040-4
aroA
0 aa cleaved
EG10073
Duncan K., Lewendon A., Coggins J.R. (1984) The complete amino acid sequence of Escherichia coli 5-enolpyruvylshikimate 3-phosphate synthase. FEBS Lett 170:59-63
aroC
1 aa cleaved
EG10075
White P.J., Millar G., Coggins J.R. (1988) The overexpression, purification and complete amino acid sequence of chorismate synthase from Escherichia coli K12 and its comparison with the enzyme from Neurospora crassa. Biochem J 251:313-322
aroD
0 aa cleaved
EG10076
Duncan K., Chaudhuri S., Campbell M.S., Coggins J.R. (1986) The overexpression and complete amino acid sequence of Escherichia coli 3-dehydroquinase. Biochem J 238:475-483
aroE
0 aa cleaved
EG10077
Anton I.A., Coggins J.R. (1988) Sequencing and overexpression of the Escherichia coli aroE gene encoding shikimate dehydrogenase. Biochem J 249:319-326
aroF
0 aa cleaved
EG10078
Shultz J., Hermodson M.A., Herrmann K.M. (1981) A comparison of the amino-terminal sequences of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase isozymes from Escherichia coli. FEBS Lett 131:108-110
Herrmann K.M., Shultz J., Hermodson M.A. (1980) Sequence homology between the tyrosine-sensitive 3-deoxy-D-arabino- heptulosonate 7-phosphate synthase from Escherichia coli and hemerythrin from Sipunculida. J Biol Chem 255:7079-7081
Shultz J., Hermodson M.A., Garner C.C., Herrmann K.M. (1984) The nucleotide sequence of the gene of Escherichia coli and the amino acid sequence of the encoded protein, the tyrosine-sensitive 3- deoxy-D-arabino-heptulosonate 7-phosphate synthase. J Biol Chem 259:9655-9661
aroG
0 aa cleaved
EG10079
Shultz J., Hermodson M.A., Herrmann K.M. (1981) A comparison of the amino-terminal sequences of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase isozymes from Escherichia coli. FEBS Lett 131:108-110
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
aroH
0 aa cleaved
EG10080
Shultz J., Hermodson M.A., Herrmann K.M. (1981) A comparison of the amino-terminal sequences of 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase isozymes from Escherichia coli. FEBS Lett 131:108-110
Zurawski G., Gunsalus R.P., Brown K.D., Yanofsky C. (1981) Structure and regulation of aroH, the structural gene for the tryptophan-repressible 3-deoxy-D-arabino-heptulosonic acid-7-phosphate synthetase of Escherichia coli. J Mol Biol 145:47-73
aroK
1 aa cleaved
EG10081
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
aroL
1 aa cleaved
EG10082
DeFeyter R.C., Pittard J. (1986) Purification and properties of shikimate kinase II from Escherichia coli K-12. J Bacteriol 165:331-333
Millar G., Lewendon A., Hunter M.G., Coggins J.R. (1986) The cloning and expression of the aroL gene from Escherichia coli K12. Purification and complete amino acid sequence of shikimate kinase II, the aroL-gene product. Biochem J 237:427-437
artI
19 aa cleaved
EG11625
Wissenbach U., Six S., Bongaerts J., Ternes D., Steinwachs S., Unden G. (1995) A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transport. Mol Microbiol 17:675-686
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
artJ
19 aa cleaved
EG11628
Wissenbach U., Six S., Bongaerts J., Ternes D., Steinwachs S., Unden G. (1995) A third periplasmic transport system for L-arginine in Escherichia coli: molecular characterization of the artPIQMJ genes, arginine binding and transport. Mol Microbiol 17:675-686
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
asd
0 aa cleaved
EG10088
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
asnB
1 aa cleaved
EG10092
Boehlein S.K., Richards N.G., Schuster S.M. (1994) Glutamine-dependent nitrogen transfer in Escherichia coli asparagine synthetase B. Searching for the catalytic triad. J Biol Chem 269:7450-7457
asnS
1 aa cleaved
EG10094
Anselme J., Hartlein M. (1989) Asparaginyl-tRNA synthetase from Escherichia coli has significant sequence homologies with yeast aspartyl-tRNA synthetase. Gene 84:481-485
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
aspA
1 aa cleaved
EG10095
Takagi J.S., Ida N., Tokushige M., Sakamoto H., Shimura Y. (1985) Cloning and nucleotide sequence of the aspartase gene of Escherichia coli W. Nucleic Acids Res 13:2063-2074
aspC
0 aa cleaved
EG10096
Kagamiyama H., Yagi T. (1979) Aspartate transaminase from E. coli: amino acid sequences of the NH2- terminal 33 residues and chymotryptic pyridoxyl tetrapeptide. Biochem Biophys Res Commun 89:1347-1353
Kondo K., Wakabayashi S., Yagi T., Kagamiyama H. (1984) The complete amino acid sequence of aspartate aminotransferase from Escherichia coli: sequence comparison with pig isoenzymes. Biochem Biophys Res Commun 122:62-67
Kondo K., Wakabayashi S., Kagamiyama H. (1987) Structural studies on aspartate aminotransferase from Escherichia coli. Covalent structure. J Biol Chem 262:8648-8657
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Han Q., Fang J., Li J. (2001) Kynurenine aminotransferase and glutamine transaminase K of Escherichia coli: identity with aspartate aminotransferase. Biochem J 360:617-23
aspS
0 aa cleaved
EG10097
Eriani G., Dirheimer G., Gangloff J. (1990) Aspartyl-tRNA synthetase from Escherichia coli: cloning and characterisation of the gene, homologies of its translated amino acid sequence with asparaginyl- and lysyl-tRNA synthetases. Nucleic Acids Res 18:7109-7118
asr
58 aa cleaved
EG12149
Seputiene V., Motiejunas D., Suziedelis K., Tomenius H., Normark S., Melefors O., Suziedeliene E. (2003) Molecular Characterization of the Acid-Inducible asr Gene of Escherichia coli and Its Role in Acid Stress Response. J Bacteriol 185:2475-2484
atpC
1 aa cleaved
EG10100
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
atpD
1 aa cleaved
EG10101
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
atpE
0 aa cleaved
EG10102
Wachter E., Schmid R., Deckers G., Altendorf K. (1980) Amino acid replacement in dicyclohexylcarbodiimide-reactive proteins from mutant strains of Escherichia coli defective in the energy- transducing ATPase complex. FEBS Lett 113:265-270
Hoppe J., Schairer H.U., Sebald W. (1980) Identification of amino-acid substitutions in the proteolipid subunit of the ATP synthase from dicyclohexylcarbodiimide-resistant mutants of Escherichia coli. Eur J Biochem 112:17-24
atpF
0 aa cleaved
EG10103
Nielsen J., Hansen F.G., Hoppe J., Friedl P., von Meyenburg K. (1981) The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli. Mol Gen Genet 184:33-39
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
atpH
1 aa cleaved
EG10105
Nielsen J., Hansen F.G., Hoppe J., Friedl P., von Meyenburg K. (1981) The nucleotide sequence of the atp genes coding for the F0 subunits a, b, c and the F1 subunit delta of the membrane bound ATP synthase of Escherichia coli. Mol Gen Genet 184:33-39
Wilkens S., Dunn S.D., Chandler J., Dahlquist F.W., Capaldi R.A. (1997) Solution structure of the N-terminal domain of the delta subunit of the E. coli ATPsynthase. Nat Struct Biol 4:198-201
atpI
1 aa cleaved
EG10106
Schneppe B., Deckers-Hebestreit G., Altendorf K. (1990) Overproduction and purification of the uncI gene product of the ATP synthase of Escherichia coli. J Biol Chem 265:389-395
azoR
1 aa cleaved
EG12695
Fischl A.S., Kennedy E.P. (1990) Isolation and properties of acyl carrier protein phosphodiesterase of Escherichia coli. J Bacteriol 172:5445-5449
Nakanishi M., Yatome C., Ishida N., Kitade Y. (2001) Putative ACP phosphodiesterase gene (acpD) encodes an azoreductase. J Biol Chem 276:46394-9
bcp
0 aa cleaved
EG10108
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
betB
1 aa cleaved
EG10110
Lamark T., Kaasen I., Eshoo M.W., Falkenberg P., McDougall J., Strom A.R. (1991) DNA sequence and analysis of the bet genes encoding the osmoregulatory choline-glycine betaine pathway of Escherichia coli. Mol Microbiol 5:1049-1064
bfr
0 aa cleaved
EG10113
Andrews S.C., Smith J.M., Guest J.R., Harrison P.M. (1989) Amino acid sequence of the bacterioferritin (cytochrome b1) of Escherichia coli-K12. Biochem Biophys Res Commun 158:489-496
bioD
1 aa cleaved
EG10120
Alexeev D., Bury S.M., Boys C.W., Turner M.A., Sawyer L., Ramsey A.J., Baxter H.C., Baxter R.L. (1994) Sequence and crystallization of Escherichia coli dethiobiotin synthetase, the penultimate enzyme of biotin biosynthesis. J Mol Biol 235:774-776
btuB
20 aa cleaved
EG10126
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
btuF
22 aa cleaved
EG12334
Cadieux N., Bradbeer C., Reeger-Schneider E., Koster W., Mohanty A.K., Wiener M.C., Kadner R.J. (2002) Identification of the periplasmic cobalamin-binding protein BtuF of Escherichia coli. J Bacteriol 184:706-17
cadA
0 aa cleaved
EG10131
Sabo D.L., Fischer E.H. (1974) Chemical properties of Escherichia coli lysine decarboxylase including a segment of its pyridoxal 5'-phosphate binding site. Biochemistry 13:670-676
Kikuchi Y., Kojima H., Tanaka T., Takatsuka Y., Kamio Y. (1997) Characterization of a second lysine decarboxylase isolated from Escherichia coli. J Bacteriol 179:4486-4492
caiA
0 aa cleaved
EG11560
Preusser A., Wagner U., Elssner T., Kleber H.P. (1999) Crotonobetaine reductase from Escherichia coli consists of two proteins. Biochim Biophys Acta 1431:166-178
caiB
0 aa cleaved
EG11559
Eichler K., Schunck W.H., Kleber H.P., Mandrand-Berthelot M.A. (1994) Cloning, nucleotide sequence, and expression of the Escherichia coli gene encoding carnitine dehydratase. J Bacteriol 176:2970-2975
Preusser A., Wagner U., Elssner T., Kleber H.P. (1999) Crotonobetaine reductase from Escherichia coli consists of two proteins. Biochim Biophys Acta 1431:166-178
carA
0 aa cleaved
EG10134
Weyens G., Rose K., Falmagne P., Glansdorff N., Pierard A. (1985) Synthesis of Escherichia coli carbamoylphosphate synthetase initiates at a UUG codon. Eur J Biochem 150:111-115
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
carB
1 aa cleaved
EG10135
Nyunoya H., Lusty C.J. (1983) The carB gene of Escherichia coli: a duplicated gene coding for the large subunit of carbamoyl-phosphate synthetase. Proc Natl Acad Sci U S A 80:4629-4633
cbpA
0 aa cleaved
EG12193
Ueguchi C., Kakeda M., Yamada H., Mizuno T. (1994) An analogue of the DnaJ molecular chaperone in Escherichia coli. Proc Natl Acad Sci U S A 91:1054-1058
ccmE
0 aa cleaved
EG12055
Reid E., Eaves D.J., Cole J.A. (1998) The CcmE protein from Escherichia coli is a haem-binding protein. FEMS Microbiol Lett 166:369-75
cdd
0 aa cleaved
EG10137
Frick L., Yang C., Marquez V.E., Wolfenden R. (1989) Binding of pyrimidin-2-one ribonucleoside by cytidine deaminase as the transition-state analogue 3,4-dihydrouridine and the contribution of the 4-hydroxyl group to its binding affinity. Biochemistry 28:9423-30
Cloning and nucleotide sequence of the Escherichia coli cytidine deaminase (ccd) gene. Biochemistry 31:4168-4174
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5
cfa
1 aa cleaved
EG11531
Wang A.Y., Grogan D.W., Cronan J.E., Jr. (1992) Cyclopropane fatty acid synthase of Escherichia coli: deduced amino acid sequence, purification, and studies of the enzyme active site. Biochemistry 31:11020-11028
chbF
1 aa cleaved
EG10144
Thompson J., Ruvinov S.B., Freedberg D.I., Hall B.G. (1999) Cellobiose-6-phosphate hydrolase (CelF) of Escherichia coli: characterization and assignment to the unusual family 4 of glycosylhydrolases. J Bacteriol 181:7339-7345
cheA
1 aa cleaved
EG10146
Kofoid E.C., Parkinson J.S. (1991) Tandem translation starts in the cheA locus of Escherichia coli. J Bacteriol 173:2116-2119
cirA
25 aa cleaved
EG10155
Griggs D.W., Tharp B.B., Konisky J. (1987) Cloning and promoter identification of the iron-regulated cir gene of Escherichia coli. J Bacteriol 169:5343-5352
clpA
0 aa cleaved
EG10156
Katayama Y., Gottesman S., Pumphrey J., Rudikoff S., Clark W.P., Maurizi M.R. (1988) The two-component, ATP-dependent Clp protease of Escherichia coli. Purification, cloning, and mutational analysis of the ATP-binding component. J Biol Chem 263:15226-15236
clpB
0 aa cleaved
EG10157
Pontis E., Sun X.Y., Jornvall H., Krook M., Reichard P. (1991) ClpB proteins copurify with the anaerobic Escherichia coli reductase. Biochem Biophys Res Commun 180:1222-1226
clpP
14 aa cleaved
EG10158
Maurizi M.R., Clark W.P., Katayama Y., Rudikoff S., Pumphrey J., Bowers B., Gottesman S. (1990) Sequence and structure of Clp P, the proteolytic component of the ATP- dependent Clp protease of Escherichia coli. J Biol Chem 265:12536-12545
clpX
1 aa cleaved
EG10159
Wojtkowiak D., Georgopoulos C., Zylicz M. (1993) Isolation and characterization of ClpX, a new ATP-dependent specificity component of the Clp protease of Escherichia coli. J Biol Chem 268:22609-22617
coaD
0 aa cleaved
EG11190
Geerlof A., Lewendon A., Shaw W.V. (1999) Purification and characterization of phosphopantetheine adenylyltransferase from Escherichia coli. J Biol Chem 274:27105-27111
codA
1 aa cleaved
EG11326
Danielsen S., Kilstrup M., Barilla K., Jochimsen B., Neuhard J. (1992) Characterization of the Escherichia coli codBA operon encoding cytosine permease and cytosine deaminase. Mol Microbiol 6:1335-1344
copA
1 aa cleaved
EG13246
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
cpdA
0 aa cleaved
EG12187
Imamura R., Yamanaka K., Ogura T., Hiraga S., Fujita N., Ishihama A., Niki H. (1996) Identification of the cpdA gene encoding cyclic 3',5'-adenosine monophosphate phosphodiesterase in Escherichia coli. J Biol Chem 271:25423-25429
cpdB
19 aa cleaved
EG10160
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
crl
1 aa cleaved
EG11092
Olsen A., Jonsson A., Normark S. (1989) Fibronectin binding mediated by a novel class of surface organelles on Escherichia coli. Nature 338:652-655
crp
1 aa cleaved
EG10164
Aiba H., Krakow J.S. (1981) Isolation and characterization of the amino and carboxyl proximal fragments of the adenosine cyclic 3' ,5'-phosphate receptor protein of Escherichia coli. Biochemistry 20:4774-4780
crr
1 aa cleaved
EG10165
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
csdA
0 aa cleaved
EG13082
Mihara H., Kurihara T., Yoshimura T., Soda K., Esaki N. (1997) Cysteine sulfinate desulfinase, a NIFS-like protein of Escherichia coli with selenocysteine lyase and cysteine desulfurase activities. Gene cloning, purification, and characterization of a novel pyridoxal enzyme. J Biol Chem 272:22417-22424
csdB
0 aa cleaved
EG13962
Mihara H., Maeda M., Fujii T., Kurihara T., Hata Y., Esaki N. (1999) A nifS-like gene, csdB, encodes an Escherichia coli counterpart of mammalian selenocysteine lyase. Gene cloning, purification, characterization and preliminary x-ray crystallographic studies. J Biol Chem 274:14768-14772
csgA
20 aa cleaved
EG11489
Collinson S.K., Emody L., Muller K.H., Trust T.J., Kay W.W. (1991) Purification and characterization of thin, aggregative fimbriae from Salmonella enteritidis. J Bacteriol 173:4773-4781
Arnqvist A., Olsen A., Pfeifer J., Russell D.G., Normark S. (1992) The Crl protein activates cryptic genes for curli formation and fibronectin binding in Escherichia coli HB101. Mol Microbiol 6:2443-2452
csiD
0 aa cleaved
EG13523
Marschall C., Labrousse V., Kreimer M., Weichart D., Kolb A., Hengge-Aronis R. (1998) Molecular analysis of the regulation of csiD, a carbon starvation- inducible gene in Escherichia coli that is exclusively dependent on sigma s and requires activation by cAMP-CRP. J Mol Biol 276:339-53
cspA
1 aa cleaved
EG10166
Goldstein J., Pollitt N.S., Inouye M. (1990) Major cold shock protein of Escherichia coli. Proc Natl Acad Sci U S A 87:283-287.
cspC
1 aa cleaved
EG12204
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
cspD
0 aa cleaved
EG11111
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
cspE
1 aa cleaved
EG12179
Hanna M.M., Liu K. (1998) Nascent RNA in transcription complexes interacts with CspE, a small protein in E. coli implicated in chromatin condensation. J Mol Biol 282:227-239
cueO
28 aa cleaved
EG12318
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
cydA
0 aa cleaved
EG10173
Bader M., Muse W., Ballou D.P., Gassner C., Bardwell J.C. (1999) Oxidative protein folding is driven by the electron transport system. Cell 98:217-227
cynS
0 aa cleaved
EG10175
Chin C.C., Anderson P.M., Wold F. (1983) The amino acid sequence of Escherichia coli cyanase. J Biol Chem 258:276-282
cynT
0 aa cleaved
EG10176
Guilloton M.B., Korte J.J., Lamblin A.F., Fuchs J.A., Anderson P.M. (1992) Carbonic anhydrase in Escherichia coli. A product of the cyn operon. J Biol Chem 267:3731-3734
cysB
0 aa cleaved
EG10184
Tei H., Watanabe K., Murata K., Kimura A. (1990) Analysis of the Escherichia coli K-12 cysB gene and its product using the method of gene fusion. Biochem Biophys Res Commun 167:962-969
cysC
1 aa cleaved
EG10185
Leyh T.S., Vogt T.F., Suo Y. (1992) The DNA sequence of the sulfate activation locus from Escherichia coli K-12. J Biol Chem 267:10405-10410
cysD
0 aa cleaved
EG10186
Leyh T.S., Vogt T.F., Suo Y. (1992) The DNA sequence of the sulfate activation locus from Escherichia coli K-12. J Biol Chem 267:10405-10410
cysG
0 aa cleaved
EG10188
Warren M.J., Stolowich N.J., Santander P.J., Roessner C.A., Sowa B.A., Scott A.I. (1990) Enzymatic synthesis of dihydrosirohydrochlorin (precorrin-2) and of a novel pyrrocorphin by uroporphyrinogen III methylase. FEBS Lett 261:76-80
cysH
1 aa cleaved
EG10189
Krone F.A., Westphal G., Meyer H.E., Schwenn J.D. (1990) PAPS-reductase of Escherichia coli. Correlating the N-terminal amino acid sequence with the DNA of gene cys H. FEBS Lett 260:6-9
cysI
1 aa cleaved
EG10190
Ostrowski J., Wu J.Y., Rueger D.C., Miller B.E., Siegel L.M., Kredich N.M. (1989) Characterization of the cysJIH regions of Salmonella typhimurium and Escherichia coli B. DNA sequences of cysI and cysH and a model for the siroheme-Fe4S4 active center of sulfite reductase hemoprotein based on amino acid homology with spinach nitrite reductase. J Biol Chem 264:15726-15737
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
cysJ
1 aa cleaved
EG10191
Loudon J.A., Loughlin R.E. (1992) Mutagenesis and regulation of the cysJ promoter of Escherichia coli K-12. Gene 122:17-25
cysK
1 aa cleaved
EG10192
Kumagai H., Suzuki H., Shigematsu H., Tochikura T. (1989) S-carboxymethylcysteine synthase from Escherichia coli. Agric Biol Chem 53:2481-2487
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
Flint D.H., Tuminello J.F., Miller T.J. (1996) Studies on the synthesis of the Fe-S cluster of dihydroxy-acid dehydratase in Escherichia coli crude extract. Isolation of O- acetylserine sulfhydrylases A and B and beta-cystathionase based on their ability to mobilize sulfur from cysteine and to participate in Fe- S cluster synthesis. J Biol Chem 271:16053-16067
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
cysM
0 aa cleaved
EG10193
Flint D.H., Tuminello J.F., Miller T.J. (1996) Studies on the synthesis of the Fe-S cluster of dihydroxy-acid dehydratase in Escherichia coli crude extract. Isolation of O- acetylserine sulfhydrylases A and B and beta-cystathionase based on their ability to mobilize sulfur from cysteine and to participate in Fe- S cluster synthesis. J Biol Chem 271:16053-16067
cysN
0 aa cleaved
EG10194
Leyh T.S., Vogt T.F., Suo Y. (1992) The DNA sequence of the sulfate activation locus from Escherichia coli K-12. J Biol Chem 267:10405-10410
cysP
25 aa cleaved
EG10195
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
cysS
0 aa cleaved
EG10196
Eriani G., Dirheimer G., Gangloff J. (1991) Cysteinyl-tRNA synthetase: determination of the last E. coli aminoacyl- tRNA synthetase primary structure. Nucleic Acids Res 19:265-269
dacA
29 aa cleaved
EG10201
Waxman D.J., Amanuma H., Strominger J.L. (1982) Amino acid sequence homologies between Escherichia coli penicillin-binding protein 5 and class A beta-lactamases. FEBSLett 139:159-163
dacB
20 aa cleaved
EG10202
Mottl H., Terpstra P., Keck W. (1991) Penicillin-binding protein 4 of Escherichia coli shows a novel type of primary structure among penicillin-interacting proteins. FEMS Microbiol Lett 62:213-220
dacC
27 aa cleaved
EG10203
Waxman D.J., Amanuma H., Strominger J.L. (1982) Amino acid sequence homologies between Escherichia coli penicillin-binding protein 5 and class A beta-lactamases. FEBS Lett 139:159-163
dapA
0 aa cleaved
EG10205
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
dapD
0 aa cleaved
EG10207
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
dcd
0 aa cleaved
EG11418
Wang L., Weiss B. (1992) dcd (dCTP deaminase) gene of Escherichia coli: mapping, cloning, sequencing, and identification as a locus of suppressors of lethal dut (dUTPase) mutations. J Bacteriol 174:5647-5653
dcp
1 aa cleaved
EG10212
Henrich B., Becker S., Schroeder U., Plapp R. (1993) dcp gene of Escherichia coli: cloning, sequencing, transcript mapping, and characterization of the gene product. J Bacteriol 175:7290-7300
dcyD
1 aa cleaved
EG14038
Soutourina J., Blanquet S., Plateau P. (2001) Role of D-cysteine desulfhydrase in the adaptation of Escherichia coli to D-cysteine. J Biol Chem 276:40864-72
ddlB
1 aa cleaved
EG10214
al-Bar O.A., O'Connor C.D., Giles I.G., Akhtar M. (1992) D-alanine: D-alanine ligase of Escherichia coli. Expression, purification and inhibitory studies on the cloned enzyme. Biochem J 282:747-752
deaD
1 aa cleaved
EG10215
Jones P.G., Mitta M., Kim Y., Jiang W., Inouye M. (1996) Cold shock induces a major ribosomal-associated protein that unwinds double-stranded RNA in Escherichia coli. Proc Natl Acad Sci U S A 93:76-80
def
1 aa cleaved
EG11440
Meinnel T., Blanquet S. (1993) Evidence that peptide deformylase and methionyl-tRNA(fMet) formyltransferase are encoded within the same operon in Escherichia coli. J Bacteriol 175:7737-7740
degP
26 aa cleaved
EG10463
Lipinska B., Zylicz M., Georgopoulos C. (1990) The HtrA (DegP) protein, essential for Escherichia coli survival at high temperatures, is an endopeptidase. J Bacteriol 172:1791-1797
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
degQ
27 aa cleaved
EG12612
Waller P.R., Sauer R.T. (1996) Characterization of degQ and degS, Escherichia coli genes encoding homologs of the DegP protease. J Bacteriol 178:1146-1153
Bass S., Gu Q., Christen A. (1996) Multicopy suppressors of prc mutant Escherichia coli include two HtrA (DegP) protease homologs (HhoAB), DksA, and a truncated R1pA. J Bacteriol 178:1154-1161
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
deoC
1 aa cleaved
EG10221
Valentin-Hansen P., Boetius F., Hammer-Jespersen K., Svendsen I. (1982) The primary structure of Escherichia coli K12 2-deoxyribose 5-phosphate aldolase. Nucleotide sequence of the deoC gene and the amino acid sequence of the enzyme. Eur J Biochem 125:561-566
Lacourciere G.M., Levine R.L., Stadtman T.C. (2002) Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins. Proc Natl Acad Sci U S A 99:9150-3
deoD
1 aa cleaved
EG10222
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
Pitterle D.M., Rajagopalan K.V. (1993) The biosynthesis of molybdopterin in Escherichia coli. Purification and characterization of the converting factor. J Biol Chem 268:13499-13505
dfp
1 aa cleaved
EG10004
Kupke T., Uebele M., Schmid D., Jung G., Blaesse M., Steinbacher S. (2000) Molecular characterization of lantibiotic synthesizing enzyme EpiD reveals a function for bacterial Dfp proteins in coenzyme A biosynthesis. J Biol Chem 275:31838-31846
dgkA
1 aa cleaved
EG10224
Loomis C.R., Walsh J.P., Bell R.M. (1985) sn-1,2-Diacylglycerol kinase of Escherichia coli. Purification, reconstitution, and partial amino- and carboxyl-terminal analysis. J Biol Chem 260:4091-4097
dgoD
0 aa cleaved
EG20050
Babbitt P.C., Mrachko G.T., Hasson M.S., Huisman G.W., Kolter R., Ringe D., Petsko G.A., Kenyon G.L., Gerlt J.A. (1995) A functionally diverse enzyme superfamily that abstracts the alpha protons of carboxylic acids. Science 267:1159-1161
dgt
1 aa cleaved
EG10225
Seto D., Bhatnagar S.K., Bessman M.J. (1988) The purification and properties of deoxyguanosine triphosphate triphosphohydrolase from Escherichia coli. J Biol Chem 263:1494-1499
Beauchamp B.B., Richardson C.C. (1988) A unique deoxyguanosine triphosphatase is responsible for the optA1 phenotype of Escherichia coli. Proc Natl Acad Sci U S A 85:2563-2567
dipZ
19 aa cleaved
EG12178
Chung J., Chen T., Missiakas D. (2000) Transfer of electrons across the cytoplasmic membrane by DsbD, a membrane protein involved in thiol-disulphide exchange and protein folding in the bacterial periplasm. Mol Microbiol 35:1099-1109
Gordon E.H., Page M.D., Willis A.C., Ferguson S.J. (2000) Escherichia coli DipZ: anatomy of a transmembrane protein disulphide reductase in which three pairs of cysteine residues, one in each of three domains, contribute differentially to function. Mol Microbiol 35:1360-1374
dkgA
1 aa cleaved
EG13015
Habrych M., Rodriguez S., Stewart J.D. (2002) Purification and Identification of an Escherichia coli beta-Keto Ester Reductase as 2,5-Diketo-D-gluconate Reductase YqhE. Biotechnol Prog 18:257-61
dksA
0 aa cleaved
EG10230
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
dld
1 aa cleaved
EG10231
Rule G.S., Pratt E.A., Chin C.C., Wold F., Ho C. (1985) Overproduction and nucleotide sequence of the respiratory D-lactate dehydrogenase of Escherichia coli. J Bacteriol 161:1059-1068
dmsA
16 aa cleaved
EG10232
Bilous P.T., Cole S.T., Anderson W.F., Weiner J.H. (1988) Nucleotide sequence of the dmsABC operon encoding the anaerobic dimethylsulphoxide reductase of Escherichia coli. Mol Microbiol 2:785-795
dmsB
1 aa cleaved
EG10233
Bilous P.T., Cole S.T., Anderson W.F., Weiner J.H. (1988) Nucleotide sequence of the dmsABC operon encoding the anaerobic dimethylsulphoxide reductase of Escherichia coli. Mol Microbiol 2:785-795
dmsD
1 aa cleaved
EG13847
Oresnik I.J., Ladner C.L., Turner R.J. (2001) Identification of a twin-arginine leader-binding protein. Mol Microbiol 40:323-31
dnaB
1 aa cleaved
EG10236
Nakayama N., Arai N., Bond M.W., Kaziro Y., Arai K. (1984) Nucleotide sequence of dnaB and the primary structure of the dnaB protein from Escherichia coli. J Biol Chem 259:97-101.
dnaC
0 aa cleaved
EG10237
Nakayama N., Bond M.W., Miyajima A., Kobori J., Arai K. (1987) Structure of Escherichia coli dnaC. Identification of a cysteine residue possibly involved in association with dnaB protein. J Biol Chem 262:10475-10480
dnaG
1 aa cleaved
EG10239
Smiley B.L., Lupski J.R., Svec P.S., McMacken R., Godson G.N. (1982) Sequences of the Escherichia coli dnaG primase gene and regulation of its expression. Proc Natl Acad Sci U S A 79:4550-4554
dnaJ
1 aa cleaved
EG10240
Ohki M., Tamura F., Nishimura S., Uchida H. (1986) Nucleotide sequence of the Escherichia coli dnaJ gene and purification of the gene product. J Biol Chem 261:1778-1781
dnaK
1 aa cleaved
EG10241
Schmid D., Jaussi R., Christen P. (1992) Precursor of mitochondrial aspartate aminotransferase synthesized in Escherichia coli is complexed with heat-shock protein DnaK. Eur J Biochem 208:699-704
Freestone P., Grant S., Toth I., Norris V. (1995) Identification of phosphoproteins in Escherichia coli. Mol Microbiol 15:573-580
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
dnaN
0 aa cleaved
EG10242
Katayama T., Kubota T., Kurokawa K., Crooke E., Sekimizu K. (1998) The initiator function of DnaA protein is negatively regulated by the sliding clamp of the E. coli chromosomal replicase. Cell 94:61-71
dnaT
1 aa cleaved
EG10244
Masai H., Bond M.W., Arai K. (1986) Cloning of the Escherichia coli gene for primosomal protein i: the relationship to dnaT, essential for chromosomal DNA replication. Proc Natl Acad Sci U S A 83:1256-1260
dnaX
1 aa cleaved
EG10245
Maki S., Kornberg A. (1988) DNA polymerase III holoenzyme of Escherichia coli. I. Purification and distinctive functions of subunits tau and gamma, the dnaZX gene products. J Biol Chem 263:6547-6554
dppA
28 aa cleaved
EG10248
Abouhamad W.N., Manson M., Gibson M.M., Higgins C.F. (1991) Peptide transport and chemotaxis in Escherichia coli and Salmonella typhimurium: characterization of the dipeptide permease (Dpp) and the dipeptide-binding protein. Mol Microbiol 5:1035-1047
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Urbanowski M.L., Stauffer L.T., Stauffer G.V. (2000) The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37:856-868
dps
1 aa cleaved
EG11415
Foster S.J. (1993) Purification and characterization of an 'actomyosin' complex from Escherichia coli W3110. FEMS Microbiol Lett 110:295-298
Altuvia S., Almiron M., Huisman G., Kolter R., Storz G. (1994) The dps promoter is activated by OxyR during growth and by IHF and sigma S in stationary phase. Mol Microbiol 13:265-272
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ZOLL
dsbA
19 aa cleaved
EG11297
Zapun A., Bardwell J.C., Creighton T.E. (1993) The reactive and destabilizing disulfide bond of DsbA, a protein required for protein disulfide bond formation in vivo. Biochemistry 32:5083-5092
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
P77791
dsbC
20 aa cleaved
EG11070
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
dsbG
17 aa cleaved
EG13535
Andersen C.L., Matthey-Dupraz A., Missiakas D., Raina S. (1997) A new Escherichia coli gene, dsbG, encodes a periplasmic protein involved in disulphide bond formation, required for recycling DsbA/DsbB and DsbC redox proteins. Mol Microbiol 26:121-132
Bessette P.H., Cotto J.J., Gilbert H.F., Georgiou G. (1999) In vivo and in vitro function of the Escherichia coli periplasmic cysteine oxidoreductase DsbG. J Biol Chem 274:7784-7792
dsdA
0 aa cleaved
EG10249
Schiltz E., Schnackerz K.D. (1976) Sequence studies on D-serine dehydratase of Escherichia coli. Primary structure of the tryptic phosphopyridoxyl peptide and of the N-terminus. Eur J Biochem 71:109-116
Schiltz E., Schmitt W. (1981) Sequence of Escherichia coli D-serine dehydratase. Location of the pyridoxal-phosphate binding site. FEBS Lett 134:57-62
dtd
0 aa cleaved
EG11852
Soutourina J., Plateau P., Delort F., Peirotes A., Blanquet S. (1999) Functional characterization of the D-Tyr-tRNATyr deacylase from Escherichia coli. J Biol Chem 274:19109-19114
dxs
1 aa cleaved
EG13612
Sprenger G.A., Schorken U., Wiegert T., Grolle S., de Graaf A.A., Taylor S.V., Begley T.P., Bringer-Meyer S., Sahm H. (1997) Identification of a thiamin-dependent synthase in Escherichia coli required for the formation of the 1-deoxy-D-xylulose 5-phosphate precursor to isoprenoids, thiamin, and pyridoxol. Proc Natl Acad Sci U S A 94:12857-12862
eco
20 aa cleaved
EG10255
McGrath M.E., Hines W.M., Sakanari J.A., Fletterick R.J., Craik C.S. (1991) The sequence and reactive site of ecotin. A general inhibitor of pancreatic serine proteases from Escherichia coli. J Biol Chem 266:6620-6625
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ecfJ
20 aa cleaved
EG12510
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ecfK
20 aa cleaved
EG12676
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
eda
0 aa cleaved
EG10256
Vlahos C.J., Dekker E.E. (1988) The complete amino acid sequence and identification of the active-site arginine peptide of Escherichia coli 2-keto-4-hydroxyglutarate aldolase. J Biol Chem 263:11683-11691
efp
1 aa cleaved
EG12099
Aoki H., Adams S.L., Chung D.G., Yaguchi M., Chuang S.E., Ganoza M.C. (1991) Cloning, sequencing and overexpression of the gene for prokaryotic factor EF-P involved in peptide bond synthesis. Nucleic Acids Res 19:6215-6220Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
elbB
0 aa cleaved
EG11383
Ueshima R., Fujita N., Ishihama A. (1992) Identification of Escherichia coli proteins cross-reacting with antibodies against region 2.2 peptide of RNA polymerase sigma subunit. Biochem Biophys Res Commun 184:634-639
eno
1 aa cleaved
EG10258
Py B., Higgins C.F., Krisch H.M., Carpousis A.J. (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381:169-172
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Rompf A., Schmid R., Jahn D. (1998) Changes in protein synthesis as a consequence of heme depletion in Escherichia coli. Curr Microbiol 37:226-230
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
entA
0 aa cleaved
EG10259
Liu J., Duncan K., Walsh C.T. (1989) Nucleotide sequence of a cluster of Escherichia coli enterobactin biosynthesis genes: identification of entA and purification of its product 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase. J Bacteriol 171:791-798
entC
0 aa cleaved
EG10261
Liu J., Quinn N., Berchtold G.A., Walsh C.T. (1990) Overexpression, purification, and characterization of isochorismate synthase (EntC), the first enzyme involved in the biosynthesis of enterobactin from chorismate. Biochemistry 29:1417-1425
entF
0 aa cleaved
EG10264
Pettis G.S., Brickman T.J., McIntosh M.A. (1988) Transcriptional mapping and nucleotide sequence of the Escherichia coli fepA-fes enterobactin region. Identification of a unique iron-regulated bidirectional promoter. J Biol Chem 263:18857-18863
Rusnak F., Sakaitani M., Drueckhammer D., Reichert J., Walsh C.T. (1991) Biosynthesis of the Escherichia coli siderophore enterobactin: sequence of the entF gene, expression and purification of EntF, and analysis of covalent phosphopantetheine. Biochemistry 30:2916-2927
epd
1 aa cleaved
EG10368
Zhao G., Pease A.J., Bharani N., Winkler M.E. (1995) Biochemical characterization of gapB-encoded erythrose 4-phosphate dehydrogenase of Escherichia coli K-12 and its possible role in pyridoxal 5'-phosphate biosynthesis. J Bacteriol 177:2804-2812
erfK
21 aa cleaved
EG12682
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
etk
0 aa cleaved
EG11826
Ilan O., Bloch Y., Frankel G., Ullrich H., Geider K., Rosenshine I. (1999) Protein tyrosine kinases in bacterial pathogens are associated with virulence and production of exopolysaccharide. EMBO J 18:3241-3248
eutB
0 aa cleaved
EG50006
Faust L.R., Connor J.A., Roof D.M., Hoch J.A., Babior B.M. (1990) Cloning, sequencing, and expression of the genes encoding the adenosylcobalamin-dependent ethanolamine ammonia-lyase of Salmonella typhimurium. J Biol Chem 265:12462-12466
eutC
0 aa cleaved
EG50007
Faust L.R., Connor J.A., Roof D.M., Hoch J.A., Babior B.M. (1990) Cloning, sequencing, and expression of the genes encoding the adenosylcobalamin-dependent ethanolamine ammonia-lyase of Salmonella typhimurium. J Biol Chem 265:12462-12466
fabA
0 aa cleaved
EG10273
Cronan J.E., Jr., Li W.B., Coleman R., Narasimhan M., de Mendoza D., Schwab J.M. (1988) Derived amino acid sequence and identification of active site residues of Escherichia coli beta-hydroxydecanoyl thioester dehydrase. J Biol Chem 263:4641-4646
fabB
0 aa cleaved
EG10274
Kauppinen S., Siggaard-Andersen M., von Wettstein-Knowles P. (1988) beta-Ketoacyl-ACP synthase I of Escherichia coli: nucleotide sequence of the fabB gene and identification of the cerulenin binding residue. Carlsberg Res Commun 53:357-370
fabD
1 aa cleaved
EG11317
Magnuson K., Oh W., Larson T.J., Cronan J.E., Jr. (1992) Cloning and nucleotide sequence of the fabD gene encoding malonyl coenzyme A-acyl carrier protein transacylase of Escherichia coli. FEBS Lett 299:262-266
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fabF
1 aa cleaved
EG12606
Siggaard-Andersen M., Wissenbach M., Chuck J.A., Svendsen I., Olsen J.G., von Wettstein-Knowles P. (1994) The fabJ-encoded beta-ketoacyl-[acyl carrier protein] synthase IV from Escherichia coli is sensitive to cerulenin and specific for short-chain substrates. Proc Natl Acad Sci U S A 91:11027-11031
fabH
0 aa cleaved
EG10277
Tsay J.T., Oh W., Larson T.J., Jackowski S., Rock C.O. (1992) Isolation and characterization of the beta-ketoacyl-acyl carrier protein synthase III gene (fabH) from Escherichia coli K-12. J Biol Chem 267:6807-6814
fabI
1 aa cleaved
EG11528
Bergler H., Hogenauer G., Turnowsky F. (1992) Sequences of the envM gene and of two mutated alleles in Escherichia coli. J Gen Microbiol 138:2093-2100
Bergler H., Wallner P., Ebeling A., Leitinger B., Fuchsbichler S., Aschauer H., Kollenz G., Hogenauer G., Turnowsky F. (1994) Protein EnvM is the NADH-dependent enoyl-ACP reductase (FabI) of Escherichia coli. J Biol Chem 269:5493-5496
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fabZ
0 aa cleaved
EG11284
Foster S.J. (1993) Purification and characterization of an 'actomyosin' complex from Escherichia coli W3110. FEMS Microbiol Lett 110:295-298
fadA
0 aa cleaved
EG10278
Yang S.Y., Yang X.Y., Healy-Louie G., Schulz H., Elzinga M. (1990) Nucleotide sequence of the fadA gene. Primary structure of 3-ketoacyl- coenzyme A thiolase from Escherichia coli and the structural organization of the fadAB operon. J Biol Chem 265:10424-10429
fadB
0 aa cleaved
EG10279
Yang S.Y., Yang X.Y., Healy-Louie G., Schulz H., Elzinga M. (1990) Nucleotide sequence of the fadA gene. Primary structure of 3-ketoacyl- coenzyme A thiolase from Escherichia coli and the structural organization of the fadAB operon. J Biol Chem 265:10424-10429
fadD
0 aa cleaved
EG11530
Black P.N., DiRusso C.C., Metzger A.K., Heimert T.L. (1992) Cloning, sequencing, and expression of the fadD gene of Escherichia coli encoding acyl coenzyme A synthetase. J Biol Chem 267:25513-25520
fadH
1 aa cleaved
EG12723
He X.Y., Yang S.Y., Schulz H. (1997) Cloning and expression of the fadH gene and characterization of the gene product 2,4-dienoyl coenzyme A reductase from Escherichia coli. Eur J Biochem 248:516-520
fadL
25 aa cleaved
EG10280
Black P.N. (1991) Primary sequence of the Escherichia coli fadL gene encoding an outer membrane protein required for long-chain fatty acid transport. J Bacteriol 173:435-442
Ohba A., Mizushima T., Katayama T., Sekimizu K. (1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
fadR
1 aa cleaved
EG10281
DiRusso C.C., Heimert T.L., Metzger A.K. (1992) Characterization of FadR, a global transcriptional regulator of fatty acid metabolism in Escherichia coli. Interaction with the fadB promoter is prevented by long chain fatty acyl coenzyme A. J Biol Chem 267:8685-8691
fbaA
1 aa cleaved
EG10282
Alefounder P.R., Baldwin S.A., Perham R.N., Short N.J. (1989) Cloning, sequence analysis and over-expression of the gene for the class II fructose 1,6-bisphosphate aldolase of Escherichia coli. Biochem J 257:529-534
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Wu J., Woodward R.W. (2003) Escherichia coli YrbI is 3-Deoxy-D-manno-octulosonate 8-phosphate phosphatase. J Biol Chem In press
fbaB
1 aa cleaved
EG14062
Thomson G.J., Howlett G.J., Ashcroft A.E., Berry A. (1998) The dhnA gene of Escherichia coli encodes a class I fructose bisphosphate aldolase. Biochem J 331:437-445
fdhF
0 aa cleaved
EG10285
Axley M.J., Grahame D.A., Stadtman T.C. (1990) Escherichia coli formate-hydrogen lyase. Purification and properties of the selenium-dependent formate dehydrogenase component. J Biol Chem 265:18213-18218
fdx
1 aa cleaved
EG11328
Knoell H.E., Knappe J. (1974) Escherichia coli ferredoxin, an iron-sulfur protein of the adrenodoxin type. Eur J Biochem 50:245-252
Ta D.T., Vickery L.E. (1992) Cloning, sequencing, and overexpression of a [2Fe-2S] ferredoxin gene from Escherichia coli. J Biol Chem 267:11120-11125
feaB
0 aa cleaved
EG13179
Hanlon S.P., Hill T.K., Flavell M.A., Stringfellow J.M., Cooper R.A. (1997) 2-phenylethylamine catabolism by Escherichia coli K-12: gene organization and expression. Microbiology 143:513-518
Ferrandez A., Prieto M.A., Garcia J.L., Diaz E. (1997) Molecular characterization of PadA, a phenylacetaldehyde dehydrogenase from Escherichia coli. FEBS Lett 406:23-27
feaR
0 aa cleaved
EG13422
Yamashita M., Azakami H., Yokoro N., Roh J.H., Suzuki H., Kumagai H., Murooka Y. (1996) maoB, a gene that encodes a positive regulator of the monoamine oxidase gene (maoA) in Escherichia coli. J Bacteriol 178:2941-2947
fecA
33 aa cleaved
EG10286
Pressler U., Staudenmaier H., Zimmermann L., Braun V. (1988) Genetics of the iron dicitrate transport system of Escherichia coli. J Bacteriol 170:2716-2724
fepA
22 aa cleaved
EG10293
Wachi M., Takada A., Nagai K. (1999) Overproduction of the outer-membrane proteins FepA and FhuE responsible for iron transport in Escherichia coli hfq::cat mutant. Biochem Biophys Res Commun 264:525-529
fepB
26 aa cleaved
EG10294
Sprencel C., Cao Z., Qi Z., Scott D.C., Montague M.A., Ivanoff N., Xu J., Raymond K.M., Newton S.M., Klebba P.E. (2000) Binding of ferric enterobactin by the Escherichia coli periplasmic protein FepB. J Bacteriol 182:5359-5364
fes
0 aa cleaved
EG10299
Pettis G.S., Brickman T.J., McIntosh M.A. (1988) Transcriptional mapping and nucleotide sequence of the Escherichia coli fepA-fes enterobactin region. Identification of a unique iron-regulated bidirectional promoter. J Biol Chem 263:18857-18863
fhuA
33 aa cleaved
EG10302
Coulton J.W., Mason P., Cameron D.R., Carmel G., Jean R., Rode H.N. (1986) Protein fusions of beta-galactosidase to the ferrichrome-iron receptor of Escherichia coli K-12. J Bacteriol 165:181-192
fhuE
36 aa cleaved
EG10306
Sauer M., Hantke K., Braun V. (1987) Ferric-coprogen receptor FhuE of Escherichia coli: processing and sequence common to all TonB-dependent outer membrane receptor proteins. J Bacteriol 169:2044-2049
Wachi M., Takada A., Nagai K. (1999) Overproduction of the outer-membrane proteins FepA and FhuE responsible for iron transport in Escherichia coli hfq::cat mutant. Biochem Biophys Res Commun 264:525-529
fimA
23 aa cleaved
EG10308
Klemm P., Orskov I., Orskov F. (1982) F7 and type 1-like fimbriae from three Escherichia coli strains isolated from urinary tract infections: protein chemical and immunological aspects. Infect Immun 36:462-468
Orndorff P.E., Falkow S. (1985) Nucleotide sequence of pilA, the gene encoding the structural component of type 1 pili in Escherichia coli. J Bacteriol 162:454-457
fimC
36 aa cleaved
EG10310
Klemm P. (1992) FimC, a chaperone-like periplasmic protein of Escherichia coli involved in biogenesis of type 1 fimbriae. Res Microbiol 143:831-838
fimH
21 aa cleaved
EG10315
Hanson M.S., Hempel J., Brinton C.C., Jr. (1988) Purification of the Escherichia coli type 1 pilin and minor pilus proteins and partial characterization of the adhesin protein. J Bacteriol 170:3350-3358
fis
0 aa cleaved
EG10317
Johnson R.C., Ball C.A., Pfeffer D., Simon M.I. (1988) Isolation of the gene encoding the Hin recombinational enhancer binding protein. Proc Natl Acad Sci U S A 85:3484-3488
Koch C., Vandekerckhove J., Kahmann R. (1988) Escherichia coli host factor for site-specific DNA inversion: cloning and characterization of the fis gene. Proc Natl Acad Sci U S A 85:4237-4241
Green J., Anjum M.F., Guest J.R. (1996) The ndh-binding protein (Nbp) regulates the ndh gene of Escherichia coli in response to growth phase and is identical to Fis. Mol Microbiol 20:1043-55
fklB
1 aa cleaved
EG12503
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fkpA
25 aa cleaved
EG12900
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
fldA
1 aa cleaved
EG10318
Osborne C., Chen L.M., Matthews R.G. (1991) Isolation, cloning, mapping, and nucleotide sequencing of the gene encoding flavodoxin in Escherichia coli. J Bacteriol 173:1729-1737
Jenkins C.M., Waterman M.R. (1994) Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities. J Biol Chem 269:27401-27408
Birch O.M., Fuhrmann M., Shaw N.M. (1995) Biotin synthase from Escherichia coli, an investigation of the low molecular weight and protein components required for activity in vitro. J Biol Chem 270:19158-19165
fliC
1 aa cleaved
EG10321
Ohba A., Mizushima T., Katayama T., Sekimizu K.(1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
fliY
29 aa cleaved
EG12680
Butler J.D., Levin S.W., Facchiano A., Miele L., Mukherjee A.B. (1993) Amino acid composition and N-terminal sequence of purified cystine binding protein of Escherichia coli. Life Sci 52:1209-1215
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781/Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
flu
52 aa cleaved
EG12686
Caffrey P., Owen P. (1989) Purification and N-terminal sequence of the alpha subunit of antigen 43, a unique protein complex associated with the outer membrane of Escherichia coli. J Bacteriol 171:3634-3640
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fmt
1 aa cleaved
EG11268
Guillon J.M., Mechulam Y., Schmitter J.M., Blanquet S., Fayat G. (1992) Disruption of the gene for Met-tRNA(fMet) formyltransferase severely impairs growth of Escherichia coli. J Bacteriol 174:4294-4301
fnr
0 aa cleaved
EG10325
Trageser M., Spiro S., Duchene A., Kojro E., Fahrenholz F., Guest J.R., Unden G. (1990) Isolation of intact FNR protein (Mr 30,000) of Escherichia coli. Mol Microbiol 4:21-27
folA
0 aa cleaved
EG10326
Bennett C.D. (1974) Letter: Primary structure of E. coli dihydrofolate reductase. Nature 252:511-512
Bennett C.D., Rodkey J.A., Sondey J.M., Hirschmann R. (1978) Dihydrofolate reductase: the amino acid sequence of the enzyme from a methotrexate-resistant mutant of Escherichia coli. Biochemistry 17:1328-1337
folB
0 aa cleaved
EG11673
Green J., Anjum M.F., Guest J.R. (1996) The ndh-binding protein (Nbp) regulates the ndh gene of Escherichia coli in response to growth phase and is identical to Fis. Mol Microbiol 20:1043-55
folC
0 aa cleaved
EG10327
Bognar A.L., Osborne C., Shane B. (1987) Primary structure of the Escherichia coli gene and its folylpolyglutamate synthetase-dihydrofolate synthetase product and regulation of expression by an upstream gene. J Biol Chem 262:12337-12343
folD
1 aa cleaved
EG10328
D'Ari L., Rabinowitz J.C. (1991) Purification, characterization, cloning, and amino acid sequence of the bifunctional enzyme 5,10-methylenetetrahydrofolate dehydrogenase/5,10- methenyltetrahydrofolate cyclohydrolase from Escherichia coli. J Biol Chem 266:23953-23958
folE
1 aa cleaved
EG11375
Katzenmeier G., Schmid C., Kellermann J., Lottspeich F., Bacher A. (1991) Biosynthesis of tetrahydrofolate. Sequence of GTP cyclohydrolase I from Escherichia coli. Biol Chem Hoppe Seyler 372:991-997
Schoedon G., Redweik U., Frank G., Cotton R.G., Blau N. (1992) Allosteric characteristics of GTP cyclohydrolase I from Escherichia coli. Eur J Biochem 210:561-568
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
folK
1 aa cleaved
EG11374
Talarico T.L., Dev I.K., Dallas W.S., Ferone R., Ray P.H. (1991) Purification and partial characterization of 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase and 7,8-dihydropteroate synthase from Escherichia coli MC4100. J Bacteriol 173:7029-7032
Talarico T.L., Ray P.H., Dev I.K., Merrill B.M., Dallas W.S. (1992) Cloning, sequence analysis, and overexpression of Escherichia coli folK, the gene coding for 7,8-dihydro-6-hydroxymethylpterin- pyrophosphokinase. J Bacteriol 174:5971-5977
folP
0 aa cleaved
EG50011
Talarico T.L., Dev I.K., Dallas W.S., Ferone R., Ray P.H. (1991) Purification and partial characterization of 7,8-dihydro-6- hydroxymethylpterin-pyrophosphokinase and 7,8-dihydropteroate synthase from Escherichia coli MC4100. J Bacteriol 173:7029-7032
folX
1 aa cleaved
EG14263
Haussmann C., Rohdich F., Lottspeich F., Eberhardt S., Scheuring J., Mackamul S., Bacher A. (1997) Dihydroneopterin triphosphate epimerase of Escherichia coli: purification, genetic cloning, and expression. J Bacteriol 179:949-951
Ahn C., Byun J., Yim J. (1997) Purification, cloning, and functional expression of dihydroneopterin triphosphate 2'-epimerase from Escherichia coli. J Biol Chem 272:15323-15328
fpr
1
0 aa cleaved
EG11518
Bianchi V., Reichard P., Eliasson R., Pontis E., Krook M., Jornvall H., Haggard-Ljungquist E. (1993) Escherichia coli ferredoxin NADP+ reductase: activation of E. coli anaerobic ribonucleotide reduction, cloning of the gene (fpr), and overexpression of the protein. J Bacteriol 175:1590-1595
Jenkins C.M., Waterman M.R. (1994) Flavodoxin and NADPH-flavodoxin reductase from Escherichia coli support bovine cytochrome P450c17 hydroxylase activities. J Biol Chem 269:27401-27408
Birch O.M., Fuhrmann M., Shaw N.M. (1995) Biotin synthase from Escherichia coli, an investigation of the low molecular weight and protein components required for activity in vitro. J Biol Chem 270:19158-19165
frdB
1 aa cleaved
EG10331
Cole S.T., Grundstrom T., Jaurin B., Robinson J.J., Weiner J.H. (1982) Location and nucleotide sequence of frdB, the gene coding for the iron- sulphur protein subunit of the fumarate reductase of Escherichia coli. Eur J Biochem 126:211-216
fre
1 aa cleaved
EG10334
Spyrou G., Haggard-Ljungquist E., Krook M., Jornvall H., Nilsson E., Reichard P. (1991) Characterization of the flavin reductase gene (fre) of Escherichia coli and construction of a plasmid for overproduction of the enzyme. J Bacteriol 173:3673-3679
frr
0 aa cleaved
EG10335
Ichikawa S., Kaji A. (1989) Molecular cloning and expression of ribosome releasing factor. J Biol Chem 264:20054-20059
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fsaA
1 aa cleaved
EG13471
Schurmann M., Sprenger G.A. (2001) Fructose-6-phosphate aldolase is a novel class I aldolase from Escherichia coli and is related to a novel group of bacterial transaldolases. J Biol Chem 276:11055-61
ftnA
0 aa cleaved
EG10921
Hudson A.J., Andrews S.C., Hawkins C., Williams J.M., Izuhara M., Meldrum F.C., Mann S., Harrison P.M., Guest J.R. (1993) Overproduction, purification and characterization of the Escherichia coli ferritin. Eur J Biochem 218:985-995
ftsZ
0 aa cleaved
EG10347
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fucI
0 aa cleaved
EG10349
Gunn F.J., Tate C.G., Henderson P.J. (1994) Identification of a novel sugar-H+ symport protein, FucP, for transport of L-fucose into Escherichia coli. Mol Microbiol 12:799-809
fucK
0 aa cleaved
EG10350
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
fucP
1 aa cleaved
EG10352
Gunn F.J., Tate C.G., Henderson P.J. (1994) Identification of a novel sugar-H+ symport protein, FucP, for transport of L-fucose into Escherichia coli. Mol Microbiol 12:799-809
fumA
1 aa cleaved
EG10356
Ueda Y., Yumoto N., Tokushige M., Fukui K., Ohya-Nishiguchi H. (1991) Purification and characterization of two types of fumarase from Escherichia coli. J Biochem (Tokyo) 109:728-733
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
fumC
0 aa cleaved
EG10358
Ueda Y., Yumoto N., Tokushige M., Fukui K., Ohya-Nishiguchi H. (1991) Purification and characterization of two types of fumarase from Escherichia coli. J Biochem (Tokyo) 109:728-733
Weaver T.M., Levitt D.G., Banaszak L.J. (1993) Purification and crystallization of fumarase C from Escherichia coli. J Mol Biol 231:141-144
fusA
1 aa cleaved
EG10360
Post L.E., Nomura M. (1980) DNA sequences from the str operon of Escherichia coli. J Biol Chem 255:4660-4666
Ovchinnikov Yu A., Alakhov Yu B., Bundulis Yu P., Bundule M.A., Dovgas N.V., Kozlov V.P., Motuz L.P., Vinokurov L.M. (1982) The primary structure of elongation factor G from Escherichia coli. A complete amino acid sequence. FEBS Lett 139:130-135
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gabT
0 aa cleaved
EG10361
Schulz A., Taggeselle P., Tripier D., Bartsch K. (1990) Stereospecific production of the herbicide phosphinothricin (glufosinate) by transamination: isolation and characterization of a phosphinothricin-specific transaminase from Escherichia coli. Appl Environ Microbiol 56:1-6
gadA
0 aa cleaved
EG50009
Maras B., Sweeney G., Barra D., Bossa F., John R.A. (1992) The amino acid sequence of glutamate decarboxylase from Escherichia coli. Evolutionary relationship between mammalian and bacterial enzymes. Eur J Biochem 204:93-98
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
Yoshida T., Yamashino T., Ueguchi C., Mizuno T. (1993) Expression of the Escherichia coli dimorphic glutamic acid decarboxylases is regulated by the nucleoid protein H-NS. Biosci Biotechnol Biochem 57:1568-1569
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
gadB
0 aa cleaved
EG11490
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
galE
0 aa cleaved
EG10362
Schlesinger D.H., Niall H.D., Wilson D. (1974) Localization of translation initiation in the message for E. coli UDP- galactose 4-epimerase: the amino terminal sequence. Biochem Biophys Res Commun 61:282-289
Ohba A., Mizushima T., Katayama T., Sekimizu K.(1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
galK
1 aa cleaved
EG10363
Schlesinger D.H., Schell M.A., Wilson D.B. (1977) The NH2-terminal sequences of galactokinase from Escherichia coli and Saccharomyces cerevisiae. FEBS Lett 83:45-47
galS
0 aa cleaved
EG10365
Geanacopoulos M., Adhya S. (1997) Functional characterization of roles of GalR and GalS as regulators of the gal regulon. J Bacteriol 179:228-234
galT
1 aa cleaved
EG10366
Raychowdhury R., Schlesinger D.H., Wilson D.B. (1979) E. coli galactose-1-phosphate uridyl transferase: N-terminal and C- terminal sequences. Mol Cell Biochem 23:167-175
galU
1 aa cleaved
EG11319
Weissborn A.C., Liu Q., Rumley M.K., Kennedy E.P. (1994) UTP: alpha-D-glucose-1-phosphate uridylyltransferase of Escherichia coli: isolation and DNA sequence of the galU gene and purification of the enzyme. J Bacteriol 176:2611-2618
Hossain S.A., Tanizawa K., Kazuta Y., Fukui T. (1994) Overproduction and characterization of recombinant UDP-glucose pyrophosphorylase from Escherichia coli K-12. J Biochem (Tokyo) 115:965-972
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gapA
1 aa cleaved
EG10367
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Lacourciere G.M., Levine R.L., Stadtman T.C. (2002) Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins. Proc Natl Acad Sci U S A 99:9150-3
garL
0 aa cleaved
EG10016
Hubbard B.K., Koch M., Palmer D.R., Babbitt P.C., Gerlt J.A. (1998) Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli. Biochemistry 37:14369-14375
gatB
0 aa cleaved
EG12415
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
gatY
0 aa cleaved
EG12419
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
gcd
0 aa cleaved
EG10369
Yamada M., Sumi K., Matsushita K., Adachi O., Yamada Y. (1993) Topological analysis of quinoprotein glucose dehydrogenase in Escherichia coli and its ubiquinone-binding site. JBiolChem 268:12812-12817
gcl
1 aa cleaved
EG11583
Chang Y.Y., Wang A.Y., Cronan J.E., Jr. (1993) Molecular cloning, DNA sequencing, and biochemical analyses of Escherichia coli glyoxylate carboligase. An enzyme of the acetohydroxy acid synthase-pyruvate oxidase family. J Biol Chem 268:3911-3919
gcvH
1 aa cleaved
EG10371
Okamura-Ikeda K., Ohmura Y., Fujiwara K., Motokawa Y. (1993) Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem 216:539-548
gcvP
1 aa cleaved
EG11810
Okamura-Ikeda K., Ohmura Y., Fujiwara K., Motokawa Y. (1993) Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem 216:539-548
gcvR
1 aa cleaved
EG11149
Ghrist A.C., Stauffer G.V. (1998) Promoter characterization and constitutive expression of the Escherichia coli gcvR gene. J Bacteriol 180:1803-180
gcvT
1 aa cleaved
EG11442
Okamura-Ikeda K., Ohmura Y., Fujiwara K., Motokawa Y. (1993) Cloning and nucleotide sequence of the gcv operon encoding the Escherichia coli glycine-cleavage system. Eur J Biochem 216:539-548
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gdhA
0 aa cleaved
EG10372
McPherson M.J., Wootton J.C. (1983) Complete nucleotide sequence of the Escherichia coli gdhA gene. Nucleic Acids Res 11:5257-5266
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ggt
25 aa cleaved
EG10374
Suzuki H., Kumagai H., Echigo T., Tochikura T. (1989) DNA sequence of the Escherichia coli K-12 gamma-glutamyltranspeptidase gene, ggt. J Bacteriol 171:5169-5172
ghrA
0 aa cleaved
EG13869
Nunez M.F., Pellicer M.T., Badia J., Aguilar J., Baldoma L. (2001) Biochemical characterization of the 2-ketoacid reductases encoded by ycdW and yiaE genes in Escherichia coli. Biochem J 354:707-15
ghrB
0 aa cleaved
EG12272
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wu J., Woodward R.W. (2003) Escherichia coli YrbI is 3-Deoxy-D-manno-octulosonate 8-phosphate phosphatase. J Biol Chem In press
glcB
1 aa cleaved
EG20080
Molina I., Pellicer M.T., Badia J., Aguilar J., Baldoma L. (1994) Molecular characterization of Escherichia coli malate synthase G. Differentiation with the malate synthase A isoenzyme. Eur J Biochem 224:541-548
glf
0 aa cleaved
EG11981
Nassau P.M., Martin S.L., Brown R.E., Weston A., Monsey D., McNeil M.R., Duncan K. (1996) Galactofuranose biosynthesis in Escherichia coli K-12: identification and cloning of UDP-galactopyranose mutase. J Bacteriol 178:1047-1052
glgA
0 aa cleaved
EG10377
Kaidow A., Kataoka T., Wachi M., Takada A., Yamasaki M., Nagai K. (1992) The 55-kilodalton protein in an oriC complex fraction is glycogen synthase. J Bacteriol 174:5454-5456
glgC
1 aa cleaved
EG10379
Parsons T.F., Preiss J. (1978) Biosynthesis of bacterial glycogen. Isolation and characterization of the pyridoxal-P allosteric activator site and the ADP-glucose-protected pyridoxal-P binding site of Escherichia coli B ADP-glucose synthase. J Biol Chem 253:7638-7645
glmM
1 aa cleaved
EG11553
Mengin-Lecreulx D., van Heijenoort J. (1996) Characterization of the essential gene glmM encoding phosphoglucosamine mutase in Escherichia coli. J Biol Chem 271:32-39
glmS
1 aa cleaved
EG10382
Badet B., Vermoote P., Haumont P.Y., Lederer F., LeGoffic F. (1987) Glucosamine synthetase from Escherichia coli: purification, properties, and glutamine-utilizing site location. Biochemistry 26:1940-1948
glnA
1 aa cleaved
EG10383
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
glnB
0 aa cleaved
EG10384
Vasudevan S.G., Gedye C., Dixon N.E., Cheah E., Carr P.D., Suffolk P.M., Jeffrey P.D., Ollis D.L. (1994) Escherichia coli PII protein: purification, crystallization and oligomeric structure. FEBS Lett 337:255-258
glnH
22 aa cleaved
EG10386
Nohno T., Saito T., Hong J.S. (1986) Cloning and complete nucleotide sequence of the Escherichia coli glutamine permease operon (glnHPQ). Mol Gen Genet 205:260-269
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
glnL
1 aa cleaved
EG10387
Ninfa A.J., Bennett R.L. (1991) Identification of the site of autophosphorylation of the bacterial protein kinase/phosphatase NRII. J Biol Chem 266:6888-6893
glnS
1 aa cleaved
EG10390
Hoben P., Royal N., Cheung A., Yamao F., Biemann K., Soll D. (1982) Escherichia coli glutaminyl-tRNA synthetase. II. Characterization of the glnS gene product. J Biol Chem 257:11644-11650
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gloA
0 aa cleaved
EG13421
Clugston S.L., Barnard J.F., Kinach R., Miedema D., Ruman R., Daub E., Honek J.F. (1998) Overproduction and characterization of a dimeric non-zinc glyoxalase I from Escherichia coli: evidence for optimal activation by nickel ions. Biochemistry 37:8754-8763
glpA
0 aa cleaved
EG10391
Cole S.T., Eiglmeier K., Ahmed S., Honore N., Elmes L., Anderson W.F., Weiner J.H. (1988) Nucleotide sequence and gene-polypeptide relationships of the glpABC operon encoding the anaerobic sn-glycerol-3-phosphate dehydrogenase of Escherichia coli K-12. J Bacteriol 170:2448-2456
glpB
0 aa cleaved
EG10392
Cole S.T., Eiglmeier K., Ahmed S., Honore N., Elmes L., Anderson W.F., Weiner J.H. (1988) Nucleotide sequence and gene-polypeptide relationships of the glpABC operon encoding the anaerobic sn-glycerol-3-phosphate dehydrogenase of Escherichia coli K-12. J Bacteriol 170:2448-2456
glpC
0 aa cleaved
EG10393
Cole S.T., Eiglmeier K., Ahmed S., Honore N., Elmes L., Anderson W.F., Weiner J.H. (1988) Nucleotide sequence and gene-polypeptide relationships of the glpABC operon encoding the anaerobic sn-glycerol-3-phosphate dehydrogenase of Escherichia coli K-12. J Bacteriol 170:2448-2456
glpD
0 aa cleaved
EG10394
Milla M.E., Raetz C.R. (1996) Association of lipid A disaccharide synthase with aerobic glycerol-3-phosphate dehydrogenase in extracts of Escherichia coli. Biochim Biophys Acta 1304:245-53
glpG
0 aa cleaved
EG10397
Zeng G., Ye S., Larson T.J. (1996) Repressor for the sn-glycerol 3-phosphate regulon of Escherichia coli K- 12: primary structure and identification of the DNA-binding domain. J Bacteriol 178:7080-7089
glpK
1 aa cleaved
EG10398
Pettigrew D.W., Ma D.P., Conrad C.A., Johnson J.R. (1988) Escherichia coli glycerol kinase. Cloning and sequencing of the glpK gene and the primary structure of the enzyme. J Biol Chem 263:135-139
glpQ
25 aa cleaved
EG10399
Tommassen J., Eiglmeier K., Cole S.T., Overduin P., Larson T.J., Boos W. (1991) Characterization of two genes, glpQ and ugpQ, encoding glycerophosphoryl diester phosphodiesterases of Escherichia coli. Mol Gen Genet 226:321-327
glpR
0 aa cleaved
EG10400
Zeng G., Ye S., Larson T.J. (1996) Repressor for the sn-glycerol 3-phosphate regulon of Escherichia coli K- 12: primary structure and identification of the DNA-binding domain. J Bacteriol 178:7080-7089
gltA
1 aa cleaved
EG10402
Bhayana V., Duckworth H.W. (1984) Amino acid sequence of Escherichia coli citrate synthase. Biochemistry 23:2900-2905
Rompf A., Schmid R., Jahn D. (1998) Changes in protein synthesis as a consequence of heme depletion in Escherichia coli. Curr Microbiol 37:226-230
gltB
42 aa cleaved
EG10403
Oliver G., Gosset G., Sanchez-Pescador R., Lozoya E., Ku L.M., Flores N., Becerril B., Valle F., Bolivar F. (1987) Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12. Gene 60:1-11
gltD
1 aa cleaved
EG10404
Oliver G., Gosset G., Sanchez-Pescador R., Lozoya E., Ku L.M., Flores N., Becerril B., Valle F., Bolivar F. (1987) Determination of the nucleotide sequence for the glutamate synthase structural genes of Escherichia coli K-12. Gene 60:1-11
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
gltF
25 aa cleaved
EG11514
Grassl G., Bufe B., Muller B., Rosel M., Kleiner D. (1999) Characterization of the gltF gene product of Escherichia coli. FEMS Microbiol Lett 179:79-84
gltI
22 aa cleaved
EG12700
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Urbanowski M.L., Stauffer L.T., Stauffer G.V. (2000) The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37:856-868
glyA
0 aa cleaved
EG10408
Vasudevan S.G., Armarego W.L., Shaw D.C., Lilley P.E., Dixon N.E., Poole R.K. (1991) Isolation and nucleotide sequence of the hmp gene that encodes a haemoglobin-like protein in Escherichia coli K-12. Mol Gen Genet 226:49-58
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Ohba A., Mizushima T., Katayama T., Sekimizu K.(1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
glyS
1 aa cleaved
EG10410
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gntK
1 aa cleaved
EG12629
Tong S., Porco A., Isturiz T., Conway T. (1996) Cloning and molecular genetic characterization of the Escherichia coli gntR, gntK, and gntU genes of GntI, the main system for gluconate metabolism. J Bacteriol 178:3260-3269
gpmA
1 aa cleaved
EG11699
Nystrom T., Larsson C., Gustafsson L. (1996) Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis. EMBO J 15:3219-3228
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
greA
0 aa cleaved
EG10415
Borukhov S., Polyakov A., Nikiforov V., Goldfarb A. (1992) GreA protein: a transcription elongation factor from Escherichia coli. Proc Natl Acad Sci U S A 89:8899-8902
greB
0 aa cleaved
EG11578
Borukhov S., Sagitov V., Goldfarb A. (1993) Transcript cleavage factors from E. coli. Cell 72:459-466
groL
1 aa cleaved
EG10599
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
groS
0 aa cleaved
EG10600
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
grxA
0 aa cleaved
EG10417
Hoog J.O., Jornvall H., Holmgren A., Carlquist M., Persson M. (1983) The primary structure of Escherichia coli glutaredoxin. Distant homology with thioredoxins in a superfamily of small proteins with a redox-active cystine disulfide/cysteine dithiol. Eur J Biochem 136:223-232
grxB
0 aa cleaved
EG12688
Aslund F., Ehn B., Miranda-Vizuete A., Pueyo C., Holmgren A. (1994) Two additional glutaredoxins exist in Escherichia coli: glutaredoxin 3 is a hydrogen donor for ribonucleotide reductase in a thioredoxin/glutaredoxin 1 double mutant. Proc Natl Acad Sci U S A 91:9813-9817
grxC
1 aa cleaved
EG12294
Aslund F., Ehn B., Miranda-Vizuete A., Pueyo C., Holmgren A. (1994) Two additional glutaredoxins exist in Escherichia coli: glutaredoxin 3 is a hydrogen donor for ribonucleotide reductase in a thioredoxin/glutaredoxin 1 double mutant. Proc Natl Acad Sci U S A 91:9813-9817
gshA
0 aa cleaved
EG10418
Watanabe K., Yamano Y., Murata K., Kimura A. (1986) The nucleotide sequence of the gene for gamma-glutamylcysteine synthetase of Escherichia coli. Nucleic Acids Res 14:4393-4400
gshB
0 aa cleaved
EG10419
Gushima H., Yasuda S., Soeda E., Yokota M., Kondo M., Kimura A. (1984) Complete nucleotide sequence of the E. coli glutathione synthetase gsh-II. Nucleic Acids Res 12:9299-9307
gsk
0 aa cleaved
EG11102
Harlow K.W., Nygaard P., Hove-Jensen B. (1995) Cloning and characterization of the gsk gene encoding guanosine kinase of Escherichia coli. J Bacteriol 177:2236-2240
gst
0 aa cleaved
EG12613
Arca P., Garcia P., Hardisson C., Suarez J.E. (1990) Purification and study of a bacterial glutathione S-transferase. FEBS Lett 263:77-79
Nishida M., Kong K.H., Inoue H., Takahashi K. (1994) Molecular cloning and site-directed mutagenesis of glutathione S- transferase from Escherichia coli. The conserved tyrosyl residue near the N terminus is not essential for catalysis. J Biol Chem 269:32536-32541
guaA
0 aa cleaved
EG10420
Tiedeman A.A., Smith J.M., Zalkin H. (1985) Nucleotide sequence of the guaA gene encoding GMP synthetase of Escherichia coli K12. J Biol Chem 260:8676-8679
guaB
0 aa cleaved
EG10421
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
guaC
0 aa cleaved
EG10422
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
gudD
1 aa cleaved
EG13167
Hubbard B.K., Koch M., Palmer D.R., Babbitt P.C., Gerlt J.A. (1998) Evolution of enzymatic activities in the enolase superfamily: characterization of the (D)-glucarate/galactarate catabolic pathway in Escherichia coli. Biochemistry 37:14369-14375
gyrA
1 aa cleaved
EG10423
Menzel R., Gellert M. (1987) Fusions of the Escherichia coli and gyrB control regions to the galactokinase gene are inducible by coumermycin treatment. J Bacteriol 169:1272-1278
gyrB
1 aa cleaved
EG10424
Adachi T., Mizuuchi M., Robinson E.A., Appella E., O'Dea M.H., Gellert M., Mizuuchi K. (1987) DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy. Nucleic Acids Res 15:771-784
hchA
1 aa cleaved
EG11755
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
hdeA
21 aa cleaved
EG11398
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
hdeB
29 aa cleaved
EG11399
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
hdhA
0 aa cleaved
EG10425
Yoshimoto T., Higashi H., Kanatani A., Lin X.S., Nagai H., Oyama H., Kurazono K., Tsuru D. (1991) Cloning and sequencing of the 7 alpha-hydroxysteroid dehydrogenase gene from Escherichia coli HB101 and characterization of the expressed enzyme. J Bacteriol 173:2173-2179
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
helD
0 aa cleaved
EG10426
Wood E.R., Matson S.W. (1989) The molecular cloning of the gene encoding the Escherichia coli 75-kDa helicase and the determination of its nucleotide sequence and gentic map position. J Biol Chem 264:8297-8303
hemB
1 aa cleaved
EG10428
Spencer P., Jordan P.M. (1993) Purification and characterization of 5-aminolaevulinic acid dehydratase from Escherichia coli and a study of the reactive thiols at the metal-binding domain. Biochem J 290:279-287
hemC
0 aa cleaved
EG10429
Jordan P.M., Thomas S.D., Warren M.J. (1988) Purification, crystallization and properties of porphobilinogen deaminase from a recombinant strain of Escherichia coli K12. Biochem J 254:427-435
hemG
0 aa cleaved
EG11485
Matsudaira P. (1987) Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membranes. J Biol Chem 262:10035-10038
Sasarman A., Letowski J., Czaika G., Ramirez V., Nead M.A., Jacobs J.M., Morais R. (1993) Nucleotide sequence of the hemG gene involved in the protoporphyrinogen oxidase activity of Escherichia coli K12. Can J Microbiol 39:1155-1161
hemH
0 aa cleaved
EG10431
Miyamoto K., Kanaya S., Morikawa K., Inokuchi H. (1994) Overproduction, purification, and characterization of ferrochelatase from Escherichia coli. J Biochem (Tokyo) 115:545-551
hemX
0 aa cleaved
EG10433
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
hepA
1 aa cleaved
EG11083
Sukhodolets M.V., Jin D.J. (1998) RapA, a novel RNA polymerase-associated protein, is a bacterial homolog of SWI2/SNF2. J Biol Chem 273:7018-7023Muzzin O., Campbell E.A., Xia L., Severinova E., Darst S.A., Severinov K. (1998) Disruption of Escherichia coli hepA, an RNA polymerase-associated protein, causes UV sensitivity. J Biol Chem 273:15157-15161
hfq
1 aa cleaved
EG10438
Carmichael G.G., Weber K., Niveleau A., Wahba A.J. (1975) The host factor required for RNA phage Qbeta RNA replication in vitro. Intracellular location, quantitation, and purification by polyadenylate-cellulose chromatography. J Biol Chem 250:3607-3612
Kajitani M., Ishihama A. (1991) Identification and sequence determination of the host factor gene for bacteriophage Q beta. Nucleic Acids Res 19:1063-1066
Green J., Anjum M.F., Guest J.R. (1996) The ndh-binding protein (Nbp) regulates the ndh gene of Escherichia coli in response to growth phase and is identical to Fis. Mol Microbiol 20:1043-55
Takada A., Wachi M., Kaidow A., Takamura M., Nagai K. (1997) DNA binding properties of the hfq gene product of Escherichia coli. Biochem Biophys Res Commun 236:576-579
hipB
0 aa cleaved
EG10442
Black D.S., Irwin B., Moyed H.S. (1994) Autoregulation of hip, an operon that affects lethality due to inhibition of peptidoglycan or DNA synthesis. J Bacteriol 176:4081-4091
hisB
1 aa cleaved
EG10445
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
hisD
1 aa cleaved
EG10447
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
hisJ
22 aa cleaved
EG12124
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
hisS
1 aa cleaved
EG10453
Freedman R., Gibson B., Donovan D., Biemann K., Eisenbeis S., Parker J., Schimmel P. (1985) Primary structure of histidine-tRNA synthetase and characterization of hisS transcripts. J Biol Chem 260:10063-10068
hlyE
1 aa cleaved
EG13243
Ludwig A., Bauer S., Benz R., Bergmann B., Goebel W. (1999) Analysis of the SlyA-controlled expression, subcellular localization and pore-forming activity of a 34 kDa haemolysin (ClyA) from Escherichia coli K-12. Mol Microbiol 31:557-567
hmp
0 aa cleaved
EG10456
Vasudevan S.G., Armarego W.L., Shaw D.C., Lilley P.E., Dixon N.E., Poole R.K. (1991) Isolation and nucleotide sequence of the hmp gene that encodes a haemoglobin-like protein in Escherichia coli K-12. Mol Gen Genet 226:49-58
Andrews S.C., Shipley D., Keen J.N., Findlay J.B., Harrison P.M., Guest J.R. (1992) The haemoglobin-like protein (HMP) of Escherichia coli has ferrisiderophore reductase activity and its C-terminal domain shares homology with ferredoxin NADP+ reductases. FEBS Lett 302:247-252
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Gardner P.R., Gardner A.M., Martin L.A., Salzman A.L. (1998) Nitric oxide dioxygenase: an enzymic function for flavohemoglobin. Proc Natl Acad Sci U S A 95:10378-10383
hns
1 aa cleaved
EG10457
Laine B., Sautiere P., Spassky A., Rimsky S. (1984) A DNA-binding protein from E. coli isolation, characterization and its relationship with proteins H1 and B1. Biochem Biophys Res Commun 119:1147-1153
Yamada H., Muramatsu S., Mizuno T. (1990) An Escherichia coli protein that preferentially binds to sharply curved DNA. J Biochem (Tokyo) 108:420-425
Kajitani M., Ishihama A. (1991) Identification and sequence determination of the host factor gene for bacteriophage Q beta. Nucleic Acids Res 19:1063-1066
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Nieto J.M., Madrid C., Prenafeta A., Miquelay E., Balsalobre C., Carrascal M., Juarez A. (2000) Expression of the hemolysin operon in Escherichia coli is modulated by a nucleoid-protein complex that includes the proteins Hha and H-NS. Mol Gen Genet 263:349-358
holA
0 aa cleaved
EG11412
Carter J.R., Franden M.A., Aebersold R., McHenry C.S. (1992) Molecular cloning, sequencing, and overexpression of the structural gene encoding the delta subunit of Escherichia coli DNA polymerase III holoenzyme. J Bacteriol 174:7013-7025
Dong Z., Onrust R., Skangalis M., O'Donnell M. (1993) DNA polymerase III accessory proteins. I. holA and holB encoding delta and delta'. J Biol Chem 268:11758-11765
holB
0 aa cleaved
EG11500
Dong Z., Onrust R., Skangalis M., O'Donnell M. (1993) DNA polymerase III accessory proteins. I. holA and holB encoding delta and delta'. J Biol Chem 268:11758-11765
holC
0 aa cleaved
EG11413
Xiao H., Crombie R., Dong Z., Onrust R., O'Donnell M. (1993) DNA polymerase III accessory proteins. III. holC and holD encoding chi and psi. J Biol Chem 268:11773-11778
Carter J.R., Franden M.A., Lippincott J.A., McHenry C.S. (1993) Identification, molecular cloning and characterization of the gene encoding the chi subunit of DNA polymerase III holoenzyme of Escherichia coli. Mol Gen Genet 241:399-408
holD
1 aa cleaved
EG11414
Xiao H., Crombie R., Dong Z., Onrust R., O'Donnell M. (1993) DNA polymerase III accessory proteins. III. holC and holD encoding chi and psi. J Biol Chem 268:11773-11778
holE
0 aa cleaved
EG11505
Studwell-Vaughan P.S., O'Donnell M. (1993) DNA polymerase III accessory proteins. V. Theta encoded by holE. J Biol Chem 268:11785-11791
Carter J.R., Franden M.A., Aebersold R., Kim D.R., McHenry C.S. (1993) Isolation, sequencing and overexpression of the gene encoding the theta subunit of DNA polymerase III holoenzyme. Nucleic Acids Res 21:3281-3286
hslR
0 aa cleaved
EG12929
Korber P., Zander T., Herschlag D., Bardwell J.C. (1999) A new heat shock protein that binds nucleic acids. J Biol Chem 274:249-256
hslV
1 aa cleaved
EG11676
Rohrwild M., Coux O., Huang H.C., Moerschell R.P., Yoo S.J., Seol J.H., Chung C.H., Goldberg A.L. (1996) HslV-HslU: A novel ATP-dependent protease complex in Escherichia coli related to the eukaryotic proteasome. Proc Natl Acad Sci U S A 93:5808-5813
hspQ
0 aa cleaved
EG13724
Shimuta TR, Nakano K, Yamaguchi Y, Ozaki S, Fujimitsu K, Matsunaga C, Noguchi K, Emoto A, Katayama T (2004) Novel heat shock protein HspQ stimulates the degradation of mutant DnaA protein in Escherichia coli. Genes Cells 9:1151-66
htpG
0 aa cleaved
EG10461
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
htrE
29 aa cleaved
EG11972
Raina S., unpublished in P33129
hupA
0 aa cleaved
EG10466
Laine B., Sautiere P., Biserte G., Cohen-Solal M., Gros F., Rouviere-Yaniv J. (1978) The amino- and carboxy-terminal amino acid sequences of protein HU from Escherichia coli. FEBS Lett 89:116-120
Laine B., Kmiecik D., Sautiere P., Biserte G., Cohen-Solal M. (1980) Complete amino-acid sequences of DNA-binding proteins HU-1 and HU-2 from Escherichia coli. Eur J Biochem 103:447-461
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
hupB
0 aa cleaved
EG10467
Laine B., Sautiere P., Biserte G., Cohen-Solal M., Gros F., Rouviere-Yaniv J. (1978) The amino- and carboxy-terminal amino acid sequences of protein HU from Escherichia coli. FEBS Lett 89:116-120
Mende L., Timm B., Subramanian R. (1978) Primary structures of two homologous ribosome-associated DNA-binding proteins of Escherichia coli. FEBS Lett 96:395-398
Laine B., Kmiecik D., Sautiere P., Biserte G., Cohen-Solal M. (1980) Complete amino-acid sequences of DNA-binding proteins HU-1 and HU-2 from Escherichia coli. Eur J Biochem 103:447-461
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
hyaA
35 aa cleaved
EG10468
Menon N.K., Robbins J., Peck H.D., Jr., Chatelus C.Y., Choi E.S., Przybyla A.E. (1990) Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames. J Bacteriol 172:1969-1977
hyaB
0 aa cleaved
EG10469
Menon N.K., Robbins J., Peck H.D., Jr., Chatelus C.Y., Choi E.S., Przybyla A.E. (1990) Cloning and sequencing of a putative Escherichia coli [NiFe] hydrogenase-1 operon containing six open reading frames. J Bacteriol 172:1969-1977
hybC
1 aa cleaved
EG11801
Sargent F., Ballantine S.P., Rugman P.A., Palmer T., Boxer D.H. (1998) Reassignment of the gene encoding the Escherichia coli hydrogenase 2 small subunit--identification of a soluble precursor of the small subunit in a hypB mutant. Eur J Biochem 255:746-754
hybO
37 aa cleaved
EG13006
Sargent F., Ballantine S.P., Rugman P.A., Palmer T., Boxer D.H. (1998) Reassignment of the gene encoding the Escherichia coli hydrogenase 2 small subunit--identification of a soluble precursor of the small subunit in a hypB mutant. Eur J Biochem 255:746-754
hycE
0 aa cleaved
EG10478
Rossmann R., Sauter M., Lottspeich F., Bock A. (1994) Maturation of the large subunit (HYCE) of Escherichia coli hydrogenase 3 requires nickel incorporation followed by C-terminal processing at Arg537. Eur J Biochem 220:377-384
hycI
1 aa cleaved
EG13396
Rossmann R., Maier T., Lottspeich F., Bock A. (1995) Characterisation of a protease from Escherichia coli involved in hydrogenase maturation. Eur J Biochem 227:545-550
hypB
0 aa cleaved
EG10484
Maier T., Jacobi A., Sauter M., Bock A. (1993) The product of the hypB gene, which is required for nickel incorporation into hydrogenases, is a novel guanine nucleotide-binding protein. J Bacteriol 175:630-635
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
hypC
1 aa cleaved
EG10485
Magalon A., Bock A. (2000) Analysis of the HypC-HycE complex, a key intermediate in the assembly of the metal center of the Escherichia coli hydrogenase 3. J Biol Chem 275:21114-21120
iadA
0 aa cleaved
EG12567
Gary J.D., Clarke S. (1995) Purification and characterization of an isoaspartyl dipeptidase from Escherichia coli. J Biol Chem 270:4076-4087
ibpA
0 aa cleaved
EG11534
Allen S.P., Polazzi J.O., Gierse J.K., Easton A.M. (1992) Two novel heat shock genes encoding proteins produced in response to heterologous protein expression in Escherichia coli. J Bacteriol 174:6938-6947
ibpB
0 aa cleaved
EG11535
Allen S.P., Polazzi J.O., Gierse J.K., Easton A.M. (1992) Two novel heat shock genes encoding proteins produced in response to heterologous protein expression in Escherichia coli. J Bacteriol 174:6938-6947
icd
0 aa cleaved
EG10489
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
iclR
1 aa cleaved
EG10491
Donald L.J., Chernushevich I.V., Zhou J., Verentchikov A., Poppe-Schriemer N., Hosfield D.J., Westmore J.B., Ens W., Duckworth H.W., Standing K.G. (1996) Preparation and properties of pure, full-length IclR protein of Escherichia coli. Use of time-of-flight mass spectrometry to investigate the problems encountered. Protein Sci 5:1613-1624
ihfA
1 aa cleaved
EG10440
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ihfB
0 aa cleaved
EG10441
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ileS
1 aa cleaved
EG10492
Webster T., Tsai H., Kula M., Mackie G.A., Schimmel P. (1984) Specific sequence homology and three-dimensional structure of an aminoacyl transfer RNA synthetase. Science 226:1315-1317
Yanagisawa T., Lee J.T., Wu H.C., Kawakami M. (1994) Relationship of protein structure of isoleucyl-tRNA synthetase with pseudomonic acid resistance of Escherichia coli. A proposed mode of action of pseudomonic acid as an inhibitor of isoleucyl-tRNA synthetase. J Biol Chem 269:24304-24309
ilvC
1 aa cleaved
EG10495
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ilvD
1 aa cleaved
EG10496
Flint D.H., Emptage M.H., Finnegan M.G., Fu W., Johnson M.K. (1993) The role and properties of the iron-sulfur cluster in Escherichia coli dihydroxy-acid dehydratase. JBiolChem 268:14732-14742
ilvE
1 aa cleaved
EG10497
Lee-Peng F.C., Hermodson M.A., Kohlhaw G.B. (1979) Transaminase B from Escherichia coli: quaternary structure, amino-terminal sequence, substrate specificity, and absence of a separate valine-alpha-ketoglutarate activity. J Bacteriol 139:339-345
Adams C.W., Lawther R.P., Hatfield G.W. (1979) The ilvEDA operon of Escherichia coli K12 encodes only one valine-alpha-ketoglutarate transaminase activity. Biochem Biophys Res Commun 89:650-8
Inoue K., Kuramitsu S., Aki K., Watanabe Y., Takagi T., Nishigai M., Ikai A., Kagamiyama H. (1988) Branched-chain amino acid aminotransferase of Escherichia coli: overproduction and properties. J Biochem (Tokyo) 104:777-784
ilvI
0 aa cleaved
EG10500
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
imp
24 aa cleaved
EG11569
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
infA
1 aa cleaved
EG10504
Pon C.L., Wittmann-Liebold B., Gualerzi C. (1979) Structure--function relationships in Escherichia coli initiation factors. II. Elucidation of the primary structure of initiation factor IF-1. FEBS Lett 101:157-160
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
infB
0 aa cleaved
EG10505
Plumbridge J.A., Deville F., Sacerdot C., Petersen H.U., Cenatiempo Y., Cozzone A., Grunberg-Manago M., Hershey J.W. (1985) Two translational initiation sites in the infB gene are used to express initiation factor IF2 alpha and IF2 beta in Escherichia coli. EMBO J 4:223-229
infC
0 aa cleaved
EG10506
Brauer D., Wittmann-Liebold B. (1977) The primary structure of the initiation factor IF-3 from Escherichia coli. FEBS Lett 79:269-275
iscS
0 aa cleaved
EG12677
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ispA
0 aa cleaved
EG10508
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ispD
1 aa cleaved
EG13110
Rohdich F., Wungsintaweekul J., Fellermeier M., Sagner S., Herz S., Kis K., Eisenreich W., Bacher A., Zenk M.H. (1999) Cytidine 5'-triphosphate-dependent biosynthesis of isoprenoids: YgbP protein of Escherichia coli catalyzes the formation of 4-diphosphocytidyl-2-C-methylerythritol. Proc Natl Acad Sci U S A 96:11758-11763
ispU
1 aa cleaved
EG13329
Apfel C.M., Takacs B., Fountoulakis M., Stieger M., Keck W. (1999) Use of genomics to identify bacterial undecaprenyl pyrophosphate synthetase: cloning, expression, and characterization of the essential uppS gene. J Bacteriol 181:483-492
ivy
28 aa cleaved
EG13547
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Monchois V., Abergel C., Sturgis J., Jeudy S., Claverie J.M. (2001) Escherichia coli ykfE ORFan gene encodes a potent inhibitor of C-type lysozyme. J Biol Chem 276:18437-41
katE
0 aa cleaved
EG10509
von Ossowski I., Mulvey M.R., Leco P.A., Borys A., Loewen P.C. (1991) Nucleotide sequence of Escherichia coli katE, which encodes catalase HPII. J Bacteriol 173:514-520
kbl
0 aa cleaved
EG10512
Mukherjee J.J., Dekker E.E. (1987) Purification, properties, and N-terminal amino acid sequence of homogeneous Escherichia coli 2-amino-3-ketobutyrate CoA ligase, a pyridoxal phosphate-dependent enzyme. JBiolChem 262:14441-14447
kdpE
0 aa cleaved
EG10517
Nakashima K., Sugiura A., Momoi H., Mizuno T. (1992) Phosphotransfer signal transduction between two regulatory factors involved in the osmoregulated kdp operon in Escherichia coli. Mol Microbiol 6:1777-1784
kdsA
0 aa cleaved
EG10518
Dotson G.D., Dua R.K., Clemens J.C., Wooten E.W., Woodard R.W. (1995) Overproduction and one-step purification of Escherichia coli 3-deoxy-D-manno-octulosonic acid 8-phosphate synthase and oxygen transfer studies during catalysis using isotopic-shifted heteronuclear NMR. J Biol Chem 270:13698-13705
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
kdsB
1 aa cleaved
EG10519
Goldman R.C., Bolling T.J., Kohlbrenner W.E., Kim Y., Fox J.L. (1986) Primary structure of CTP:CMP-3-deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) from Escherichia coli. J Biol Chem 261:15831-15835
kdsC
1 aa cleaved
EG12804
Wu J., Woodward R.W. (2003) Escherichia coli YrbI is 3-Deoxy-D-manno-octulosonate 8-phosphate phosphatase. J Biol Chem In press
kduI
0 aa cleaved
EG13096
Dunten P., Jaffe H., Aksamit R.R. (1998) Crystallization of 5-keto-4-deoxyuronate isomerase from Escherichia coli. Acta Crystallogr D Biol Crystallogr 54:678-680
lacA
0 aa cleaved
EG10524
Fowler A.V., Hediger M.A., Musso R.E., Zabin I. (1985) The amino acid sequence of thiogalactoside transacetylase of Escherichia coli. Biochimie 67:101-108
lacI
0 aa cleaved
EG10525
Platt T., Weber K., Ganem D., Miller J.H. (1972) Translational restarts: AUG reinitiation of a lac repressor fragment. Proc Natl Acad Sci U S A 69:897-901
Adler K., Beyreuther K., Fanning E., Geisler N., Gronenborn B., Klemm A., Muller-Hill B., Pfahl M., Schmitz A. (1972) How lac repressor binds to DNA. Nature 237:322-327
Platt T., Files J.G., Weber K. (1973) Lac repressor. Specific proteolytic destruction of the NH 2 -terminal region and loss of the deoxyribonucleic acid-binding activity. J Biol Chem 248:110-121
Beyreuther K., Adler K., Fanning E., Murray C., Klemm A., Geisler N. (1975) Amino-acid sequence of lac repressor from Escherichia coli. Isolation, sequence analysis and sequence assembly of tryptic peptides and cyanogen-bromide fragments. Eur J Biochem 59:491-509
lacZ
1 aa cleaved
EG10527
Fowler A.V., Zabin I. (1978) Amino acid sequence of beta-galactosidase. VIII. Sequence of the NH2- terminal segment, CNBr peptides 1 to 9, residues 1 to 377. J Biol Chem 253:5505-5509
Fowler A.V., Zabin I. (1978) Amino acid sequence of beta-galactosidase. XI. Peptide ordering procedures and the complete sequence. J Biol Chem 253:5521-5525
lamB
25 aa cleaved
EG10528
Edermann R., Hindennach I., Henning U. (1978) Major proteins of the Escherichia coli outer cell envelope membrane. Preliminary characterization of the phage lambda receptor protein. FEBS Lett 88:71-74
ldcC
0 aa cleaved
EG13219
Kikuchi Y., Kojima H., Tanaka T., Takatsuka Y., Kamio Y. (1997) Characterization of a second lysine decarboxylase isolated from Escherichia coli. J Bacteriol 179:4486-4492
Yamamoto Y., Miwa Y., Miyoshi K., Furuyama J., Ohmori H. (1997) The Escherichia coli ldcC gene encodes another lysine decarboxylase, probably a constitutive enzyme. Genes Genet Syst 72:167-172
leuA
1 aa cleaved
EG11226
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
leuB
1 aa cleaved
EG11577
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
leuC
1 aa cleaved
EG11576
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
leuD
1 aa cleaved
EG11575
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
ligA
0 aa cleaved
EG10534
Ishino Y., Shinagawa H., Makino K., Tsunasawa S., Sakiyama F., Nakata A. (1986) Nucleotide sequence of the lig gene and primary structure of DNA ligase of Escherichia coli. Mol Gen Genet 204:1-7
ligT
1 aa cleaved
EG12330
Arn E.A., Abelson J.N. (1996) The 2'-5' RNA ligase of Escherichia coli. Purification, cloning, and genomic disruption. J Biol Chem 271:31145-31153
lipA
1 aa cleaved
EG11306
Ollagnier-de Choudens S., Fontecave M. (1999) The lipoate synthase from Escherichia coli is an iron-sulfur protein. FEBS Lett 453:25-8
Miller J.R., Busby R.W., Jordan S.W., Cheek J., Henshaw T.F., Ashley G.W., Broderick J.B., Cronan J.E., Jr., Marletta M.A. (2000) Escherichia coli LipA is a lipoyl synthase: in vitro biosynthesis of lipoylated pyruvate dehydrogenase complex from octanoyl-acyl carrier protein. Biochemistry 39:15166-78
livJ
23 aa cleaved
EG10539
Ovchinnikov Y.A., Aldanova N.A., Grinkevich V.A., Arzamazova N.M., Moroz I.N. (1977) The primary structure of a Leu, Ile and Val (LIV)-binding protein from Escherichia coli. FEBS Lett 78:313-316
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Urbanowski M.L., Stauffer L.T., Stauffer G.V. (2000) The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37:856-868
livK
23 aa cleaved
EG10540
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
lolA
22 aa cleaved
EG12684
Matsuyama S., Tajima T., Tokuda H. (1995) A novel periplasmic carrier protein involved in the sorting and transport of Escherichia coli lipoproteins destined for the outer membrane. EMBO J 14:3365-3372
Matsuyama S., Tajima T., Tokuda H. (1995) A novel periplasmic carrier protein involved in the sorting and transport of Escherichia coli lipoproteins destined for the outer membrane. EMBO J 14:3365-3372
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
lolC
0 aa cleaved
EG13439
Yakushi T., Masuda K., Narita Si , Matsuyama Si , Tokuda H. (2000) A new ABC transporter mediating the detachment of lipid-modified proteins from membranes. Nat Cell Biol 2:212-218
lolD
0 aa cleaved
EG13440
Yakushi T., Masuda K., Narita Si , Matsuyama Si , Tokuda H. (2000) A new ABC transporter mediating the detachment of lipid-modified proteins from membranes. Nat Cell Biol 2:212-218
lolE
1 aa cleaved
EG13441
Yakushi T., Masuda K., Narita Si , Matsuyama Si , Tokuda H. (2000) A new ABC transporter mediating the detachment of lipid-modified proteins from membranes. Nat Cell Biol 2:212-218
lon
0 aa cleaved
EG10542
Gayda R.C., Stephens P.E., Hewick R., Schoemaker J.M., Dreyer W.J., Markovitz A. (1985) Regulatory region of the heat shock-inducible capR (lon) gene: DNA and protein sequences. J Bacteriol 162:271-275
Thomas C.D., Modha J., Razzaq T.M., Cullis P.M., Rivett A.J. (1993) Controlled high-level expression of the lon gene of Escherichia coli allows overproduction of Lon protease. Gene 136:237-242
lpd
1 aa cleaved
EG10543
Stephens P.E., Lewis H.M., Darlison M.G., Guest J.R. (1983) Nucleotide sequence of the lipoamide dehydrogenase gene of Escherichia coli K12. Eur J Biochem 135:519-527
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
lplA
1 aa cleaved
EG11796
Morris T.W., Reed K.E., Cronan J.E., Jr. (1994) Identification of the gene encoding lipoate-protein ligase A of Escherichia coli. Molecular cloning and characterization of the lplA gene and gene product. J Biol Chem 269:16091-16100
lpp
20 aa cleaved
EG10544
Inouye S., Wang S., Sekizawa J., Halegoua S., Inouye M. (1977) Amino acid sequence for the peptide extension on the prolipoprotein of the Escherichia coli outer membrane. Proc Natl Acad Sci U S A 74:1004-1008
Braun V., Bosch V. (1972) Sequence of the murein-lipoprotein and the attachment site of the lipid. Eur J Biochem 28:51-69
Hantke K., Braun V. (1973) Covalent binding of lipid to protein. Diglyceride and amide-linked fatty acid at the N-terminal end of the murein-lipoprotein of the Escherichia coli outer membrane. Eur J Biochem 34:284-296
lpxA
0 aa cleaved
EG10545
Anderson M.S., Bull H.G., Galloway S.M., Kelly T.M., Mohan S., Radika K., Raetz C.R. (1993) UDP-N-acetylglucosamine acyltransferase of Escherichia coli. The first step of endotoxin biosynthesis is thermodynamically unfavorable. J Biol Chem 268:19858-65
lpxB
0 aa cleaved
EG10546
Radika K., Raetz C.R. (1988) Purification and properties of lipid A disaccharide synthase of Escherichia coli. J Biol Chem 263:14859-67
lpxC
0 aa cleaved
EG10265
Young K., Silver L.L., Bramhill D., Cameron P., Eveland S.S., Raetz C.R., Hyland S.A., Anderson M.S. (1995) The envA permeability/cell division gene of Escherichia coli encodes the second enzyme of lipid A biosynthesis. UDP-3-O-(R-3- hydroxymyristoyl)-N-acetylglucosamine deacetylase. J Biol Chem 270:30384-30391
lpxD
1 aa cleaved
EG10316
Dicker I.B., Seetharam S. (1991) Cloning and nucleotide sequence of the firA gene and the firA200(Ts) allele from Escherichia coli. J Bacteriol 173:334-344
lrp
1 aa cleaved
EG10547
Platko J.V., Willins D.A., Calvo J.M. (1990) The ilvIH operon of Escherichia coli is positively regulated. J Bacteriol 172:4563-4570
ltaE
0 aa cleaved
EG13690
Liu J.Q., Dairi T., Itoh N., Kataoka M., Shimizu S., Yamada H. (1998) Gene cloning, biochemical characterization and physiological role of a thermostable low-specificity L-threonine aldolase from Escherichia coli. Eur J Biochem 255:220-226
luxS
1 aa cleaved
EG12712
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
lysP
1 aa cleaved
EG11337
Ellis J., Carlin A., Steffes C., Wu J., Liu J., Rosen B.P. (1995) Topological analysis of the lysine-specific permease of Escherichia coli. Microbiology 141:1927-1935
lysS
1 aa cleaved
EG10552
Leveque F., Plateau P., Dessen P., Blanquet S. (1990) Homology of lysS and lysU, the two Escherichia coli genes encoding distinct lysyl-tRNA synthetase species. Nucleic Acids Res 18:305-312
lysU
1 aa cleaved
EG10553
Leveque F., Plateau P., Dessen P., Blanquet S. (1990) Homology of lysS and lysU, the two Escherichia coli genes encoding distinct lysyl-tRNA synthetase species. Nucleic Acids Res 18:305-312
maa
1 aa cleaved
EG14239
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
malE
26 aa cleaved
EG10554
Duplay P., Bedouelle H., Fowler A., Zabin I., Saurin W., Hofnung M. (1984) Sequences of the malE gene and of its product, the maltose-binding protein of Escherichia coli K12. J Biol Chem 259:10606-10613
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
malP
1 aa cleaved
EG10560
Schiltz E., Palm D., Klein H.W. (1980) N-terminal sequences of Escherichia coli and potato phosphorylase. FEBS Lett 109:59-62
malS
17 aa cleaved
EG11316
Schneider E., Freundlieb S., Tapio S., Boos W. (1992) Molecular characterization of the MalT-dependent periplasmic alpha-amylase of Escherichia coli encoded by malS. J Biol Chem 267:5148-5154
manX
1 aa cleaved
EG10567
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
map
1 aa cleaved
EG10570
Ben-Bassat A., Bauer K., Chang S.Y., Myambo K., Boosman A., Chang S. (1987) Processing of the initiation methionine from proteins: properties of the Escherichia coli methionine aminopeptidase and its gene structure. J Bacteriol 169:751-757
mcrB
0 aa cleaved
EG10574
Zheng L., Wang X., Braymer H.D. (1992) Purification and N-terminal amino acid sequences of two polypeptides encoded by the mcrB gene from Escherichia coli K-12. Gene 112:97-100
mcrC
0 aa cleaved
EG10575
Zheng L., Braymer H.D. (1991) Overproduction and purification of McrC protein from Escherichia coli K-12. J Bacteriol 173:3918-3920
mdh
0 aa cleaved
EG10576
Fernley R.T., Lentz S.R., Bradshaw R.A. (1981) Malate dehydrogenase: isolation from E. coli and comparison with the eukaryotic mitochondrial and cytoplasmic forms. Biosci Rep 1:497-507
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
Nystrom T., Larsson C., Gustafsson L. (1996) Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis. EMBO J 15:3219-3228
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
mdoG
22 aa cleaved
EG11885
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
melA
0 aa cleaved
EG10577
Nagao Y., Nakada T., Imoto M., Shimamoto T., Sakai S., Tsuda M., Tsuchiya T. (1988) Purification and analysis of the structure of alpha-galactosidase from Escherichia coli. Biochem Biophys Res Commun 151:236-241
Mandrich L., Caputo E., Martin B.M., Rossi M., Manco G. (2002) The Aes protein and the monomeric alpha-galactosidase from Escherichia coli form a non-covalent complex. Implications for the regulation of carbohydrate metabolism. J Biol Chem
mepA
19 aa cleaved
EG10580
Keck W., van Leeuwen A.M., Huber M., Goodell E.W. (1990) Cloning and characterization of mepA, the structural gene of the penicillin-insensitive murein endopeptidase from Escherichia coli. Mol Microbiol 4:209-219
metB
1 aa cleaved
EG10582
Tran S.V., Schaeffer E., Bertrand O., Mariuzza R., Ferrara P. (1983) Appendix. Purification, molecular weight, and NH2-terminal sequence of cystathionine gamma-synthase of Escherichia coli. J Biol Chem 258:14872-14873
metC
1 aa cleaved
EG10583
Belfaiza J., Parsot C., Martel A., de la Tour C.B., Margarita D., Cohen G.N., Saint-Girons I. (1986) Evolution in biosynthetic pathways: two enzymes catalyzing consecutive steps in methionine biosynthesis originate from a common ancestor and possess a similar regulatory region. Proc Natl Acad Sci USA 83:867-871
Flint D.H., Tuminello J.F., Miller T.J. (1996) Studies on the synthesis of the Fe-S cluster of dihydroxy-acid dehydratase in Escherichia coli crude extract. Isolation of O-acetylserine sulfhydrylases A and B and beta-cystathionase based on their ability to mobilize sulfur from cysteine and to participate in Fe-S cluster synthesis. J Biol Chem 271:16053-16067
metE
1 aa cleaved
EG10584
Gonzalez J.C., Banerjee R.V., Huang S., Sumner J.S., Matthews R.G. (1992) Comparison of cobalamin-independent and cobalamin-dependent methionine synthases from Escherichia coli: two solutions to the same chemical problem. Biochemistry 31:6045-6056
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
metG
1 aa cleaved
EG10586
Barker D.G., Ebel J.P., Jakes R., Bruton C.J. (1982) Methionyl-tRNA synthetase from Escherichia coli. Primary structure of the active crystallised tryptic fragment. Eur J Biochem 127:449-457
metH
1 aa cleaved
EG10587
Banerjee R.V., Johnston N.L., Sobeski J.K., Datta P., Matthews R.G. (1989) Cloning and sequence analysis of the Escherichia coli metH gene encoding cobalamin-dependent methionine synthase and isolation of a tryptic fragment containing the cobalamin-binding domain. J Biol Chem 264:13888-13895
metJ
1 aa cleaved
EG10588
Saint-Girons I., Duchange N., Cohen G.N., Zakin M.M. (1984) Structure and autoregulation of the metJ regulatory gene in Escherichia coli. J Biol Chem 259:14282-14285
metK
1 aa cleaved
EG10589
Ferianc P., Farewell A., Nystrom T. (1998) The cadmium-stress stimulon of Escherichia coli K-12. Microbiology 144:1045-1050
metL
1 aa cleaved
EG10590
Zakin M.M., Duchange N., Ferrara P., Cohen G.N. (1983) Nucleotide sequence of the metL gene of Escherichia coli. Its product, the bifunctional aspartokinase ii-homoserine dehydrogenase II, and the bifunctional product of the thrA gene, aspartokinase I-homoserine dehydrogenase I, derive from a common ancestor. J Biol Chem 258:3028-3031
metR
0 aa cleaved
EG10591
Maxon M.E., Redfield B., Cai X.Y., Shoeman R., Fujita K., Fisher W., Stauffer G., Weissbach H., Brot N. (1989) Regulation of methionine synthesis in Escherichia coli: effect of the MetR protein on the expression of the metE and metR genes. Proc Natl Acad Sci U S A 86:85-89
mglB
23 aa cleaved
EG10593
Mahoney W.C., Hogg R.W., Hermodson M.A. (1981) The amino acid sequence of the D-galactose-binding protein from Escherichia coli B/r. J Biol Chem 256:4350-4356
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
mgsA
0 aa cleaved
EG12307
Totemeyer S., Booth N.A., Nichols W.W., Dunbar B., Booth I.R. (1998) From famine to feast: the role of methylglyoxal production in Escherichia coli. Mol Microbiol 27:553-562
Saadat D., Harrison D.H. (1998) Identification of catalytic bases in the active site of Escherichia coli methylglyoxal synthase: cloning, expression, and functional characterization of conserved aspartic acid residues. Biochemistry 37:10074-10086
mhpB
0 aa cleaved
EG20274
Bugg T.D. (1993) Overproduction, purification and properties of 2,3-dihydroxyphenylpropionate 1,2-dioxygenase from Escherichia coli. Biochim Biophys Acta 1202:258-264
mhpD
1 aa cleaved
EG14274
Pollard J.R., Bugg T.D. (1998) Purification, characterisation and reaction mechanism of monofunctional 2-hydroxypentadienoic acid hydratase from Escherichia coli. Eur J Biochem 251:98-106
minD
1 aa cleaved
EG10597
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
mioC
1 aa cleaved
EG11199
Birch O.M., Hewitson K.S., Fuhrmann M., Burgdorf K., Baldwin J.E., Roach P.L., Shaw N.M. (2000) MioC is an FMN binding protein that is essential for Escherichia coli biotin synthase activity in vitro. J Biol Chem 275:32277-32280
Frutiger S., Paquet N., Wilkins M., Appel R.D., Bairoch A., Hochstrasser D.F., unpublished in P03817
mipA
22 aa cleaved
EG13492
Vollmer W., von Rechenberg M., Holtje J.V. (1999) Demonstration of molecular interactions between the murein polymerase PBP1B, the lytic transglycosylase MltA, and the scaffolding protein MipA of Escherichia coli. J Biol Chem 274:6726-6734
moaA
0 aa cleaved
EG11595
Rivers S.L., McNairn E., Blasco F., Giordano G., Boxer D.H. (1993) Molecular genetic analysis of the moa operon of Escherichia coli K-12 required for molybdenum cofactor biosynthesis. Mol Microbiol 8:1071-1081
moaB
1 aa cleaved
EG11596
Rivers S.L., McNairn E., Blasco F., Giordano G., Boxer D.H. (1993) Molecular genetic analysis of the moa operon of Escherichia coli K-12 required for molybdenum cofactor biosynthesis. Mol Microbiol 8:1071-1081
moaC
1 aa cleaved
EG11666
Rivers S.L., McNairn E., Blasco F., Giordano G., Boxer D.H. (1993) Molecular genetic analysis of the moa operon of Escherichia coli K-12 required for molybdenum cofactor biosynthesis. Mol Microbiol 8:1071-1081
moaD
0 aa cleaved
EG11597
Pitterle D.M., Rajagopalan K.V. (1993) The biosynthesis of molybdopterin in Escherichia coli. Purification and characterization of the converting factor. J Biol Chem 268:13499-13505
moaE
1 aa cleaved
EG11598
Rivers S.L., McNairn E., Blasco F., Giordano G., Boxer D.H. (1993) Molecular genetic analysis of the moa operon of Escherichia coli K-12 required for molybdenum cofactor biosynthesis. Mol Microbiol 8:1071-1081
Pitterle D.M., Rajagopalan K.V. (1993) The biosynthesis of molybdopterin in Escherichia coli. Purification and characterization of the converting factor. J Biol Chem 268:13499-13505
mobA
0 aa cleaved
EG11829
Palmer T., Vasishta A., Whitty P.W., Boxer D.H. (1994) Isolation of protein FA, a product of the mob locus required for molybdenum cofactor biosynthesis in Escherichia coli. Eur J Biochem 222:687-692
mobB
1 aa cleaved
EG11828
Iobbi-Nivol C., Palmer T., Whitty P.W., McNairn E., Boxer D.H. (1995) The mob locus of Escherichia coli K12 required for molybdenum cofactor biosynthesis is expressed at very low levels. Microbiology 141:1663-1671
modA
24 aa cleaved
EG12427
Rech S., Wolin C., Gunsalus R.P. (1996) Properties of the periplasmic ModA molybdate-binding protein of Escherichia coli. J Biol Chem 271:2557-2562
mppA
22 aa cleaved
EG13376
Park J.T., Raychaudhuri D., Li H., Normark S., Mengin-Lecreulx D. (1998) MppA, a periplasmic binding protein essential for import of the bacterial cell wall peptide L-alanyl-gamma-D-glutamyl-meso-diaminopimelate. J Bacteriol 180:1215-1223
mraW
0 aa cleaved
EG11085
Carrion M., Gomez M.J., Merchante-Schubert R., Dongarra S., Ayala J.A. (1999) mraW, an essential gene at the dcw cluster of Escherichia coli codes for a cytoplasmic protein with methyltransferase activity. Biochimie 81:879-888
mreB
0 aa cleaved
EG10608
Doi M., Wachi M., Ishino F., Tomioka S., Ito M., Sakagami Y., Suzuki A., Matsuhashi M. (1988) Determinations of the DNA sequence of the mreB gene and of the gene products of the mre region that function in formation of the rod shape of Escherichia coli cells. J Bacteriol 170:4619-4624
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
mscL
0 aa cleaved
EG11180
Sukharev S.I., Blount P., Martinac B., Blattner F.R., Kung C. (1994) A large-conductance mechanosensitive channel in E. coli encoded by mscL alone. Nature 368:265-268
msrA
1 aa cleaved
EG11433
Rahman M.A., Nelson H., Weissbach H., Brot N. (1992) Cloning, sequencing, and expression of the Escherichia coli peptide methionine sulfoxide reductase gene. J Biol Chem 267:15549-15551
mtlD
0 aa cleaved
EG10616
Novotny M.J., Reizer J., Esch F., Saier M.H., Jr. (1984) Purification and properties of D-mannitol-1-phosphate dehydrogenase and D-glucitol-6-phosphate dehydrogenase from Escherichia coli. J Bacteriol 159:986-990
mukB
0 aa cleaved
EG10618
Niki H., Imamura R., Kitaoka M., Yamanaka K., Ogura T., Hiraga S. (1992) E.coli MukB protein involved in chromosome partition forms a homodimer with a rod-and-hinge structure having DNA binding and ATP/GTP binding activities. EMBO J 11:5101-5109
murA
0 aa cleaved
EG11358
Marquardt J.L., Siegele D.A., Kolter R., Walsh C.T. (1992) Cloning and sequencing of Escherichia coli murZ and purification of its product, a UDP-N-acetylglucosamine enolpyruvyl transferase. J Bacteriol 174:5748-5752
murC
0 aa cleaved
EG10619
Liger D., Masson A., Blanot D., van Heijenoort J., Parquet C. (1995) Over-production, purification and properties of the uridine-diphosphate-N-acetylmuramate:L-alanine ligase from Escherichia coli. Eur J Biochem 230:80-87
murD
1 aa cleaved
EG10620
Pratviel-Sosa F., Mengin-Lecreulx D., van Heijenoort J. (1991) Over-production, purification and properties of the uridine diphosphate N-acetylmuramoyl-L-alanine:D-glutamate ligase from Escherichia coli. Eur J Biochem 202:1169-1176
murE
1 aa cleaved
EG10621
Michaud C., Parquet C., Flouret B., Blanot D., van Heijenoort J. (1990) Revised interpretation of the sequence containing the murE gene encoding the UDP-N-acetylmuramyl-tripeptide synthetase of Escherichia coli. Biochem J 269:277-278
Michaud C., Mengin-Lecreulx D., van Heijenoort J., Blanot D. (1990) Over-production, purification and properties of the uridine-diphosphate-N-acetylmuramoyl-L-alanyl-D-glutamate: meso-2,6-diaminopimelate ligase from Escherichia coli. Eur J Biochem 194:853-861
murF
0 aa cleaved
EG10622
Duncan K., van Heijenoort J., Walsh C.T. (1990) Purification and characterization of the D-alanyl-D-alanine-adding enzyme from Escherichia coli. Biochemistry 29:2379-2386
murG
1 aa cleaved
EG10623
Mengin-Lecreulx D., Texier L., Rousseau M., van Heijenoort J. (1991) The murG gene of Escherichia coli codes for the UDP-N-acetylglucosamine: N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase involved in the membrane steps of peptidoglycan synthesis. J Bacteriol 173:4625-4636
mutH
1 aa cleaved
EG10624
Grafstrom R.H., Hoess R.H. (1987) Nucleotide sequence of the Escherichia coli mutH gene. Nucleic Acids Res 15:3073-3084
mutM
1 aa cleaved
EG10329
Boiteux S., O'Connor T.R., Laval J. (1987) Formamidopyrimidine-DNA glycosylase of Escherichia coli: cloning and sequencing of the fpg structural gene and overproduction of the protein. EMBO J 6:3177-3183
mutT
0 aa cleaved
EG10626
Bhatnagar S.K., Bessman M.J. (1988) Studies on the mutator gene, mutT of Escherichia coli. Molecular cloning of the gene, purification of the gene product, and identification of a novel nucleoside triphosphatase. J Biol Chem 263:8953-8957
nadB
0 aa cleaved
EG10631
Flachmann R., Kunz N., Seifert J., Gutlich M., Wientjes F.J., Laufer A., Gassen H.G. (1988) Molecular biology of pyridine nucleotide biosynthesis in Escherichia coli. Cloning and characterization of quinolinate synthesis genes nadA and nadB. Eur J Biochem 175:221-228
Seifert J., Kunz N., Flachmann R., Laufer A., Jany K.D., Gassen H.G. (1990) Expression of the E. coli nadB gene and characterization of the gene product L-aspartate oxidase. Biol Chem Hoppe Seyler 371:239-248
nadE
0 aa cleaved
EG10663
Allibert P., Willison J.C., Vignais P.M. (1987) Complementation of nitrogen-regulatory (ntr-like) mutations in Rhodobacter capsulatus by an Escherichia coli gene: cloning and sequencing of the gene and characterization of the gene product. J Bacteriol 169:260-271
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nadK
0 aa cleaved
EG12192
Kawai S., Mori S., Mukai T., Hashimoto W., Murata K. (2001) Molecular characterization of Escherichia coli NAD kinase. Eur J Biochem 268:4359-65
nanA
0 aa cleaved
EG10637
Ohta Y., Watanabe K., Kimura A. (1985) Complete nucleotide sequence of the E. coli N-acetylneuraminate lyase. Nucleic Acids Res 13:8843-8852
napA
36 aa cleaved
EG12067
Thomas G., Potter L., Cole J.A. (1999) The periplasmic nitrate reductase from Escherichia coli: a heterodimeric molybdoprotein with a double-arginine signal sequence and an unusual leader peptide cleavage site. FEMS Microbiol Lett 174:167-171
napB
26 aa cleaved
EG12061
Thomas G., Potter L., Cole J.A. (1999) The periplasmic nitrate reductase from Escherichia coli: a heterodimeric molybdoprotein with a double-arginine signal sequence and an unusual leader peptide cleavage site. FEMS Microbiol Lett 174:167-171
narG
1 aa cleaved
EG10638
Sodergren E.J., Hsu P.Y., DeMoss J.A. (1988) Roles of the narJ and narI gene products in the expression of nitrate reductase in Escherichia coli. J Biol Chem 263:16156-16162
narH
0 aa cleaved
EG10639
Sodergren E.J., Hsu P.Y., DeMoss J.A. (1988) Roles of the narJ and narI gene products in the expression of nitrate reductase in Escherichia coli. J Biol Chem 263:16156-16162
narI
0 aa cleaved
EG10640
Sodergren E.J., Hsu P.Y., DeMoss J.A. (1988) Roles of the narJ and narI gene products in the expression of nitrate reductase in Escherichia coli. J Biol Chem 263:16156-16162
narY
0 aa cleaved
EG10647
Blasco F., Iobbi C., Ratouchniak J., Bonnefoy V., Chippaux M. (1990) Nitrate reductases of Escherichia coli: sequence of the second nitrate reductase and comparison with that encoded by the narGHJI operon. Mol Gen Genet 222:104-111
ndh
1 aa cleaved
EG10649
Young I.G., Rogers B.L., Campbell H.D., Jaworowski A., Shaw D.C. (1981) Nucleotide sequence coding for the respiratory NADH dehydrogenase of Escherichia coli. UUG initiation codon. Eur J Biochem 116:165-170
ndk
1 aa cleaved
EG10650
Ray N.B., Mathews C.K. (1992) Nucleoside diphosphokinase: a functional link between intermediary metabolism and nucleic acid synthesis. Curr Top Cell Regul 33:343-357
nei
1 aa cleaved
EG13237
Jiang D., Hatahet Z., Blaisdell J.O., Melamede R.J., Wallace S.S. (1997) Escherichia coli endonuclease VIII: cloning, sequencing, and overexpression of the nei structural gene and characterization of nei and nei nth mutants. J Bacteriol 179:3773-3782
nfi
0 aa cleaved
EG11915
Guo G., Ding Y., Weiss B. (1997) nfi, the gene for endonuclease V in Escherichia coli K-12. J Bacteriol 179:310-316
nfnB
0 aa cleaved
EG20151
Vasudevan S.G., Shaw D.C., Armarego W.L. (1988) Dihydropteridine reductase from Escherichia coli. Biochem J 255:581-588
Anlezark G.M., Melton R.G., Sherwood R.F., Coles B., Friedlos F., Knox R.J. (1992) The bioactivation of 5-(aziridin-1-yl)-2,4-dinitrobenzamide (CB1954) I. Purification and properties of a nitroreductase enzyme from Escherichia coli--a potential enzyme for antibody-directed enzyme prodrug therapy (ADEPT). Biochem Pharmacol 44:2289-2295
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nhaA
0 aa cleaved
EG10652
Taglicht D., Padan E., Schuldiner S. (1991) Overproduction and purification of a functional Na+/H+ antiporter coded by nhaA (ant) from Escherichia coli. J Biol Chem 266:11289-11294
nikA
22 aa cleaved
EG12075
de Pina K., Navarro C., McWalter L., Boxer D.H., Price N.C., Kelly S.M., Mandrand-Berthelot M.A., Wu L.F. (1995) Purification and characterization of the periplasmic nickel-binding protein NikA of Escherichia coli K12. Eur J Biochem 227:857-65
nmpC
23 aa cleaved
EG10659
Henning U., Schmidmayr W., Hindennach I. (1977) Major proteins of the outer cell envelope membrane of Escherichia coli K-12: multiple species of protein I. Mol Gen Genet 154:293-298
nrdA
0 aa cleaved
EG10660
Sjoberg B.M., Eriksson S., Jornvall H., Carlquist M., Eklund H. (1985) Protein B1 of ribonucleotide reductase. Direct analytical data and comparisons with data indirectly deduced from the nucleotide sequence of the Escherichia coli nrdA gene. Eur J Biochem 150:423-427
nrdB
1 aa cleaved
EG10661
Salowe S.P., Stubbe J. (1986) Cloning, overproduction, and purification of the B2 subunit of ribonucleoside-diphosphate reductase. J Bacteriol 165:363-366
nrdD
0 aa cleaved
EG11417
Sun X., Harder J., Krook M., Jornvall H., Sjoberg B.M., Reichard P. (1993) A possible glycine radical in anaerobic ribonucleotide reductase from Escherichia coli: nucleotide sequence of the cloned nrdD gene. Proc Natl Acad Sci U S A 90:577-581
nrfA
26 aa cleaved
EG11781
Darwin A., Hussain H., Griffiths L., Grove J., Sambongi Y., Busby S., Cole J. (1993) Regulation and sequence of the structural gene for cytochrome c552 from Escherichia coli: not a hexahaem but a 50 kDa tetrahaem nitrite reductase. Mol Microbiol 9:1255-1265
nth
0 aa cleaved
EG10662
Asahara H., Wistort P.M., Bank J.F., Bakerian R.H., Cunningham R.P. (1989) Purification and characterization of Escherichia coli endonuclease III from the cloned nth gene. Biochemistry 28:4444-4449
nudF
0 aa cleaved
EG12184
Moreno-Bruna B., Baroja-Fernandez E., Munoz F.J., Bastarrica-Berasategui A., Zandueta-Criado A., Rodriguez-Lopez M., Lasa I., Akazawa T., Pozueta-Romero J. (2001) Adenosine diphosphate sugar pyrophosphatase prevents glycogen biosynthesis in Escherichia coli. Proc Natl Acad Sci U S A 98:8128-32
nuoB
0 aa cleaved
EG12083
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nuoC
1 aa cleaved
EG12084
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
David P., Baumann M., Wikstrom M., Finel M. (2002) Interaction of purified NDH-1 from Escherichia coli with ubiquinone analogues. Biochim Biophys Acta 1553:268-78
nuoE
0 aa cleaved
EG12086
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
nuoF
0 aa cleaved
EG11774
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
nuoG
1 aa cleaved
EG12087
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nuoI
0 aa cleaved
EG12089
Leif H., Sled V.D., Ohnishi T., Weiss H., Friedrich T. (1995) Isolation and characterization of the proton-translocating NADH: ubiquinone oxidoreductase from Escherichia coli. Eur J Biochem 230:538-48
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nusA
0 aa cleaved
EG10665
Ishii S., Kuroki K., Imamoto F. (1984) tRNAMetf2 gene in the leader region of the operon in Escherichia coli. Proc Natl Acad Sci U S A 81:409-413
Ito K., Egawa K., Nakamura Y. (1991) Genetic interaction between the beta' subunit of RNA polymerase and the arginine-rich domain of Escherichia coli nusA protein. J Bacteriol 173:1492-1501
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
nusG
1 aa cleaved
EG10667
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ogt
0 aa cleaved
EG10668
Potter P.M., Wilkinson M.C., Fitton J., Carr F.J., Brennand J., Cooper D.P., Margison G.P. (1987) Characterisation and nucleotide sequence of ogt, the O6-alkylguanine-DNA-alkyltransferase gene of E. coli. Nucleic Acids Res 15:9177-9193
ompA
21 aa cleaved
EG10669
Schweizer M., Hindennach I., Garten W., Henning U. (1978) Major proteins of the Escherichia coli outer cell envelope membrane. Interaction of protein II with lipopolysaccharide. Eur J Biochem 82:211-217
Chen R., Schmidmayr W., Kramer C., Chen-Schmeisser U., Henning U. (1980) Primary structure of major outer membrane protein II (ompA protein) of Escherichia coli K-12. Proc Natl Acad Sci U S A 77:4592-4596
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
ompC
21 aa cleaved
EG10670
Mizuno T., Chou M.Y., Inouye M. (1983) DNA sequence of the promoter region of the ompC gene and the amino acid sequence of the signal peptide of pro-OmpC protein of Escherichia coli. FEBS Lett 151:159-164
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
ompF
22 aa cleaved
EG10671
Chen R., Kramer C., Schmidmayr W., Chen-Schmeisser U., Henning U. (1982) Primary structure of major outer-membrane protein I (ompF protein, porin) of Escherichia coli B/r. Biochem J 203:33-43
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
ompG
21 aa cleaved
EG13428
Fajardo D.A., Cheung J., Ito C., Sugawara E., Nikaido H., Misra R. (1998) Biochemistry and regulation of a novel Escherichia coli K-12 porin protein, OmpG, which produces unusually large channels. J Bacteriol 180:4452-4459
ompL
20 aa cleaved
EG13374
Dartigalongue C., Nikaido H., Raina S. (2000) Protein folding in the periplasm in the absence of primary oxidant DsbA: modulation of redox potential in periplasmic space via OmpL porin. EMBO J 19:5980-8
ompN
21 aa cleaved
EG13375
Prilipov A., Phale P.S., Koebnik R., Widmer C., Rosenbusch J.P. (1998) Identification and characterization of two quiescent porin genes, nmpC and ompN, in Escherichia coli BE. J Bacteriol 180:3388-3392
ompT
20 aa cleaved
EG10673
Grodberg J., Lundrigan M.D., Toledo D.L., Mangel W.F., Dunn J.J. (1988) Complete nucleotide sequence and deduced amino acid sequence of the ompT gene of Escherichia coli K-12. Nucleic Acids Res 16:1209
Sugimura K., Nishihara T. (1988) Purification, characterization, and primary structure of Escherichia coli protease VII with specificity for paired basic residues: identity of protease VII and OmpT. J Bacteriol 170:5625-5632
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
ompW
21 aa cleaved
EG11124
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
ompX
23 aa cleaved
EG12135
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
oppA
26 aa cleaved
EG10674
Kashiwagi K., Yamaguchi Y., Sakai Y., Kobayashi H., Igarashi K. (1990) Identification of the polyamine-induced protein as a periplasmic oligopeptide binding protein. J Biol Chem 265:8387-8391
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Urbanowski M.L., Stauffer L.T., Stauffer G.V. (2000) The gcvB gene encodes a small untranslated RNA involved in expression of the dipeptide and oligopeptide transport systems in Escherichia coli. Mol Microbiol 37:856-868
orn
1 aa cleaved
EG12480
Zhang X., Zhu L., Deutscher M.P. (1998) Oligoribonuclease is encoded by a highly conserved gene in the 3'-5' exonuclease superfamily. J Bacteriol 180:2779-2781
osmC
1 aa cleaved
EG10680
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
osmY
28 aa cleaved
EG11391
Yim H.H., Villarejo M. (1992) osmY, a new hyperosmotically inducible gene, encodes a periplasmic protein in Escherichia coli. J Bacteriol 174:3637-3644
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
otsA
1 aa cleaved
EG11751
Kaasen I., McDougall J., Strom A.R. (1994) Analysis of the otsBA operon for osmoregulatory trehalose synthesis in Escherichia coli and homology of the OtsA and OtsB proteins to the yeast trehalose-6-phosphate synthase/phosphatase complex. Gene 145:9-15
otsB
0 aa cleaved
EG11752
Kaasen I., McDougall J., Strom A.R. (1994) Analysis of the otsBA operon for osmoregulatory trehalose synthesis in Escherichia coli and homology of the OtsA and OtsB proteins to the yeast trehalose-6-phosphate synthase/phosphatase complex. Gene 145:9-15
oxyR
0 aa cleaved
EG10681
Tao K., Makino K., Yonei S., Nakata A., Shinagawa H. (1991) Purification and characterization of the Escherichia coli OxyR protein, the positive regulator for a hydrogen peroxide-inducible regulon. J Biochem (Tokyo) 109:262-266
pabC
0 aa cleaved
EG11493
Green J.M., Nichols B.P. (1991) p-Aminobenzoate biosynthesis in Escherichia coli. Purification of aminodeoxychorismate lyase and cloning of pabC. J Biol Chem 266:12971-12975
Green J.M., Merkel W.K., Nichols B.P. (1992) Characterization and sequence of Escherichia coli pabC, the gene encoding aminodeoxychorismate lyase, a pyridoxal phosphate-containing enzyme. J Bacteriol 174:5317-5323
panB
0 aa cleaved
EG11675
Jones C.E., Brook J.M., Buck D., Abell C., Smith A.G. (1993) Cloning and sequencing of the Escherichia coli panB gene, which encodes ketopantoate hydroxymethyltransferase, and overexpression of the enzyme. J Bacteriol 175:2125-2130
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
panD
0 aa cleaved
EG11747
Ramjee M.K., Genschel U., Abell C., Smith A.G. (1997) Escherichia coli L-aspartate-alpha-decarboxylase: preprotein processing and observation of reaction intermediates by electrospray mass spectrometry. Biochem J 323:661-669
pbpG
28 aa cleaved
EG12015
Henderson T.A., Templin M., Young K.D. (1995) Identification and cloning of the gene encoding penicillin-binding protein 7 of Escherichia coli. J Bacteriol 177:2074-2079
pck
0 aa cleaved
EG10688
Medina V., Pontarollo R., Glaeske D., Tabel H., Goldie H. (1990) Sequence of the pckA gene of Escherichia coli K-12: relevance to genetic and allosteric regulation and homology of E. coli phosphoenolpyruvate carboxykinase with the enzymes from Trypanosoma brucei and Saccharomyces cerevisiae. J Bacteriol 172:7151-7156
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
pcm
1 aa cleaved
EG10689
Fu J.C., Ding L., Clarke S. (1991) Purification, gene cloning, and sequence analysis of an L-isoaspartyl protein carboxyl methyltransferase from Escherichia coli. J Biol Chem 266:14562-14572
pcnB
17 aa cleaved
EG10690
Cao G.J., Sarkar N. (1992) Identification of the gene for an Escherichia coli poly(A) polymerase. Proc Natl Acad Sci U S A 89:10380-10384
pdxH
1 aa cleaved
EG11487
Zhao G., Winkler M.E. (1995) Kinetic limitation and cellular amount of pyridoxine (pyridoxamine) 5'-phosphate oxidase of Escherichia coli K-12. J Bacteriol 177:883-891
pdxJ
1 aa cleaved
EG10693
Takiff H.E., Baker T., Copeland T., Chen S.M., Court D.L. (1992) Locating essential Escherichia coli genes by using mini-Tn10 transposons: the pdxJ operon. J Bacteriol 174:1544-1553
pepA
0 aa cleaved
EG10694
Stirling C.J., Colloms S.D., Collins J.F., Szatmari G., Sherratt D.J. (1989) xerB, an Escherichia coli gene required for plasmid ColE1 site-specific recombination, is identical to pepA, encoding aminopeptidase A, a protein with substantial similarity to bovine lens leucine aminopeptidase. EMBO J 8:1623-1627
pepD
1 aa cleaved
EG10695
Henrich B., Schroeder U., Frank R.W., Plapp R. (1989) Accurate mapping of the Escherichia coli pepD gene by sequence analysis of its 5' flanking region. Mol Gen Genet 215:369-373
Henrich B., Monnerjahn U., Plapp R. (1990) Peptidase D gene (pepD) of Escherichia coli K-12: nucleotide sequence, transcript mapping, and comparison with other peptidase genes. J Bacteriol 172:4641-4651
pepN
0 aa cleaved
EG10696
Bally M., Foglino M., Bruschi M., Murgier M., Lazdunski A. (1986) Nucleotide sequence of the promoter and amino-terminal encoding region of the Escherichia coli pepN gene. Eur J Biochem 155:565-569
pepP
1 aa cleaved
EG10697
Yoshimoto T., Murayama N., Honda T., Tone H., Tsuru D. (1988) Cloning and expression of aminopeptidase P gene from Escherichia coli HB101 and characterization of expressed enzyme. J Biochem(Tokyo) 104:93-97
Yoshimoto T., Tone H., Honda T., Osatomi K., Kobayashi R., Tsuru D. (1989) Sequencing and high expression of aminopeptidase P gene from Escherichia coli HB101. J Biochem (Tokyo) 105:412-416
pfkB
1 aa cleaved
EG10700
pflA
1 aa cleaved
EG10028
Rodel W., Plaga W., Frank R., Knappe J. (1988) Primary structures of Escherichia coli pyruvate formate-lyase and pyruvate-formate-lyase-activating enzyme deduced from the DNA nucleotide sequences. Eur J Biochem 177:153-158
pflB
1 aa cleaved
EG10701
Rodel W., Plaga W., Frank R., Knappe J. (1988) Primary structures of Escherichia coli pyruvate formate-lyase and pyruvate-formate-lyase-activating enzyme deduced from the DNA nucleotide sequences. Eur J Biochem 177:153-158
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
pgk
1 aa cleaved
EG10703
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Rompf A., Schmid R., Jahn D. (1998) Changes in protein synthesis as a consequence of heme depletion in Escherichia coli. Curr Microbiol 37:226-230
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
phoA
21 aa cleaved
EG10727
Bradshaw R.A., Cancedda F., Ericsson L.H., Neumann P.A., Piccoli S.P., Schlesinger M.J., Shriefer K., Walsh K.A. (1981) Amino acid sequence of Escherichia coli alkaline phosphatase. Proc Natl Acad Sci U S A 78:3473-3477
Kikuchi Y., Yoda K., Yamasaki M., Tamura G. (1981) The nucleotide sequence of the promoter and the amino-terminal region of alkaline phosphatase structural gene (phoA) of Escherichia coli. Nucleic Acids Res 9:5671-5678
phoH
0 aa cleaved
EG11734
Kim S.K., Makino K., Amemura M., Shinagawa H., Nakata A. (1993) Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 175:1316-1324
php
0 aa cleaved
EG12917
Buchbinder J.L., Stephenson R.C., Dresser M.J., Pitera J.W., Scanlan T.S., Fletterick R.J. (1998) Biochemical characterization and crystallographic structure of an Escherichia coli protein from the phosphotriesterase gene family. Biochemistry 37:5096-5106
phr
1 aa cleaved
EG10736
Sancar G.B., Smith F.W., Lorence M.C., Rupert C.S., Sancar A. (1984) Sequences of the Escherichia coli photolyase gene and protein. J Biol Chem 259:6033-6038
pldA
20 aa cleaved
EG10738
Homma H., Kobayashi T., Chiba N., Karasawa K., Mizushima H., Kudo I., Inoue K., Ikeda H., Sekiguchi M., Nojima S. (1984) The DNA sequence encoding gene, the structural gene for detergent-resistant phospholipase A of E. coli. J Biochem (Tokyo) 96:1655-1664
pldB
0 aa cleaved
EG10739
Karasawa K., Kudo I., Kobayashi T., Sa-Eki T., Inoue K.,Nojima S. (1985) Purification and characterization of lysophospholipase L2 of Escherichia coli K-12. J Biochem (Tokyo). 98:1117-1125
plsB
1 aa cleaved
EG10740
Green P.R., Vanaman T.C., Modrich P., Bell R.M. (1983) Partial NH2- and COOH-terminal sequence and cyanogen bromide peptide analysis of Escherichia coli sn-glycerol-3-phosphate acyltransferase. J Biol Chem 258:10862-10866
plsC
0 aa cleaved
EG11377
Coleman J. (1992) Characterization of the Escherichia coli gene for 1-acyl-sn-glycerol-3-phosphate acyltransferase (plsC). Mol Gen Genet 232:295-303
pncB
1 aa cleaved
EG10742
Wubbolts M.G., Terpstra P., van Beilen J.B., Kingma J., Meesters H.A., Witholt B. (1990) Variation of cofactor levels in Escherichia coli. Sequence analysis and expression of the pncB gene encoding nicotinic acid phosphoribosyltransferase. J Biol Chem 265:17665-17672
pntA
0 aa cleaved
EG10744
Clarke D.M., Loo T.W., Gillam S., Bragg P.D. (1986) Nucleotide sequence of the pntA and pntB genes encoding the pyridine nucleotide transhydrogenase of Escherichia coli. EurJBiochem 158:647-653
pntB
0 aa cleaved
EG10745
Clarke D.M., Loo T.W., Gillam S., Bragg P.D. (1986) Nucleotide sequence of the pntA and pntB genes encoding the pyridine nucleotide transhydrogenase of Escherichia coli. EurJBiochem 158:647-653
pnp
0 aa cleaved
EG10743
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
polB
1 aa cleaved
EG10747
Bonner C.A., Hays S., McEntee K., Goodman M.F. (1990) DNA polymerase II is encoded by the DNA damage-inducible dinA gene of Escherichia coli. Proc Natl Acad Sci U S A 87:7663-7667
Iwasaki H., Ishino Y., Toh H., Nakata A., Shinagawa H. (1991) Escherichia coli DNA polymerase II is homologous to alpha-like DNA polymerases. Mol Gen Genet 226:24-33
potD
23 aa cleaved
EG10752
Furuchi T., Kashiwagi K., Kobayashi H., Igarashi K. (1991) Characteristics of the gene for a spermidine and putrescine transport system that maps at 15 min on the Escherichia coli chromosome. J Biol Chem 266:20928-20933
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
potF
26 aa cleaved
EG11629
Pistocchi R., Kashiwagi K., Miyamoto S., Nukui E., Sadakata Y., Kobayashi H., Igarashi K. (1993) Characteristics of the operon for a putrescine transport system that maps at 19 minutes on the Escherichia coli chromosome. J Biol Chem 268:146-152
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
poxB
0 aa cleaved
EG10754
Recny M.A., Grabau C., Cronan J.E., Jr., Hager L.P. (1985) Characterization of the alpha-peptide released upon protease activation of pyruvate oxidase. J Biol Chem 260:14287-14291
ppa
1 aa cleaved
EG10755
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ppiA
24 aa cleaved
EG10757
Liu J., Walsh C.T. (1990) Peptidyl-prolyl cis-trans-isomerase from Escherichia coli: a periplasmic homolog of cyclophilin that is not inhibited by cyclosporin A. Proc Natl Acad Sci U S A 87:4028-4032
ppiB
0 aa cleaved
EG10758
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ppiC
1 aa cleaved
EG12352
Rahfeld J.U., Schierhorn A., Mann K., Fischer G. (1994) A novel peptidyl-prolyl cis/trans isomerase from Escherichia coli. FEBS Lett 343:65-69
ppk
1 aa cleaved
EG11510
Akiyama M., Crooke E., Kornberg A. (1992) The polyphosphate kinase gene of Escherichia coli. Isolation and sequence of the ppk gene and membrane location of the protein. J Biol Chem 267:22556-22561
pps
1 aa cleaved
EG10759
Niersbach M., Kreuzaler F., Geerse R.H., Postma P.W., Hirsch H.J. (1992) Cloning and nucleotide sequence of the Escherichia coli K-12 ppsA gene, encoding PEP synthase. Mol Gen Genet 231:332-336
ppx
1 aa cleaved
EG11403
Akiyama M., Crooke E., Kornberg A. (1993) An exopolyphosphatase of Escherichia coli. The enzyme and its ppx gene in a polyphosphate operon. J Biol Chem 268:633-639
prc
22 aa cleaved
EG10760
Silber K.R., Keiler K.C., Sauer R.T. (1992) Tsp: a tail-specific protease that selectively degrades proteins with nonpolar C termini. Proc Natl Acad Sci U S A 89:295-299
prfB
0 aa cleaved
EG10762
Craigen W.J., Cook R.G., Tate W.P., Caskey C.T. (1985) Bacterial peptide chain release factors: conserved primary structure and possible frameshift regulation of release factor 2. Proc Natl Acad Sci U S A 82:3616-3620
prfC
1 aa cleaved
EG12114
Mikuni O., Ito K., Moffat J., Matsumura K., McCaughan K., Nobukuni T., Tate W., Nakamura Y. (1994) Identification of the prfC gene, which encodes peptide-chain-release factor 3 of Escherichia coli. Proc Natl Acad Sci U S A 91:5798-5802
Grentzmann G., Brechemier-Baey D., Heurgue V., Mora L., Buckingham R.H. (1994) Localization and characterization of the gene encoding release factor RF3 in Escherichia coli. Proc Natl Acad Sci U S A 91:5848-5852
Mortensen K.K., Hansen H.F., Grentzmann G., Buckingham R.H., Sperling-Petersen H.U. (1995) Osmo-expression and fast two-step purification of Escherichia coli translation termination factor RF-3. Eur J Biochem 234:732-736
priA
0 aa cleaved
EG10763
Lee E.H., Masai H., Allen G.C., Jr., Kornberg A. (1990) The priA gene encoding the primosomal replicative n' protein of Escherichia coli. Proc Natl Acad Sci U S A 87:4620-4624
Nurse P., DiGate R.J., Zavitz K.H., Marians K.J. (1990) Molecular cloning and DNA sequence analysis of Escherichia coli priA, the gene encoding the primosomal protein replication factor Y. Proc Natl Acad Sci U S A 87:4615-4619
priB
1 aa cleaved
EG10764
Allen G.C., Jr., Kornberg A. (1991) The priB gene encoding the primosomal replication n protein of Escherichia coli. J Biol Chem 266:11610-11613
Zavitz K.H., DiGate R.J., Marians K.J. (1991) The priB and priC replication proteins of Escherichia coli. Genes, DNA sequence, overexpression, and purification. J Biol Chem 266:13988-13995
priC
1 aa cleaved
EG10765
Zavitz K.H., DiGate R.J., Marians K.J. (1991) The priB and priC replication proteins of Escherichia coli. Genes, DNA sequence, overexpression, and purification. J Biol Chem 266:13988-13995
prlC
1 aa cleaved
EG11441
Jiang X., Zhang M., Ding Y., Yao J., Chen H., Zhu D.,Muramatu M. (1998) Escherichia coli prlC gene encodes a trypsin-like proteinase regulating the cell cycle. J. Biochem. (Tokyo). 124:980-985.
proA
0 aa cleaved
EG10767
Deutch A.H., Rushlow K.E., Smith C.J. (1984) Analysis of the Escherichia coli proBA locus by DNA and protein sequencing. Nucleic Acids Res 12:6337-6355
proB
0 aa cleaved
EG10768
Deutch A.H., Rushlow K.E., Smith C.J. (1984) Analysis of the Escherichia coli proBA locus by DNA and protein sequencing. Nucleic Acids Res 12:6337-6355
proC
0 aa cleaved
EG10769
Deutch A.H., Smith C.J., Rushlow K.E., Kretschmer P.J. (1982) Escherichia coli delta 1-pyrroline-5-carboxylate reductase: gene sequence, protein overproduction and purification. Nucleic Acids Res 10:7701-7714
proS
0 aa cleaved
EG10770
Eriani G., Delarue M., Poch O., Gangloff J., Moras D. (1990) Partition of tRNA synthetases into two classes based on mutually exclusive sets of sequence motifs. Nature 347:203-206
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
proX
21 aa cleaved
EG10773
Barron A., Jung J.U., Villarejo M. (1987) Purification and characterization of a glycine betaine binding protein from Escherichia coli. J Biol Chem 262:11841-11846
prpC
17 aa cleaved
EG11756
Patton A.J., Hough D.W., Towner P., Danson M.J. (1993) Does Escherichia coli possess a second citrate synthase gene? Eur J Biochem 214:75-81
prs
1 aa cleaved
EG10774
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Karzai A.W., Sauer R.T. (2001) Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci U S A 98:3040-4
psd
0 aa cleaved
EG10775
Li Q.X., Dowhan W. (1988) Structural characterization of Escherichia coli phosphatidylserine decarboxylase. J Biol Chem 263:11516-11522
pspA
1 aa cleaved
EG10776
Carlson J.H., Silhavy T.J. (1993) Signal sequence processing is required for the assembly of LamB trimers in the outer membrane of Escherichia coli. J Bacteriol 175:3327-3334
Kobayashi H., Yamamoto M., Aono R. (1998) Appearance of a stress-response protein, phage-shock protein A, in Escherichia coli exposed to hydrophobic organic solvents. Microbiology 144:353-359
pspE
19 aa cleaved
EG10780
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
pssA
0 aa cleaved
EG10781
DeChavigny A., Heacock P.N., Dowhan W. (1991) Sequence and inactivation of the pss gene of Escherichia coli. Phosphatidylethanolamine may not be essential for cell viability. J Biol Chem 266:5323-5332
pstS
25 aa cleaved
EG10734
Surin B.P., Jans D.A., Fimmel A.L., Shaw D.C., Cox G.B., Rosenberg H. (1984) Structural gene for the phosphate-repressible phosphate-binding protein of Escherichia coli has its own promoter: complete nucleotide sequence of the phoS gene. J Bacteriol 157:772-778
Magota K., Otsuji N., Miki T., Horiuchi T., Tsunasawa S., Kondo J., Sakiyama F., Amemura M., Morita T., Shinagawa H., Nakata, A. (1984) Nucleotide sequence of the phoS gene, the structural gene for the phosphate-binding protein of Escherichia coli. J Bacteriol 157:909-917
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
pta
1 aa cleaved
EG20173
Matsuyama A., Yamamoto-Otake H., Hewitt J., MacGillivray R.T., Nakano E. (1994) Nucleotide sequence of the phosphotransacetylase gene of Escherichia coli strain K12. Biochim Biophys Acta 1219:559-562
Kakuda H., Hosono K., Shiroishi K., Ichihara S. (1994) Identification and characterization of the ackA (acetate kinase A)-pta (phosphotransacetylase) operon and complementation analysis of acetate utilization by an ackA-pta deletion mutant of Escherichia coli. J Biochem (Tokyo) 116:916-922
pth
0 aa cleaved
EG10785
Garcia-Villegas M.R., De La Vega F.M., Galindo J.M., Segura M., Buckingham R.H., Guarneros G. (1991) Peptidyl-tRNA hydrolase is involved in lambda inhibition of host protein synthesis. EMBO J 10:3549-3555
ptrB
0 aa cleaved
EG11004
Kanatani A., Masuda T., Shimoda T., Misoka F., Lin X.S., Yoshimoto T., Tsuru D. (1991) Protease II from Escherichia coli: sequencing and expression of the enzyme gene and characterization of the expressed enzyme. J Biochem (Tokyo) 110:315-320
ptsG
0 aa cleaved
EG10787
Erni B., Zanolari B. (1986) Glucose-permease of the bacterial phosphotransferase system. Gene cloning, overproduction, and amino acid sequence of enzyme IIGlc. J Biol Chem 261:16398-16403
ptsH
0 aa cleaved
EG10788
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
ptsI
0 aa cleaved
EG10789
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
purA
1 aa cleaved
EG10790
Wolfe S.A., Smith J.M. (1988) Nucleotide sequence and analysis of the purA gene encoding adenylosuccinate synthetase of Escherichia coli K12. J Biol Chem 263:19147-19153
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
purB
0 aa cleaved
EG11314
He B., Smith J.M., Zalkin H. (1992) Escherichia coli purB gene: cloning, nucleotide sequence, and regulation by purR. J Bacteriol 174:130-136
purC
0 aa cleaved
EG10791
Tiedeman A.A., DeMarini D.J., Parker J., Smith J.M. (1990) DNA sequence of the purC gene encoding 5'-phosphoribosyl-5-aminoimidazole-4-N-succinocarboxamide synthetase and organization of the dapA-purC region of Escherichia coli K-12. J Bacteriol 172:6035-6041
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
purE
1 aa cleaved
EG10793
Meyer E., Leonard N.J., Bhat B., Stubbe J., Smith J.M. (1992) Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway. Biochemistry 31:5022-5032
purF
1 aa cleaved
EG10794
Tso J.Y., Hermodson M.A., Zalkin H. (1982) Glutamine phosphoribosylpyrophosphate amidotransferase from cloned Escherichia coli purF. NH2-terminal amino acid sequence, identification of the glutamine site, and trace metal analysis. J Biol Chem 257:3532-3536
purH
0 aa cleaved
EG10795
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
purK
0 aa cleaved
EG10796
Meyer E., Leonard N.J., Bhat B., Stubbe J., Smith J.M. (1992) Purification and characterization of the purE, purK, and purC gene products: identification of a previously unrecognized energy requirement in the purine biosynthetic pathway. Biochemistry 31:5022-5032
purL
0 aa cleaved
EG10797
Schendel F.J., Mueller E., Stubbe J., Shiau A., Smith J.M. (1989) Formylglycinamide ribonucleotide synthetase from Escherichia coli: cloning, sequencing, overproduction, isolation, and characterization. Biochemistry 28:2459-2471
purM
1 aa cleaved
EG10798
Schrimsher J.L., Schendel F.J., Stubbe J., Smith J.M. (1986) Purification and characterization of aminoimidazole ribonucleotide synthetase from Escherichia coli. Biochemistry 25:4366-4371
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
purN
0 aa cleaved
EG10799
Inglese J., Smith J.M., Benkovic S.J. (1990) Active-site mapping and site-specific mutagenesis of glycinamide ribonucleotide transformylase from Escherichia coli. Biochemistry 29:6678-6687
purT
1 aa cleaved
EG11809
Marolewski A., Smith J.M., Benkovic S.J. (1994) Cloning and characterization of a new purine biosynthetic enzyme: a non-folate glycinamide ribonucleotide transformylase from E. coli. Biochemistry 33:2531-2537
purU
0 aa cleaved
EG11819
Nagy P.L., McCorkle G.M., Zalkin H. (1993) purU, a source of formate for purT-dependent phosphoribosyl-N-formylglycinamide synthesis. J Bacteriol 175:7066-7073
putP
0/1 aa cleaved
EG10802
Hanada K., Yoshida T., Yamato I., Anraku Y. (1992) Sodium ion and proline binding sites in the Na+/proline symport carrier of Escherichia coli. Biochim Biophys Acta 1105:61-66
puuD
0 aa cleaved
EG13909
Kurihara S., Oda S., Kato K., Kim H.G., Koyanagi T., Kumagai H., Suzuki H. (2005) A novel putrescine utilization pathway involves gamma-glutamylated intermediates of Escherichia coli K-12. J Biol Chem 280:4602-8
pykA
1 aa cleaved
EG10803
Valentini G., Stoppini M., Speranza M.L., Malcovati M., Ferri G. (1991) Bacterial pyruvate kinases have a shorter N-terminal domain. Biol Chem Hoppe Seyler 372:91-93
pykF
0 aa cleaved
EG10804
Valentini G., Stoppini M., Speranza M.L., Malcovati M., Ferri G. (1991) Bacterial pyruvate kinases have a shorter N-terminal domain. Biol Chem Hoppe Seyler 372:91-93
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
pyrB
1 aa cleaved
EG10805
Konigsberg W.H., Henderson L. (1983) Amino acid sequence of the catalytic subunit of aspartate transcarbamoylase from Escherichia coli. Proc Natl Acad Sci U S A 80:2467-2471
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
pyrC
1 aa cleaved
EG10806
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
pyrD
0 aa cleaved
EG10807
Larsen J.N., Jensen K.F. (1985) Nucleotide sequence of the pyrD gene of Escherichia coli and characterization of the flavoprotein dihydroorotate dehydrogenase. Eur J Biochem 151:59-65
pyrE
1 aa cleaved
EG10808
Poulsen P., Jensen K.F., Valentin-Hansen P., Carlsson P., Lundberg L.G. (1983) Nucleotide sequence of the Escherichia coli pyrE gene and of the DNA in front of the protein-coding region. Eur J Biochem 135:223-229
pyrG
1 aa cleaved
EG10810
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
pyrH
1 aa cleaved
EG11539
Serina L., Blondin C., Krin E., Sismeiro O., Danchin A., Sakamoto H., Gilles A.M., Barzu O. (1995) Escherichia coli UMP-kinase, a member of the aspartokinase family, is a hexamer regulated by guanine nucleotides and UTP. Biochemistry 34:5066-5074
pyrI
1 aa cleaved
EG10811
Weber K. (1968) New structural model of E. coli aspartate transcarbamylase and the amino-acid sequence of the regulatory polypeptide chain. Nature 218:1116-1119
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
racC
0 aa cleaved
EG10813
Luisi-DeLuca C., Clark A.J., Kolodner R.D. (1988) Analysis of the recE locus of Escherichia coli K-12 by use of polyclonal antibodies to exonuclease VIII. J Bacteriol 170:5797-5805
rbfA
1 aa cleaved
EG11178
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
rbsA
0 aa cleaved
EG10814
Buckel S.D., Bell A.W., Rao J.K., Hermodson M.A. (1986) An analysis of the structure of the product of the rbsA gene of Escherichia coli K12. J Biol Chem 261:7659-7662
rbsB
25 aa cleaved
EG10815
Groarke J.M., Mahoney W.C., Hope J.N., Furlong C.E., Robb F.T., Zalkin H., Hermodson M.A. (1983) The amino acid sequence of D-ribose-binding protein from Escherichia coli K12. J Biol Chem 258:12952-12956
Ohba A., Mizushima T., Katayama T., Sekimizu K.(1997) Amounts of proteins altered by mutations in the dnaA gene of Escherichia coli. FEBS Lett 404:125-128
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rbsK
0 aa cleaved
EG10818
Hope J.N., Bell A.W., Hermodson M.A., Groarke J.M. (1986) Ribokinase from Escherichia coli K12. Nucleotide sequence and overexpression of the rbsK gene and purification of ribokinase. J Biol Chem 261:7663-7668
rbsR
1 aa cleaved
EG10819
Mauzy C.A., Hermodson M.A. (1992) Structural and functional analyses of the repressor, RbsR, of the ribose operon of Escherichia coli. Protein Sci 1:831-842
rcsA
1 aa cleaved
EG10820
Stout V., Torres-Cabassa A., Maurizi M.R., Gutnick D., Gottesman S. (1991) RcsA, an unstable positive regulator of capsular polysaccharide synthesis. J Bacteriol 173:1738-1747
rdgC
0 aa cleaved
EG12158
Murphy L.D., Rosner J.L., Zimmerman S.B., Esposito D. (1999) Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli. J Bacteriol 181:3842-3844
recA
1 aa cleaved
EG10823
Horii T., Ogawa T., Ogawa H. (1980) Organization of the recA gene of Escherichia coli. Proc Natl Acad Sci U S A 77:313-317
Sancar A., Stachelek C., Konigsberg W., Rupp W.D. (1980) Sequences of the recA gene and protein. Proc Natl Acad Sci U S A 77:2611-2615
recB
1 aa cleaved
EG10824
Masterson C., Boehmer P.E., McDonald F., Chaudhuri S., Hickson I.D., Emmerson P.T. (1992) Reconstitution of the activities of the RecBCD holoenzyme of Escherichia coli from the purified subunits. J Biol Chem 267:13564-13572
recC
0 aa cleaved
EG10825
Finch P.W., Wilson R.E., Brown K., Hickson I.D., Tomkinson A.E., Emmerson P.T. (1986) Complete nucleotide sequence of the Escherichia coli recC gene and of the thyA-recC intergenic region. Nucleic Acids Res 14:4437-4451
recD
0 aa cleaved
EG10826
Masterson C., Boehmer P.E., McDonald F., Chaudhuri S., Hickson I.D., Emmerson P.T. (1992) Reconstitution of the activities of the RecBCD holoenzyme of Escherichia coli from the purified subunits. J Biol Chem 267:13564-13572
recE
1 aa cleaved
EG10827
Luisi-DeLuca C., Clark A.J., Kolodner R.D. (1988) Analysis of the recE locus of Escherichia coli K-12 by use of polyclonal antibodies to exonuclease VIII. J Bacteriol 170:5797-5805
recF
1 aa cleaved
EG10828
Griffin T.J.t., Kolodner R.D. (1990) Purification and preliminary characterization of the Escherichia coli K-12 recF protein. J Bacteriol 172:6291-6299
recQ
1 aa cleaved
EG10833
Umezu K., Nakayama K., Nakayama H. (1990) Escherichia coli RecQ protein is a DNA helicase. Proc Natl Acad Sci U S A 87:5363-5367
recT
0 aa cleaved
EG11899
Hall S.D., Kane M.F., Kolodner R.D. (1993) Identification and characterization of the Escherichia coli RecT protein, a protein encoded by the recE region that promotes renaturation of homologous single-stranded DNA. J Bacteriol 175:277-287
rfaC
0 aa cleaved
EG11189
Chen L., Coleman W.G., Jr. (1993) Cloning and characterization of the Escherichia coli K-12 rfa-2 (rfaC) gene, a gene required for lipopolysaccharide inner core synthesis. J Bacteriol 175:2534-2540
rfaD
0 aa cleaved
EG10838
Pegues J.C., Chen L.S., Gordon A.W., Ding L., Coleman W.G., Jr. (1990) Cloning, expression, and characterization of the Escherichia coli K-12 rfaD gene. J Bacteriol 172:4652-4660
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rhlB
1 aa cleaved
EG10844
Py B., Higgins C.F., Krisch H.M., Carpousis A.J. (1996) A DEAD-box RNA helicase in the Escherichia coli RNA degradosome. Nature 381:169-172
rho
0 aa cleaved
EG10845
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Pichoff S., Alibaud L., Guedant A., Castanie M.P., Bouche J.P. (1998) An Escherichia coli gene (yaeO) suppresses temperature-sensitive mutations in essential genes by modulating Rho-dependent transcription termination. Mol Microbiol 29:859-869
ribA
0 aa cleaved
EG11331
Richter G., Ritz H., Katzenmeier G., Volk R., Kohnle A., Lottspeich F., Allendorf D., Bacher A. (1993) Biosynthesis of riboflavin: cloning, sequencing, mapping, and expression of the gene coding for GTP cyclohydrolase II in Escherichia coli. J Bacteriol 175:4045-4051
ribB
0 aa cleaved
EG10465
Richter G., Volk R., Krieger C., Lahm H.W., Rothlisberger U., Bacher A. (1992) Biosynthesis of riboflavin: cloning, sequencing, and expression of the gene coding for 3,4-dihydroxy-2-butanone 4-phosphate synthase of Escherichia coli. J Bacteriol 174:4050-4056
rluA
1 aa cleaved
EG12609
Wrzesinski J., Nurse K., Bakin A., Lane B.G., Ofengand J. (1995) A dual-specificity pseudouridine synthase: an Escherichia coli synthase purified and cloned on the basis of its specificity for psi 746 in 23S RNA is also specific for psi 32 in tRNA(phe). RNA 1:437-448
rluD
1 aa cleaved
EG12098
Wrzesinski J., Bakin A., Ofengand J., Lane B.G. (2000) Isolation and properties of Escherichia coli 23S-RNA pseudouridine 1911, 1915, 1917 synthase (RluD). IUBMB Life 50:33-7
rmf
0 aa cleaved
EG50004
Wada A., Yamazaki Y., Fujita N., Ishihama A. (1990) Structure and probable genetic location of a "ribosome modulation factor" associated with 100S ribosomes in stationary-phase Escherichia coli cells. Proc Natl Acad Sci U S A 87:2657-2661
rna
23 aa cleaved
EG10856
Meador J.d., Kennell D. (1990) Cloning and sequencing the gene encoding Escherichia coli ribonuclease I: exact physical mapping using the genome library. Gene 95:1-7
rnr
1 aa cleaved
EG11259
Cheng Z.F., Deutscher M.P. (2002) Purification and Characterization of the Escherichia coli Exoribonuclease RNase R. COMPARISON WITH RNase II. J Biol Chem 277:21624-9
rnd
0 aa cleaved
EG10858
Zhang J.R., Deutscher M.P. (1988) Escherichia coli RNase D: sequencing of the rnd structural gene and purification of the overexpressed protein. Nucleic Acids Res 16:6265-6278
rne
0 aa cleaved
EG10859
Chauhan A.K., Miczak A., Taraseviciene L., Apirion D. (1991) Sequencing and expression of the rne gene of Escherichia coli. Nucleic Acids Res 19:125-129
rng
1 aa cleaved
EG11299
Okada Y., Wachi M., Hirata A., Suzuki K., Nagai K., Matsuhashi M. (1994) Cytoplasmic axial filaments in Escherichia coli cells: possible function in the mechanism of chromosome segregation and cell division. J Bacteriol 176:917-922
rnhA
0 aa cleaved
EG10860
Kanaya S., Kimura S., Katsuda C., Ikehara M. (1990) Role of cysteine residues in ribonuclease H from Escherichia coli. Site-directed mutagenesis and chemical modification. Biochem J 271:59-66
rnhB
0 aa cleaved
EG10861
Itaya M. (1990) Isolation and characterization of a second RNase H (RNase HII) of Escherichia coli K-12 encoded by the rnhB gene. Proc Natl Acad Sci U S A 87:8587-8591
rob
0 aa cleaved
EG11366
Skarstad K., Thony B., Hwang D.S., Kornberg A. (1993) A novel binding protein of the origin of the Escherichia coli chromosome. J Biol Chem 268:5365-5370
rof
0 aa cleaved
EG13221
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rph
0 aa cleaved
EG10863
Ost K.A., Deutscher M.P. (1991) Escherichia coli orfE (upstream of pyrE) encodes RNase PH. J Bacteriol 173:5589-5591
rpiA
0 aa cleaved
EG11443
Hove-Jensen B., Maigaard M. (1993) Escherichia coli rpiA gene encoding ribose phosphate isomerase A. J Bacteriol 175:5628-5635
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
rplA
1 aa cleaved
EG10864
Brauer D., Ochsner I. (1978) The primary structure of protein L1 from the large ribosomal subunit of Escherichia coli. FEBS Lett 96:317-321
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rplB
1 aa cleaved
EG10865
Zurawski G., Zurawski S.M. (1985) Structure of the Escherichia coli S10 ribosomal protein operon. Nucleic Acids Res 13:4521-4526
rplC
0 aa cleaved
EG10866
Muranova T.A., Muranov A.V., Markova L.F., Ovchinnikov Y.A. (1978) The primary structure of ribosomal protein L3 from Escherichia coli 70 S ribosomes. FEBS Lett 96:301-305
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplD
0 aa cleaved
EG10867
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rplE
1 aa cleaved
EG10868
Chen R., Ehrke G. (1976) The primary structure of the 5 S RNA binding protein L5 of Escherichia coli ribosomes. FEBS Lett 69:240-245
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplF
1 aa cleaved
EG10869
Chen R., Arfsten U., Chen-Schmeisser U. (1977) The primary structure of protein L6 from the aminoacyl-tRNA binding site of the Escherichia coli ribosome. Hoppe Seylers Z Physiol Chem 358:531-535
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rplI
0 aa cleaved
EG10870
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
rplJ
1 aa cleaved
EG10871
Pettersson I., Hardy S.J.S., Liljas A. (1976) The ribosomal protein L8 is a complex L7/L12 and L10. FEBS Lett 64:135-138
Dovgas N.V., Vinokurov L.M., Velmoga I.S., Alakhov Y.B., Ovchinnikov Y.A. (1976) The primary structure of protein L10 from Escherichia coli ribosomes. FEBS Lett 67:58-61
Dovgas N.V., Vinokurov L.M., Velmoga I.S., Alakhov Y.B., Ovchinnikov Y.A. (1976) The primary structure of protein L10 from Escherichia coli ribosomes. FEBS Lett 67:58-61
rplK
1 aa cleaved
EG10872
Dognin M.J., Wittmann-Liebold B. (1980) Purification and primary structure determination of the N-terminal blocked protein, L11, from Escherichia coli ribosomes. Eur J Biochem 112:131-151
rplL
1 aa cleaved
EG10873
Terhorst C., Moller W., Laursen R., Wittmann-Liebold B. (1973) The primary structure of an acidic protein from 50-S ribosomes of Escherichia coli which is involved in GTP hydrolysis dependent on elongation factors G and T. Eur J Biochem 34:138-152
Pettersson I., Hardy S.J.S., Liljas A. (1976) The ribosomal protein L8 is a complex L7/L12 and L10. FEBS Lett 64:135-138
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplM
0 aa cleaved
EG10874
Mende L. (1978) The primary structure of protein L13 from the large subunit of Escherichia coli ribosomes. FEBS Lett 96:313-316
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplN
0 aa cleaved
EG10875
Morinaga T., Funatsu G., Funatsu M. (1978) Primary structure of protein L14 isolated from Escherichia coli ribosomes. FEBS Lett 91:74-77
rplO
0 aa cleaved
EG10876
Giorginis S., Chen R. (1977) The primary structure of protein L15 located at the peptidyltransferase center of Escherichia coli ribosomes. FEBS Lett 84:347-350
rplP
0 aa cleaved
EG10877
Brosius J., Chen R. (1976) The primary structure of protein L16 located at the peptidyltransferase center of Escherichia coli ribosomes. FEBS Lett 68:105-109
rplQ
0 aa cleaved
EG10878
Rombauts W., Feytons V., Wittmann-Liebold B. (1982) The primary structure of protein L17 from the Escherichia coli ribosome, FEBS Lett 149:320-327
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplR
0 aa cleaved
EG10879
Brosius J., Schiltz E., Chen R. (1975) The primary structure of the 5S RNA binding protein L18 from Escherichia coli ribosomes. FEBS Lett 56:359-361
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplS
1 aa cleaved
EG10880
Brosius J., Arfsten U. (1978) Primary structure of protein L19 from the large subunit of Escherichia coli ribosomes. Biochemistry 17:508-516
rplT
1 aa cleaved
EG10881
Wittmann-Liebold B., Seib C. (1979) The primary structure of protein L20 from the large subunit of the Escherichia coli ribosome. FEBS Lett 103:61-65
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rplU
0 aa cleaved
EG50001
Heiland I., Wittmann-Liebold B. (1979) Amino acid sequence of the ribosomal protein L21 of Escherichia coli. Biochemistry 18:4605-4612
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
rplV
0 aa cleaved
EG10882
Wittmann-Liebold B., Greuer B. (1980) Amino acid sequence of protein L22 from the large subunit of the Escherichia coli ribosome. FEBS Lett 121:105-112
rplW
0 aa cleaved
EG10883
Wittmann-Liebold B., Greuer B. (1979) Primary structure of protein L23 from the Escherichia coli ribosome. FEBS Lett 108:69-74
rplX
1 aa cleaved
EG10884
Wittmann-Liebold B. (1979) Primary structure of protein L24 from the Escherichia coli ribosome. FEBS Lett 108:75-80
rplY
0 aa cleaved
EG10885
Bitar K.G., Wittmann-Liebold B. (1975) The primary structure of the 5s rRNA binding protein L25 of Escherichia coli ribosomes. Hoppe Seylers Z Physiol Chem 356:1343-1352
Dovgas N.V., Markova L.F., Mednikova T.A., Vinokurov L.M., Alakhov Y.B., Ovhinnikov Y.A. (1975) The primary structure of the 5 S RNA binding protein L25 from Escherichia coli ribosomes. FEBS Lett 53:351-354
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
rpmA
1 aa cleaved
EG50002
Chen R., Mende L., Arfsten U. (1975) The primary structure of protein L27 from the peptidyl-tRNA binding site of Escherichia coli ribosomes. FEBS Lett 59:96-99
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmB
1 aa cleaved
EG10886
Wittmann-Liebold B., Marzinzig E. (1977) Primary structure of protein L28 from the large subunit of Escherichia coli ribosomes. FEBS Lett 81:214-217
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmC
0 aa cleaved
EG10887
Bitar K.G. (1975) The primary structure of the ribosomal protein L29 from Escherichia coli. Biochim Biophys Acta 386:99-106
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmD
1 aa cleaved
EG10888
Ritter E., Wittmann-Liebold B. (1975) The primary structure of protein L30 from Escherichia coli ribosomes. FEBS Lett 60:153-155
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmE
0 aa cleaved
EG10889
Brosius J. (1978) Primary structure of Escherichia coli ribosomal protein L31. Biochemistry 17:501-508
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmF
1 aa cleaved
EG10890
Wittmann-Liebold B., Greuer B., Pannenbecker R. (1975) The primary structure of protein L32 from the 50S subunit of Escherichia coli ribosomes. Hoppe Seylers Z Physiol Chem 356:1977-1979
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmG
1 aa cleaved
EG10891
Wittmann-Liebold B., Pannenbecker R. (1976) Primary structure of protein L33 from the large subunit of the Escherichia coli ribosome. FEBS Lett 68:115-118
rpmH
0 aa cleaved
EG10892
Chen R. (1976) The sequence determination of a protein in a micro scale: the sequence analysis of ribosomal protein L34 of Escherichia coli. Hoppe Seylers Z Physiol Chem 357:873-886
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmI
1 aa cleaved
EG11231
Kashiwagi K., Igarashi K. (1987) Nonspecific inhibition of Escherichia coli ornithine decarboxylase by various ribosomal proteins: detection of a new ribosomal protein possessing strong antizyme activity. Biochim Biophys Acta 911:180-190
Wada A., Sako T. (1987) Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli. J Biochem (Tokyo) 101:817-820
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpmJ
0 aa cleaved
EG11232
Wada A., Sako T. (1987) Primary structures of and genes for new ribosomal proteins A and B in Escherichia coli. J Biochem (Tokyo) 101:817-820
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpoA
0 aa cleaved
EG10893
Fujiki H., Zurek G. (1975) The subunits of DNA-dependent RNA polymerase from E. coli: I. Amino acid analysis and primary structure of the N-terminal regions. FEBS Lett 55:242-244
Post L.E., Nomura M. (1979) Nucleotide sequence of the intercistronic region preceding the gene for RNA polymerase subunit alpha in Escherichia coli. J Biol Chem 254:10604-10606
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rpoB
0 aa cleaved
EG10894
Fujiki H., Zurek G. (1975) The subunits of DNA-dependent RNA polymerase from E. coli: I. Amino acid analysis and primary structure of the N-terminal regions. FEBS Lett 55:242-244
Ovchinnikov Y.A., Monastyrskaya G.S., Gubanov V.V., Guryev S.O., Chertov O., Modyanov N.N., Grinkevich V.A., Makarova I.A., Marchenko T.V., Polovnikova I.N., Lipkin V.M., Sverdlov E.D. (1981) The primary structure of Escherichia coli RNA polymerase. Nucleotide sequence of the rpoB gene and amino-acid sequence of the beta-subunit. Eur J Biochem 116:621-629
rpoC
0 aa cleaved
EG10895
Fujiki H., Zurek G. (1975) The subunits of DNA-dependent RNA polymerase from E. coli: I. Amino acid analysis and primary structure of the N-terminal regions. FEBS Lett 55:242-244
Ovchinnikov Y.A., Monastyrskaya G.S., Gubanov V.V., Guryev S.O., Chertov O., Modyanov N.N., Grinkevich V.A., Makarova I.A., Marchenko T.V., Polovnikova I.N., Lipkin V.M., Sverdlov E.D. (1981) The primary structure of Escherichia coli RNA polymerase. Nucleotide sequence of the rpoB gene and amino-acid sequence of the beta-subunit. Eur J Biochem 116:621-629
Ovchinnikov Yu A., Monastyrskaya G.S., Gubanov V.V., Guryev S.O., Salomatina I.S., Shuvaeva T.M., Lipkin V.M., Sverdlov E.D. (1982) The primary structure of E. coli RNA polymerase, Nucleotide sequence of the rpoC gene and amino acid sequence of the beta'-subunit. Nucleic Acids Res 10:4035-4044
rpoD
0 aa cleaved
EG10896
Fujiki H., Zurek G. (1975) The subunits of DNA-dependent RNA polymerase from E. coli: I. Amino acid analysis and primary structure of the N-terminal regions. FEBS Lett 55:242-244
rpoZ
1 aa cleaved
EG10899
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
rpsA
0 aa cleaved
EG10900
Schnier J., Kimura M., Foulaki K., Subramanian A.R., Isono K., Wittmann-Liebold B. (1982) Primary structure of Escherichia coli ribosomal protein S1 and of its gene rpsA. Proc Natl Acad Sci U S A 79:1008-1011
Freestone P., Grant S., Toth I., Norris V. (1995) Identification of phosphoproteins in Escherichia coli. Mol Microbiol 15:573-580
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Karzai A.W., Sauer R.T. (2001) Protein factors associated with the SsrA.SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci U S A 98:3040-4
rpsB
1 aa cleaved
EG10901
Wittmann-Liebold B., Bosserhoff A. (1981) Primary structure of protein S2 from the Escherichia coli ribosome. FEBS Lett 129:10-16
Ueshima R., Fujita N., Ishihama A. (1992) Identification of Escherichia coli proteins cross-reacting with antibodies against region 2.2 peptide of RNA polymerase sigma subunit. Biochem Biophys Res Commun 184:634-639
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpsC
1 aa cleaved
EG10902
Brauer D., Roming R. (1979) The primary structure of protein S3 from the small ribosomal subunit of Escherichia coli. FEBS Lett 106:352-357
rpsD
1 aa cleaved
EG10903
Reinbolt J., Schiltz E. (1973) The primary structure of ribosomal protein S4 from Escherichia coli. FEBS Lett 36:250-252
Schiltz E., Reinbolt J. (1975) Determination of the complete amino-acid sequence of protein S4 from Escherichia coli ribosomes. Eur J Biochem 56:467-481
rpsE
1 aa cleaved
EG10904
Wittmann-Liebold B., Greuer B. (1978) The primary structure of protein S5 from the small subunit of the Escherichia coli ribosome. FEBS Lett 95:91-98
rpsF
0 aa cleaved
EG10905
Hitz H., Schafer D., Wittmann-Liebold B. (1977) Determination of the complete amino-acid sequence of protein S6 from the wild-type and a mutant of Escherichia coli. Eur J Biochem 75:497-512
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
rpsG
1 aa cleaved
EG10906
Reinbolt J., Tritsch D., Wittmann-Liebold B. (1979) The primary structure of ribosomal protein S7 from E. coli strains K and B. Biochimie 61:501-522
rpsH
1 aa cleaved
EG10907
Allen G., Wittmann-Liebold B. (1978) The amino acid sequence of the ribosomal protein S8 of Escherichia coli. Hoppe Seylers Z Physiol Chem 359:1509-1525
rpsI
1 aa cleaved
EG10908
Chen R., Wittmann-Liebold B. (1975) The primary structure of protein S9 from the 30S subunit of Escherichia coli ribosomes. FEBS Lett 52:139-140
rpsJ
0 aa cleaved
EG10909
Yaguchi M., Roy C., Wittmann H.G. (1980) The primary structure of protein S10 from the small ribosomal subunit of Escherichia coli. FEBS Lett 121:113-116
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rpsK
1 aa cleaved
EG10910
Kamp R., Wittmann-Liebold B. (1980) Primary structure of protein S11 from Escherichia coli ribosomes. FEBS Lett 121:117-122
rpsL
1 aa cleaved
EG10911
Funatsu G., Yaguchi M., Wittmann-Liebold B. (1977) Primary stucture of protein S12 from the small Escherichia coli ribosomal subunit. FEBS Lett 73:12-17
rpsM
1 aa cleaved
EG10912
Lindemann H., Wittmann-Liebold B. (1977) Primary structure of protein S13 from the small subunit of Escherichia coli ribosomes. Hoppe Seylers Z Physiol Chem 358:843-863
rpsN
1 aa cleaved
EG10913
Cerretti D.P., Dean D., Davis G.R., Bedwell D.M., Nomura M. (1983) The spc ribosomal protein operon of Escherichia coli: sequence and cotranscription of the ribosomal protein genes and a protein export gene. Nucleic Acids Res 11:2599-2616
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpsO
1 aa cleaved
EG10914
Morinaga T., Funatsu G., Funatsu M., Wittman H.G. (1976) Primary structure of the 16S rRNA binding protein S15 from Escherichia coli ribosomes. FEBS Lett 64:307-309
rpsP
0 aa cleaved
EG10915
Vandekerckhove J., Rombauts W., Wittmann-Liebold B. (1977) The complete amino acid sequence of protein S16 from Escherichia coli. Hoppe Seylers Z Physiol Chem 358:989-1002
Oberto J., Bonnefoy E., Mouray E., Pellegrini O., Wikstrom P.M., Rouviere-Yaniv J. (1996) The Escherichia coli ribosomal protein S16 is an endonuclease. Mol Microbiol 19:1319-1330
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
rpsQ
1 aa cleaved
EG10916
Yaguchi M., Wittmann H.G. (1978) The primary structure of protein S17 from the small ribosomal subunit of Escherichia coli. FEBS Lett 87:37-40
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Hoving S., Munchbach M., Schmid H., Signor L., Lehmann A., Staudenmann W., Quadroni M., James P. (2000) A method for the chemical generation of N-terminal peptide sequence tags for rapid protein identification. Anal Chem 72:1006-1014
rpsR
1 aa cleaved
EG10917
Yaguchi M. (1975) Primary structure of protein S18 from the small Escherichia coli ribosomal subunit. FEBS Lett 59:217-220
rpsS
1 aa cleaved
EG10918
Yaguchi M., Wittmann H.G. (1978) Primary structure of protein S19 from the small ribosomal subunit of Escherichia coli. FEBS Lett 88:227-230
rpsT
1 aa cleaved
EG10919
Wittmann-Liebold B., Marzinzig E., Lehmann A. (1976) Primary structure of protein S20 from the small ribosomal subunit of Escherichia coli. FEBS Lett 68:110-114
rpsU
1 aa cleaved
EG10920
Vandekerckhove J., Rombauts W., Peeters B., Wittmann-Liebold B. (1975) Determination of the complete amino acid sequence of protein S21 from Escherichia coli ribosomes. Hoppe Seylers Z Physiol Chem 356:1955-1976
rsd
0 aa cleaved
EG11738
Jishage M., Ishihama A. (1998) A stationary phase protein in Escherichia coli with binding activity to the major sigma subunit of RNA polymerase. Proc Natl Acad Sci U S A 95:4953-4958
rsmB
0 aa cleaved
EG12163
Tscherne J.S., Nurse K., Popienick P., Michel H., Sochacki M., Ofengand J. (1999) Purification, cloning, and characterization of the 16S RNA m5C967 methyltransferase from Escherichia coli. Biochemistry 38:1884-1892
rsmC
1 aa cleaved
EG12596
Tscherne J.S., Nurse K., Popienick P., Ofengand J. (1999) Purification, cloning, and characterization of the 16 S RNA m2G1207 methyltransferase from Escherichia coli. J Biol Chem 274:924-929
rsuA
0 aa cleaved
EG12044
Wrzesinski J., Bakin A., Nurse K., Lane B.G., Ofengand J. (1995) Purification, cloning, and properties of the 16S RNA pseudouridine 516 synthase from Escherichia coli. Biochemistry 34:8904-8913
rusA
0 aa cleaved
EG20283
Sharples G.J., Chan S.N., Mahdi A.A., Whitby M.C., Lloyd R.G. (1994) Processing of intermediates in recombination and DNA repair: identification of a new endonuclease that specifically cleaves Holliday junctions. EMBO J 13:6133-6142
ruvC
1 aa cleaved
EG10925
Iwasaki H., Takahagi M., Shiba T., Nakata A., Shinagawa H. (1991) Escherichia coli RuvC protein is an endonuclease that resolves the Holliday structure. EMBO J 10:4381-4389
Dunderdale H.J., Benson F.E., Parsons C.A., Sharples G.J., Lloyd R.G., West S.C. (1991) Formation and resolution of recombination intermediates by E. coli RecA and RuvC proteins. Nature 354:506-510
sbcB
0 aa cleaved
EG10926
Phillips G.J., Kushner S.R. (1987) Determination of the nucleotide sequence for the exonuclease I structural gene (sbcB) of Escherichia coli K12. J Biol Chem 262:455-459
sbcC
0 aa cleaved
EG10927
Connelly J.C., de Leau E.S., Okely E.A., Leach D.R. (1997) Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli. J Biol Chem 272:19819-26
sbcD
0 aa cleaved
EG11094
Connelly J.C., de Leau E.S., Okely E.A., Leach D.R. (1997) Overexpression, purification, and characterization of the SbcCD protein from Escherichia coli. J Biol Chem 272:19819-26
sbmC
0 aa cleaved
EG11892
Nakanishi A., Oshida T., Matsushita T., Imajoh-Ohmi S., Ohnuki T. (1998) Identification of DNA gyrase inhibitor (GyrI) in Escherichia coli. J Biol Chem 273:1933-1938
sbp
19 aa cleaved
EG10929
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sdaA
0 aa cleaved
EG10930
Su H., Moniakis J., Newman E.B. (1993) Use of gene fusions of the structural gene sdaA to purify L-serine deaminase 1 from Escherichia coli K-12. Eur J Biochem 211:521-527
sdhA
0 aa cleaved
EG10931
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
sdhB
0 aa cleaved
EG10932
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
secA
0 aa cleaved
EG10936
Schmidt M.G., Rollo E.E., Grodberg J., Oliver D.B. (1988) Nucleotide sequence of the secA gene and secA(Ts) mutations preventing protein export in Escherichia coli. J Bacteriol 170:3404-3414
secB
2 aa cleaved
EG10937
Kumamoto C.A., Chen L., Fandl J., Tai P.C. (1989) Purification of the Escherichia coli secB gene product and demonstration of its activity in an in vitro protein translocation system. J Biol Chem 264:2242-9
selB
0 aa cleaved
EG10942
Forchhammer K., Rucknagel K.P., Bock A. (1990) Purification and biochemical characterization of SELB, a translation factor involved in selenoprotein synthesis. J Biol Chem 265:9346-9350
seqA
0 aa cleaved
EG12197
Slater S., Wold S., Lu M., Boye E., Skarstad K., Kleckner N. (1995) E. coli SeqA protein binds oriC in two different methyl-modulated reactions appropriate to its roles in DNA replication initiation and origin sequestration. Cell 82:927-936
serA
1 aa cleaved
EG10944
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
serC
1 aa cleaved
EG10946
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
skp
20 aa cleaved
EG10455
Holck A., Kleppe K. (1988) Cloning and sequencing of the gene for the DNA-binding 17K protein of Escherichia coli. Gene 67:117-124
Thome B.M., Hoffschulte H.K., Schiltz E., Muller M. (1990) A protein with sequence identity to Skp (FirA) supports protein translocation into plasma membrane vesicles of Escherichia coli. FEBS Lett 269:113-116
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
slt
27 aa cleaved
EG10950
Engel H., Kazemier B., Keck W. (1991) Murein-metabolizing enzymes from Escherichia coli: sequence analysis and controlled overexpression of the slt gene, which encodes the soluble lytic transglycosylase. J Bacteriol 173:6773-6782
slyD
0 aa cleaved
EG11663
Wulfing C., Lombardero J., Pluckthun A. (1994) An Escherichia coli protein consisting of a domain homologous to FK506-binding proteins (FKBP) and a new metal binding motif. J Biol Chem 269:2895-2901
Hottenrott S., Schumann T., Pluckthun A., Fischer G., Rahfeld J.U. (1997) The Escherichia coli SlyD is a metal ion-regulated peptidyl-prolyl cis/trans-isomerase. J Biol Chem 272:15697-15701
smpB
1 aa cleaved
EG11782
Miczak A., Chauhan A.K., Apirion D. (1991) Two new genes located between 2758 and 2761 kilobase pairs on the Escherichia coli genome. J Bacteriol 173:3271-3272
Karzai A.W., Susskind M.M., Sauer R.T. (1999) SmpB, a unique RNA-binding protein essential for the peptide-tagging activity of SsrA (tmRNA). EMBO J 18:3793-3799
sodA
1 aa cleaved
EG10953
Steinman H.M. (1978) The amino acid sequence of mangano superoxide dismutase from Escherichia coli B. J Biol Chem 253:8708-8720
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sodB
1 aa cleaved
EG10954
Steinman H.M., Hill R.L. (1973) Sequence homologies among bacterial and mitochondrial superoxide dismutases. Proc Natl Acad Sci U S A 70:3725-3729
Schinina M.E., Maffey L., Barra D., Bossa F., Puget K., Michelson A.M. (1987) The primary structure of iron superoxide dismutase from Escherichia coli. FEBS Lett 221:87-90
Carlioz A., Ludwig M.L., Stallings W.C., Fee J.A., Steinman H.M., Touati D. (1988) Iron superoxide dismutase. Nucleotide sequence of the gene from Escherichia coli K12 and correlations with crystal structures. J Biol Chem 263:1555-1562
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
sodC
19 aa cleaved
EG13419
Imlay K.R., Imlay J.A. (1996) Cloning and analysis of sodC, encoding the copper-zinc superoxide dismutase of Escherichia coli. J Bacteriol 178:2564-2571
soxS
1 aa cleaved
EG10958
Li Z., Demple B. (1994) SoxS, an activator of superoxide stress genes in Escherichia coli. Purification and interaction with DNA. J Biol Chem 269:18371-18377
speD
0 aa cleaved
EG10962
Anton D.L., Kutny R. (1987) Escherichia coli S-adenosylmethionine decarboxylase. Subunit structure, reductive amination, and NH2-terminal sequences. J Biol Chem 262:2817-2822
speE
1 aa cleaved
EG10963
Tabor C.W., Tabor H., Xie Q.W. (1986) Spermidine synthase of Escherichia coli: localization of the speE gene. Proc Natl Acad Sci U S A 83:6040-6044
speG
1 aa cleaved
EG12447
Fukuchi J., Kashiwagi K., Takio K., Igarashi K. (1994) Properties and structure of spermidine acetyltransferase in Escherichia coli. J Biol Chem 269:22581-22585
spy
23 aa cleaved
EG13490
Hagenmaier S., Stierhof Y.D., Henning U. (1997) A new periplasmic protein of Escherichia coli which is synthesized in spheroplasts but not in intact cells. J Bacteriol 179:2073-2076
Noll M., Petrukhin K., Lutsenko S. (1998) Identification of a novel transcription regulator from Proteus mirabilis, PMTR, revealed a possible role of YJAI protein in balancing zinc in Escherichia coli. J Biol Chem 273:21393-21401
Garbe T.R., Kobayashi M., Yukawa H. (2000) Indole-inducible proteins in bacteria suggest membrane and oxidant toxicity. Arch Microbiol 173:78-82
sra
0 aa cleaved
EG11508
Izutsu K., Wada C., Komine Y., Sako T., Ueguchi C., Nakura S., Wada A. (2001) Escherichia coli ribosome-associated protein SRA, whose copy number increases during stationary phase. J Bacteriol 183:2765-73
srlD
0 aa cleaved
EG10971
Novotny M.J., Reizer J., Esch F., Saier M.H., Jr. (1984) Purification and properties of D-mannitol-1-phosphate dehydrogenase and D-glucitol-6-phosphate dehydrogenase from Escherichia coli. J Bacteriol 159:986-990
ssb
1 aa cleaved
EG10976
Sancar A., Williams K.R., Chase J.W., Rupp W.D. (1981) Sequences of the ssb gene and protein. Proc Natl Acad Sci U S A 78:4274-4278
Beyreuther K., Berthold-Schmidt V., Geider K. (1982) Biological activity and a partial amino-acid sequence of Escherichia coli DNA-binding protein I isolated from overproducing cells. Eur J Biochem 123:415-420
sseA
1 aa cleaved
EG11600
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ssnA
0 aa cleaved
EG13062
Yamada M., Talukder A.A., Nitta T. (1999) Characterization of the ssnA gene, which is involved in the decline of cell viability at the beginning of stationary phase in Escherichia coli. J Bacteriol 181:1838-1846
sspA
1 aa cleaved
EG10977
Fukuda R., Yano R., Fukui T., Hase T., Ishihama A., Matsubara H. (1985) Cloning of the Escherichia coli gene for the stringent starvation protein. Mol Gen Genet 201:151-157
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sspB
0 aa cleaved
EG10978
Levchenko I., Seidel M., Sauer R.T., Baker T.A. (2000) A specificity-enhancing factor for the ClpXP degradation machine. Science 289:2354-2356
ssuD
1 aa cleaved
EG13706
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
ssuE
0 aa cleaved
EG13708
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
sthA
1 aa cleaved
EG11428
Boonstra B., French C.E., Wainwright I., Bruce N.C. (1999) The udhA gene of Escherichia coli encodes a soluble pyridine nucleotide transhydrogenase. J Bacteriol 181:1030-1034
sucB
1 aa cleaved
EG10980
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sucC
0 aa cleaved
EG10981
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sucD
1 aa cleaved
EG10982
Freestone P., Grant S., Toth I., Norris V. (1995) Identification of phosphoproteins in Escherichia coli. Mol Microbiol 15:573-580
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
sufI
27 aa cleaved
EG11376
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
surA
0 aa cleaved
EG10985
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
syd
0 aa cleaved
EG12959
Shimoike T., Taura T., Kihara A., Yoshihisa T., Akiyama Y., Cannon K., Ito K. (1995) Product of a new gene, syd, functionally interacts with SecY when overproduced in Escherichia coli. J Biol Chem 270:5519-5526
tag
0 aa cleaved
EG10986
Sakumi K., Nakabeppu Y., Yamamoto Y., Kawabata S., Iwanaga S., Sekiguchi M. (1986) Purification and structure of 3-methyladenine-DNA glycosylase I of Escherichia coli. J Biol Chem 261:15761-15766
talB
1 aa cleaved
EG11556
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
tam
1 aa cleaved
EG13812
Cai H., Clarke S. (1999) A novel methyltransferase catalyzes the methyl esterification of trans-aconitate in Escherichia coli. J Biol Chem 274:13470-13479
tatD
0 aa cleaved
EG11481
Wexler M., Sargent F., Jack R.L., Stanley N.R., Bogsch E.G., Robinson C., Berks B.C., Palmer T. (2000) TatD is a cytoplasmic protein with DNase activity. No requirement for TatD family proteins in sec-independent protein export. J Biol Chem 275:16717-16722
tauA
22 aa cleaved
EG13300
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
tauD
1 aa cleaved
EG12423
Quadroni M., Staudenmann W., Kertesz M., James P. (1996) Analysis of global responses by protein and peptide fingerprinting of proteins isolated by two-dimensional gel electrophoresis. Application to the sulfate-starvation response of Escherichia coli. Eur J Biochem 239:773-781
tbpA
18 aa cleaved
EG11574
Hollenbach A.D., Dickson K.A., Washabaugh M.W., unpublished in P31550
tdcB
0 aa cleaved
EG10990
Kim S.S., Datta P. (1982) Chemical characterization of biodegradative threonine dehydratases from two enteric bacteria. Biochim Biophys Acta 706:27-35
tdh
0 aa cleaved
EG10993
Aronson B.D., Somerville R.L., Epperly B.R., Dekker E.E. (1989) The primary structure of Escherichia coli L-threonine dehydrogenase. J Biol Chem 264:5226-5232
tesA
26 aa cleaved
EG11542
Karasawa K., Kudo I., Kobayashi T., Homma H., Chiba N., Mizushima H., Inoue K., Nojima S. (1991) Lysophospholipase L1 from Escherichia coli K-12 overproducer. J Biochem (Tokyo) 109:288-293
Ichihara S., Matsubara Y., Kato C., Akasaka K., Mizushima S. (1993) Molecular cloning, sequencing, and mapping of the gene encoding protease I and characterization of proteinase and proteinase-defective Escherichia coli mutants. J Bacteriol 175:1032-1037
Cho H., Cronan J.E., Jr. (1993) Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme. J Biol Chem 268:9238-9245
tesB
1 aa cleaved
EG10995
Naggert J., Narasimhan M.L., DeVeaux L., Cho H., Randhawa Z.I., Cronan J.E., Jr., Green B.N., Smith S. (1991) Cloning, sequencing, and characterization of Escherichia coli thioesterase II. J Biol Chem 266:11044-11050
tgt
0 aa cleaved
EG10996
Garcia G.A., Koch K.A., Chong S. (1993) tRNA-guanine transglycosylase from Escherichia coli. Overexpression, purification and quaternary structure. J Mol Biol 231:489-497
thrA
0 aa cleaved
EG10998
Falcoz-Kelly F., Janin J., Saari J.C., Veron M., Truffa-Bachi P., Cohen G.N. (1972) Revised structure of aspartokinase I-homoserine dehydrogenase I of Escherichia coli K12. Evidence for four identical subunits. Eur J Biochem 28:507-519
Cossart-Gheerbrant P., Sibilli-Weill L., Briley P.A., Chalvignac M.A., Le Bras G., Cohen G.N. (1978) The primary structure of Escherichia coli K12 aspartokinase I- homoserine dehydrogenase I-Isolation and characterisation of the peptides produced by cyanogen bromide. Biochim Biophys Acta 535:206-215
thrC
0 aa cleaved
EG11000
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
thyA
0 aa cleaved
EG11002
Belfort M., Maley G., Pedersen-Lane J., Maley F. (1983) Primary structure of the Escherichia coli thyA gene and its thymidylate synthase product. Proc Natl Acad Sci U S A 80:4914-4918
tig
0 aa cleaved
EG11003
Crooke E., Guthrie B., Lecker S., Lill R., Wickner W. (1988) ProOmpA is stabilized for membrane translocation by either purified E. coli trigger factor or canine signal recognition particle. Cell 54:1003-1011
Guthrie B., Wickner W. (1990) Trigger factor depletion or overproduction causes defective cell division but does not block protein export. J Bacteriol 172:5555-5562
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
tktA
0 aa cleaved
EG11427
Sprenger G.A. (1992) Location of the transketolase (tkt) gene on the Escherichia coli physical map. J Bacteriol 174:1707-1708
tnaA
0 aa cleaved
EG11005
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Rompf A., Schmid R., Jahn D. (1998) Changes in protein synthesis as a consequence of heme depletion in Escherichia coli. Curr Microbiol 37:226-230
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
tolB
21 aa cleaved
EG11008
Isnard M., Rigal A., Lazzaroni J.C., Lazdunski C., Lloubes R. (1994) Maturation and localization of the TolB protein required for colicin import. J Bacteriol 176:6392-6396
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
tolC
24 aa cleaved
EG11009
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Molloy M.P., Herbert B.R., Walsh B.J., Tyler M.I., Traini M., Sanchez J.C., Hochstrasser D.F., Williams K.L., Gooley A.A. (1998) Extraction of membrane proteins by differential solubilization for separation using two-dimensional gel electrophoresis. Electrophoresis 19:837-844
tolQ
0 aa cleaved
EG11010
Vianney A., Lewin T.M., Beyer W.F., Jr., Lazzaroni J.C., Portalier R., Webster R.E. (1994) Membrane topology and mutational analysis of the TolQ protein of Escherichia coli required for the uptake of macromolecules and cell envelope integrity. J Bacteriol 176:822-829
topA
1 aa cleaved
EG11013
Tse-Dinh Y.C., Wang J.C. (1986) Complete nucleotide sequence of topA the gene encoding Escherichia coli DNA topoisomerase I. J Mol Biol 191:321-331
topB
0 aa cleaved
EG11014
DiGate R.J., Marians K.J. (1989) Molecular cloning and DNA sequence analysis of Escherichia coli topB, the gene encoding topoisomerase III. J Biol Chem 264:17924-17930
torA
39 aa cleaved
EG11814
Mejean V., Iobbi-Nivol C., Lepelletier M., Giordano G., Chippaux M., Pascal M.C. (1994) TMAO anaerobic respiration in Escherichia coli: involvement of the tor operon. Mol Microbiol 11:1169-1179
torR
0 aa cleaved
EG12615
Simon G., Mejean V., Jourlin C., Chippaux M., Pascal M.C. (1994) The torR gene of Escherichia coli encodes a response regulator protein involved in the expression of the trimethylamine N-oxide reductase genes. J Bacteriol 176:5601-5606
torT
18 aa cleaved
EG12616
Jourlin C., Simon G., Pommier J., Chippaux M., Mejean V. (1996) The periplasmic TorT protein is required for trimethylamine N-oxide reductase gene induction in Escherichia coli. J Bacteriol 178:1219-1223
tpiA
0 aa cleaved
EG11015
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
tpx
1 aa cleaved
EG12672
Cha M.K., Kim H.K., Kim I.H. (1995) Thioredoxin-linked "thiol peroxidase" from periplasmic space of Escherichia coli. J Biol Chem 270:28635-28641
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
treA
30 aa cleaved
EG11017
Gutierrez C., Ardourel M., Bremer E., Middendorf A., Boos W., Ehmann U. (1989) Analysis and DNA sequence of the osmoregulated treA gene encoding the periplasmic trehalase of Escherichia coli K12. Mol Gen Genet 217:347-354
treF
0 aa cleaved
EG12245
Horlacher R., Uhland K., Klein W., Ehrmann M., Boos W. (1996) Characterization of a cytoplasmic trehalase of Escherichia coli. J Bacteriol 178:6250-6257
trkA
0 aa cleaved
EG11019
Schlosser A., Hamann A., Bossemeyer D., Schneider E., Bakker E.P. (1993) NAD+ binding to the Escherichia coli K(+)-uptake protein TrkA and sequence similarity between TrkA and domains of a family of dehydrogenases suggest a role for NAD+ in bacterial transport. Mol Microbiol 9:533-543
trmA
0 aa cleaved
EG11022
Ny T., Lindstrom H.R., Hagervall T.G., Bjork G.R. (1988) Purification of transfer RNA (m5U54)-methyltransferase from Escherichia coli. Association with RNA. Eur J Biochem 177:467-475
trmD
0 aa cleaved
EG11023
Hjalmarsson K.J., Bystrom A.S., Bjork G.R. (1983) Purification and characterization of transfer RNA (guanine-1)methyltransferase from Escherichia coli. J Biol Chem 258:1343-1351
trpA
0 aa cleaved
EG11024
Guest J.R., Drapeau G.R., Carlton B.C., Yanofsky C. (1967) The amino acid sequence of the A protein (alpha subunit) of the tryptophan synthetase of Escherichia coli. J Biol Chem 242:5442-5446
Nichols B.P., Yanofsky C. (1979) Nucleotide sequences of trpA of Salmonella typhimurium and Escherichia coli: an evolutionary comparison. Proc Natl Acad Sci U S A 76:5244-5248
Sugino Y., Tsunasawa S., Yutani K., Ogasahara K., Suzuki M. (1980) Amino-terminally formylated tryptophan synthase alpha-subunit produced by the trp operon cloned in a plasmid vector. J Biochem (Tokyo) 87:351-354
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
trpB
1 aa cleaved
EG11025
Crawford I.P., Decastel M., Goldberg M.E. (1978) Assignment of the ends of the beta-chain of E. coli tryptophan synthase to the F1 and F2 domains. Biochem Biophys Res Commun 85:309-316
Higgins W., Miles E.W., Fairwell T. (1980) Location of three active site residues in the NH2-terminal sequence of the beta 2 subunit tryptophan synthase from Escherichia coli. J Biol Chem 255:512-517
Ahmed S.A., Fairwell T., Dunn S., Kirschner K., Miles E.W. (1986) Identification of three sites of proteolytic cleavage in the hinge region between the two domains of the beta 2 subunit of tryptophan synthase of Escherichia coli or Salmonella typhimurium. Biochemistry 25:3118-3124
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
trpD
1 aa cleaved
EG11027
Li S.L., Hanlon J., Yanofsky C. (1974) Structural homology of the glutamine amidotransferase subunits of the anthranilate synthetases of Escherichia coli, Salmonella typhimurium and Serratia marcescens. Nature 248:48-50
trpE
0 aa cleaved
EG11028
Li S.L., Hanlon J., Yanofsky C. (1974) Separation of anthranilate synthetase components I and II of Escherichia coli, Salmonella typhimurium, and Serratia marcescens and determination of their amino-terminal sequences by automatic Edman degradation. Biochemistry 13:1736-1744
trpR
1 aa cleaved
EG11029
Gunsalus R.P., Yanofsky C. (1980) Nucleotide sequence and expression of Escherichia coli trpR, the structural gene for the trp aporepressor. Proc Natl Acad Sci U S A 77:7117-7121
Joachimiak A., Kelley R.L., Gunsalus R.P., Yanofsky C., Sigler P.B. (1983) Purification and characterization of trp aporepressor. Proc Natl Acad Sci U S A 80:668-672
Tsapakos M.J., Haydock P.V., Hermodson M.,Somerville R.L. (1985) Ligand-mediated conformational changes in Trp repressor protein of Escherichia coli probed through limited proteolysis and the use of specific antibodies. J Biol Chem 260:16383-16394
trpS
1 aa cleaved
EG11030
Winter G.P., Hartley B.S., McLachlan A.D., Lee M., Muench K.H. (1977) Sequence homologies between the tryptophanyl tRNA synthetases of Bacillus stearothermophilus and Escherichia coli. FEBS Lett 82:348-35
truA
1 aa cleaved
EG10454
Kammen H.O., Marvel C.C., Hardy L., Penhoet E.E. (1988) Purification, structure, and properties of Escherichia coli tRNA pseudouridine synthase I. J Biol Chem 263:2255-2263
truB
1 aa cleaved
EG11177
Nurse K., Wrzesinski J., Bakin A., Lane B.G., Ofengand J. (1995) Purification, cloning, and properties of the tRNA psi 55 synthase from Escherichia coli. RNA 1:102-112
truD
0 aa cleaved
EG13109
Kaya Y., Ofengand J. (2003) A novel unanticipated type of pseudouridine synthase with homologs in bacteria, archaea, and eukarya. RNA 9:711-721
trxA
1 aa cleaved
EG11031
Holmgren A. (1968) Thioredoxin. 6. The amino acid sequence of the protein from Escherichia coli B. Eur J Biochem 6:475-484
trxB
1 aa cleaved
EG11032
Russel M., Model P. (1988) Sequence of thioredoxin reductase from Escherichia coli. Relationship to other flavoprotein disulfide oxidoreductases. J Biol Chem 263:9015-9019
Ueshima R., Fujita N., Ishihama A. (1992) Identification of Escherichia coli proteins cross-reacting with antibodies against region 2.2 peptide of RNA polymerase sigma subunit. Biochem Biophys Res Commun 184:634-639
tsf
1 aa cleaved
EG11033
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
tufA
1 aa cleaved
EG11036
Jones M.D., Petersen T.E., Nielsen K.M., Magnusson S., Sottrup-Jensen L., Gausing K., Clark B.F. (1980) The complete amino-acid sequence of elongation factor Tu from Escherichia coli. Eur J Biochem 108:507-526
Laursen R.A., L'Italien J.J., Nagarkatti S., Miller D.L. (1981) The amino acid sequence of elongation factor Tu of Escherichia coli. The complete sequence. J Biol Chem 256:8102-8109
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
tufB
1 aa cleaved
EG11037
Jones M.D., Petersen T.E., Nielsen K.M., Magnusson S., Sottrup-Jensen L., Gausing K., Clark B.F. (1980) The complete amino-acid sequence of elongation factor Tu from Escherichia coli. Eur J Biochem 108:507-526
Laursen R.A., L'Italien J.J., Nagarkatti S., Miller D.L. (1981) The amino acid sequence of elongation factor Tu of Escherichia coli. The complete sequence. J Biol Chem 256:8102-8109
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
tus
1 aa cleaved
EG11038
Hidaka M., Kobayashi T., Takenaka S., Takeya H., Horiuchi T. (1989) Purification of a DNA replication terminus (ter) site-binding protein in Escherichia coli and identification of the structural gene. J Biol Chem 264:21031-21037
tynA
30 aa cleaved
EG13140
Yamashita M., Azakami H., Yokoro N., Roh J.H., Suzuki H., Kumagai H., Murooka Y. (1996) maoB, a gene that encodes a positive regulator of the monoamine oxidase gene (maoA) in Escherichia coli. J Bacteriol 178:2941-2947
Hanlon S.P., Hill T.K., Flavell M.A., Stringfellow J.M., Cooper R.A. (1997) 2-phenylethylamine catabolism by Escherichia coli K-12: gene organization and expression. Microbiology 143:513-518
typA
0 aa cleaved
EG11837
Freestone P., Grant S., Toth I., Norris V. (1995) Identification of phosphoproteins in Escherichia coli. Mol Microbiol 15:573-580
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
tyrB
0 aa cleaved
EG11040
Kuramitsu S., Inoue K., Ogawa T., Ogawa H., Kagamiyama H. (1985) Aromatic amino acid aminotransferase of Escherichia coli: nucleotide sequence of the tyrB gene. BiochemBiophysResCommun 133:134-139
Hayashi H., Inoue K., Nagata T., Kuramitsu S., Kagamiyama H. (1993) Escherichia coli aromatic amino acid aminotransferase: characterization and comparison with aspartate aminotransferase. Biochemistry 32:12229-39
tyrR
0 aa cleaved
EG11042
Cui J., Somerville R.L. (1993) The TyrR protein of Escherichia coli, analysis by limited proteolysis of domain structure and ligand-mediated conformational changes. J Biol Chem 268:5040-5047
tyrS
1 aa cleaved
EG11043
Barker D.G., Bruton C.J., Winter G. (1982) The tyrosyl-tRNA synthetase from Escherichia coli. Complete nucleotide sequence of the structural gene. FEBS Lett 150:419-423
ubiC
1 aa cleaved
EG11369
Nichols B.P., Green J.M. (1992) Cloning and sequencing of Escherichia coli ubiC and purification of chorismate lyase. J Bacteriol 174:5309-5316
udp
1 aa cleaved
EG11045
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
ugpB
23 aa cleaved
EG11047
Overduin P., Boos W., Tommassen J. (1988) Nucleotide sequence of the ugp genes of Escherichia coli K-12: homology to the maltose system. Mol Microbiol 2:767-775
uhpA
0 aa cleaved
EG11051
Dahl J.L., Wei B.Y., Kadner R.J. (1997) Protein phosphorylation affects binding of the Escherichia coli transcription activator UhpA to the uhpT promoter. J Biol Chem 272:1910-1919
uidB
0 aa cleaved
EG11658
Liang W.J., Wilson K.J., Xie H., Knol J., Suzuki S., Rutherford N.G., Henderson P.J., Jefferson R.A (2005) The gusBC genes of Escherichia coli encode a glucuronide transport system. J Bacteriol 187:2377-2385
uidC
23 aa cleaved
EG12668
Liang W.J., Wilson K.J., Xie H., Knol J., Suzuki S., Rutherford N.G., Henderson P.J., Jefferson R.A (2005) The gusBC genes of Escherichia coli encode a glucuronide transport system. J Bacteriol 187:2377-2385
ulaD
0 aa cleaved
EG12496
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
ung
1 aa cleaved
EG11058
Varshney U., Hutcheon T., van de Sande J.H. (1988) Sequence analysis, expression, and conservation of Escherichia coli uracil DNA glycosylase and its gene (ung). J Biol Chem 263:7776-7784
upp
0 aa cleaved
EG11332
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
usg
0 aa cleaved
EG11059
Schoenlein P.V., Roa B.B., Winkler M.E. (1989) Divergent transcription of pdxB and homology between the pdxB and serA gene products in Escherichia coli K-12. J Bacteriol 171:6084-6092
ushA
25 aa cleaved
EG11060
Burns D.M., Beacham I.R. (1986) Nucleotide sequence and transcriptional analysis of the E. coli ushA gene, encoding periplasmic UDP-sugar hydrolase (5'-nucleotidase): regulation of the ushA gene, and the signal sequence of its encoded protein product. Nucleic Acids Res 14:4325-4342
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
uspA
1 aa cleaved
EG11390
Nystrom T., Neidhardt F.C. (1992) Cloning, mapping and nucleotide sequencing of a gene encoding a universal stress protein in Escherichia coli. Mol Microbiol 6:3187-3198
Henzel W.J., Billeci T.M., Stults J.T., Wong S.C., Grimley C., Watanabe C. (1993) Identifying proteins from two-dimensional gels by molecular mass searching of peptide fragments in protein sequence databases. Proc Natl Acad Sci U S A 90:5011-5015
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Freestone P., Nystrom T., Trinei M., Norris V. (1997) The universal stress protein, UspA, of Escherichia coli is phosphorylated in response to stasis. J Mol Biol 274:318-324
uspE
1 aa cleaved
EG11246
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
uspF
0 aa cleaved
EG12674
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
uspG
0 aa cleaved
EG12683
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
uvrA
0 aa cleaved
EG11061
Husain I., Van Houten B., Thomas D.C., Sancar A. (1986) Sequences of Escherichia coli uvrA gene and protein reveal two potential ATP binding sites. J Biol Chem 261:4895-4901
uvrB
1 aa cleaved
EG11062
Arikan E., Kulkarni M.S., Thomas D.C., Sancar A. (1986) Sequences of the E. coli uvrB gene and protein. Nucleic Acids Res 14:2637-2650
uvrC
1 aa cleaved
EG11063
Tang M., Nazimiec M., Ye X., Iyer G.H., Eveleigh J., Zheng Y., Zhou W., Tang Y.Y. (2001) Two forms of UvrC protein with different double-stranded DNA binding affinities. J Biol Chem 276:3904-10
uvrD
0 aa cleaved
EG11064
Yamamoto Y., Ogawa T., Shinagawa H., Nakayama T., Matsuo H., Ogawa H. (1986) Determination of the initiation sites of transcription and translation of the uvrD gene of Escherichia coli. J Biochem (Tokyo) 99:1579-1590
uxaB
0 aa cleaved
EG11065
Blanco C., Mata-Gilsinger M. (1986) A DNA sequence containing the control sites for the uxaB gene of Escherichia coli. J Gen Microbiol 132:697-705
valS
0 aa cleaved
EG11067
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ves
0 aa cleaved
EG13994
Yamada M., Nagamitsu H., Izu H., Nakamura K., Talukder A.A. (2002) Characterization of the ves gene, which is expressed at a low temperature in Escherichia coli. J Mol Microbiol Biotechnol 4:163-9
vsr
1 aa cleaved
EG11068
Tsutakawa S.E., Muto T., Kawate T., Jingami H., Kunishima N., Ariyoshi M., Kohda D., Nakagawa M., Morikawa K. (1999) Crystallographic and functional studies of very short patch repair endonuclease. Mol Cell 3:621-628
wrbA
1 aa cleaved
EG11540
Yang W., Ni L., Somerville R.L. (1993) A stationary-phase protein of Escherichia coli that affects the mode of association between the trp repressor protein and operator-bearing DNA. Proc Natl Acad Sci U S A 90:5796-5800
xerC
0 aa cleaved
EG11069
Colloms S.D., Sykora P., Szatmari G., Sherratt D.J. (1990) Recombination at ColE1 cer requires the Escherichia coli xerC gene product, a member of the lambda integrase family of site-specific recombinases. J Bacteriol 172:6973-6980
xerD
0 aa cleaved
EG11071
Blakely G., May G., McCulloch R., Arciszewska L.K., Burke M., Lovett S.T., Sherratt D.J. (1993) Two related recombinases are required for site-specific recombination at dif and cer in E. coli K12. Cell 75:351-361
xseA
0 aa cleaved
EG11072
Chase J.W., Rabin B.A., Murphy J.B., Stone K.L., Williams K.R. (1986) Escherichia coli exonuclease VII. Cloning and sequencing of the gene encoding the large subunit (xseA). J Biol Chem 261:14929-14935
xseB
1 aa cleaved
EG11098
Diaz D.L., Williams K.R., Chase J.W., Unpublished in P22938
xylF
23 aa cleaved
EG20252
Sumiya M., Davis E.O., Packman L.C., McDonald T.P., Henderson P.J. (1995) Molecular genetics of a receptor protein for D-xylose, encoded by the gene xylF, in Escherichia coli. Receptors Channels 3:117-128
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yajQ
1 aa cleaved
EG13613
Saveanu C., Miron S., Borza T., Craescu C.T., Labesse G., Gagyi C., Popescu A., Schaeffer F., Namane A., Laurent-Winter C., Barzu O., Gilles A.M. (2002) Structural and nucleotide-binding properties of YajQ and YnaF, two Escherichia coli proteins of unknown function. Protein Sci 11:2551-60
ybcL
21 aa cleaved
EG13628
Serre L., Pereira de Jesus K., Zelwer C., Bureaud N., Schoentgen F., Benedetti H. (2001) Crystal structures of YBHB and YBCL from Escherichia coli, two bacterial homologues to a Raf kinase inhibitor protein. J Mol Biol 310:617-34
ybiS
24 aa cleaved
EG13324
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ycaC
0 aa cleaved
EG11241
Colovos C., Cascio D., Yeates T.O. (1998) The 1.8 A crystal structure of the ycaC gene product from Escherichia coli reveals an octameric hydrolase of unknown specificity. Structure 6:1329-37
yccJ
1 aa cleaved
EG12703
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yccU
0 aa cleaved
EG13723
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yceI
22 aa cleaved
EG11820
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ychF
1 aa cleaved
EG11404
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yciE
0 aa cleaved
EG11125
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
yciF
0 aa cleaved
EG11126
Yoshida T., Ueguchi C., Yamada H., Mizuno T. (1993) Function of the Escherichia coli nucleoid protein, H-NS: molecular analysis of a subset of proteins whose expression is enhanced in a hns deletion mutant. Mol Gen Genet 237:113-122
yciI
0 aa cleaved
EG11607
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yciN
0 aa cleaved
EG12868
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ydcG
22 aa cleaved
EG12859
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ydfG
0 aa cleaved
EG12345
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ydfZ
1 aa cleaved
EG13838
Lacourciere G.M., Levine R.L., Stadtman T.C. (2002) Direct detection of potential selenium delivery proteins by using an Escherichia coli strain unable to incorporate selenium from selenite into proteins. Proc Natl Acad Sci U S A 99:9150-3
yeaD
0 aa cleaved
EG12679
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yedX
23 aa cleaved
EG14046
Mitchell R., Rudd K.E., unpublished in P76341
yeeX
0 aa cleaved
EG13391
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yejK
1 aa cleaved
EG12048
Murphy L.D., Rosner J.L., Zimmerman S.B., Esposito D. (1999) Identification of two new proteins in spermidine nucleoids isolated from Escherichia coli. J Bacteriol 181:3842-3844
yfdX
21 aa cleaved
EG14146
Nishino K., Yamaguchi A. (2001) Overexpression of the response regulator evgA of the two-component signal transduction system modulates multidrug resistance conferred by multidrug resistance transporters. J Bacteriol 183:1455-8
yfiA
1 aa cleaved
EG11151
Pasquali C., Frutiger S., Wilkins M.R., Hughes G.J., Appel R.D., Bairoch A., Schaller D., Sanchez J.C., Hochstrasser D.F. (1996) Two-dimensional gel electrophoresis of Escherichia coli homogenates: the Escherichia coli SWISS-2DPAGE database. Electrophoresis 17:547-555
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Agafonov D.E., Kolb V.A., Nazimov I.V., Spirin A.S. (1999) A protein residing at the subunit interface of the bacterial ribosome. Proc Natl Acad Sci U S A 96:12345-12349
Maki Y., Yoshida H., Wada A. (2000) Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli. Genes Cells 5:965-74
yfiD
0 aa cleaved
EG11784
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Green J., Baldwin M.L. (1997) HlyX, the FNR homologue of Actinobacillus pleuropneumoniae, is a [4Fe-4S]-containing oxygen-responsive transcription regulator that anaerobically activates FNR-dependent class I promoters via an enhanced AR1 contact. Mol Microbiol 24:593-605
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
Blankenhorn D., Phillips J., Slonczewski J.L. (1999) Acid- and base-induced proteins during aerobic and anaerobic growth of Escherichia coli revealed by two-dimensional gel electrophoresis. J Bacteriol 181:2209-2216
ygaU
1 aa cleaved
EG12675
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ygfZ
1 aa cleaved
EG12685
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yggX
1 aa cleaved
EG12984
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ygiN
0 aa cleaved
EG12657
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ygiW
20 aa cleaved
EG13025
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yhbG
1 aa cleaved
EG11680
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yhbH
0 aa cleaved
EG11681
Maki Y., Yoshida H., Wada A. (2000) Two proteins, YfiA and YhbH, associated with resting ribosomes in stationary phase Escherichia coli. Genes Cells 5:965-74
yhbN
27 aa cleaved
EG12618
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yhcN
22 aa cleaved
EG12820
Hus N., Del Campo M., Mitchell, R., Rudd K.E., Unpublished
yhjJ
24 aa cleaved
EG12254
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yifE
1 aa cleaved
EG11450
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yihD
0 aa cleaved
EG11830
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yjbJ
0 aa cleaved
EG11928
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yjbR
0 aa cleaved
EG11936
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yjgF
1 aa cleaved
EG12524
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yjjK
1 aa cleaved
EG12343
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
ynfD
21 aa cleaved
EG13842
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
yodA
23 aa cleaved
EG14049
Ferianc P., Farewell A., Nystrom T. (1998) The cadmium-stress stimulon of Escherichia coli K-12. Microbiology 144:1045-1050
yphF
26 aa cleaved
EG13467
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
yqiC
0 aa cleaved
EG13031
Wasinger V.C., Humphery-Smith I. (1998) Small genes|gene-products in Escherichia coli K-12. FEMS Microbiol Lett 169:375-382
ytfQ
21 aa cleaved
EG12517
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
znuA
44 aa cleaved
EG12678
Link A.J., Robison K., Church G.M. (1997) Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12. Electrophoresis 18:1259-1313
Wilkins M.R., Gasteiger E., Tonella L., Ou K., Tyler M., Sanchez J.C., Gooley A.A., Walsh B.J., Bairoch A., Appel R.D., Williams K.L., Hochstrasser D.F. (1998) Protein identification with N and C-terminal sequence tags in proteome projects. J Mol Biol 278:599-608
Tonella L., Walsh B.J., Sanchez J.C., Ou K., Wilkins M.R., Tyler M., Frutiger S., Gooley A.A., Pescaru I., Appel R.D., Yan J.X., Bairoch A., Hoogland C., Morch F.S., Hughes G.J., Williams K.L., Hochstrasser D.F. (1998) '98 Escherichia coli SWISS-2DPAGE database update. Electrophoresis 19:1960-1971
zra
26 aa cleaved
EG11918
Noll M., Petrukhin K., Lutsenko S. (1998) Identification of a novel transcription regulator from Proteus mirabilis, PMTR, revealed a possible role of YJAI protein in balancing zinc in Escherichia coli. J Biol Chem 273:21393-21401
zur
0 aa cleaved
EG11929
Patzer S.I., Hantke K. (2000) The zinc-responsive regulator Zur and its control of the znu gene cluster encoding the ZnuABC zinc uptake system in Escherichia coli. J Biol Chem 275:24321-32
Many protein starts have not yet been verified. Link for more information about
Gene Quality
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